en: empirical-mortality-models forest-reserves tree-mortality tree-growth inventory-data

en: Calibration data

en:
A set of three consecutive inventories was used to generate records for the calibration of mortality models based on trees that were alive in the first and second inventory and either dead or alive in the third inventory.

 Meta data
Reserve: Name of the forest reserve

Plot: Permanent plot number

 Tree data
Species: Latin species name (or species group, cf. _Quercus_ spp.)

y: Status of the tree with 0 = alive and 1 = dead

dt: Length of the mortality period (years)

DBH: Diameter at breast height (mm) of the second inventory

relBAI: Annual relative basal area increment (-) calculated based on the first and the second DBH measurement as the compound annual growth rate of the trees basal area

 Stand data
_All stand variables were calculated for the second inventory._

mDBH: Mean diameter at breast height (mm)

iqrDBH: Interquartile range of diameter at breast height (mm)

BA: Basal area per hectare (m2 ha-1)

N: Number of trees per hectare (ha-1)

 Climate data
_Both climate variables were calculated for the period between the second and the third inventory._

P: Mean annual precipitation sum (mm)

mT: Mean annual air temperature (°C)

en:
The dataset comprises > 90 000 records from inventories in 54 strict forest reserves in [Switzerland](https://www.wsl.ch/de/wald/biodiversitaet-naturschutz-urwald/naturwaldreservate.html) and [Lower Saxony / Germany](http://naturwaelder.de/) along a considerable environmental gradient. It was used to develop parsimonious, species-specific mortality models for 18 European tree species based on tree size and growth as well as additional covariates on stand structure and climate.

 Inventory data
Measurements had been conducted repeatedly on up to 14 permanent plots per reserve for up to 60 years with re-measurement intervals of 4 - 27 years. The permanent plots vary in size between 0.03 and 3.47 ha. The inventories provide diameter measurements at breast height (DBH) and information on the species and status (alive or dead) of trees with DBH ≥ 4 cm for Switzerland and ≥ 7 cm for Germany.

 Data selection
We excluded three permanent plots where at least 80 % of the trees died during an interval of 10 years, and mortality could be clearly assigned to a disturbance agent. Mortality in the remaining stands was rather low, with a mean annual mortality rate of 1.5 % and strong variation between plots from 0 to 6.5 % (assessed for trees of all species with DBH ≥ 7 cm).
We only used data from permanent plots with at least 20 trees per species to obtain reliable plot-level mortality rates even for species with low mortality rates (about 5 % during 10 years), and selected tree species occurring on at least 10 plots to cover sufficient ecological gradients. This led to a dataset of 197 permanent plots and 18 tree or shrub species: _Abies alba_ Mill., _Acer campestre_ L., _Acer pseudoplatanus_ L., _Alnus incana_ Moench., _Betula pendula_ Roth, _Carpinus betulus_ L., _Cornus mas_ L., _Corylus avellana_ L., _Fagus sylvatica_ L., _Fraxinus excelsior_ L., _Picea abies_ (L.) Karst, _Pinus mugo_ Turra, _Pinus sylvestris_ L., _Quercus pubescens_ Willd., _Quercus_ spp. (_Q. petraea_ Liebl. and _Q. robur_ L.; not properly differentiated in the Swiss inventories), _Sorbus aria_ Crantz, _Tilia cordata_ Mill. and _Ulmus glabra_ Huds..

 Predictors of tree mortality
We considered tree size and growth as key indicators for mortality risk. Radial stem growth between the first and second inventory and DBH at the second inventory were used to predict tree status (alive or dead) at the third inventory. To this end, the annual relative basal area increment (relBAI) was calculated as the compound annual growth rate of the trees basal area. Additional covariates on stand structure and climate comprise mean annual precipitation sum (P), mean annual air temperature (mT), the mean and the interquartile range of DBH (mDBH, iqrDBH), basal area (BA) and the number of trees (N) per hectare.

 Further information
For further information, refer to Hülsmann _et al_. (in press) How to kill a tree – Empirical mortality models for eighteen species and their performance in a dynamic forest model. _Ecological Applications_.

empirical-mortality-models

display_name: empirical-mortality-models

forest-reserves

display_name: forest-reserves

inventory-data

display_name: inventory-data

tree-growth

display_name: tree-growth

tree-mortality

display_name: tree-mortality

en: Calibration data for empirical mortality models of 18 European tree species


maintainer: Tessa Hegetschweiler

en: forest childhood adolescents teenagers recreational-activities

state: active

type: dataset

en: Dataset comments

en: The codebook to the dataset

format: XLS

en: Dataset survey at schools

en: The dataset of the questionnaire survey at schools in excel format.

en: Survey at schools 2017

en: The dataset of the questionnaire survey at schools in SPSS-format.

format: SERVICE

en: Questionnaire school survey

media_type: application/pdf

en: The questionnaire used in the survey at 8 schools aimed at teenagers in German.

format: PDF

mimetype: application/pdf

en: The data results from a questionnaire survey conducted at 8 schools in the cantons Zurich, Aargau and St. Gallen. Respondents aged 13-22 years. The aim of the survey was to gain insight into teenagers' relationship to the forest, reasons for visiting or not visiting the forest and activities in the forest.

adolescents

display_name: adolescents

childhood

display_name: childhood

forest

display_name: forest

recreational-activities

display_name: recreational-activities

teenagers

display_name: teenagers

education

fr: Education, science

de: Bildung, Wissenschaft

en: Education and science

it: Formazione e scienza

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Factors influencing teenagers' forest visit frequency


maintainer: Alexandre Buttler

en: climate-change biogeochemisty silvopastoral-systems soil transplantation-experiment

en: Dataset

media_type: application/zip

en: Zip archive of all datasets detailed in study.

format: ZIP

mimetype: application/zip

en:
Silvopastoral systems are highly productive and combine long-term wood production with annual provision of forage for livestock. In the Swiss Jura Mountains these systems are a key component of the landscape. As in other cold biomes, climate change can potentially accelerate landscape change within these historically sustainable systems.

In order to anticipate the evolution of subalpine wooded pasture ecosystems under future climate and land-use changes, this project focused on the interplay between soil, vegetation and climate. It was aimed at providing experimental evidence for chief ecosystem processes, with emphasis on the quality of the ecosystem services provided. The main interest was placed on vegetation turf resistance to climate change along an unwooded – sparsely wooded - densely wooded pasture gradient (land-use intensity), where plant productivity, diversity and succession along with rates of carbon cycling and microbial activity provided measures of ecosystem functioning at both plot and landscape level.

Experimental transplantation of monolith soil turfs to lower altitudes allowed to simulate soil warming and reduced annual precipitation. In order to simulate a year-round warmer and drier climate the natural climate variation along an altitudinal gradient was used as a proxy. The aim was to simulate realistic climate change scenarios for the second half of the 21st century predicted by the IPCC report and downscaled for Switzerland providing regionalized interpolated projections integrating therein trends for temperature increase and precipitation decrease. By using permanent meteorological stations within the network of the Federal Office of Meteorology and Climatology (MeteoSwiss), we obtained high resolution regional data on the variation of mean annual temperature (MAT) and mean annual precipitation (MAP) in relation to altitude in the Swiss Jura Mountains. We observed a general increase of +0.5 K in MAT and a decrease of -20 % MAP for each 100 m decrease in altitude along the SE slope of the Swiss Jura Mountains. These relationships served for the selection of the transplantation sites such that in comparison to a control site at 1350 m a.s.l. (Combe des Amburnex, N 46°54’, E 6°23’) a +2 K MAT and -20 % MAP was achieved at 1010 m a.s.l. (Saint-George, N 46°52’, E 6°26’), a +4 K MAT and -40 % MAP at 570 m a.s.l., (Arboretum d’Aubonne, N 46°51’, E 6°37’), and a +5 K MAT and -50 % MAP at 395 m a.s.l. (Les Bois Chamblard, N 46°47’, E 6°41’). The two stations at 1010 m a.s.l. and 570 m a.s.l. corresponded to the IPCC scenario A1B for a moderate increase in greenhouse gas emissions and to scenario A2 for a high increase in greenhouse gas emissions, respectively. The station at 395 m a.s.l. was chosen to represent an extreme scenario with climate variables lying at the positive tail distribution of model predictions under the A2 scenario.

Soil cores were assembled into rectangular PVC boxes of 60  80 cm2 size and of 35 cm height. All mesocosms were dug down to surface level into previously prepared trenches in the ground thus preventing lateral heat exchange with the atmosphere. Since at each site the mesocosms were placed in a common garden with no light interception, mesocosms with turfs from the two wooded pastures were shaded from direct sun light to simulate the natural light conditions in the corresponding habitats. Each mesocosm was equipped with a drainage system and was connected to a water tank thus representing a zero potential lysimeter collecting soil solution and precipitation/snowmelt runoff. ECH2O EC-TM sensor probes coupled to Em50 data-loggers (Decagon Devices, Inc., USA) recorded soil temperature and volumetric water content in each mesocosm at the top-soil (0 to -3 cm) every minute and data were averaged over one hour intervals. Climate parameters at each transplantation site were monitored continuously throughout the experiment by means of automated weather stations (Sensor Scope Sàrl, Switzerland), measuring rain precipitation (non-heated tipping bucket gauges) and air temperature and humidity 2 m above the ground surface at one minute intervals.

A list of above- and belowground variables were measured to assess the resilience of biogeochemical processes, plant productivity, tree regeneration, and carbon sequestration for each respective land-use practice. Furthermore, the experimental data were used to improve on (parameterization) the existing spatially explicit, dynamic model WoodPaM and refine the modelʼs climatic and land-use variables so that different scenarios of climate change and land use change could be simulated. Natural and management induced disturbance patterns were incorporated into the model.
The data have been made available within the project CCES Mounted. The climate stations Sensorscope are still in use within the project CLIMARBRE (Wald und Klimawandel, WSL/BAFU).

#References

1. Puissant, J., Cécillon, L., Mills, R.T.E., Robroek, B.J.M. Gavazov, K., De Danieli, S., Spiegelberger, T., Buttler, A., Brun, J.J. 2015. Seasonal influence of climate manipulation on microbial community structure and function in mountain soils. Soil Biology and Biochemistry 80: 296–305.
2. Mills, R., K. Gavazov, T. Spiegelberger, D. Johnson and A. Buttler 2014. Diminished soil functions occur under simulated climate change in a sup-alpine pasture, but heterotrophic temperature sensitivity indicates microbial resilience. Science of the Total Environment, vol. 473–474(0): 465-472.
3. Gavazov, K., Spiegelberger, T. and Buttler, A. 2014. Transplantation of subalpine wood-pasture turfs along a natural climatic gradient reveals lower resistance of unwooded pastures to climate change compared to wooded ones. Oecologia (174) : 1425-1435.
4. Peringer A., Siehoff S., Chételat J., Spiegelberger T., Buttler A. & Gillet F. 2013. Past and future landscape dynamics in pasture-woodlands of the Swiss Jura Mountains under climate change. Ecology and Society, 18, 3: 11. DOI: 10.5751/ES-05600-180311. [online] URL: http://www.ecologyandsociety.org/vol18/iss3/art11/
5. Gavazov, K. S., A. Peringer, A. Buttler, F. Gillet and T. Spiegelberger. 2013. Dynamics of Forage Production in Pasture-woodlands of the Swiss Jura Mountains under Projected Climate Change Scenarios. Ecology and Society 18 (1): 38. [online] URL: http://www.ecologyandsociety.org/vol18/iss1/art38/

biogeochemisty

display_name: biogeochemisty

climate-change

display_name: climate-change

silvopastoral-systems

display_name: silvopastoral-systems

soil

display_name: soil

transplantation-experiment

display_name: transplantation-experiment

en: Biogeochemical data from a transplantation experiment of monolith soil turfs along an altitudinal gradient to simulate climate change scenarios


maintainer: EnviDat Support

en: snow advection metamorphism stable-water-isotope 18o

en: Data files and read-me

en: raw data and micro-CT data available from contacts

en: Read-me

media_type: text/plain

en: A short description of the data contained in the zipped-file. Recommended for reading before downloading the dataset.

format: TXT

mimetype: text/plain

en:
Stable water isotopes (δ18O) obtained from snow and ice samples of polar regions are used to reconstruct past climate variability, but heat and mass transport processes can affect the isotopic composition. Here we present an experimental study on the effect on the snow isotopic composition by airflow through a snow pack in controlled laboratory conditions. The influence of isothermal and controlled temperature gradient conditions on the δ18O content in the snow and interstitial water vapor is elucidated. The observed disequilibrium between snow and vapor isotopes led to exchange of isotopes between snow and vapor under non-equilibrium processes, significantly changing the δ18O content of the snow. The type of metamorphism of the snow had a significant influence on this process.
Ebner, P. P., Steen-Larsen, H. C., Stenni, B., Schneebeli, M., and Steinfeld, A.: Experimental observation of transient δ18O interaction between snow and advective airflow under various temperature gradient conditions, The Cryosphere Discuss., https://doi.org/10.5194/tc-2017-16, accepted, 2017.

advection

display_name: advection

metamorphism

display_name: metamorphism

snow

display_name: snow

stable-water-isotope

display_name: stable-water-isotope

en: Experiments on stable water isotopes,  snow metamorphism, and advection


en: yellowstone wolf decomposition biogeochemical-cycling soil-biodiversity bacteria fungi carcass detritus carrion

en:
Site	ID for different carcasses across the Yellowstone Landscape
Location	Sampling location, either under carcass or control plot
Species	Indicating whether carcass was from bison or elk
Gender	Gener of carcass; F = female, M = male, ? = unknown
Lat	Latitude
Long	Longitude
DSK	Days since kill; in days
Soil.N	Soil N concentration (%)
Soil.C	Soil C concentration (%)
Veg.C	Vegetation C concentration (%); dominant grasses sampled
Veg.N	Vegetation N concentration (%); dominant grasses sampled
Veg.CtoN	Vegetation C to N ratio; dominant grasses sampled
Soil.resp	Soil respiration (g m-2 h-1)
soil.temp	Soil temperature (°C)
Soil.moist	Soil moisture (volumentric; %)
CRR	Cotton rotting rate
bacteria.richness	Bacteria richness
bacteria.diversity	Bacteria diverstiy
fungi.richness	Fungi richness
fungi.diversity	Fungi diversity
bacteria.abundance	Bacteria abundance
fungi.abundance	Fungi abundance

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch, A.C., Frossard, A., Schütz, M., Frey, B., Morris, A.W., Bump, J.K. (accepted) Effects of elk and bison carcasses on soil microbial communities and ecosystem functions in Yellowstone, USA. (accepted). Functional Ecology
doi: ...

Methods
Study area and study sites
This study was conducted in YNP’s Northern Range (NR), located in north-western Wyoming and south-western Montana, USA (~44.9163° N, 110.4169° W). The NR expands over ~1000 km2 and features long cold winters and short dry summers. Grasslands and shrublands dominate the NR that is the home of large migratory herds of bison (winter counts 2017: ~3919 individuals; Geremia, Wallen, & White, 2017) and elk (~5349 individuals) as well as their main predators, approximately five packs of wolves with a total of 33 individuals (Smith et al., 2017). As part of a long-term research program within YNP, wolf predation has been studied since their reintroduction in 1995.
For our study, we received ground-truthed coordinates of bison and elk carcasses from winter 2016/17 (November 2016 through April 2017) from the YNP Wolf Project. Between June 20 and July 1, 2017, we visited 24 carcasses in total. At five sites, we could not sample as the carcasses were no longer found. In total we located remains (hairmats, rumen content, bones, teeth) of 19 adult male and female carcasses (7 bison, 12 elk; Supplementary Table 1). Live body weights of adult bison and elk are approximately 730 kg (male bison), 450 kg (female bison), 330 kg (male elk), and 235 kg (female elk, Meagher, 1973; Quimby & Johnson, 1951).
The kills and subsequent consumption happened between 34 and 173 days prior to our sampling (hereafter “days since kill”, DSK), for which we accounted in our statistics. Note that wolves and other scavengers consumed the soft tissue of the carcasses quickly, hence, there is close to no soft tissue left for decomposition as compared to an intact body left on the soil surface. The 19 carcass sites covered the extent of YNP’s NR, with both bison and elk carcasses showing similar distributions; elevation ranged from 1703 to 2884 m a.s.l. (Supplementary Fig 1 & Supplementary Table 1). The carcasses were all located in grassland or sage-brush shrubland, with or without sparsely scattered trees, and both bison and elk carcasses showed the same distribution of DSK. At each study site, we selected a reference plot (hereafter “control”) that was of comparable size, slope aspect and vegetation to the carcass location (hereafter “carcass”). The control was at least 10 m away (Danell, Berteaux, & Brathen, 2002; Melis et al., 2007) from the carcass itself to ensure the absence of potential direct and indirect carcass effects (paired design; (Bump, Webster, et al., 2009; Bump, Peterson, et al., 2009).

Ecosystem functions and soil properties
We randomly collected 50 g of mineral soil from three locations on both control and carcass plots to a depth of 5 cm with sterile techniques and gently mixed the material to obtain a composite sample. Half the soil sample was immediately bagged in plastic bags (whirl packs), stored in a cooler with ice packs (~5 ºC), sieved (2-mm) and frozen within 4-6 hours of collection to assess soil microbial communities. For this purpose, we extracted total genomic DNA from 0.5 g soil using the PowerSoil DNA Isolation Kit (Qiagen, Hilden, Germany). DNA concentrations were measured using PicoGreen (Molecular Probes, Eugene, OR, USA). PCR amplifications of partial bacterial small-subunit ribosomal RNA genes (region V3–V4 of 16S rRNA) and fungal ribosomal internal transcribed spacers (region ITS2) were performed as described previously (Frey et al., 2016). Each sample consisting of 40 ng DNA was amplified in triplicate and pooled before purification with Agencourt AMPure XP beads (Beckman Colter, Berea, CA, USA) and quantified with the Qubit 2.0 fluorometric system (Life Technologies, Paisley, UK). Amplicons were sent to the Genome Quebec Innovation Center (Montreal, Canada) for barcoding using the Fluidigm Access Array technology and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, CA, USA).
Quality control of bacterial and fungal reads was performed using a customized pipeline (Supplementary Table 2; Frey et al., 2016). Paired-ends reads were matched with USEARCH (Edgar & Flyvbjerg, 2015), substitution errors were corrected using Bayeshammer (Nikolenko, Korobeynikov, & Alekseyev, 2013) and PCR primers were trimmed (allowing for 1 mismatch, read length >300 bp for 16S and >200 bp for ITS primers) using Cutadapt (M. Martin, 2011). Sequences were dereplicated and singleton reads removed prior to clustering into operational taxonomic units (OTUs) at 97% identity using USEARCH (Edgar, 2013). The remaining centroid sequences were tested for the presence of ribosomal signatures using Metaxa2 (Bengtsson-Palme et al., 2015) or ITSx (Bengtsson-Palme et al., 2013). Taxonomic assignments of the OTUs were obtained using Bayesian classifier (Wang, Garrity, Tiedje, & Cole, 2007) with a minimum bootstrap support of 60% implemented in mothur (Schloss et al., 2009) by querying the bacterial and fungal reads against the SILVA Release 128 (Quast et al., 2013) and UNITE 8.0 (Abarenkov et al., 2010) reference databases for 16S and ITS OTUs, respectively.
Abundances of the bacterial 16S rRNA gene and fungal ITS amplicon were determined by quantitative real-time PCR (qPCR) on an ABI7500 Fast Real-Time PCR system (Applied Biosystems, Foster City, CA, USA) as described previously (Frossard et al., 2018). The same primers (without barcodes) and cycling conditions as for the sequencing approach were used for the 16S and ITS qPCR. Three standard curves per target region were obtained using tenfold serial dilutions of plasmids generated from cloned targets (Frey, Niklaus, Kremer, Lüscher, & Zimmermann, 2011). Data were converted to represent mean copy number of targets per gram of soil (dry weight).
The other half of the soil sample was bagged in paper, dried to constant weight at 60°C, passed through a 2 mm sieve and analyzed for total C and N concentration with a CE Instruments NC 2100 soil analyzer (CE Elantech Inc., Lakewood NJ, USA). We also collected 20 mature and undamaged leaves of the dominant grass species growing on control and carcass sites, but taxa were not recorded. The plant material was dried at 60°C, finely ground till homogenized and also analyzed to obtain total C and N concentrations. Soil temperature (10 cm depth) was measured with a waterproof digital thermometer (Barnstead International, Dubuque IA, USA) at three locations each at the control and carcass site. Soil moisture (0 – 10 cm depth) was measured with time domain reflectometry (Field-Scout TDR-100; Spectrum Technologies, Plainfield IL, USA) at five randomly chosen points on control and carcass sites. We measured soil respiration at five randomly chosen points at both control and carcass sites with a PP-Systems SRC-1 soil respiration chamber (closed circuit) attached to a PP-Systems EGM-4 infrared gas analyzer (PP-Systems, Amesbury, MA, USA). For each measurement the soil chamber (15 cm high; 10 cm diameter) was tightly placed on the soil surface, after clipping plants to avoid measuring plant respiration or photosynthesis. Measurements were conducted over 120 s.
In addition, we assessed the decomposition rates of standardized OM using the cotton strip assay (Latter & Howson, 1977; Latter & Walton, 1988). Cotton cloth tensile strength loss (CTSL) is a measure of decomposition, and an index to express the combined effect of soil microclimatic, physical, chemical and biological properties on decomposition while accounting for OM quality (Latter & Walton, 1988; Risch, Jurgensen, & Frank, 2007; Withington & Sanford Jr., 2007). We placed five 20 cm wide x 13 cm long sheets of 100% unbleached cotton cloth (American Type SM 1/18’’, Warp: 34/1, Weft: 20/1, Weave plain, 29.5 picks/cm warp, 22 picks/cm weft, 237 g/m2; Daniel Jenny & Co., Switzerland;) at each carcass and control site vertically into the soil by making slits with a flat spade to a depth of 12 cm. We inserted each cloth with the spade, and then pushed the slit closed to assure tight contact with the soil. The cloths were retrieved after 18 to 27 days. After retrieval, the cloths were air-dried, remaining soil gently removed by hand, and 1.5 cm wide strips were cut at the 3.5-5.0 cm (top) and the 9-10.5 cm (bottom) soil depth. The strips were equilibrated at 50 % relative humidity and 20°C for 48 hours (climate chamber) prior to strength testing (Scanpro Awetron TH-1 tensile strength tester; AB Lorentzen and Wettre, Kista, Sweden). Cotton rotting rate (CRR) = (CTScontrol - CTSfinal/CTSfinal)1/3 * (365/t), where CTScontrol is the cotton tensile strength of a control cloth and CTSfinal the cotton tensile strength of the incubated sample, t is the incubation period in days. Control cloths were inserted into the ground and immediately retrieved to account for tensile strength loss associated with cloth insertion. We averaged the CRR of top and bottom strips for further analyses as no difference was found between the two. All sampling and cloth insertion took place between June 20 and July 1, 2017, cloths were retrieved between July 17 and 20, 2017. Soil respiration, average CRR, vegetation N concentration and vegetation C:N ratio are defined as ecosystem functions, soil C and N concentration, soil temperature and moisture as soil abiotic properties, and bacterial and fungal richness (number of taxa), diversity (Shannon) and abundance as soil biotic properties.

Statistical analyses
Univariate analyses for ecosystem functions, soil biotic and abiotic properties
We tested whether individual ecosystem functions, soil biotic and abiotic properties differed between carcass and control (“Location”), bison and elk (“Species”) and days since kill (“DSK”). For this purpose, we used linear mixed effect models (LMM, “nlme” package v 3.1 – 131.1 in R v 3.4.4; Pinheiro, Bates, DebRoy, & Sarkar, 2018; R Core Team, 2019) with Location, Species, Location x Species and DSK as fixed effects. Site was included as random effect to account for the paired design. We developed a separate model for all dependent variables. All but bacterial richness, fungal richness, fungal diversity and vegetation N concentration were natural-log transformed to meet model assumptions. For each LMM, we calculated contrasts to assess the specific comparisons we were interested in with the “lsmeans” package v 2.27-62 (Lenth & Love, 2018): 1) carcass vs control, 2) carcass bison vs control bison, and 3) carcass elk vs control elk. We also tested whether we had differences between bison and elk carcasses or the sites where bison and elk were killed and included contrasts 4) carcass bison vs carcass elk and 5) control bison vs control elk.
We calculated the log response ratio (LRR = ln[carcass/control]) to obtain carcass effects for all variables for both species separately. LRR < 0 indicates higher value at control compared to carcass, LRR > 0 indicates higher values at carcass compared control. We used LRRs for visualization and to assess spatial patterns in carcass effects across YNP. For this purpose we calculated the Moran’s I statistic for each ecosystem function, soil biotic and abiotic property based on a latitude-longitude matrix with the “moran.test” function in the “spdep” package version 1.1-3 (Bivand et al., 2019).
Multivariate analyses
Rare OTUs, defined as OTUs with a low abundance of reads, were retained in multivariate methods because they only marginally influence these analyses (Gobet, Quince, & Ramette, 2010). Bray–Curtis dissimilarity matrices were generated based on square-root-transformed matrices. We used Principal Coordinate Analyses (PCoA) to assess how soil bacterial and fungal communities differed between control and carcass of bison and elk (“vegan” package v 2.5-4, Oksanen et al., 2019). We then extracted PCoA axes scores 1 and 2 and used LMM (“nlme” package) with Location, Species, Location x Species and DSK as fixed effects. Site was, again, included as random effect. We again calculated the contrasts as described above using the “lsmeans” package. We also assessed how ecosystem functions, and soil abiotic and biotic properties were related to the soil bacteria and fungi community structure associated with bison and elk control and carcasses using the “envfit” function in the “vegan” package (Oksanen et al., 2019).
Indicator species analyses were performed using the multipatt function implemented in the “indicspecies” package version 1.7.6 with 100000 permutations (De Caceres & Jansen, 2016). This step allowed to identify OTUs that led to changes in multivariate patterns between control and carcass of both bison and elk separately (De Cáceres, Legendre, & Moretti, 2010). The multipatt function uses a point biserial correlation coefficient statistical test. Indicator OTUs were defined as bacterial and fungal OTUs with more than 50 sequences, i.e., removing rare taxa and taxa with low abundances containing little indicator information (Rime et al., 2015) and that were significantly correlated with Location (p < 0.05, correlation coefficient > 0.3). A heatmap of these OTUs were generated with the vegan and ggplot2 packages. The indicator analyses were performed in R version 3.3.3 (R Core Team, 2017).

References
Abarenkov, K., Henrik Nilsson, R., Larsson, K.-H., Alexander, I. J., Eberhardt, U., Erland, S., … Kõljalg, U. (2010). The UNITE database for molecular identification of fungi – recent updates and future perspectives. New Phytologist, 186(2), 281–285. doi:10.1111/j.1469-8137.2009.03160.x
Bengtsson-Palme, J., Hartmann, M., Eriksson, K. M., Pal, C., Thorell, K., Larsson, D. G. J., & Nilsson, R. H. (2015). metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data. Molecular Ecology Resources, 15(6), 1403–1414. doi:10.1111/1755-0998.12399
Bengtsson-Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., … Nilsson, R. H. (2013). Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in Ecology and Evolution, 4(10), 914–919. doi:10.1111/2041-210X.12073
Bivand, R., Altman, M., Anselin, L., Assuncao, R., Berke, O., Blanchet, G., … Yu, D. (2019). spdep: Spatial dependence, weighthing schemes, statistics. R package version 1.1-3.
Bump, J. K., Peterson, R. O., & Vucetich, J. A. (2009). Wolves modulate soil nutrient heterogeneity and foliar nitrogen by configuring the distribution of ungulate carcasses. Ecology, 90(11), 3159–3167.
Bump, J. K., Webster, C. R., Vucetich, J. A., Peterson, R. O., Shields, J. M., & Powers, M. D. (2009). Ungulate carcasses perforate ecological filters and create biogeochemical hotspots in forest herbaceous layers allowing trees a competitive advantage. Ecosystems, 12(6), 996–1007. doi:10.1007/s10021-009-9274-0
Danell, K., Berteaux, D., & Brathen, K. A. (2002). Effect of muskox carcasses on nitrogen concentration in tundra vegetation. Arctic, 55(4), 389392.
De Caceres, M., & Jansen, F. (2016). indicspecies: relationship between species and groups of species. R package version 1.7.6.
De Cáceres, M., Legendre, P., & Moretti, M. (2010). Improving indicator species analysis by combining groups of sites. Oikos, 119(10), 1674–1684. doi:10.1111/j.1600-0706.2010.18334.x
Edgar, R. C. (2013). UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10, 996.
Edgar, R. C., & Flyvbjerg, H. (2015). Error filtering, pair assembly and error correction for next-generation sequencing reads. Bioinformatics, 31(21), 3476–3482. doi:10.1093/bioinformatics/btv401
Frey, B., Niklaus, P. A., Kremer, J., Lüscher, P., & Zimmermann, S. (2011). Heavy-machinery traffic impacts methane emissions as well as methanogen abundance and community structure in oxic forest soils. Applied and Environmental Microbiology, 77(17), 6060–6068. doi:10.1128/AEM.05206-11
Frey, B., Rime, T., Phillips, M., Stierli, B., Hajdas, I., Widmer, F., & Hartmann, M. (2016). Microbial diversity in European alpine permafrost and active layers. FEMS Microbial Ecology, 92(3), fiw018.
Frossard, A., Donhauser, J., Mestrot, A., Gygax, S., Bååth, E., & Frey, B. (2018). Long- and short-term effects of mercury pollution on the soil microbiome. Soil Biology and Biochemistry, 120, 191–199. doi:https://doi.org/10.1016/j.soilbio.2018.01.028
Geremia, C., Wallen, R., & White, P. J. (2017). Status report of the Yellowstone bison population, September 2017. Yellowstone National Park, Mammoth, WY, USA: National Park Service, Yellowstone Center for Resources.
Gobet, A., Quince, C., & Ramette, A. (2010). Multivariate cutoff level analysis (MultiCoLA) of large community data sets. Nucleic Acids Research, 38(15), e155–e155. doi:10.1093/nar/gkq545
Latter, P., & Howson, G. (1977). The use of cotton strips to indicate cellulose decomposition in the field. Pedobiologia, (17), 145–155.
Latter, P., & Walton, D. (1988). The cotton strip assay for cellulose decomposition studies in soil: history of the assay and development. In Cotton strip assay: an index for decomposition in soils (pp. 7–9). ITE Symposium, Institute of Terrestrial Ecology, Natural Environment Research Council, UK.
Lenth, R., & Love, J. (2018). lsmeans: least-squares means. R package version 2.27-62.
Martin, M. (2011). Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.Journal, 17(1), 10–12.
Meagher, M. M. (1973). The bison of Yellowstone National Park. NPS Scientific Monograph (Vol. 1). National Park Service, Yellowstone Center for Resources.
Melis, C., Selva, N., Teurlings, I., Skarpe, C., Linnell, J. D. C., & Andersen, R. (2007). Soil and vegetation nutrient response to bison carcasses in Białowieża Primeval Forest, Poland. Ecological Research, 22(5), 807–813. doi:10.1007/s11284-006-0321-4
Nikolenko, S. I., Korobeynikov, A. I., & Alekseyev, M. A. (2013). BayesHammer: Bayesian clustering for error correction in single-cell sequencing. BMC Genomics, 14(1), S7. doi:10.1186/1471-2164-14-S1-S7
Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., … Wagner, H. H. (2019). vegan: community ecology package. R package version 2.5-4.
Pinheiro, J., Bates, D., DebRoy, S., & Sarkar, D. (2018). nlme: Linear and nonlinear mixed effect models. R package version 3.1-131.1.
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., … Glöckner, F. O. (2013). The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research, 41(Database issue), D590–D596. doi:10.1093/nar/gks1219
Quimby, D. C., & Johnson, D. E. (1951). Weights and measurements of Rocky Mountain elk. Journal of Wildlife Management, 15, 57–62.
R Core Team. (2017). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Zurich, Switzerland.
R Core Team. (2019). R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
Rime, T., Hartmann, M., Brunner, I., Widmer, F., Zeyer, J., & Frey, B. (2015). Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield. Molecular Ecology, 24(5), 1091–1108. doi:10.1111/mec.13051
Risch, A. C., Jurgensen, M. F., & Frank, D. A. (2007). Effects of grazing and soil micro-climate on decomposition rates in a spatio-temporally heterogeneous grassland. Plant and Soil, 298(1–2), 191–201. doi:10.1007/s11104-007-9354-x
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., … Weber, C. F. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology, 75(23), 7537–7541. doi:10.1128/AEM.01541-09
Smith, D., Stahler, D., Cassidy, K., Stahler, E., Metz, M., Cassidy, B., … Cato, E. (2018). Yellowstone National Park wolf project annual report 2017. Yellowstone National Park, Mammoth, WY, USA: National Park Service, Yellowstone Center of Resources.
Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73(16), 5261–5267. doi:10.1128/AEM.00062-07
Withington, C., & Sanford Jr., R. (2007). Decomposition rates of buried substances increase with altitude in a forest-alpine tundra ecotone. Soil Biology and Biochemistry, (39), 68–75.

Please cite this paper together with the citation for the datafile.

bacteria

display_name: bacteria

biogeochemical-cycling

display_name: biogeochemical-cycling

carcass

display_name: carcass

carrion

display_name: carrion

decomposition

display_name: decomposition

detritus

display_name: detritus

fungi

display_name: fungi

soil-biodiversity

display_name: soil-biodiversity

wolf

display_name: wolf

yellowstone

display_name: yellowstone

en: Elk and bison carcasses in Yellowstone, USA


data-set-on-snow-instability

title_for_slug: data-set-on-snow-instability

en: snow-avalanche avalanche-forcasting rutschblock propgatoin-saw-test crack-propagation weak-layer slab failure-initiation snow-stability-evaluation slab-tensile-support

en: data set on snow instability

media_type: text/csv

format: CSV

mimetype: text/csv

en: Read-me file on snow instability data

en:
These data on snow instability include three data subsets that were analyzed and the results published by Reuter and Schweizer (2018) who suggest a novel framework on how to describe snow instability by failure initiation, crack propagation and slab tensile support.

Please refer to the Read-me file for further details on the data.

These data are the basis of the following publication:
Reuter, B. and Schweizer, J., 2018. Describing snow instability by failure initiation, crack propagation and slab tensile support. Geophys. Res. Lett., 45, doi: 10.1029/2018GL078069.

avalanche-forcasting

display_name: avalanche-forcasting

crack-propagation

display_name: crack-propagation

failure-initiation

display_name: failure-initiation

propgatoin-saw-test

display_name: propgatoin-saw-test

rutschblock

display_name: rutschblock

slab

display_name: slab

slab-tensile-support

display_name: slab-tensile-support

snow-avalanche

display_name: snow-avalanche

snow-stability-evaluation

display_name: snow-stability-evaluation

weak-layer

display_name: weak-layer

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data set on snow instability


en: meteorology climate-change wind-speed meteo temperature par long-term relative-humidity precipitation swiss-forest-lab

en: Site photo of the forest station (SCB)

media_type: JPEG

en: Site photo of the forest station from below (viewing upwards the slope).

en: Site aerial photo (Schänis)

en: Site aerial photo from both Schänis stations. Source: Google. 2016. Site aerial photo from both Schänis stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Data plot of the forest station (SCB)

media_type: PDF

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Data plot of the field station (SCF)

en: Further details on the data repository

en: Meta data documentation.

en: Field station data (SCF)

en: Data file.

en: Forest station data (SCB)

media_type: CSV

en: Site photo of the field station (SCF)

en: Site photo of the field station from above (viewing downwards the slope).

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Schänis in Switzerland where one station is located within a natural mixed forest stand (SCB) with European beech (_Fagus sylvatica_; 130-150 yrs), European silver fir (_Abies alba_; 130-150 yrs) and European ash (_Fraxinus excelsior_; 130-150 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, SCF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Schänis is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Schänis, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1998 onwards


en: land-use-simulations digital-zoning-plans land-use-transformations land-use-change spatial-planning

media_type: ascii x, y, z

en: Legend simulated maps

en:
Table of Content: 1. General context of the data set "LUSzoning”; 2. Background and aims of the study using the data set LUSzoning; 3. The data set LUSzoning.
1. General context of the data set "LUSzoning".
The data set "LUSzoning" stands for Land-use simulations integrating zoning regulations in Spanish functional urban areas. The data set has been generated as part of the CONCUR research project (https://www.wsl.ch/en/projects/concur.html) led by Dr. Anna M. Hersperger and funded by the Swiss National Science Foundation (ERC TBS Consolidator Grant (ID: BSCGIO 157789) for the period 2016-2021. The CONCUR research project is interdisciplinary and aims to develop a scientific basis for adequately integrating spatial policies (in this case, digital zoning plans) into quantitative land-change modelling approaches at the urban regional level.
2.	Background and aims of the study using the data set “LUSzoning”.
As part of the CONCUR project, a specific task was to integrate planning spatial policies in land-change modelling. Planning can be implemented in modelling using either hard or gradual restrictions. Different studies have addressed the inclusion of spatial planning policies in land-use change modelling. However, the integration of zoning constraints is generally established as hard or Boolean-based restrictions (e.g., whether urban development is allowed or not), while not accounting for the spatial heterogeneity or gradual characteristics within planning zones (e.g., whether planning regulations allow low, medium or high urban density), though these could improve real patterns simulations in urban areas. We assume Spanish General Zoning plans were suitable to explore the integration of planning into land-change modelling as soft constrains because they define land-use intensities in the buildable zoning areas. In light of the above considerations, the overall aim of the study was to model urban land-use changes using a multi-scenario approach that integrates digitized zoning plans for the Functional Urban Areas (FUAs) of Madrid, Barcelona, Valencia, and Zaragoza. The following specific objectives were addressed: i) to analyse the role of planning by defining three future scenarios that integrate digitized zoning plans and one scenario that assumes almost no planning intervention; ii) to introduce zoning constraints that reflect different degrees of urban densities; iii) to generate a transferable spatially-explicit modelling framework to integrate planning into land-use change simulations.
Four future land-use demands scenarios were defined for the FUAs. Storylines were created considering probable development scenarios related to zoning plans, current Spanish legislation and sustainability goals defined along two axes: a high market-oriented vs. high planning-intervention axis, and an axis of short-term economic growth vs. long-term sustainable growth. The sustainable development scenario (S1) is characterized by low gross floor area (GFA) growth that is limited to areas that are currently under development according to zoning plans. The business-as-usual scenario (S2) is characterized by medium GFA growth in the range of on-going trends. The strong development scenario (S3) is characterized by high GFA growth rates. Growth is restricted to buildable areas without urbanization project designated in zoning plans. The unrestricted development scenario (S4) prioritizes a high degree of market liberalization characterized by high GFA growth that surpasses population demands. S4 follows a rapid economic growth pattern with almost no planning intervention.
3.	 The data set “LUSzoning”.
The dataset includes 16 .asc raster layers providing the simulated land-uses under four defined scenarios for Barcelona, Madrid, Valencia and Zaragoza Functional Urban Areas (FUAs) for 2030. The simulated raster layers were created using CLUMondo simulation framework and have a spatial resolution of 30m. The .asc layers name include the name of the FUA and scenario number. For example, the output from simulating the urban growth for the city of Zaragoza under Scenario 2 is named “Zaragoza_S2.tif”. Furthermore, a .txt file named “Legend.txt” includes the numeric value of the land-use and the category of land-use that represents to interpret the .asc raster layers. The name of the land-use classes is a reclassification of the Urban Atlas 2012 land-use classes within the four Spanish FUAs analyzed.

digital-zoning-plans

display_name: digital-zoning-plans

land-use-change

display_name: land-use-change

land-use-simulations

display_name: land-use-simulations

land-use-transformations

display_name: land-use-transformations

spatial-planning

display_name: spatial-planning

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: LUSzoning: Land-use simulations integrating zoning regulations in Spanish functional urban areas


en: biodiversity grassland plants soil-biodiversity soil-biology soil restoration fungi topsoil-removal nematodes bacteria soil-chemistry

en: Soil properties

media_type: XLSX

en:
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)
N.pool	Soil nitrogen pool (June 2017); corrected for bulk density and 12 cm sampling depth [kg ha-1 12cm-1]
Corg.pool	Soil organic carbon pool (June 2017); corrected for bulk density and 12 cm sampling depth [kg ha-1 12cm-1]
pH	soil pH [CaCl2]
BD	Bulk density [g cm-3]
FC	Field capacity [%]
Veg.1	principle coordinate axis 1 (vegetation)
Veg.1	principle coordinate axis 2 (vegetation)
Nem.1	principle coordinate axis 1 (nematoda)
Nem.2	principle coordinate axis 2 (nematoda)
Fun.1	principle coordinate axis 1 (fungi)
Fun.2	principle coordinate axis 2 (fungi)
Prok.1	principle coordinate axis 1 (prokaryota)
Prok.2	principle coordinate axis 2 (prokaryota)
Veg.H	Shannon diversity (vegetation)
Nem.H	Shannon diversity (nematoda)
Fun.H	Shannon diversity (fungi)
Prok.H	Shannon diversity (prokaryota)

en: Fungi data

en:
Sample.data
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)

Taxonomy
OTU.ID	consecutive numbers for operational taxonomic units (OTUe 1-7794)
Taxonomic rank	Domain, Phylum, Class, Order, Family, Genus, Species

Abundance
columns	Plot.ID (see Sample.data)
rows	OTU.ID (see Taxonomy)

en: Nematode data

en:
Sample.data
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)

Taxonomy
ASV.ID	unit number.letter code per amplicon sequence variant (in total 904)
Taxonomic rank	Phylum, Class, Order, Family, Genus, Species

Abundance
columns	Plot.ID (see Sample.data)
rows	ASV.ID (see Taxonomy)

en: Ecosystem coupling_interactions

en:
Treatment	Treatment groups; Y.4-18 = restored grasslands; Initial = intensively managed grasslands; Target = species-rich semi-wet to semi-dry grasslands
Type	Interactions type; A.A = abiotic.abiotic; A.B = abiotic.biotic; B.B = biotic.biotic
Correlation	non-parametric Spearman rank correlations between biotic and abiotic parameters (ecological interactions)

en: Distance to target results

en:
Community	biotic community (vegetation, nematoda, fungi, prokaryota)
Treatment	Treatment groups; Y.4-30= restored grasslands (time since restoration); Initial=intensively managed grasslands (I)
Comparison	within- or between-community Bray-Curtis dissimilarity distance comparison
Label	within-community distances of initial/restored grasslands: treatment abbreviation; between-communities distances of initial/restored-to-target grasslands: treatment abbreviation plus Target (T; species-rich grasslands)
mean	Mean distance to Target (6 plots per treatment group)
sd	Standard deviation of distances to Target (6 plots per treatment group)

en: Networks

en:
Treatment	Treatment groups; Y.4-18 = restored grasslands; Initial = intensively managed grasslands; Target = species-rich semi-wet to semi-dry grasslands
Correlation	non-parametric Spearman rank correlations
Vertex.1+2	Comparison between network components; N.pool = total soil nitrogen pool [kg ha-1 12 cm-1]; Corg.pool = soil organic carbon pool [kg ha-1 12 cm-1], pH = soil pH [CaCl2]; BD = bulk density [g cm-3]; FC = field capacity [%]
	PCoA 1 + 2 biotic communities [Veg = vegetation; Nem = nematoda; Fun = fungi; Prok = prokaryota]
Type	Interactions type; A.A = abiotic.abiotic; A.B = abiotic.biotic; B.B = biotic.biotic

en: Vegetation data

en:
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)
column I-LW	Plant abundance per species (in total 327 plant species) expressed as cover percentage estimation according to van der Maarel (vdM 1979; 7 classes: 1-7); nomenclature according to Lauber & Wagner (1996)

en:
This dataset contains all data, on which the following publication below is based.

Paper Citation:

_Resch, M.C., Schütz, M., Ochoa-Hueso, R., Buchmann, N., Frey, B., Graf, U., van der Putten, W.H., Zimmermann, S., Risch, A.C. (in review). Long-term recovery of above- and belowground interactions in restored grassland after topsoil removal and seed addition. Journal of Applied Ecology_

Please cite this paper together with the citation for the datafile.

Study area and experimental design
The study was conducted in and around two nature reserves, Eigental and Altläufe der Glatt, which were located approximately 5 km apart (47°27´ to 47°29´ N, 8°37´ to 8°32´ E, 417 to 572 m a.s.l., Canton of Zurich, Switzerland; Figure S1 and S2, Table S1). Mean annual temperature and precipitation are 9.8 ± 0.6 °C and 990 ± 168 mm (Kloten climate station 1988-2018; MeteoSchweiz, 2019). TFor this study, we used a space-for-time approach based on eight restoration sites that were between 3 and 32 years old. We measured recovery and restoration success by comparing the restored grasslands with intensively managed and semi-natural grasslands. Using a space-for-time approach requires high similarities in historical properties of the site, such as soil conditions and management regimes, to assure that temporal processes are appropriately represented by spatial patterns (Walker et al., 2010). This was the case in our study. The restored sites had similar soil conditions (i.e., soil type, structure, water availability) as the targeted semi-natural grasslands, while they shared the same agricultural legacy with intensively managed grasslands, i.e., biomass harvest and fertilization (manure and/or slurry) three to five times a year as well as tillage. We randomly established three 5 m x 5 m (25-m2) plots for plant identification and three 2 m x 2 m (4-m2) subplots for soil biotic and abiotic data collection at least 2 m away from the 25-m2 plots in each restoration site. Sites of similar age were grouped into four age classes: Y.4 (3 & 4 years after restoration), Y.18 (17 & 19 years), Y.24 (23 & 25 years), and Y.30 (27 & 32 years). Six intensively managed (Initial) and six semi-natural grassland (Target) sites complemented the experimental set-up, for a total of 36 plots. All plots were sampled under similar conditions, i.e., day of the year, air temperature, soil moisture, and time since last rain event, in June/July 2017 (intensively managed and semi-natural plots) and 2018 (restored plots).

Collection of plants and selected soil biota data
Plant species cover (in %) was visually estimated in each 25-m2 plot in mid-June (Braun-Blanquet, 1964; nomenclature: Lauber & Wagner, 1996). We calculated Shannon diversity and assessed plant community structure. We included soil microbial (fungi, procaryotes) and nematodes in our study as they represent the majority of soil biotic diversity and abundance (Bardgett & van der Putten, 2014), cover various trophic levels of the soil food web (Bongers & Ferris, 1999), and play key roles in soil functioning and ecosystem processes (Bardgett & van der Putten, 2014). In particular, soil nematodes were found to be well suited belowground indicators to evaluate recovery/development after restoration (e.g. Frouz, et al. 2008; Kardol et al., 2009; Resch et al., 2019). We randomly collected ten soil cores (2.2 cm diameter x 12 cm depths; sampler from Giddings Machine Company, Windsor, USA) in the 4-m2 subplots to assess soil nematode and microbial (fungal, prokaryotic) diversities and community structures. For soil nematodes, eight of the soil cores were combined and gently homogenized, placed in coolers and stored at 4 °C and transported to the laboratory (Netherlands Institute of Ecology, NIOO, Wageningen, Netherlands) within three days after collection. Free-living nematodes were extracted from 200 g of fresh soil using Oostenbrink elutriators (Oostenbrink, 1960). After extraction, each sample was divided into three subsamples, two for molecular identification and one to determine nematode abundance (see Resch et al., 2019). For the molecular work, two subsamples were stored in 70% ethanol (final volume 10 mL each) and transported to the laboratory at the Swiss Federal Research Institute WSL (Birmensdorf, Switzerland). Each subsample was reduced to roughly 200 μL by centrifugation and removal of the supernatant. The remaining ethanol was vaporized (65 °C for 3 h). Thereafter, 180 μL ATL buffer solution (Qiagen, Hilden, Germany) was immediately added and samples were stored at 4 °C until further processing. From these samples, nematode metagenomic DNA was extracted using the DNeasy Blood & Tissue Kit (Qiagen, Hilden, Germany) according to the manufacturer`s protocol, except for the incubation step which was run at 56 °C for 4 h. PCR amplification of the V6-V8 region of the eukaryotic small-subunit (18S) was performed with 7.5 μL of genomic DNA template (ca. 1 ng/μL) in 25 μL reactions containing 5 μL PCR reaction buffer, 2.5 mM MgCL2, 0.2 mM dNTPs, 0.8 μM of each primer (NemF: Sapkota & Nicolaisen, 2015; 18Sr2b: Porazinska et al., 2009), 0.5 μL BSA, and 0.25 μL GoTaq G2 Hot Start Polymerase (Promega Corporation, Madison, USA). Amplification was using an initial DNA denaturation step of 95 °C for 2 min, followed by 35 cycles at 94 °C for 40 sec, 58 °C for 40 sec, 72 °C for 1 min, and a final elongation step at 72 °C for 10 min. Filtering, dereplication, sample inference, chimera identification, and merging of paired-end reads was implemented using the DADA2 pipeline (v.1.12; Callahan et al., 2016) to finally assign amplicon sequence variants (ASVs) as taxonomic units.
We combined and homogenized the remaining two soil cores to assess soil microbes, placed them in coolers (4 °C) and transported them to the laboratory at WSL. Metagenomic DNA was extracted from 8 g sieved soil (2 mm) using the DNAeasy PowerMax Soil Kit (Qiagen, Hilden, Germany) according to the manufacturer´s protocol. PCR amplification of the V3-V4 region of the small-subunit (16S) of prokaryotes (i.e., bacteria and archaea) and the ribosomal internal transcribed spacer region (ITS2) of fungi was performed with 1 ng of template DNA using PCR primers and conditions as previously described (Frey et al., 2016). PCRs were run in triplicates, pooled and sent to the Genome Quebec Innovation Centre (Montreal, QC, Canada) for barcoding using the Fluidigm Access Array technology (Fluidigm) and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, USA). Quality filtering, clustering into operational taxonomic units (OTUs, 97% similarity cutoffs) and taxonomic assignment were performed as previously described (Resch et al., 2021).Taxonomic classification of nematode, prokaryotic and fungal sequences was conducted querying against the most recent versions of PR2 (v.4.11.1; Guillou et al., 2013), SILVA (v.132; Quast et al., 2013), and UNITE (v.8; Nilsson et al., 2019) reference sequence databases. Taxonomic assignment cutoffs were set to confidence rankings ≥ 0.8 (below ranked as unclassified). Prokaryotic OTUs assigned to mitochondria or chloroplasts as well as OTUs or ASVs assigned to other than Fungi or Nematoda were manually removed prior to data analysis. The three datasets were filtered to discard singletons and doubletons. Taxonomic abundance matrices were rarefied to the lowest number of sequences per community to achieve parity of the total number of reads between samples (Prokaryotes: 10,929 reads; Fungi: 18,337 reads; Nematodes: 6,662 reads). We calculated Shannon diversity and assessed community structures for soil nematodes, prokaryotes and fungi based on their relative abundances of ASV or OTU at the taxon level.

Collection of soil physical and chemical properties
We randomly collected one undisturbed soil core (5 cm diameter, 12 cm depth) per 4-m2 subplot using a steel cylinder that fit into the soil corer. The cylinders were capped to avoid disturbance during transport and used to measure field capacity, rock content and fine earth density as previously described (Resch et al., 2021). We randomly collected another three soil cores (5 cm diameter, 12 cm depths) in each 4-m2 subplot to determine soil chemical properties. The cores were pooled, dried at 60 °C for 48 h and passed through a 2 mm sieve. We measured soil pH (CaCl2) on dried samples, total nitrogen (N) and organic carbon (C) concentration on dried and fine-ground samples (≤ 0.5 mm; for details see Resch et al., 2021). We calculated total N and organic C pools after correcting its concentration for soil depth, rock content and fine earth density.

bacteria

display_name: bacteria

biodiversity

display_name: biodiversity

fungi

display_name: fungi

grassland

display_name: grassland

nematodes

display_name: nematodes

plants

display_name: plants

restoration

display_name: restoration

soil

display_name: soil

soil-biodiversity

display_name: soil-biodiversity

soil-biology

display_name: soil-biology

soil-chemistry

display_name: soil-chemistry

topsoil-removal

display_name: topsoil-removal

en: Long-term recovery of above-and belowground interactions in restored grasslands


en: cable-yarding wms-data qgis-plugin seilaplan swiss-geodata digital-elevation-model geoinformation-system open-source digital-planning

en: View video on youtube!

en: WMS-Layer als Hintergrundkarten laden

en:
In order to digitally plan a cable line using the QGIS plugin ‘Seilaplan’, maps with various background information are helpful. In this tutorial we show you how to obtain maps that are helpful for cable line planning, for example a national map of Switzerland at different scales, the NFI vegetation height model or the NFI forest mix rate. For this we explain what WMS datasets are and how to integrate them into QGIS. No download of large data is needed for this, only a good internet connection. Please note that the tutorial language is German!

Link for the integration of WMS data: https://wms.geo.admin.ch/

Link to the description on the Swisstopo website:
https://www.geo.admin.ch/en/geo-services/geo-services/portrayal-services-web-mapping/web-map-services-wms.html

Link to the Seilaplan website: https://seilaplan.wsl.ch

**************************

Für die Verwendung des QGIS Plugins Seilaplan zur digitalen Seillinienplanung sind verschiedene Hintergrundkarten hilfreich. In diesem Tutorialvideo zeigen wir, was WMS Daten sind und wie man diese in QGIS einbinden kann. Dafür müssen die Daten nicht heruntergeladen werden. Es braucht lediglich eine gute Internetverbindung. Für die Seillinienplanung hilfreiche Karten sind bspw. die Landeskarte der Schweiz in verschiedenen Massstäben, das Vegetationshöhenmodell LFI oder der Waldmischungsgrad LFI.

Link zur Einbindung der WMS Daten: https://wms.geo.admin.ch/

Link zur Beschreibung auf der Swisstopo Webseite: https://www.geo.admin.ch/de/geo-dienstleistungen/geodienste/darstellungsdienste-webmapping-webgis-anwendungen/web-map-services-wms.html

Link zur Seilaplan-Website: https://seilaplan.wsl.ch

cable-yarding

display_name: cable-yarding

digital-elevation-model

display_name: digital-elevation-model

digital-planning

display_name: digital-planning

geoinformation-system

display_name: geoinformation-system

open-source

display_name: open-source

qgis-plugin

display_name: qgis-plugin

seilaplan

display_name: seilaplan

swiss-geodata

display_name: swiss-geodata

wms-data

display_name: wms-data

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Seilaplan Tutorial: Load WMS layers as background maps


maintainer: Giulia Francesca Azzurra Donati

en: human-dominated-landscapes urban-spatial-planning integrated-modelling biodiversity circuit-theory ecological-corridors

en: Amphibian species specific landscape resistance maps.

media_type: zip-compressed folder of ascii files

en: For each amphibian species we used the weighted average Ensemble model suitability map and converted it to a resistance map using an exponential decay function following (Duflot et al., 2018) using the species-specific mpa threshold previously computed (Preau et al., 2020). The function assigns a resistance value of 1,000 when habitat suitability equals zero, and a value of one when habitat suitability is greater than or equal to the binarization threshold. The exponential shape strengthens the barrier effect of less favorable areas.

en: Amphibian breeding sites of national importance - cantons of Aargau and Zürich

media_type: .asc

en: Amphibian breeding sites of national importance (focal nodes) in the cantons of Aargau and Zürich, 30x30 m resolution, binarised ascii format.

en: Amphibian whole life cycle predictors - 10m resolution

en:
Amphibian whole life cycle predictors include 6 variable types:
(1)	Topographic – slope [°]: derived from the Swiss Topographical Landscape model (swissTLM 3D 2015) at 2 m resolution (elevation uncertainty ± 0.5m) and, subsequently, aggregated to a median value;
(2)	Hydrologic: two predictors including nearest distance to water [m] (all water-related objects and rasterized lotic, lentic and reedbeds from the regional cadastral maps – AV: Daten der Amtliche Vermessung) and runoff coefficient [C] (between 0 and 1 relating amount of runoff to amount of precipitation, mapped AV: Daten der Amtliche Vermessung data against literature values for different land covers);
(3)	Edaphic – soil moisture variability (not available): can gathered from the spatial modelling of Ecological Indicator Values in Switzerland (Descombes et al., 2020) and resampled from 100m to 10m;
(4)	Vegetation: we calculated the median and standard deviation of the Normalized Difference Vegetation Index (NDVI) from all available cloud free Sentinel-2 pixels available between April and October for the years 2016 to 2019 (Drusch et al., 2012) and the median vegetation height [m] (not available) can gathered from Ginzler and Hobi (2015);
(5)	Land-use derived: includes three predictors, grassland density [grassland/cell] (not available) - can be gathered from Pazur et al. (2021), total grasslands area evaluated using a spatial weight matrix and a 250m neighborhood radius around each cell; urbanization [buildings/cell] – average building density for a 250m neighborhood around each cell based on the AV: Daten der Amtliche Vermessung ; and traffic intensity [vehicles/day] – average daily vehicle count (Nationales Personenverkehrsmodells);
(6)	Movement-ecology related: includes three predictors of proximity – nearest forest distance [m]; nearest rock-gravel and sandy area (RGS) distance [m] and nearest road distance [m] (considering any road type) – all calculated based on the AV: Daten der Amtliche Vermessung maps.

en: Amphibian monitoring data

media_type: .csv

en: Processed amphibian occurrence data (2017-2019) in the cantons of Aargau and Zürich. The dataset includes information for the following species: _Alytes obstetricans_,_Bombina variegata_, _Bufo bufo_, _Hyla arborea_, _Ichtyosaura alpestris_, _Lissotriton helveticus_, _Lissotriton vulgaris_, _Rana temporaria_, _Salamandra salamandra_, and _Triturus cristatus_.

en: Binarized "green" and "grey" landcover data (Cantons of Aargau and Zürich)

en: "Green" landcover refers to lawns and vegetated urban surfaces such as, for example private gardens, public parks, cemeteries, green stripes along roadsides, etc. While "grey" landcover refers to impervious grounds such as roads, troittoirs, other impervious. Binarized maps, 30x30m resolution.

en: The data includes (1) amphibian occurrence data (2017-2019) for ten species across the cantons of Aargau and Zürich gathered from the Coordination Center for the Protection of Amphibians and Reptiles of Switzerland (http://www.karch.ch), (2) amphibian whole-life cycle environmental predictors (i.e. topographic, hydrologic, edaphic, vegetation, land-use derived, movement-ecology related), and (3) local urban "green" and "grey" landcover data which can be used to identify opportunities for Blue-Green Infrastructure (through green or grey transitions) in support of regional landscape connectivity.

biodiversity

display_name: biodiversity

circuit-theory

display_name: circuit-theory

ecological-corridors

display_name: ecological-corridors

human-dominated-landscapes

display_name: human-dominated-landscapes

integrated-modelling

display_name: integrated-modelling

urban-spatial-planning

display_name: urban-spatial-planning

en: Amphibian and urban-rural landscape data Swiss Lowlands


ceilometer-klosters

title_for_slug: ceilometer-klosters

en: ceilometer klosters raclets cloud-base-height vertical-visibility

en: Ceilometer data Klosters

media_type: mat

en: Ceilometer installed at Klosters measuring cloud base height, cloud cover and backscatter profile. The time resolution is 30 seconds, with time given in number of days from January 0, 0000, UTC. More information on the variables in the manufacturer manual.

en: Cloud base height (m) and vertical visibility (m) were measured with the VAISALA Ceilometer CL31 in Klosters (LON: 9.880413, LAT: 46.869019). The CL31 is an instrument with constant reliability for all weather conditions and simultaneous detection of three cloud layers in heights up to 7.6 km.

ceilometer

display_name: ceilometer

cloud-base-height

display_name: cloud-base-height

klosters

display_name: klosters

raclets

display_name: raclets

vertical-visibility

display_name: vertical-visibility

education

en: Education and science

en: Ceilometer Klosters


en: tls terrestrial-laser-scans polar sea-ice-elevation sea-ice

en: Link to post-processed TLS’s of Antarctic sea ice

en: Data processing documentation

media_type: DOC

en: Post Processed TLS's

media_type: ZIP

en: Compressed dat files

en:
This dataset comprises of a post-processed set of terrestrial laser scans (TLS’s) of Antarctic sea ice obtained during the Sea Ice Physics and Ecosystem Experiment-2 (SIPEX-2, http://seaice.acecrc.org.au/sipex2012/) in September-November 2012. The post-processing steps include the registration of the individual scans into a single 3-dimensional point cloud, the removal of unwanted noise caused by particles in the air (i.e., snow crystals), and the final generation of surface grids based on the cleaned individual point returns. The final product includes the ‘xyz’ coordinates of the individual point measurements, and gridded surfaces covering study areas of 100m x 100 m, and at resolutions of 0.01 m, 0.1 m, 0.25 m, 0.5 m and 1 m for each of the survey dates. Additionally, subgrid statistics that include the mean elevation, standard deviation, minimum and maximum elevations, range, and number of point returns in each gridcell are generated. The final product is provided in space-delimited text files, with the surface grids provided in Digital Terrain Model (DTM) format ready for visualization in any GIS software.

How to cite:
Please also cite the original publication when using this data set.: Trujillo, E., K. Leonard, T. Maksym, and M. Lehning (2016), Changes in snow distribution and surface topography following a snowstorm on Antarctic sea ice, J. Geophys. Res. Earth Surf., 121, doi:[10.1002/2016JF003893](https://dx.doi.org/10.1002/2016JF003893).

polar

display_name: polar

sea-ice

display_name: sea-ice

sea-ice-elevation

display_name: sea-ice-elevation

terrestrial-laser-scans

display_name: terrestrial-laser-scans

tls

display_name: tls

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: High resolution sea ice surface topography from the SIPEX-2 expedition, East Antarctica, 2012


en: terrestrial-laser-scans gridded-data terrestiral-laserscanning antarctica depth-of-snowfall

en: Scan from 11 January 2019, 10 cm resolution

en: Scan from 27 December 2018, 1 mm resolution

en: Scan from 4 January 2019, 10 cm resolution

en: Scan from 11 January 2019, 1 mm resolution

en: Scan from 4 January 2019, 1 mm resolution

en: Scan from 27 December 2018, 10 cm resolution

en: Scan from 21 December 2018, 10 cm resolution

en: Scan from 21 December 2018, 1 mm resolution

en: Scan from 2 January 2019, 1 mm resolution

en: Scan from 2 January 2019, 10 cm resolution

en:
Surface topography maps (spatial extent: 400 m x 400 m) obtained at approximately 300 m from the top of the Hammarryggen Ice Rise in Dronning Maud Land, East Antarctica, using a Riegl VZ-6000 Terrestrial Laser Scanner (TLS). Scans were obtained on 5 days in the 2018-2019 Austral summer: on December 21 and 27, and January 2, 4 and 11. By using reflectors installed on bamboo poles, scans were registered with respect to the reflectors, such that the difference between two successive scans reveals the spatial patterns of erosion and deposition of snow. On each scan day, we used multiple scan positions to create one combined point cloud. After applying an octree filter on the point cloud, a 3D surface was obtained. For each day, the dataset contains a 1 mm and a 10 cm octree filter resolution file, only including points in a 400 m x 400 m area centered around the scan positions.

Notes:

* All files in the dataset are in the same coordinate system. However, this coordinate system is arbitrary (i.e., not related to any global coordinate system).

* From the installed reflectors, 4 reflectors could be used over the full period. The scan accuracy is generally higher within the area enclosed by the reflectors.

* The scans from January 2 were found to have exhibited small tilt during the scan and are of lesser accuracy.

* By walking along fixed corridors, disturbance of the snow was limited.

antarctica

display_name: antarctica

depth-of-snowfall

display_name: depth-of-snowfall

gridded-data

display_name: gridded-data

terrestiral-laserscanning

display_name: terrestiral-laserscanning

en: Terrestrial laser scans on Hammarryggen Ice Rise, Dronning Maud Land, East Antarctica


maintainer: Matthias Haeni

en: par relative-humidity swiss-forest-lab precipitation wind-speed meteo temperature meteorology climate-change long-term

en: Forest station data (NAB)

en: Data file.

en: Site photo of the forest station (NAB)

media_type: image/jpeg

en: Site photo of the forest station from the side.

mimetype: image/jpeg

en: Data plot of the forest station (NAB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Field station data (NAF)

en: Site photo of the field station (NAF)

en: Site photo of the field station form the side.

en: Site aerial photo (Nationalpark)

en: Site aerial photo from both Nationalpark stations. Source: Google. 2016. Site aerial photo from both Nationalpark stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Data plot of the field station (NAF)

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Nationalpark in Switzerland where one station is located within a natural coniferous forest stand (NAB) with mountain pine (_Pinus mugo_; 210 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, NAF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Nationalpark is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

education

en: Education and science

en: Nationalpark, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


maintainer: Michael Lehning

en: Data Source

media_type: R

en: Coordinates of Grid Points

en: Hourly Gridded Wind Power Time Series

en: Description

en: Full Data Description

en:
This dataset consist of simulated hourly power production from an Enercon E82 Turbine at 100 m hub-height. It describes the hourly power output a 1MW turbine would produce in each 0.01° grid cell for the years 2016 and 2017.

100 m wind speed data was taken from the COSMO-1 model (Consortium for Small-scale Modeling 2017), which has a 0.01° horizontal resolution. The domain covered is the whole of Switzerland, with the exclusion of lakes. As such, the number of 0.01◦ pixels within Switzerland amounts to 48657.
Conversion to power output was done based on the power curve of the Enercon E82 Turbine. As power output is lower at altitude due to lower air density, we corrected for this effect as described in (Kruyt et al. 2017).

Please cite the following paper in connection with the dataset:

Paper Citation:
 > _Bert Kruyt, Jérôme Dujardin, and Michael Lehning: Improvement of wind power assessment in complex terrain: The case of COSMO-1 in the Swiss Alps, Front. Energy Res., [doi:10.3389/fenrg.2018.00102] (https://doi.org/10.3389/fenrg.2018.00102)_

mountain-wind-potential

display_name: mountain-wind-potential

topography

display_name: topography

wind-energy

display_name: wind-energy

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Dataset on Cosmo-1 based Energy Potential in Swiss Alps


en: antarctica blowing-snow eddy-covariance-measurements micro-rain-radar meteorological-data large-eddy-simulations mass-flux drifting-snow turbulence

en: Readme

media_type: TXT

en: Meta data

en: Measurement data from micro-meteorological station

media_type: zip-compressed folder of ASCII files

en: Automatic in-situ measurements of micro-meteorology and snow transport

en: Measurement data from snow particle counter at MRR site

media_type: zip-compressed folder of csv

en: Near-surface observations of drifting snow from a Snow Particle Counter (SPC) installed at the location of the Micro Rain Radar.

en: Simulation data for a situation with significant snow transport

en: Data from two LES-LSM simulations called Drift_1 and Drift_2, which reproduce the conditions observed at the S17 site on 11th January 2019, 00:40 to 00:50 UTC.

en: Measurement data from Micro Rain Radar (MRR)

media_type: NetCDF

en: Remote sensing data of blowing snow from a Micro Rain Radar (MRR).

en: Simulation data for a situation with negligible snow transport

en: Results from two LES-LSM simulations called NoDrift_1 and NoDrift_2, which reproduce the conditions observed at the S17 site on 12th January 2019, 05:40 to 05:50 UTC.

media_type: zip-compressed folder of text files (f90)

en: Source code of the large-eddy simulations coupled with a Lagrangian stochastic model (LES-LSM), available on GitLab.

en:
This dataset contains measurement and simulation data. The measurements characterize the standard meteorology, turbulence, and snow transport at the S17 site near Syowa Station in East Antarctica during an expedition in austral summer 2018/2019. Large-eddy simulations with sublimating particles provide additional insight into the latent and sensible heat exchange between snow and air in two example situations observed at the S17 site.

A part of the measurement data was recorded by an automatic measurement station from 10th January 2019 to 26th January 2019. This measurement station was equipped with standard meteorological sensors, a three-dimensional ultrasonic anemometer, an open-path infrared gas analyzer, a snow particle counter, an infrared radiometer for measurements of the surface temperature, and a sonic ranging sensor measuring changes in snow surface elevation.

At a horizontal distance of approximately 500 m, a Micro Rain Radar (MRR) was installed in a tilted configuration with an elevation angle of 7° for remote sensing of blowing snow between 25th December 2018 and 24th January 2019. In addition, near-surface in-situ measurements of snow transport were performed at the location of the MRR by deploying a snow particle counter from 27th December 2018 to 24th January 2019.

The simulations cover a 18 x 18 x 6 m³ domain and reproduce the steady-state conditions during a 10-min interval with significant snow transport and another 10-min interval with negligible snow transport. We provide the model source code and the post-processed simulation data, i.e., horizontally averaged quantities as a function of height and time.

antarctica

display_name: antarctica

blowing-snow

display_name: blowing-snow

drifting-snow

display_name: drifting-snow

eddy-covariance-measurements

display_name: eddy-covariance-measurements

large-eddy-simulations

display_name: large-eddy-simulations

mass-flux

display_name: mass-flux

meteorological-data

display_name: meteorological-data

micro-rain-radar

display_name: micro-rain-radar

turbulence

display_name: turbulence

en: Meteorology and snow transport at S17 near Syowa, Antarctica, in austral summer 2018/2019


maintainer: Elisabeth Hafner

en: snow avalanche hazard-mapping natural-hazard satellite

en: SPOT6 Avalanche Outlines 16 January 2019

media_type: SHP

en: Shapefile of the manually mapped avalanche outlines. Please only use this data together with the example key document provided with this dataset and within the limitations of the dataset described in the publications.

format: SHP

en:
Outlines of 6'041 avalanches mapped from SPOT6 satellite data over the Swiss Alps on 16 January 2019. The dataset was acquired following a period with very high avalanche danger. The outlines have different attributes described in the data example key (ExampleKey_AvalMapping16012019.pdf)

The generation of the data is described in:

Bühler, Y., E. D. Hafner, B. Zweifel, M. Zesiger, and H. Heisig (2019), Where are the avalanches? Rapid SPOT6 satellite data acquisition to map an extreme avalanche period over the Swiss Alps, The Cryosphere, 13(12), 3225-3238, doi:10.5194/tc-13-3225-2019.

The data was comprehensivly validated in a subset area in

Hafner, E.D.; Techel, F.; Leinss, S.; Bühler, Y., 2021: Mapping avalanches with satellites - evaluation of performance and completeness. Cryosphere, 15, 2: 983-1004. doi: 10.5194/tc-15-983-2021

avalanche

display_name: avalanche

hazard-mapping

display_name: hazard-mapping

natural-hazard

display_name: natural-hazard

satellite

display_name: satellite

snow

display_name: snow

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: SPOT6 Avalanche outlines 16 January 2019


en: occupancy-models wetlands landscape amphibians conservation

en: Model code, description

media_type: HTML

en: This is the output of the R markdown file that provides JAGS model code and describes how to format the provided data and fit the dynamic occupancy models described in the associated publication, for a quick overview.

format: HTML

en: Original raw data

en: This file contains the original raw monitoring data as provided by the canton of Aargau. Access is restricted and only considered upon request and in consultation with the canton of Aargau.

en: Readme

media_type: PDF

en: Description of methods and datasets.

en: Model code

media_type: Rmd

en: This R markdown file contains all code and descriptions necessary to load and format the provided data and to fit the dynamic occupancy models described in the associated publication, including JAGS code for the fitted models.

en: Observation data

media_type: CSV

en: This file contains detection/non-detection data for the 12 amphibian species between 1999 and 2019 for 3 annual visits. Detectable denotes whether or not a visit j was made to pond i in year t. ObservedID gives a unique ID for the observer collecting the data during visit j to pond i in year t.

en: Covariate data 2

en: This file contains covariate data that changes over time for 856 ponds in 21 years (long format): whether or not a pond exists in year _t_, the age of constructed ponds in year _t_, structural connectivity of the pond in year _t_.

en: Covariate data 1

en: This file contains covariate data that does not change over time for 856 ponds: the region the pond is in, whether the pond is old or new (constructed since 1991), elevation, water surface area, fluctuations of the water table (yes, no), the percent forest cover in 100m radius around the pond, the area or large (>6m wide) roads in 1km radius around the pond.

en:
In the canton of Aargau, hundreds of new ponds have been constructed since the 1990s to benefit declining amphibian populations. This dataset consists of monitoring data for all 12 pond-breeding amphibian species in the canton of Aargau from 1999 to 2019 in 856 ponds, and environmental variables that describe the ponds and the landscape surrounding the ponds. Species observation data is detection/non-detection data from repeat visits during survey years, during which all potentially suitable ponds in an area were surveyed. Environmental variables describing the ponds are whether the pond has been newly constructed since 1991 or not, pond age (if constructed), elevation a.s.l., the water surface area, and whether the water table fluctuates or not. Environmental variables describing the surroundings of the ponds are the percent area of forest within a circular buffer of radius 100m around the pond, the area of large (width ≥6m) roads within a circular buffer of radius 1km around the pond, and structural connectivity.

The canton of Aargau is the owner of the monitoring data; the original datafile is only disclosed upon request and in consultation with the canton of Aargau.

The edited dataset contains cleaned observation data for the 12 amphibian species, as well as compiled and edited covariate data and code to fit dynamic occupancy models.

amphibians

display_name: amphibians

conservation

display_name: conservation

landscape

display_name: landscape

occupancy-models

display_name: occupancy-models

wetlands

display_name: wetlands

en: Amphibian observation and pond data (Aargau, Switzerland)


en: gbif occurrence-records taxonomy landsca conservation large-scale species-observations ecoregions hard-limit r-package filtering species-distribution range-maps accepted-name flags synonyms

en: gbif.range R package version 0.2 (current)

en: wsl.gbif R package version 0.1 (deprecated)

en: Test version, not to be used.

en: GitHub URL

en: Although species range may be obtained using expert maps or modeling methods, expert data is often species-limited and statistical models need more technical expertise as well as many species observations. When unavailable, such information may be extracted from the Global Biodiversity Information facility (GBIF), the largest public data repository inventorying georeferenced species observations worldwide. However, retrieving GBIF records at large scale may be tedious if users are unaware of specific tools and functions that need to be employed. Here we present *gbif.range*, a R library that contains automated methods to generate species range maps from scratch using in-house ecoregions shapefiles and an easy-to-use GBIF download wrapper. Finally, this library also offers a set of additional very useful parameters and functions for large GBIF datasets (generate doi, extract GBIF taxonomy, records filtering...). [gbif.range R project](https://github.com/8Ginette8/gbif.range)

accepted-name

display_name: accepted-name

ecoregions

display_name: ecoregions

filtering

display_name: filtering

flags

display_name: flags

gbif

display_name: gbif

hard-limit

display_name: hard-limit

landsca

display_name: landsca

large-scale

display_name: large-scale

occurrence-records

display_name: occurrence-records

r-package

display_name: r-package

range-maps

display_name: range-maps

species-distribution

display_name: species-distribution

species-observations

display_name: species-observations

synonyms

display_name: synonyms

taxonomy

display_name: taxonomy

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: gbif.range - An R package to generate species range maps based on ecoregions and a user-friendly GBIF wrapper


en: ecological-indicator-values soil grain-size phylogenetic-diversity climate functional-diversity taxonomic-diversity

en: Data access

en:
This dataset comprises a large array of ecological data for the European Alps:

  (1) Current soil and climate predictors at various resolutions.
  (2) GBIF observations of the European Alps Flora (~4,000 species).
  (3) Species habitat suitability maps (1,109 species; based on species observations filtered at 40x40-km)
  at various resolutions used in the study to generate (4); except 'expert'...
  (4) Expert, Taxonomic, phylogenetic and functional diversity of the study region at various resolutions
  (from 100-m to 40-km --> 100-m aggregated & mean to km + non-aggregated/predicted) for CLIM,
  SOIL and CLIM-SOIL models.
  (5) Ecological and altitudinal preferences of the European Alps Flora.
  (6) Data outputs of the related published article.
  (7) All scripts used for analyses.
  (8) Additional files used for analyses.
  (9) Improved set of species habitat suitability maps (~2,600 species; based on species observations
  filtered at 1x1-km) and related taxonomic diversity at 100-m resolution (aggregated to km +
  non-aggregated/predicted) for CLIM, SOIL and CLIM-SOIL models ---> not incorporated in the study.

climate

display_name: climate

ecological-indicator-values

display_name: ecological-indicator-values

functional-diversity

display_name: functional-diversity

grain-size

display_name: grain-size

phylogenetic-diversity

display_name: phylogenetic-diversity

soil

display_name: soil

taxonomic-diversity

display_name: taxonomic-diversity

en: Resolution in species distribution models shapes spatial patterns of plant multifaceted diversity


weather-station-davos-wolfgang

maintainer: Jörg Wieder

title_for_slug: weather-station-davos-wolfgang

en: pressure temperature relative-humidity weather raclets

en: Weather Station Davos Wolfgang

media_type: text/csv

en: The data file contains date and time (YYYY-MM-DD hh:mm:ss) in UTC, temperature (°C), relative humidity (%), pressure (hPa) at 10 m above ground and above sea level. The data was averaged over 10 minutes.

en: The dataset contains weather parameters measured at Davos Wolfgang (LON: 9.853594, LAT: 46.835577).

pressure

display_name: pressure

raclets

display_name: raclets

relative-humidity

display_name: relative-humidity

temperature

display_name: temperature

weather

display_name: weather


maintainer: Thomas Fricker

de: baueingabe bewilligungsverfahren

de: json

media_type: application/json

de: Baugesuche und Baubewilligungen nach Gebäudeart, Gemeinde und Jahr (seit 1991) (json)

format: JSON

mimetype: application/json

license: CC BY 3.0 CH

de: csv

de: Baugesuche und Baubewilligungen nach Gebäudeart, Gemeinde und Jahr (seit 1991) (csv)

de: Bewilligte Gesuche, einschliesslich Nachtragsbewilligungen. Achtung: Die Daten können sich rückwirkend ändern! Die Gemeinde Liesberg wird aufgesplittet nach den beiden Ortschaften Liesberg und Liesberg Dorf ausgewiesen.

baueingabe

display_name: baueingabe

bewilligungsverfahren

display_name: bewilligungsverfahren

construction

fr: Construction, logement

de: Bau- und Wohnungswesen

en: Construction and housing

it: Costruzione e abitazione

kanton-basel-landschaft

fr: Canton de Bâle-Campagne

de: Kanton Basel-Landschaft

en: Canton of Basel-Country

it: Cantone di Basilea-Campagna

en:
The Canton of Basel-Country publishes open datasets of cantonal offices and agencies.
Further information at https://ogd.bl.ch/

de:
Der Kanton Basel-Landschaft veröffentlicht nach und nach Open Government Datensätze von kantonalen Ämtern und Dienststellen.
Weitere Informationen unter https://ogd.bl.ch/

political_level: canton

value: BL - DCAT