maintainer: Ionut Iosifescu Enescu

en: research-data-management jupyter-notebooks open-science open-source hpc reproducibility open-data

en: Open Science Support @ WSL (Poster)

en:
This poster was originally created for the swissuniversities Open Science Action Plan: Kick-Off Forum, and showed to the audience on 17.10.2019. It illustrates how the environmental data portal EnviDat provides the tools for fostering Open Science and Reproducibility of scientific research at WSL.

Supporting open science is a highly relevant user requirement for EnviDat and for implementing FAIR (Findability, Accessibility, Interoperability and Reusability) principles at dataset level.
EnviDat encourages WSL scientists to complement data publication with a complete description of research methods and the inclusion of the open source software, code or scripts used for processing the dataset or for obtaining the published results. By openly publishing open software (e.g. as Jupyter notebooks) alongside research data sets, researchers can contribute to mitigate reproducibility issues.

EnviDat also promotes and supports, where possible and practical, the publication of software as Jupyter notebooks. Jupyter notebooks provide a solution for improved documentation and interactive execution of open code in a wide range of programming languages (Python, R, Octave/Matlab, Java or Scala). These programming languages are widely used in environmental research at WSL and well supported by the Jupyter-compatible kernels. We have sucessfully interfaced EnviDat-hosted notebooks with the WSL High-Performance Computing (HPC) Linux Cluster through a JupyterHub/JuypterLab beta installation on the HPC cluster implemented in close collaboration with the WSL IT-Services.
For existing software that cannot be easily migrated to Jupyter Notebooks, the Open Science and Reproducibility is assisted by containerisation. We have proven that several Singularity containers can successfully run on WSL's HPC cluster.

Finally, the researchers can upload the data/results complemented by code (e.g. as Jupyter Notebooks, or Singularity containers) and any additional documentation in EnviDat. Consequently, they will receive a DOI for the entire dataset, which they can reference in their science paper in order to publish a more reproducible research.

_License_: This poster is released by WSL and the EnviDat team to the public domain under a Creative Commons 4.0 CC0 "No Rights Reserved" international license. You can reuse this poster in any way you want, for any purposes and without restrictions.

hpc

display_name: hpc

jupyter-notebooks

display_name: jupyter-notebooks

open-data

display_name: open-data

open-science

display_name: open-science

open-source

display_name: open-source

reproducibility

display_name: reproducibility

research-data-management

display_name: research-data-management

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Open Science Support at the Swiss Federal Research Institute WSL. The EnviDat Concept


en: soil-water-balance solar-radiation growing-degree-days temperature relative-humidity precipitation growing-season-length

state: active

type: dataset

en: CHELSA-BIOCLIM+ Technical Documentation

media_type: PDF

en: Technical documentation document including the variable names, units, scaling, offset, and background.

format: PDF

en: CHELSA-BIOCLIM+

media_type: geotiff

en: Global extented set of bioclimatic variables at different temporal (e.g. monthly, annual, long term normals) resolution in Geotiff format.

format: GeoTIFF

en: A multitude of physical and biological processes on which ecosystems and human societies depend are governed by climatic conditions. Understanding how these processes are altered by climate change is central to mitigation efforts. Based on mechanistically downscaled climate data, we developed a set of climate-related variables at yet unprecedented spatiotemporal detail as a basis for environmental and ecological analyses. We created gridded data for near-surface relative humidity (hurs), cloud area fraction (clt), near-surface wind speed (sfcWind), vapour pressure deficit (vpd), surface downwelling shortwave radiation (rsds), potential evapotranspiration (pet), climate moisture index (cmi), and site water balance (swb), at a monthly temporal and 30 arcsec spatial resolution globally starting 1980 until 2018. At the same spatial resolution, we further estimated climatological normals of frost change frequency (fcf), snow cover days (scd), potential net primary productivity (npp), growing degree days (gdd), and growing season characteristics for the periods 1981-2010, 2011-2040, 2041-2070, and 2071-2100, considering three shared socioeconomic pathways (SSP126, SSP370, SSP585) and five Earth system models. Time-series variables showed high accuracy when validated against observations from meteorological stations. Climatological normals were also highly correlated to observations although some variables showed notable biases, e.g., snow cover days (scd). Together, the data sets presented here allow improving our understanding of patterns and processes that are governed by climate, including the impact of recent and future climate changes on the world’s ecosystems and associated services to societies.

growing-degree-days

display_name: growing-degree-days

growing-season-length

display_name: growing-season-length

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

soil-water-balance

display_name: soil-water-balance

solar-radiation

display_name: solar-radiation

temperature

display_name: temperature

education

fr: Education, science

de: Bildung, Wissenschaft

en: Education and science

it: Formazione e scienza

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: CHELSA-BIOCLIM+ A novel set of global climate-related predictors at kilometre-resolution


automatic-detection-of-avalanches

maintainer: Matthias Heck

title_for_slug: automatic-detection-of-avalanches

en: avalanche-activity seismic snow monitoring hidden-markov-model

en: Results and Scripts

media_type: application/zip

en: This zip package contains the classification results, coherence results, reference data set, python scripts used for the classification and the start and end times for the pre-processed continuous seismic data. A further readme file is also include for more detailed information.

format: ZIP

mimetype: application/zip

en: This dataset contains the results obtained by an automatic classification using hidden Markov models of a continuous seismic dataset. To avoid long computational times, we reduced the seismic data using pre-processing step. The start and end times of the windows used for the classification are also included in this dataset. Furthermore, an avalanche reference data set is included and the python scripts used to perform the processing steps and the classification.

avalanche-activity

display_name: avalanche-activity

hidden-markov-model

display_name: hidden-markov-model

monitoring

display_name: monitoring

seismic

display_name: seismic

snow

display_name: snow

en: Automatic detection of avalanches


maintainer: EnviDat Support

en: decomposition soil-biodiversity yellowstone carrion wolf bacteria detritus carcass fungi biogeochemical-cycling

en:
Site	ID for different carcasses across the Yellowstone Landscape
Location	Sampling location, either under carcass or control plot
Species	Indicating whether carcass was from bison or elk
Gender	Gener of carcass; F = female, M = male, ? = unknown
Lat	Latitude
Long	Longitude
DSK	Days since kill; in days
Soil.N	Soil N concentration (%)
Soil.C	Soil C concentration (%)
Veg.C	Vegetation C concentration (%); dominant grasses sampled
Veg.N	Vegetation N concentration (%); dominant grasses sampled
Veg.CtoN	Vegetation C to N ratio; dominant grasses sampled
Soil.resp	Soil respiration (g m-2 h-1)
soil.temp	Soil temperature (°C)
Soil.moist	Soil moisture (volumentric; %)
CRR	Cotton rotting rate
bacteria.richness	Bacteria richness
bacteria.diversity	Bacteria diverstiy
fungi.richness	Fungi richness
fungi.diversity	Fungi diversity
bacteria.abundance	Bacteria abundance
fungi.abundance	Fungi abundance

format: XLS

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch, A.C., Frossard, A., Schütz, M., Frey, B., Morris, A.W., Bump, J.K. (accepted) Effects of elk and bison carcasses on soil microbial communities and ecosystem functions in Yellowstone, USA. (accepted). Functional Ecology
doi: ...

Methods
Study area and study sites
This study was conducted in YNP’s Northern Range (NR), located in north-western Wyoming and south-western Montana, USA (~44.9163° N, 110.4169° W). The NR expands over ~1000 km2 and features long cold winters and short dry summers. Grasslands and shrublands dominate the NR that is the home of large migratory herds of bison (winter counts 2017: ~3919 individuals; Geremia, Wallen, & White, 2017) and elk (~5349 individuals) as well as their main predators, approximately five packs of wolves with a total of 33 individuals (Smith et al., 2017). As part of a long-term research program within YNP, wolf predation has been studied since their reintroduction in 1995.
For our study, we received ground-truthed coordinates of bison and elk carcasses from winter 2016/17 (November 2016 through April 2017) from the YNP Wolf Project. Between June 20 and July 1, 2017, we visited 24 carcasses in total. At five sites, we could not sample as the carcasses were no longer found. In total we located remains (hairmats, rumen content, bones, teeth) of 19 adult male and female carcasses (7 bison, 12 elk; Supplementary Table 1). Live body weights of adult bison and elk are approximately 730 kg (male bison), 450 kg (female bison), 330 kg (male elk), and 235 kg (female elk, Meagher, 1973; Quimby & Johnson, 1951).
The kills and subsequent consumption happened between 34 and 173 days prior to our sampling (hereafter “days since kill”, DSK), for which we accounted in our statistics. Note that wolves and other scavengers consumed the soft tissue of the carcasses quickly, hence, there is close to no soft tissue left for decomposition as compared to an intact body left on the soil surface. The 19 carcass sites covered the extent of YNP’s NR, with both bison and elk carcasses showing similar distributions; elevation ranged from 1703 to 2884 m a.s.l. (Supplementary Fig 1 & Supplementary Table 1). The carcasses were all located in grassland or sage-brush shrubland, with or without sparsely scattered trees, and both bison and elk carcasses showed the same distribution of DSK. At each study site, we selected a reference plot (hereafter “control”) that was of comparable size, slope aspect and vegetation to the carcass location (hereafter “carcass”). The control was at least 10 m away (Danell, Berteaux, & Brathen, 2002; Melis et al., 2007) from the carcass itself to ensure the absence of potential direct and indirect carcass effects (paired design; (Bump, Webster, et al., 2009; Bump, Peterson, et al., 2009).

Ecosystem functions and soil properties
We randomly collected 50 g of mineral soil from three locations on both control and carcass plots to a depth of 5 cm with sterile techniques and gently mixed the material to obtain a composite sample. Half the soil sample was immediately bagged in plastic bags (whirl packs), stored in a cooler with ice packs (~5 ºC), sieved (2-mm) and frozen within 4-6 hours of collection to assess soil microbial communities. For this purpose, we extracted total genomic DNA from 0.5 g soil using the PowerSoil DNA Isolation Kit (Qiagen, Hilden, Germany). DNA concentrations were measured using PicoGreen (Molecular Probes, Eugene, OR, USA). PCR amplifications of partial bacterial small-subunit ribosomal RNA genes (region V3–V4 of 16S rRNA) and fungal ribosomal internal transcribed spacers (region ITS2) were performed as described previously (Frey et al., 2016). Each sample consisting of 40 ng DNA was amplified in triplicate and pooled before purification with Agencourt AMPure XP beads (Beckman Colter, Berea, CA, USA) and quantified with the Qubit 2.0 fluorometric system (Life Technologies, Paisley, UK). Amplicons were sent to the Genome Quebec Innovation Center (Montreal, Canada) for barcoding using the Fluidigm Access Array technology and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, CA, USA).
Quality control of bacterial and fungal reads was performed using a customized pipeline (Supplementary Table 2; Frey et al., 2016). Paired-ends reads were matched with USEARCH (Edgar & Flyvbjerg, 2015), substitution errors were corrected using Bayeshammer (Nikolenko, Korobeynikov, & Alekseyev, 2013) and PCR primers were trimmed (allowing for 1 mismatch, read length >300 bp for 16S and >200 bp for ITS primers) using Cutadapt (M. Martin, 2011). Sequences were dereplicated and singleton reads removed prior to clustering into operational taxonomic units (OTUs) at 97% identity using USEARCH (Edgar, 2013). The remaining centroid sequences were tested for the presence of ribosomal signatures using Metaxa2 (Bengtsson-Palme et al., 2015) or ITSx (Bengtsson-Palme et al., 2013). Taxonomic assignments of the OTUs were obtained using Bayesian classifier (Wang, Garrity, Tiedje, & Cole, 2007) with a minimum bootstrap support of 60% implemented in mothur (Schloss et al., 2009) by querying the bacterial and fungal reads against the SILVA Release 128 (Quast et al., 2013) and UNITE 8.0 (Abarenkov et al., 2010) reference databases for 16S and ITS OTUs, respectively.
Abundances of the bacterial 16S rRNA gene and fungal ITS amplicon were determined by quantitative real-time PCR (qPCR) on an ABI7500 Fast Real-Time PCR system (Applied Biosystems, Foster City, CA, USA) as described previously (Frossard et al., 2018). The same primers (without barcodes) and cycling conditions as for the sequencing approach were used for the 16S and ITS qPCR. Three standard curves per target region were obtained using tenfold serial dilutions of plasmids generated from cloned targets (Frey, Niklaus, Kremer, Lüscher, & Zimmermann, 2011). Data were converted to represent mean copy number of targets per gram of soil (dry weight).
The other half of the soil sample was bagged in paper, dried to constant weight at 60°C, passed through a 2 mm sieve and analyzed for total C and N concentration with a CE Instruments NC 2100 soil analyzer (CE Elantech Inc., Lakewood NJ, USA). We also collected 20 mature and undamaged leaves of the dominant grass species growing on control and carcass sites, but taxa were not recorded. The plant material was dried at 60°C, finely ground till homogenized and also analyzed to obtain total C and N concentrations. Soil temperature (10 cm depth) was measured with a waterproof digital thermometer (Barnstead International, Dubuque IA, USA) at three locations each at the control and carcass site. Soil moisture (0 – 10 cm depth) was measured with time domain reflectometry (Field-Scout TDR-100; Spectrum Technologies, Plainfield IL, USA) at five randomly chosen points on control and carcass sites. We measured soil respiration at five randomly chosen points at both control and carcass sites with a PP-Systems SRC-1 soil respiration chamber (closed circuit) attached to a PP-Systems EGM-4 infrared gas analyzer (PP-Systems, Amesbury, MA, USA). For each measurement the soil chamber (15 cm high; 10 cm diameter) was tightly placed on the soil surface, after clipping plants to avoid measuring plant respiration or photosynthesis. Measurements were conducted over 120 s.
In addition, we assessed the decomposition rates of standardized OM using the cotton strip assay (Latter & Howson, 1977; Latter & Walton, 1988). Cotton cloth tensile strength loss (CTSL) is a measure of decomposition, and an index to express the combined effect of soil microclimatic, physical, chemical and biological properties on decomposition while accounting for OM quality (Latter & Walton, 1988; Risch, Jurgensen, & Frank, 2007; Withington & Sanford Jr., 2007). We placed five 20 cm wide x 13 cm long sheets of 100% unbleached cotton cloth (American Type SM 1/18’’, Warp: 34/1, Weft: 20/1, Weave plain, 29.5 picks/cm warp, 22 picks/cm weft, 237 g/m2; Daniel Jenny & Co., Switzerland;) at each carcass and control site vertically into the soil by making slits with a flat spade to a depth of 12 cm. We inserted each cloth with the spade, and then pushed the slit closed to assure tight contact with the soil. The cloths were retrieved after 18 to 27 days. After retrieval, the cloths were air-dried, remaining soil gently removed by hand, and 1.5 cm wide strips were cut at the 3.5-5.0 cm (top) and the 9-10.5 cm (bottom) soil depth. The strips were equilibrated at 50 % relative humidity and 20°C for 48 hours (climate chamber) prior to strength testing (Scanpro Awetron TH-1 tensile strength tester; AB Lorentzen and Wettre, Kista, Sweden). Cotton rotting rate (CRR) = (CTScontrol - CTSfinal/CTSfinal)1/3 * (365/t), where CTScontrol is the cotton tensile strength of a control cloth and CTSfinal the cotton tensile strength of the incubated sample, t is the incubation period in days. Control cloths were inserted into the ground and immediately retrieved to account for tensile strength loss associated with cloth insertion. We averaged the CRR of top and bottom strips for further analyses as no difference was found between the two. All sampling and cloth insertion took place between June 20 and July 1, 2017, cloths were retrieved between July 17 and 20, 2017. Soil respiration, average CRR, vegetation N concentration and vegetation C:N ratio are defined as ecosystem functions, soil C and N concentration, soil temperature and moisture as soil abiotic properties, and bacterial and fungal richness (number of taxa), diversity (Shannon) and abundance as soil biotic properties.

Statistical analyses
Univariate analyses for ecosystem functions, soil biotic and abiotic properties
We tested whether individual ecosystem functions, soil biotic and abiotic properties differed between carcass and control (“Location”), bison and elk (“Species”) and days since kill (“DSK”). For this purpose, we used linear mixed effect models (LMM, “nlme” package v 3.1 – 131.1 in R v 3.4.4; Pinheiro, Bates, DebRoy, & Sarkar, 2018; R Core Team, 2019) with Location, Species, Location x Species and DSK as fixed effects. Site was included as random effect to account for the paired design. We developed a separate model for all dependent variables. All but bacterial richness, fungal richness, fungal diversity and vegetation N concentration were natural-log transformed to meet model assumptions. For each LMM, we calculated contrasts to assess the specific comparisons we were interested in with the “lsmeans” package v 2.27-62 (Lenth & Love, 2018): 1) carcass vs control, 2) carcass bison vs control bison, and 3) carcass elk vs control elk. We also tested whether we had differences between bison and elk carcasses or the sites where bison and elk were killed and included contrasts 4) carcass bison vs carcass elk and 5) control bison vs control elk.
We calculated the log response ratio (LRR = ln[carcass/control]) to obtain carcass effects for all variables for both species separately. LRR < 0 indicates higher value at control compared to carcass, LRR > 0 indicates higher values at carcass compared control. We used LRRs for visualization and to assess spatial patterns in carcass effects across YNP. For this purpose we calculated the Moran’s I statistic for each ecosystem function, soil biotic and abiotic property based on a latitude-longitude matrix with the “moran.test” function in the “spdep” package version 1.1-3 (Bivand et al., 2019).
Multivariate analyses
Rare OTUs, defined as OTUs with a low abundance of reads, were retained in multivariate methods because they only marginally influence these analyses (Gobet, Quince, & Ramette, 2010). Bray–Curtis dissimilarity matrices were generated based on square-root-transformed matrices. We used Principal Coordinate Analyses (PCoA) to assess how soil bacterial and fungal communities differed between control and carcass of bison and elk (“vegan” package v 2.5-4, Oksanen et al., 2019). We then extracted PCoA axes scores 1 and 2 and used LMM (“nlme” package) with Location, Species, Location x Species and DSK as fixed effects. Site was, again, included as random effect. We again calculated the contrasts as described above using the “lsmeans” package. We also assessed how ecosystem functions, and soil abiotic and biotic properties were related to the soil bacteria and fungi community structure associated with bison and elk control and carcasses using the “envfit” function in the “vegan” package (Oksanen et al., 2019).
Indicator species analyses were performed using the multipatt function implemented in the “indicspecies” package version 1.7.6 with 100000 permutations (De Caceres & Jansen, 2016). This step allowed to identify OTUs that led to changes in multivariate patterns between control and carcass of both bison and elk separately (De Cáceres, Legendre, & Moretti, 2010). The multipatt function uses a point biserial correlation coefficient statistical test. Indicator OTUs were defined as bacterial and fungal OTUs with more than 50 sequences, i.e., removing rare taxa and taxa with low abundances containing little indicator information (Rime et al., 2015) and that were significantly correlated with Location (p < 0.05, correlation coefficient > 0.3). A heatmap of these OTUs were generated with the vegan and ggplot2 packages. The indicator analyses were performed in R version 3.3.3 (R Core Team, 2017).

References
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Bengtsson-Palme, J., Hartmann, M., Eriksson, K. M., Pal, C., Thorell, K., Larsson, D. G. J., & Nilsson, R. H. (2015). metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data. Molecular Ecology Resources, 15(6), 1403–1414. doi:10.1111/1755-0998.12399
Bengtsson-Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., … Nilsson, R. H. (2013). Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in Ecology and Evolution, 4(10), 914–919. doi:10.1111/2041-210X.12073
Bivand, R., Altman, M., Anselin, L., Assuncao, R., Berke, O., Blanchet, G., … Yu, D. (2019). spdep: Spatial dependence, weighthing schemes, statistics. R package version 1.1-3.
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Bump, J. K., Webster, C. R., Vucetich, J. A., Peterson, R. O., Shields, J. M., & Powers, M. D. (2009). Ungulate carcasses perforate ecological filters and create biogeochemical hotspots in forest herbaceous layers allowing trees a competitive advantage. Ecosystems, 12(6), 996–1007. doi:10.1007/s10021-009-9274-0
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Rime, T., Hartmann, M., Brunner, I., Widmer, F., Zeyer, J., & Frey, B. (2015). Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield. Molecular Ecology, 24(5), 1091–1108. doi:10.1111/mec.13051
Risch, A. C., Jurgensen, M. F., & Frank, D. A. (2007). Effects of grazing and soil micro-climate on decomposition rates in a spatio-temporally heterogeneous grassland. Plant and Soil, 298(1–2), 191–201. doi:10.1007/s11104-007-9354-x
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., … Weber, C. F. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology, 75(23), 7537–7541. doi:10.1128/AEM.01541-09
Smith, D., Stahler, D., Cassidy, K., Stahler, E., Metz, M., Cassidy, B., … Cato, E. (2018). Yellowstone National Park wolf project annual report 2017. Yellowstone National Park, Mammoth, WY, USA: National Park Service, Yellowstone Center of Resources.
Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73(16), 5261–5267. doi:10.1128/AEM.00062-07
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Please cite this paper together with the citation for the datafile.

bacteria

display_name: bacteria

biogeochemical-cycling

display_name: biogeochemical-cycling

carcass

display_name: carcass

carrion

display_name: carrion

decomposition

display_name: decomposition

detritus

display_name: detritus

fungi

display_name: fungi

soil-biodiversity

display_name: soil-biodiversity

wolf

display_name: wolf

yellowstone

display_name: yellowstone

en: Elk and bison carcasses in Yellowstone, USA


maintainer: Matthias Haeni

en: temperature par climate-change swiss-forest-lab relative-humidity meteo long-term wind-speed precipitation meteorology

en: Site photo of the forest station (ISB)

media_type: image/jpeg

en: Site photo of the forest station from below (viewing upwards the slope).

format: SERVICE

mimetype: image/jpeg

en: Data plot of the forest station (ISB)

media_type: application/pdf

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

mimetype: application/pdf

en: Site photo of the field station (ISF)

en: Site photo of the field station from the side.

en: Site aerial photo (Isone)

en: Site aerial photo from both Isone stations. Source: Google. 2016. Site aerial photo from both Isone stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Field station data (ISF)

media_type: text/csv

en: Data file.

format: CSV

mimetype: text/csv

en: Forest station data (ISB)

en: Data plot of the field station (ISF)

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Isone in Switzerland where one station is located within a natural broad-leaved forest stand (ISB) with European beech (_Fagus sylvatica_; 70-100 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, ISF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Isone is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

wind-speed

display_name: wind-speed

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Isone, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


en: digital-elevation-model swiss-geodata digital-planning cable-yarding qgis-plugin open-source seilaplan wms-data geoinformation-system

en: View video on youtube!

en: WMS-Layer als Hintergrundkarten laden

en:
In order to digitally plan a cable line using the QGIS plugin ‘Seilaplan’, maps with various background information are helpful. In this tutorial we show you how to obtain maps that are helpful for cable line planning, for example a national map of Switzerland at different scales, the NFI vegetation height model or the NFI forest mix rate. For this we explain what WMS datasets are and how to integrate them into QGIS. No download of large data is needed for this, only a good internet connection. Please note that the tutorial language is German!

Link for the integration of WMS data: https://wms.geo.admin.ch/

Link to the description on the Swisstopo website:
https://www.geo.admin.ch/en/geo-services/geo-services/portrayal-services-web-mapping/web-map-services-wms.html

Link to the Seilaplan website: https://seilaplan.wsl.ch

**************************

Für die Verwendung des QGIS Plugins Seilaplan zur digitalen Seillinienplanung sind verschiedene Hintergrundkarten hilfreich. In diesem Tutorialvideo zeigen wir, was WMS Daten sind und wie man diese in QGIS einbinden kann. Dafür müssen die Daten nicht heruntergeladen werden. Es braucht lediglich eine gute Internetverbindung. Für die Seillinienplanung hilfreiche Karten sind bspw. die Landeskarte der Schweiz in verschiedenen Massstäben, das Vegetationshöhenmodell LFI oder der Waldmischungsgrad LFI.

Link zur Einbindung der WMS Daten: https://wms.geo.admin.ch/

Link zur Beschreibung auf der Swisstopo Webseite: https://www.geo.admin.ch/de/geo-dienstleistungen/geodienste/darstellungsdienste-webmapping-webgis-anwendungen/web-map-services-wms.html

Link zur Seilaplan-Website: https://seilaplan.wsl.ch

cable-yarding

display_name: cable-yarding

digital-elevation-model

display_name: digital-elevation-model

digital-planning

display_name: digital-planning

geoinformation-system

display_name: geoinformation-system

open-source

display_name: open-source

qgis-plugin

display_name: qgis-plugin

seilaplan

display_name: seilaplan

swiss-geodata

display_name: swiss-geodata

wms-data

display_name: wms-data

education

en: Education and science

en: EnviDat: the Environmental Data Portal

en: Seilaplan Tutorial: Load WMS layers as background maps


en: preferential-deposition lidar alpine3d lee-side-flow-field tls

en: Dataset

media_type: ZIP

en:
The data presented here corresponds to the publication "A Close-Ridge Small-Scale Atmospheric Flow Field and its Influence on Snow Accumulation" (Gerber et al., 2017), which investigates an eddy-like structure in the vicinity of the Sattelhorn in the Dischma valley (Davos Switzerland) and its influence on snow accumulation. The dataset contains:

* Alpine3D: Alpine3D snow depth grids (25 m resolution) for two simulations with and without snow redistribution.
* ARPS: 10 ARPS simulations (25 m horizontal resolution) with different model setups (wind direction, wind speed, stability).
* LiDAR: Processed LiDAR PPI (D2_PPI_1h) and RHI (D2_cross_1h) across the valley with a hourly resolution for the period 27 October 2015 01:00 - 29 October 2015c 21:00 (spatial resolution: 25 m).
* meteostations-dischma: Meteorological station data of two meteorological stations in the Dischma valley with 10 minute resolution for the period 28 October 2015 - 30 October 2015.
* TLS: Snow depth change data (m) between 28 October 2015 and 30 October 2015 based on terrestrial laser scans.

For more details about the simulation and observation data, see Gerber et al., 2017.

Publication: Gerber et al., 2017: A Close-Ridge Small-Scale Atmospheric Flow Field and its Influence on Snow Accumulation, submitted to JGR - Atmospheres.

lee-side-flow-field

display_name: lee-side-flow-field

lidar

display_name: lidar

preferential-deposition

display_name: preferential-deposition

tls

display_name: tls

en: DISCHMEX - Observations and simulations of the close-ridge small-scale atmospheric flow field and snow accumulation at Sattelhorn, Dischma valley, Davos, Switzerland.


en: switzerland land-use-change modeling landscape-services land-use statistical-model urbanization

en: Scripts for Assessing potential landscape service trade-offs driven by urbanization in Switzerland

en:
Scripts ordered by their main purpose within sequential folders in this ReadMe marked with

Within the folders the capital letters refer to the parallel or sequential use of the scripts; scripts here in ReadMe are marked with

 00_Function Scripts
 Functions.r
Script containing several functions for analyzing statistical models: cohen.kappa, meva.table, D2, max-Tss, plot-TSS

 Service_functions.R
Script containing functions for calculating all services and returning sums (and median for bd and rec) as well as rasters

 01_Data Preparation
 A_AS_raster_preparation.R
Preparation of the land use rasters for the years 1985, 1997, and 2009 based on the original Arealstatistik (AS/ASCH); Assigning our categories and assining new values to all "construction sites" for calibrating the models
For model projection starting point (2009) and for service calculations (all ASCH years) the "other" categories were assigned to the land use categories based on dominant neighbor, so that there were no empty cells
Creation of water & mountainous area raster that stayed stable throughout the projections
Creation of MFH raster (2009), to have as base for all new projection years, as this category never becames any other

 B_Factors_preparation.R
Preparation of the factor rasters that were used to calculate service values per cell (see Table 2): LWfactor, Transportation, Vol, Rivers, Lakes, slope, TWW, Hazard_risk

 B_Predictors_preparation.R
Preparation of the raster of the predictors used for calibrating (ASCH years) and projecting (stable) the transition models that do not depend on the land use categories: Temperature (ASCH years), solar radiation (stable), Public transportation access (stable), Elevation (stable), Workers density (ASCH years), Population change (ASCH transitions)

 B_Regions_preparation.R
Preparation of bioregions as raster to be used to mask asxxxx later to calculated services and land use area just for one region

 C_Pred_proj.R
Projecting the dynamic predictors into the future for projecting the land use transitions with the model: Linear extrapolations for workers densities and population; more detailed extrapolation of temperature (based on data for all stations that matched between the temp table we used for the calibration period and the projections from CS2M, and then making a spatial interpolation for all years based on the interpolation of temperature for all years per station)

 02_Model calibration
 A_Bioreg_pred_corr.R
Calculating correlation between the predictors for each bioregion and land use category, Output are those with too high correlation so that one predictor can be removed from transitions were both predictors occur

 A_trans_numbers_bioreg.R
Calculate transition numbers for each bioregion to decide which transitions to primarily consider

 B_Bioreg_ext_eval.R
Calculating TSS based on the external evaluation for the bioregion transitions that happened often enough to try to model them (calibration data: 85-97, evaluation data: 97-09)

 B_Bioreg_int_eval.R
Calculating TSS based on the internal evaluation for the bioregion transitions that happened often enough to try to model them (calibration data: 70%, evaluation data: 30%)

 C_Bioreg_TSS_analysis.R
Extracting TSS numbers from internal and external evaluation, calculating mean and median for each transition for each region for each evaluation method and saving as csv per region to be able to select only the transitions with high enough model performance

 D_Bioreg_Models_for_prediction.R
Calibration of the models that were then used to project land use transitions into the future; calibrated separately for each bioregion

 E_Residuals_trans_models.R
Calculation of Moran's I statistics to analyze the residuals of the land use transition models

 03_Projections
 A_Bioreg_Projections_run.R
Master script for: Extrapolaitng into the future with the regional models and then assembling for each time step to calculate new AS predictors; Several Outputs: txt file to test for NAs in Predictors, txt file with random seed number for sampling, txt file with times for calculation steps (check progress of script while running), csv sheet with projected transition frequencies, tif-rasters for every region and time step, pdf with raster plot for every region and time step

 04_Service calculation
 A_Bioreg_as_services.R
Calculate services per bioregion for years 1985, 1997, 2009

 A_Service_calculation_bioregions.R
Extracting service numbers(sums) per bioregions for all projection runs and storing them in a list of matrixes to be available for further plotting; can be run for swiss wide projections or regional ones

 05_Analysis
 A_Bioreg_ASCH_development.R
Extracting the occurrence of each category per region for all runs (first part), then for ASCH years, and then plotting them nicely; only works for regional projections

 A_Bioreg_Predictors_importanceD2.R
Calculating D2 for each transition and each considered predictor from bivariate models to get value of importance

 B_Bioreg_Pred_imp_analysis.R
Using calculated D2 to sort Predictors according to their importance for each transition

 A_Bioreg_Spatial_results_analysis.R
Plotting randomly sampled runs for ASCH and services to analyses their spatial development

 A_Bioreg_Transition_numbers_check_v1.R
Analyzing the frequency for all transitions for all regions and producing the point plots for each transition separately

 A_Bioreg_Transition_numbers_check_v2.R
Analyzing percentage and numbers of all transitions but plotting them per region and originating ASCH category

 B_Transition_Analysis.R
Further Analysis of transition numbers

 A_Service_analysis.R
Plotting of the service development for bioregions in several ways for analyzing

en: Data for Assessing potential landscape service trade-offs driven by urbanization in Switzerland

en:
The provided folder structure follows the set up of the scripts.
Data is only provided when it has been fully produced by us, otherwise dummies are given.
For data that will be produced by one of the scripts, no dummies are given.
The folders may contain sub-folders, which would be filled if the scripts were all run

 00_Analysis_Data
Data produced throughout the process of the calibration and projection that is later needed for analysis

 01_Raw_Data
Primary data from external sources that were used to compile the rasters and numbers used during the calibration and projection of landscape transitions as well as service calculation

 02_Prepared_Data
Data that will be prepared for further use by scripts are put in here
Additionally it contains the parameter sheets for the transition predictors that we compiled

 03_Model_Data
 Model outputs
Folder were the projection models statistics will be saved
 Models
Folder into which the actual transition models will be saved
 Residuals
Folder into which data on models residuals will be saved for future use

 04_Projected_Data
The output of the projections will be saved into this folder

 05_Service_Data
Any service calculations will be saved in here

 06_Results_Analysis
Any Analysis plots and tables as well as intermediate data will be saved here in the respective sub-folder

en:
Data and scripts of publication:

Madleina Gerecke, Oskar Hagen, Janine Bolliger, Anna M. Hersperger, Felix Kienast, Bronwyn Price, Loïc Pellissier (2019) Assessing potential landscape service trade-offs driven by urbanization in Switzerland. Palgrave communications.

Contains land use projections for Switzerland and scripts and data for these projections as well as the calculation of landscape services.

Data Folder:
Contains sub-folder with the data necessary for this study (provided were no copyright issues, otherwise placeholders with descriptions), and folders where produced data may be stored

Scripts Folder:
Contains scripts organized into subfolders depending on their purpose

Note: Some abbreviations within the scripts and data are derived from German words and not English.

land-use

display_name: land-use

land-use-change

display_name: land-use-change

landscape-services

display_name: landscape-services

modeling

display_name: modeling

statistical-model

display_name: statistical-model

switzerland

display_name: switzerland

urbanization

display_name: urbanization

en: Land use projections and services for Switzerland


en: sea-salt-aerosol ice antarctica arctic snow

en: Fig 1B_1

media_type: text/plain

en: Individual data to mean shown in Figure 1B

format: TXT

mimetype: text/plain

en: Fig 1E

en: Data to Figure 1E

en: Fig 1B_2

en: Fib 1B_3

en: Fig 1B

en: Data in Figure 1B

en: Read Me

en: Description of the data tables

en: Fig 1A

en: Data Figure 1A

en: Fig 1D

en: Data to Figure 1D

en: Code

media_type: m

en: Matlab code to read and plot the data

en: This table lists all data files in chronological order. "SampleTemp" refers to the reading of the PT-1000 at the side of the sample holder. "cellPressure" is the water vapour pressure during the measurements. From this, in presence of ice, the temperature of the ice sample can be calculated which is given in the column "iceTemp". "dT" is the difference, or temperature offset, between sensor's reading and the ice samples temperature. The offset is due to the sensor being mounted away from the cooled spot of the sample were it experiences heating from warmer parts of the sample holder. The off-set is used to calibrate the temperature sensor and the resulting temperature during the experiments is given in the column "temperature". "relHum" is the relative humidity above (supercooled) liquid and "concBrine" is the concentration of a NaCl solution in mol/l in equilibrium with ice at the experimental temperature. "Area" is the integrated PE signal.

en: Fig 1F_2

en: Individual data to mean shown in Figure 1F

en: Table 2

en: This table lists all NEXAFS data files in chronological order with PE carbon to oxygen signal intensity ratios -from which the atomic ratio were calculated in the paper - before ("preCtoO") and after ("postCtoO") each NEXAFS measurement. Also listed is the change in Na ("lossSodi"), O ("lossOxy"), Cl ("lossChlor"), and C ("lossCarb") signal intensity after the NEXAFS measurement compared to prior to the NEXAFS measurement.

en: Fig 1F

en: Data to Figure 1F

en: Fig 1F_1

en: Laboratory experiments are presented on the phase change at the surface of sodium chloride – water mixtures at temperatures between 259 K and 240 K. High selectivity to the upper few nanometres of the frozen solution – air interface is achieved by using electron yield near-edge X-ray absorption fine structure (NEXAFS) spectroscopy. We present the NEXAFS spectrum of the hydrohalite.

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data set on interfacial supercooling and the precipitation of hydrohalite in frozen NaCl solutions by X-ray absorption spectroscopy


en: europe development-priorities urban-region spatial-information strategic-plans

en: Planning intentios

en:
The present dataset is part of the report titled Gradinaru S.R., Hersperger A.M., Schmid F. (2021). Deriving Planning Intentions from written planning documents. Report on CONCUR Project- From plans to land change: how strategic spatial planning contributes to the development of urban regions.
The data corresponds to the data collected as part of the DPI Method for deriving all PIs contained in a plan (open coding) as detailed in section 4 of the report. The method involved reading the plans to break down of information in meaningful discrete “incidents” or planning intentions. To identify the planning intentions, the starting points were represented by a) the structuring of the plans in chapters and sub chapters and b) the themes that the plans addressed. Thus, the collected information was not grouped according to pre-defined categories of planning intentions, but rather put together as a list of intentions as revealed by each plan. As a result, we provide, for each case study, a document (named [Urban region name] PI as defined in the plan) which contains:
	Date when the information was filled in.
	Name of the urban region and analysed strategic spatial plan .
	A list of all planning intentions contained in a plan, with each PI being addresses as follows:
	Name of PI as it appears in the plan
	Translated name of the PI (i.e. short name for easy understanding of the meaning)
	Explanation regarding the meaning of the PI
	Why the PI is considered a priority for the urban region
	Spatial information on the PI (text and cartographic representations).
In total, 14 documents are available, one for each case study. Documents contain up to 20 pages of information extracted from the plans together with explanations and notes taken during plan reading.

development-priorities

display_name: development-priorities

europe

display_name: europe

spatial-information

display_name: spatial-information

strategic-plans

display_name: strategic-plans

urban-region

display_name: urban-region

education

en: Education and science

en: EnviDat: the Environmental Data Portal

en: Planning intentions in strategic plans of European urban regions


maintainer: Ionuț Iosifescu Enescu

en: map 1GB

media_type: image/tiff

format: TIFF

mimetype: image/tiff

en: large map 10GB

en: map 2GB

en: huge map 100GB

en: map preview 0.5MB

en: Bulk Data Access

en: Link to the S3 bucket where all the data resources can be downloaded in bulk

en: map 0.5GB

en: map 0.2GB

en:
The attached data are some large GIS raster files (GeoTIFFs) made with Natural Earth data. Natural Earth is a free vector and raster map data @ naturalearthdata.com. The data used for creating these large files was the "Cross Blended Hypso with Shaded Relief and Water". Data was concatenated to achieve larger and larger files. Internal pyramids were created, in order that the files can be opened easily in a GIS software such as QGIS or by a (future) GIS data visualisation module integrated in EnviDat.

Made with Natural Earth. Free vector and raster map data @ naturalearthdata.com

gis

display_name: gis

large-files

display_name: large-files

natural-earth

display_name: natural-earth

qgis

display_name: qgis

en: Large GIS raster data derived from Natural Earth Data (Cross Blended Hypso with Shaded Relief and Water)


en: temperature meteo swiss-forest-lab wind-speed precipitation long-term climate-change meteorology relative-humidity par

en: Site photo of the forest station (BAB)

en: Site photo of the forest station from below (viewing upwards the slope).

en: Forest station data (BAB)

en: Data file.

en: Data plot of the field station (BAF)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Site photo of the field station (BAF)

en: Site photo of the field station from below (viewing upwards the slope).

en: Data plot of the forest station (BAB)

en: Site aerial photo (Beatenberg)

en: Site aerial photo from both Beatenberg stations. Source: Google. 2016. Site aerial photo from both Beatenberg stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Field station data (BAF)

en:
High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Beatenberg in Switzerland where one station is located within a natural coniferous forest (BAB) with Norway spruce (_Picea abies_; 190-210 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, BAF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Beatenberg is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the
Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Beatenberg, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


maintainer: Axel Volkwein

en: rockfall-experiments experiments rockfall field-tests impact-testing field-test natural-hazard experiment field-data mass-movements

en: Raw data (high speed videos, acceleration measurements, laboratory tests)

en:
This file contains

* the high speed videos showing the concrete blocks impacting the gallery roof.
* the raw data of the acceleration measurements
* the data of Tiefbauamt Graubünden containg the tension tests of gallery reinforcment, ME-testing the cushion layer and the tests on concrete samples.

en: Acceleration measurements

en: The zip file contains five excel files, one for each test conducted. The first sheet contains the raw data and a data set that went through a low-pass filter. The sheet "Allgemein" contains calibration factors for the sensors and time details of a test. The sheets "DiaDaten" and "DiaDatenGefiltert" show the measurements over time. The block and slab kinetics are determined in the sheets "ZeitintegrationBlock" and "ZeitintegrationPlatte". The sheet "VergleichBeschleunigungen" shows the influence of the low-pass-filter and a running average filter on the block accelerations.

en: Video analysis

en: The zip contains five Excel-files that in turn contain the results of the performed video analyses. The sheet "Daten" contains the pixels of different positions on the blocks that were tracked by the software "Kinovea". The sheet "Auswertung" determines the block kinetics based on the pixel data over time.

en: Five full-scale field tests were conducted with concrete blocks weighting between 800 and 3200 kg being dropped onto the roof of a gallery structure made from reinforced concrete. The impacts were recorded using high-speed video and acceleration measurements at the falling blocks. The dataset contains the raw data as well as the analyses of the block trajectories, i.e. kinetics and dynamics. Setup of the measurements and the analyses conducted are published in Volkwein, A. "Durchführung und Auswertung von Steinschlagversuchen auf eine Stahlbetongalerie", WSL-Berichte, Heft 68, 2018.

experiment

display_name: experiment

experiments

display_name: experiments

field-data

display_name: field-data

field-test

display_name: field-test

field-tests

display_name: field-tests

impact-testing

display_name: impact-testing

mass-movements

display_name: mass-movements

natural-hazard

display_name: natural-hazard

rockfall

display_name: rockfall

rockfall-experiments

display_name: rockfall-experiments

education

en: Education and science

en: EnviDat: the Environmental Data Portal

en: Rockfall gallery testing Parde 2016


backward-trajectories

maintainer: Michael Sprenger

title_for_slug: backward-trajectories

en: raclets complex-topopgraphy lagrangian-analysis cosmo alps backward-trajectories atmospheric-dynamics

en: Backward Trajectories

en: The trajectories are started from surface up to 5000 m altitude, with an equidistant vertical spacing of 200 m, and calculated 120 h backward in time. As long as the trajectories stay in the COSMO1 domain (essentially the Alpine region), as run operationally at MeteoSwiss, the COSMO analysis wind fields are used. When the trajectories leave this domain, they are extended further backward in time based on ECMWF analysis data. The following fields are traced along the trajectories: longitude, latitude, geopotential height, pressure, specific humidity, temperature and surface topography. Furthermore, it is indicated for each trajectory time instance on which model data, COSMO or ECMWF, the trajectory time is based. Finally, the trajectories are started every hour in the specified time period, and positions and fields are available every 10 min. Each day is saved as a separate file. The last 8 digits of the file names indicate the starting date of the trajectories.

en: Backward trajectories were calculated from two positions: Davos Wolfgang (LON: 9.85361, LAT: 46.83551) and Weissfluhjoch (LON: 9.80646 LAT: 46.83304) for the time period February 2 until March 27 2019 using COSMO or ECMWF, respectively.

alps

display_name: alps

atmospheric-dynamics

display_name: atmospheric-dynamics

backward-trajectories

display_name: backward-trajectories

complex-topopgraphy

display_name: complex-topopgraphy

cosmo

display_name: cosmo

lagrangian-analysis

display_name: lagrangian-analysis

raclets

display_name: raclets

en: Backward  Trajectories


en: climate-change water-supply water-scarcity water-demand reservoirs

en: Shapefile of 307 catchments in Switzerland

en: Shapefile of 307 catchments for which estimates of water supply, demand, and reservoir volumes are provided. The OBJECTID entry corresponds to the catchment ID which is used as a reference in the other datasets provided.

en: Water demand version 2 (corrected version)

en: Water supply

en: Simulated discharge series for a reference period 1981-2010 and till the end of the century. Data are provided for 39 climate model chains and a control run based on the observed meteorology. Data are provided at daily resolution (mm/d).

en: Water demand (deprecated)

en:
Warning: please use the corrected version 2, since this file contains errors for certain categories such as Livestock, Industry or Houshold.

Water demand estimates for the 307 medium-sized catchments for different categories for current and future conditions. One text file is provided per demand category. One column corresponds to one catchment (IDs compare to shapefile), The data are provided at monthly resolution in mm/d and can be converted to volumes by using the catchment area. E.g.
Q[mm/d] * catchment area [m²] /1000 = Q[m³/d]
or to obtain discharge in m³/s
Q[mm/d] * catchment area [m²]/1000/24/3600 = Q [m³/s].
Future irrigation and hydropower water demand are provided per climate model chain.

en: Reservoir volumes

en: Reservoir volume for the 307 medium-sized catchments for different storage categories: natural lakes, artificial reservoirs, reservoirs for artificial snow production, drinking water reservoirs, and usable volumes of natural lakes. Unit: Mio m³. One column per catchment (see shapefile).

en:
The dataset Hydro-CH2018 reservoirs provides estimates of current and future water supply, water demand, and storage volumes for 307 medium-sized catchments in Switzerland.
Water supply for current (1981-2010) and future (2070-2099) climate conditions was simulated using the hydrological model PREVAH. For modeling current water supply, observed meteorological time series were used as input, while simulated meteorological time series derived from 39 model chains of the CH2018 initiative were used as an input for simulating future climate conditions.

Water demand was estimated for six categories:

- 1) Drinking water (households and tourism),
- 2) industry (second and third sector),
- 3) artificial snow production,
- 4) agriculture (irrigation and livestock feeding),
- 5) ecology (residual flows), and
- 6) hydropower.

Future estimates consider changes in demand related to population growth and changes in the hydrological conditions.
Storage volumes are provided for natural lakes (storage capacities and usable volumes), artificial reservoirs, reservoirs for artificial snow production, and drinking reservoirs.

A detailed description of the simulation and estimation procedures can be found in

*  Brunner, M.I., Björnsen Gurung, A., Zappa, M., Zekollari, H., Farinotti, D., Stähli, M., 2019. Present and future water scarcity in Switzerland: Potential for alleviation through reservoirs and lakes. Sci. Total Environ. 666, 1033–1047. https://doi.org/10.1016/j.scitotenv.2019.02.169.

This dataset contains the following information:

1.	Shapefile with the 307 medium-sized Swiss catchments.
2.   Textfiles with the water supply simulations for the control run and the 39 climate model chains (one file per chain) at daily resolution for the 307 catchments.
3.	Textfiles with the current and future demand estimates per category at monthly resolution for the 307 catchments.
4.	Textfiles with the storage volumes per category and catchment.

climate-change

display_name: climate-change

reservoirs

display_name: reservoirs

water-demand

display_name: water-demand

water-scarcity

display_name: water-scarcity

water-supply

display_name: water-supply

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Hydro-CH2018 reservoirs


maintainer: Daniela Brito Melo

en: saltation large-eddy-simulations snow-cohesion mixed-grain-transport drifting-snow

en: LES-LSM code

en: Source code used to perform the analysis presented at the research article "Modeling snow saltation: the effect of grain size and interparticle cohesion". The source code is also available at the WSL/SLF GitLab Repository (https://gitlabext.wsl.ch/atmospheric-models/les-lsm).

en: Data in Figures

media_type: zip-compressed folder of csv

en: Simulation results presented in Figures 1 to 11 of the research article "Modeling snow saltattion: the effect of grain size and interparticle cohesion" in csv format.

en:
This dataset includes the parallel application and the main results supporting the research article "Modeling snow saltation: the effect of grain size and interparticle cohesion" published at the Journal of Geophysical Research: Atmospheres.
The code is a flow solver based on the Large Eddy Simulation (LES) technique coupled with a Lagrangian Stochastic Model (LSM). The interaction of snow particles with the bed is modeled with statistical and physically-based models for aerodynamic entrainment, rebound and splash, following the works of Groot Zwaaftink et al. (2014), Comola and Lehning (2017) and Sharma et al. (2018). This algorithm was also used by Sigmund et al. (2021) to model snow sublimation.

drifting-snow

display_name: drifting-snow

large-eddy-simulations

display_name: large-eddy-simulations

mixed-grain-transport

display_name: mixed-grain-transport

saltation

display_name: saltation

snow-cohesion

display_name: snow-cohesion

education

en: Education and science

en: EnviDat: the Environmental Data Portal


lwf-tea-bag-sites

maintainer: Marcus Schaub

title_for_slug: lwf-tea-bag-sites

en: decomposition carbon forest tea-bag modeling verification litter green-tea roiboos

en: Site Information

en: Descriptive information on sites

en:
Decomposition of plant litter is a key process for the transfer of carbon and nutrients in ecosystems. Carbon contained in the decaying biomass is released to the atmosphere as respired CO2, and may contribute to global warming. Litterbag studies have been used to improve our knowledge of the drivers of litter decomposition, but they lack comparability because litter quality is plant species-specific. The use of commercial tea bags as a standard substrate was suggested in order to harmonize studies, where green tea and rooibos represent more labile and more recalcitrant C compounds as surrogates of local litter.
The tea bag approach was implemented on eight sites of the Swiss long-term Forest Ecosystem Research (LWF) network (https://www.wsl.ch/LWF). This allowed us to take advantage from the existing infrastructure and data from a previous litterbag study with local litter. In Beatenberg and Schaenis, additional elevation transects were established (1200-1800 m and 540-1150 m, respectively) to examine particularly the effect of temperature on decomposition. In Pfynwald (https://www.wsl.ch/de/ueber-die-wsl/versuchsanlagen-und-labors/flaechen-im-wald/pfynwald.html) and Salgesch, infrastructure of running projects was used to examine the effect of drought and understory removal, respectively. In Novaggio, tea bags were incubated in summer and winter to study the effect of seasonality particularly precipitation. Tea bags are collected after 3, 12, 24, and 36 months; for the two time-shifted experiments additionally after 6 and 9 months.
The study has two primary objectives. Firstly, it contributes to TeaComposition initiative (http://teacomposition.org/) which aims at investigating long-term litter decomposition and its key drivers at present as well as under different future climate scenarios using a common protocol and standard litter (tea) across nine terrestrial biomes. Secondly, the data are used to further develop decomposition models such as Yasso (http://en.ilmatieteenlaitos.fi/yasso) which is used by several countries, including Switzerland to estimate the annual carbon fluxes in dead wood, litter, and soil for reporting in National Greenhouse Gas Inventories under the United Nations Framework Convention on Climate Change and the Kyoto Protocol.

carbon

display_name: carbon

decomposition

display_name: decomposition

forest

display_name: forest

green-tea

display_name: green-tea

litter

display_name: litter

modeling

display_name: modeling

roiboos

display_name: roiboos

tea-bag

display_name: tea-bag

verification

display_name: verification

en: LWF-Tea bag sites


en: gcos snow snow-height snow-water-equivalent snow-profile

en: DATA ACCESS

media_type: CSV

en: STATION METADATA

en: Snowprofile from 11 observer sites in Switzerland compiled for the Global Climate Observing System (GCOS). Height of snow (cm) and snow water equivalent (mm) are recorded every 2 weeks since the 1947 (depending on station). Attached metadata file gives details of each station.

gcos

display_name: gcos

snow

display_name: snow

snow-height

display_name: snow-height

snow-profile

display_name: snow-profile

snow-water-equivalent

display_name: snow-water-equivalent

en: GCOS SWE data from 11 stations in Switzerland


en: swisstopo open-source swiss-geodata geoinformation-software digital-planning cable-yarding digital-elevation-model seilaplan qgis-plugin

en: View video on youtube!

en: Herunterladen des DHM von swisstopo Website

en:
In order to use the QGIS plugin ‘Seilaplan’ for digital cable line planning, a digital terrain model (DTM) is required. As an alternative to using the ‘Swiss Geo Downloader’ plugin, the DTM can be obtained directly from Swisstopo. In this tutorial we explain step by step how to download the necessary DTM from the Swisstopo Website, and how to use it in QGIS for the digital planning of a cable line using the plugin ‘Seilaplan’. Please note that the tutorial language is German!

Link to the elevation model on the swisstopo website: https://www.swisstopo.admin.ch/de/geodata/height/alti3d.html#technische_details

Link to the rope map website: https://seilaplan.wsl.ch

********************

Für die Verwendung des QGIS Plugins Seilaplan zur digitalen Seillinienplanung ist ein digitales Höhenmodell (DHM) nötig. Als Alternative zum Swiss Geo Downloader erklären wir in diesem Tutorial Schritt für Schritt, wie man das nötige Höhenmodell von der Swisstopo Webseite herunterladen und in QGIS zur Seillinienplanung verwenden kann.

Link zum Höhenmodell auf der swisstopo Webseite: https://www.swisstopo.admin.ch/de/geodata/height/alti3d.html#technische_details

Link zur Seilaplan-Website: https://seilaplan.wsl.ch

cable-yarding

display_name: cable-yarding

digital-elevation-model

display_name: digital-elevation-model

digital-planning

display_name: digital-planning

geoinformation-software

display_name: geoinformation-software

open-source

display_name: open-source

qgis-plugin

display_name: qgis-plugin

seilaplan

display_name: seilaplan

swiss-geodata

display_name: swiss-geodata

swisstopo

display_name: swisstopo

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Seilaplan Tutorial: DTM download from swisstopo website


en: stream-water geochemical-solutes precipitation stable-water-isotopes spatially-distributed-sampling

en: The dataset contains daily measurements of volumes, isotopes and solutes of stream water as well as precipitation measured several locations; meteorological variables are added. Date: 18.07.2019

en:
This dataset contain measurements of solute and stable water isotopes in stream water and precipitation in the Alp catchment and two of its tributaries (between 2015 -2018) . The river Alp is a snow-dominated catchment situated in Central Switzerland characterized by an elevation range from 840 to 1898 m a.s.l. The dataset provides solutes (major anions and cations, trace metals) and stable water isotopes and water fluxes (precipitation rates, discharge) at daily intervals from several sampling locations.
An updated version of the isotope dataset is available here: https://www.doi.org/10.16904/envidat.242

geochemical-solutes

display_name: geochemical-solutes

precipitation

display_name: precipitation

spatially-distributed-sampling

display_name: spatially-distributed-sampling

stable-water-isotopes

display_name: stable-water-isotopes

stream-water

display_name: stream-water

education

en: Education and science

en: EnviDat: the Environmental Data Portal

en: Daily data of solute and stable water isotopes in stream water and precipitation in the Alp catchment, Central Switzerland


maintainer: Anita C. Risch

en: native-plant herbivory non-native-plant grassland weed-management

media_type: XLSX

en: Correction: Data file native and non-native plant interactions in Australian grasslands

en:
taxa tab:	list and overview of all the recorded species

* family:                 family of the plant

* genus:                genus of the plant

* species:                plant species name

* origin:                indicates whether the plant is native to Australia or not (non-native)

* common name:	        common name of the plant species

* functional group:	        functional group of the plant species: forb, graminoid, fern, tree

* functional group detailed:	gives more detail about the type of graminoid and forb: legume, forb (non-leguminous),
                        grass, sedge, rush, fern, tree

* lifeform:                annual or perennial lifeform (species which can have both of these lifeforms where
                        considered as annuals)

plot tab:	list of species found in each plot and their cover (%)

* sampling.session:        provides information about the sampling time:
                        May2020 = data that was collected in May 2020
                        Nov2020 = data that was collected in November 2020

* farm.name:	            name of the farms where the sampling took place:
                        SF = farm of the Southern group
                        NF = farm of the Northern group
                        numbers 1-3 = randomly allocated to the Southern group of farms
                        numbers 4-6 = randomly allocated to the Northern group of farms

* site.type:	                KG: Kangaroo grass dominated site
                        ALG: ALG+KG site (Kangarooo grass and African lovegrass co-dominated site)

* plot.no:                plot number: 9-12

* scientific.name:	        scientific name of the plant species found in a certain plot

* functional group:	        indicates whether the species found is a tree, forb, graminoid or fern

* functional group detailed:	indicates whether the species found is a tree, legume, forb (non-leguminous),
                        grass, sedge, rush, fern

* lifeform:                specifies the lifeform of the species: annual or perennial lifeform
                        (species which can have both of these lifeforms where considered as annuals)

corrections tab:	Detailed description of corrections made in plot.data tab

en:
This dataset contains all data, on which the following publication below is based.

Paper Citation:

_Schlierenzauer, C., Risch, A.C., Schütz, M., Firn, J. 2021. Non-native Eragrostis curvula reduces plant species diversity in pastures of South-eastern Australia even when native Themeda triandra remains co-dominant. Plants 10, 596._

Please cite this paper together with the citation for the datafile.

Study area
The study was conducted in the lowland grassy woodlands of the Bega Valley Region, which is located in the south-east corner of New South Wales, Australia. Embedded between the Pacific Ocean and the Australian Alps, the lowland grassy woodlands are mostly located on granitic substrates and reach elevations of roughly 500 m above sea level. Typically, these grassy woodlands receive less precipitation (mean annual precipitation between 700-1100 mm) compared to the more elevated areas that surround them (NSW Government - Office of Environment and Heritage 2017).
The vegetation is dominated by an open tree canopy layer consisting of Eucalyptus tereticornis Sm, Angophora floribunda Sm. (Sweet) and a range of other eucalypt species. Sometimes shrub or small trees are also present, whereas grasses and forbs form the ground-cover. In areas without intensive agricultural history, this layer is dominated by perennial, tussock grasses such as Themeda triandra Forssk, Microlaena stipoides R.Br (Weeping Grass), Eragrostis leptostachya Steud. (Paddock Lovegrass) and Echinopogon ovatus P.Beauv (Forest Hedgehog Grass). The remaining inter-tussock spaces are occupied by a diversity of growth-restricted grasses and herbaceous forbs (NSW - Department of Planing, Industries and Environment 2019; NSW Government - Office of Environment and Heritage 2017).
Clearing, pasture sowing, fertilizer application and livestock grazing resulted in a dramatic decrease in the extent of these natural woodlands, with less than five percent within conservation reserves and overall, with only about 20% of their original extent in New South Wales still existing (Tozer et al. 2010). The remaining areas outside of reserves are threatened by altered fire frequencies, habitat clearing, livestock grazing and especially by non-native plant invasion, particularly Eragrostis curvula (Schrad.) Nees. For this reason, the grassy woodlands are listed as an endangered ecological community in the NSW state legislation. Additionally, they are considered as critically endangered by the Commonwealth of Australia (Threatened Species Scientific Committee (TSSC) 2013).

Experimental design and sampling
The study was conducted on six farms and in each of them two sites were chosen, representing a paired design. One of the sites at each farm is dominated by native Themeda triandra, the other one co-dominated by non-native Eragrostis curvula and Themeda triandra. All farms are within a radius of approximately 10 km from the town Candelo. Three of the farms are located North (36°40’ to 36°42’ S and 149°38’ to 149°42’ E) and three of them are located South (36°51’ to 36°49’ S and 149°38’ to 149°42’ E) of Candelo.
Non-native herbivores (mainly cattle, sheep and rabbits) and native herbivorous marsupials (mainly kangaroos, wallabies and wombats) are present in the area of these sites. On each site, data was collected within four plots (each 1 x 1 m) in May and November 2020. All plant species found within a plot were recorded and their relative abundance was estimated.

References
NSW - Department of Planing, Industries and Environment. 2019. “Lowland Grassy Woodland in the South East Corner Bioregion - Endangered Ecological Community Listing.” https://www.environment.nsw.gov.au/topics/animals-and-plants/threatened-species/nsw-threatened-species-scientific-committee/determinations/final-determinations/2004-2007/lowland-grassy-woodland-south-east-corner-bioregion-endangered-ecological-community-l (February 18, 2021).
NSW Government - Office of Environment and Heritage. 2017. “Lowland Grassy Woodland in the South East Corner Bioregion - Profile.” https://www.environment.nsw.gov.au/threatenedSpeciesApp/profile.aspx?id=20070 (January 31, 2021).
Threatened Species Scientific Committee (TSSC). 2013. Environment Protection and Biodiversity Conservation Act 1999 (EPBC Act) Conservation Advice for Lowland Grassy Woodland in the South East Corner Bioregion. http://www.environment.gov.au/biodiversity/threatened/communities/pubs/82-conservation-advice.pdf.
Tozer, Mark et al. 2010. “Native Vegetation of Southeast NSW: A Revised Classification and Map for the Coast and Eastern Tablelands.” Cunninghamia : a journal of plant ecology for eastern Australia 11(3): 359–406.

grassland

display_name: grassland

herbivory

display_name: herbivory

native-plant

display_name: native-plant

non-native-plant

display_name: non-native-plant

weed-management

display_name: weed-management

en: Native and no-native plant interactions in Australian grasslands


soil-respiration-exclosure-experiment

title_for_slug: soil-respiration-exclosure-experiment

en: ungulates grazing grassland subalpine soil-respiration

en: Soil respiration Switzerland

en:
ID: Fence number

Year	:Year of sampling

mean.CO2: soil respiration measured with PP-systems SRC-1 soil respriation chamber attached to a EGM-4 infrared gas analyser; units CO2 g m-2 h-1

Grassland: Grasslands where fences were errected. Note that on large grasslands (STAB, GRIM, MING) 2 pairs of fences were errected (2 in short, 2 in tall-grass vegetation), on small grasslands (DADA, MARG, BOTS) only one pair of fences was errected (1 short-grass; one-tallgrass vegetation)

Fence: Fence number; un-even numbers on short-grass vegetation (1,3,5,7,9,11,13,15,17), even numbers on tall-grass vegetation (2,4,6,8,10,12,14,16,18)

Vegetation:	1 = shortgrass vegetation, 2 = tall-grass vegetation (9 replicate fences on each vegetation type)

Treatment	: 1 = all herbivores grazing, 2 = large ungulates (red deer, chamois) excluded

en:
Location of data collection
The Swiss National Park (SNP) is located in the southeastern part of Switzerland, and covers an area of 170 km2, 50 km2 of which is forested, 33 km2 is occupied by alpine and 3 km2 by subalpine grasslands. Elevations range from 1350 to 3170 m a.s.l., and mean annual precipitation and temperature are 871 mm and 0.6°C measured at the Park’s weather station in Buffalora (1980 m a.s.l.) between 1960 and 2009 (MeteoSchweiz 2011). Founded in 1914, the SNP received minimal human disturbance for almost 100 years (no hunting, fishing, or camping, visitors are not allowed to leave the trails). Large (> 1 ha) homogeneous patches of short- and tall-grass vegetation characterize the subalpine grasslands. The average vegetation height of short-grass vegetation is 2 to 5 cm. Red fescue (Festuca rubra L.), quaking grass (Briza media L.) and common bent grass (Agrostis tenuis Sipthrob) are the predominating plant species in this vegetation type. Tussocks of evergreen sedge (Carex sempervirens Vill.) and mat grass (Nardus stricta L.) are predominant in the tall-grass vegetation, which averages 20 cm in vegetation height (Schütz and others 2006). Short-grass vegetation developed in areas where cattle and sheep rested (high nutrient input) during agricultural land-use (from 14th century until 1914); tall-grass vegetation developed in areas where cattle and sheep used to graze, but did not rest (Schütz and others 2003, 2006). Herbivores were shown to consume > 60% of the biomass in short-grass compared to < 20% in tall-grass vegetation (Schütz and others 2006). The herbivore community present in the SNP can be divided into four groups based on body size/weight: large [red deer (Cervus elaphus L.) and chamois (Rupricapra rupricapra L.); 30 - 150 kg], medium [marmot (Marmota marmota L.) and snow hare (Lepus timidus L.); 3 – 6 kg], and small vertebrate herbivores (small rodents: e.g. Clethrionomys spp., Microtus spp., Apodemus spp.; 30 – 100 g) as well as invertebrates (e.g. grasshoppers, caterpillars, cicadas, < 5 g).

Experimental design
We selected 18 subalpine grassland sites (9 short-grass, 9 tall-grass vegetation). The sites were spread across the entire park on dolomite parent material at altitudes of 1975 to 2300 meters. At each site we established an exclosure network (fences) in spring 2009 (early June), immediately after snowmelt. Each exclosure network consisted of a total of five 2 × 3 m sized plots that progressively excluded the different herbivores listed above (further labeled according to the herbivore guilds that had access to the respective plots “All”, “Marmot/Mice/Invertebrates”, “Mice/Invertebrates”, “Invertebrates”, “None”). The “All” treatment was thus accessible to all herbivores, was not fenced and was located at least 5 m away from a 2.1 m tall and 7 × 9 m main fence that enclosed the other four treatments. This fence was constructed of 10 × 10 cm wooden posts and electrical equestrian tape (AGRARO ECO, Landi, Bern, Switzerland; 20 mm width) mounted at 0.7 m, 0.95 m, 1.2 m, 1.5 m and 2.1 m above the ground that were connected to a solar charged battery (AGRARO Sunpower S250, Landi, Bern, Switzerland). We also mounted non-electrically charged equestrian tape at 0.5 m to help exclude deer and chamois, yet allow marmots and hares to enter safely. Within each main fenced area we randomly established four 2 × 3 m plots: (1) The “Marmot/Mice/Invertebrates” plot remained unfenced, thus, with the exception of red deer and chamois, all herbivores were able to access the plot, (2) The “Mice/Invertebrates” plot consisted of a 90 cm high electric sheep fence (AGRARO Weidezaunnetz ECO, Landi, Bern, Switzerland; mesh size 10 × 10 cm) connected to the solar panel and excluded all medium sized mammals (marmots, hares), but provided access for small mammals and invertebrates, (3) The “Invertebrates” plot provided access for invertebrates only and was surrounded by 1 m high metal mesh (Hortima AG, Hausen, Schweiz; mesh size 2 × 2 cm), (4) The “None” plot was surrounded by a 1 m tall mosquito net (Sala Ferramenta AG, Biasca, Switzerland; mesh size 1.5 × 2 mm) to exclude all herbivores. This plot was covered with a roof constructed of a wooden frame lined with mosquito mesh that was mounted on the wooden corner posts. We also treated this plot with a biocompatible insecticide (Clean kill original, Eco Belle GmbH, Waldshut-Tiengen, Germany) when needed to remove insects that might have entered during data collection or that hatched from the soil.

!!! The here published data set only contains data for “All”, and “Marmot/Mice/Invertebrates” (= ungulates excluded) plots !!!

Data collection
In-situ soil CO2 emissions were measured with a PP-Systems SRC-1 soil respiration chamber (closed circuit) attached to a PP-Systems EGM-4 infrared gas analyzer (PP-Systems, Amesbury, MA, USA) on two randomly selected locations on one subplot within each of the 90 plots. For each measurement the soil chamber (15 cm high; 10 cm diameter) was placed on a permanently installed PVC collar (10 cm diameter) driven five centimeters into the soil at the beginning of the study (June 2009). The measurements were conducted between 0900 and 1700 hours every two weeks from early to early September 2009, 2010, 2011 and 2013. Freshly germinated plants growing within the PVC collars were removed prior to each measurement to avoid measuring plant respiration/photosynthesis. The two measurements collected per plot every two weeks were averaged.

Please acknowledge the funding of the study: funded by the Swiss National Science Foundation, SNF grant-no 31003A_122009/1 to Anita C. Risch, Martin Schütz and Flurin Filli

grazing

display_name: grazing

soil-respiration

display_name: soil-respiration

subalpine

display_name: subalpine

ungulates

display_name: ungulates

en: Soil respiration - exclosure experiment


maintainer: Sebastian Schlögl

en: turbulent-sensible-heat-fluxes atmospheric-turbulence atmosphere stable-boundary-layer snow

en: Turbulence data WFJ07

en: lower sensor

en: Turbulence data AA00

en: sensor in 0.2 m height

en: Turbulence data PM07

en: NWW

en: Turbulence data GR00

en: sensor in 2 m height

en: sensor in 1 m height

en: upper sensor

en: sensor in 25 m height

en: SEE

en: Turbulence data WFJ11

en:
We used five different atmospheric turbulence datasets from four test sites, with these sites showing differences in their topographical characteristics. We chose one typical alpine test site with high topographical complexity (Weissfluhjoch, Davos, Switzerland) and three test sites consisting of one glacier site (Plaine Morte, Crans-Montana, Switzerland) and two polar sites (Greenland and Antarctica) representing a quasi-ideal site with homogeneous surface and quasi infinite fetch in all directions.
The turbulent sensible heat flux was calculated using the eddy-covariance method. Note that the sonic temperature fluctuations have been converted into virtual temperature fluctuations.
Three-dimensional wind velocity and air temperature were processed using a linear detrending (Rannik and Vesala, 1999) and a planar fit approach (Massmann and Lee, 2002) to rotate the coordinate system. Air temperature, relative humidity and air pressure from weather stations were used to calculate air properties, which are required for the data processing. The weather stations are located in the immediate vicinity of the turbulence tower and are affected by the same air masses. Turbulence data were averaged to 30-min intervals, whilst changing to a 15-min time interval marginally affects the heat fluxes at the Weissfluhjoch test site (Mott et al., 2011). Note that we define a negative sensible heat flux as being directed towards the snow surface and a positive sensible heat flux as being directed upwards.
The selected datasets and corresponding test sites are briefly introduced below:

Weissfluhjoch 2007 (WFJ07): A vertical set-up of two three-dimensional ultrasonic anemometers (CSAT3, Campbell Scientific, Inc.) was used at the traditional field site Weissfluhjoch (2540 m asl.) to measure three-dimensional wind velocity and air temperature at a frequency of 20 Hz. The sensors were mounted 3 m and 5 m above the ground and provided reliable data for 50 days between 11 February 2007 and 24 April 2007. Further information on the field campaign can be found in Stössel et al. (2010) and Mott et al. (2011).

Weissfluhjoch 2011-13 (WFJ11): Three-dimensional wind velocity and air temperature were recorded at 5 m above the ground at a frequency of 10 Hz with a three-dimensional ultrasonic anemometer (CSAT3). The analysis was conducted for data obtained between February and March in the years 2011-13.

Plaine Morte 2007 (PM07): Two three-dimensional ultrasonic anemometers (CSAT3) were installed on a horizontal boom facing opposite directions (west-north-west vs. east-south-east) at 3.75 m above the ground to measure air temperature and three-dimensional wind velocity at 20 Hz. The data were collected at the almost flat field site on the Plaine Morte glacier (2750 m asl.) near Crans-Montana, Switzerland from February to April 2007. High quality meteorological data were additionally recorded and used to force the model. A detailed description about the set-up at the Plaine Morte glacier can be found in Huwald et al. (2009) and Bou-Zeid et al. (2010).

Greenland 2000 (GR00): High-frequency three-dimensional ultrasonic anemometer measurements (CSAT3) were recorded at 50 Hz at the Summit Camp (72.3 °N, 38.8 °W, 3208 m asl.) located on the northern dome of the Greenland ice sheet. Data were collected at 1 m and 2 m above the snow surface during summer in 2000 and 2001. Additionally, meteorological measurements were obtained for the post processing and used to force the model. More information about the field campaign can be found in Cullen et al. (2007, 2014).

Antarctica 2000 (AA00): A set-up of three vertical three-dimensional ultrasonic anemometers (DA-600, Kaijo Denki) were installed at Mizuho Station (70°42' S, 44°20' E, 2230 m asl.) in Eastern Antarctica at 0.2, 1 and 25 m and recorded turbulence data at a frequency of 100 Hz from October to November 2000. Longwave and shortwave radiation, relative humidity, air and snow surface temperature were additionally measured and used to force the model. More information about the field campaign can be found in Nishimura and Nemoto (2005).

atmosphere

display_name: atmosphere

atmospheric-turbulence

display_name: atmospheric-turbulence

snow

display_name: snow

stable-boundary-layer

display_name: stable-boundary-layer

turbulent-sensible-heat-fluxes

display_name: turbulent-sensible-heat-fluxes

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: How do stability corrections perform in the stable boundary layer over snow?


maintainer: Joan Casanelles Abella

en: dna-metabarcoding osmia-cornuta chelostoma-florisomne trap-nest osmia-bicornis hylaeus-communis antwerp zurich poznan paris urban-ecology cavity-nesting-bees plant-pollinator-interactions tartu

en: Larval food composition

en: Explanation data variables

en: Urbanization poses threats and opportunities for the biodiversity of wild bees. A main gap relates to the food preferences of wild bees in urban ecosystems, which usually harbour large numbers of plant species, particularly at the larval stage. This data sets describes the larval food of four wild bee species (i.e. Chelostoma florisomne, Hylaeus communis, Osmica bicornis and Osmia cornuta) and three genera (i.e. Chelostoma sp., Hylaeus sp, and Osmia sp.) common in urban areas in five different European cities (i.e. Antwerp, Paris, Poznan, Tartu and Zurich). This data results from a European-level study aimed at understanding the effects of urbanization on biodiversity across different cities and citiscapes, and a Swiss project aimed at understanding the effects of urban ecosystems in wild bee feeding behaviour. Wild bees were sampled using standardized trap-nests in 80 sites (32 in Zurich and 12 in each of the remaining cities), selected following a double gradient of available habitat at local and landscape scales. Larval pollen was obtained from the bee nests and identified using DNA metabarconding. The data provides the plant composition at the species or genus level of the different bee nests of the studied species in the studied sites of the five European cities. For Hylaeus communis, this is the first study in reporting larval food composition.

antwerp

display_name: antwerp

cavity-nesting-bees

display_name: cavity-nesting-bees

chelostoma-florisomne

display_name: chelostoma-florisomne

dna-metabarcoding

display_name: dna-metabarcoding

hylaeus-communis

display_name: hylaeus-communis

osmia-bicornis

display_name: osmia-bicornis

osmia-cornuta

display_name: osmia-cornuta

paris

display_name: paris

plant-pollinator-interactions

display_name: plant-pollinator-interactions

poznan

display_name: poznan

tartu

display_name: tartu

trap-nest

display_name: trap-nest

urban-ecology

display_name: urban-ecology

zurich

display_name: zurich

education

en: Education and science

en: EnviDat: the Environmental Data Portal

en: Larval food composition of four wild bee species in five European cities


en: timeseries climate maximum-temperature air-temperature free-climate-data century minimum-temperature climate-layers precipitation

en: CHELSA Technical Documentation

en: As the CHELSA project is continuously expanded, certain new parameters, time scales etc. are not included anymore in the original publication (Karger et al. 2017). We are therefore provide this document as a guideline of the current climatic parameters available and will expand it as new parameters or time periods will become available. Please refer to the version history for changes made in the document.

en: Data Access

en:
CHELSAcruts is a delta change monthly climate dataset for the years 1901-2016 for mean monthly maximum temperatures, mean monthly minimum temperatures, and monthly precipitation sum. Here we use the delta change method by B-spline interpolation of anomalies (deltas) of the CRU TS 4.01 dataset. Anomalies were interpolated between all CRU TS grid cells and are then added (for temperature variables) or multiplied (in case of precipitation) to high resolution climate data from CHELSA V1.2 (Karger et al. 2017, Scientific Data). This method has the assumption that climate only varies on the scale of the coarser (CRU TS) dataset, and the spatial pattern (from CHELSA) is consistent over time. This is certainly a rather crude assumption, and for time periods for which more accurate data is available CHELSAcruts should be avoided if possible (e.g. use CHELSA V1.2 for 1979-2015). Different to CHELSA V1.2, CHELSAcruts does not take changing wind patterns, or temperature lapse rates into account, but rather expects them to be constant over time, and similar to the long term averages.

CHELSAcruts is licensed under a Creative Commons Attribution 2.0 Generic (CC BY 2.0) license.

air-temperature

display_name: air-temperature

century

display_name: century

climate

display_name: climate

climate-layers

display_name: climate-layers

free-climate-data

display_name: free-climate-data

maximum-temperature

display_name: maximum-temperature

minimum-temperature

display_name: minimum-temperature

precipitation

display_name: precipitation

timeseries

display_name: timeseries

en: CHELSAcruts -  High resolution temperature and precipitation timeseries for the 20th century and beyond


weather-station-klosters

maintainer: Maxime Hervo

title_for_slug: weather-station-klosters

en: klosters precipitation raclets wind temperature weather

en: Weather Station Klosters

en: All in one weather station measuring temperature (°C), humidity (%), wind (m s‾ ¹) and precipitation type. The time format is: number of days from January 0, 0000, UTC.

en: A weather station (Lufft WS600) measured meteorological parameters at Klosters (LON: 9.880413, LAT: 46.869019). Detailed information on the specifications can be found [here](https://www.lufft.com/products/compact-weather-sensors-293/ws600-umb-smart-weather-sensor-1832/productAction/outputAsPdf/).

klosters

display_name: klosters

raclets

display_name: raclets

temperature

display_name: temperature

weather

display_name: weather

wind

display_name: wind