en: biodiversity plants soil-chemistry soil soil-biology restoration grassland topsoil-removal bacteria fungi soil-biodiversity nematodes

en: Vegetation data

en:
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)
column I-LW	Plant abundance per species (in total 327 plant species) expressed as cover percentage estimation according to van der Maarel (vdM 1979; 7 classes: 1-7); nomenclature according to Lauber & Wagner (1996)

en: Networks

en:
Treatment	Treatment groups; Y.4-18 = restored grasslands; Initial = intensively managed grasslands; Target = species-rich semi-wet to semi-dry grasslands
Correlation	non-parametric Spearman rank correlations
Vertex.1+2	Comparison between network components; N.pool = total soil nitrogen pool [kg ha-1 12 cm-1]; Corg.pool = soil organic carbon pool [kg ha-1 12 cm-1], pH = soil pH [CaCl2]; BD = bulk density [g cm-3]; FC = field capacity [%]
	PCoA 1 + 2 biotic communities [Veg = vegetation; Nem = nematoda; Fun = fungi; Prok = prokaryota]
Type	Interactions type; A.A = abiotic.abiotic; A.B = abiotic.biotic; B.B = biotic.biotic

en: Nematode data

en:
Sample.data
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)

Taxonomy
ASV.ID	unit number.letter code per amplicon sequence variant (in total 904)
Taxonomic rank	Phylum, Class, Order, Family, Genus, Species

Abundance
columns	Plot.ID (see Sample.data)
rows	ASV.ID (see Taxonomy)

en: Distance to target results

en:
Community	biotic community (vegetation, nematoda, fungi, prokaryota)
Treatment	Treatment groups; Y.4-30= restored grasslands (time since restoration); Initial=intensively managed grasslands (I)
Comparison	within- or between-community Bray-Curtis dissimilarity distance comparison
Label	within-community distances of initial/restored grasslands: treatment abbreviation; between-communities distances of initial/restored-to-target grasslands: treatment abbreviation plus Target (T; species-rich grasslands)
mean	Mean distance to Target (6 plots per treatment group)
sd	Standard deviation of distances to Target (6 plots per treatment group)

en: Soil properties

en:
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)
N.pool	Soil nitrogen pool (June 2017); corrected for bulk density and 12 cm sampling depth [kg ha-1 12cm-1]
Corg.pool	Soil organic carbon pool (June 2017); corrected for bulk density and 12 cm sampling depth [kg ha-1 12cm-1]
pH	soil pH [CaCl2]
BD	Bulk density [g cm-3]
FC	Field capacity [%]
Veg.1	principle coordinate axis 1 (vegetation)
Veg.1	principle coordinate axis 2 (vegetation)
Nem.1	principle coordinate axis 1 (nematoda)
Nem.2	principle coordinate axis 2 (nematoda)
Fun.1	principle coordinate axis 1 (fungi)
Fun.2	principle coordinate axis 2 (fungi)
Prok.1	principle coordinate axis 1 (prokaryota)
Prok.2	principle coordinate axis 2 (prokaryota)
Veg.H	Shannon diversity (vegetation)
Nem.H	Shannon diversity (nematoda)
Fun.H	Shannon diversity (fungi)
Prok.H	Shannon diversity (prokaryota)

en: Ecosystem coupling_interactions

en:
Treatment	Treatment groups; Y.4-18 = restored grasslands; Initial = intensively managed grasslands; Target = species-rich semi-wet to semi-dry grasslands
Type	Interactions type; A.A = abiotic.abiotic; A.B = abiotic.biotic; B.B = biotic.biotic
Correlation	non-parametric Spearman rank correlations between biotic and abiotic parameters (ecological interactions)

en: Fungi data

en:
Sample.data
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)

Taxonomy
OTU.ID	consecutive numbers for operational taxonomic units (OTUe 1-7794)
Taxonomic rank	Domain, Phylum, Class, Order, Family, Genus, Species

Abundance
columns	Plot.ID (see Sample.data)
rows	OTU.ID (see Taxonomy)

en:
This dataset contains all data, on which the following publication below is based.

Paper Citation:

_Resch, M.C., Schütz, M., Ochoa-Hueso, R., Buchmann, N., Frey, B., Graf, U., van der Putten, W.H., Zimmermann, S., Risch, A.C. (in review). Long-term recovery of above- and belowground interactions in restored grassland after topsoil removal and seed addition. Journal of Applied Ecology_

Please cite this paper together with the citation for the datafile.

Study area and experimental design
The study was conducted in and around two nature reserves, Eigental and Altläufe der Glatt, which were located approximately 5 km apart (47°27´ to 47°29´ N, 8°37´ to 8°32´ E, 417 to 572 m a.s.l., Canton of Zurich, Switzerland; Figure S1 and S2, Table S1). Mean annual temperature and precipitation are 9.8 ± 0.6 °C and 990 ± 168 mm (Kloten climate station 1988-2018; MeteoSchweiz, 2019). TFor this study, we used a space-for-time approach based on eight restoration sites that were between 3 and 32 years old. We measured recovery and restoration success by comparing the restored grasslands with intensively managed and semi-natural grasslands. Using a space-for-time approach requires high similarities in historical properties of the site, such as soil conditions and management regimes, to assure that temporal processes are appropriately represented by spatial patterns (Walker et al., 2010). This was the case in our study. The restored sites had similar soil conditions (i.e., soil type, structure, water availability) as the targeted semi-natural grasslands, while they shared the same agricultural legacy with intensively managed grasslands, i.e., biomass harvest and fertilization (manure and/or slurry) three to five times a year as well as tillage. We randomly established three 5 m x 5 m (25-m2) plots for plant identification and three 2 m x 2 m (4-m2) subplots for soil biotic and abiotic data collection at least 2 m away from the 25-m2 plots in each restoration site. Sites of similar age were grouped into four age classes: Y.4 (3 & 4 years after restoration), Y.18 (17 & 19 years), Y.24 (23 & 25 years), and Y.30 (27 & 32 years). Six intensively managed (Initial) and six semi-natural grassland (Target) sites complemented the experimental set-up, for a total of 36 plots. All plots were sampled under similar conditions, i.e., day of the year, air temperature, soil moisture, and time since last rain event, in June/July 2017 (intensively managed and semi-natural plots) and 2018 (restored plots).

Collection of plants and selected soil biota data
Plant species cover (in %) was visually estimated in each 25-m2 plot in mid-June (Braun-Blanquet, 1964; nomenclature: Lauber & Wagner, 1996). We calculated Shannon diversity and assessed plant community structure. We included soil microbial (fungi, procaryotes) and nematodes in our study as they represent the majority of soil biotic diversity and abundance (Bardgett & van der Putten, 2014), cover various trophic levels of the soil food web (Bongers & Ferris, 1999), and play key roles in soil functioning and ecosystem processes (Bardgett & van der Putten, 2014). In particular, soil nematodes were found to be well suited belowground indicators to evaluate recovery/development after restoration (e.g. Frouz, et al. 2008; Kardol et al., 2009; Resch et al., 2019). We randomly collected ten soil cores (2.2 cm diameter x 12 cm depths; sampler from Giddings Machine Company, Windsor, USA) in the 4-m2 subplots to assess soil nematode and microbial (fungal, prokaryotic) diversities and community structures. For soil nematodes, eight of the soil cores were combined and gently homogenized, placed in coolers and stored at 4 °C and transported to the laboratory (Netherlands Institute of Ecology, NIOO, Wageningen, Netherlands) within three days after collection. Free-living nematodes were extracted from 200 g of fresh soil using Oostenbrink elutriators (Oostenbrink, 1960). After extraction, each sample was divided into three subsamples, two for molecular identification and one to determine nematode abundance (see Resch et al., 2019). For the molecular work, two subsamples were stored in 70% ethanol (final volume 10 mL each) and transported to the laboratory at the Swiss Federal Research Institute WSL (Birmensdorf, Switzerland). Each subsample was reduced to roughly 200 μL by centrifugation and removal of the supernatant. The remaining ethanol was vaporized (65 °C for 3 h). Thereafter, 180 μL ATL buffer solution (Qiagen, Hilden, Germany) was immediately added and samples were stored at 4 °C until further processing. From these samples, nematode metagenomic DNA was extracted using the DNeasy Blood & Tissue Kit (Qiagen, Hilden, Germany) according to the manufacturer`s protocol, except for the incubation step which was run at 56 °C for 4 h. PCR amplification of the V6-V8 region of the eukaryotic small-subunit (18S) was performed with 7.5 μL of genomic DNA template (ca. 1 ng/μL) in 25 μL reactions containing 5 μL PCR reaction buffer, 2.5 mM MgCL2, 0.2 mM dNTPs, 0.8 μM of each primer (NemF: Sapkota & Nicolaisen, 2015; 18Sr2b: Porazinska et al., 2009), 0.5 μL BSA, and 0.25 μL GoTaq G2 Hot Start Polymerase (Promega Corporation, Madison, USA). Amplification was using an initial DNA denaturation step of 95 °C for 2 min, followed by 35 cycles at 94 °C for 40 sec, 58 °C for 40 sec, 72 °C for 1 min, and a final elongation step at 72 °C for 10 min. Filtering, dereplication, sample inference, chimera identification, and merging of paired-end reads was implemented using the DADA2 pipeline (v.1.12; Callahan et al., 2016) to finally assign amplicon sequence variants (ASVs) as taxonomic units.
We combined and homogenized the remaining two soil cores to assess soil microbes, placed them in coolers (4 °C) and transported them to the laboratory at WSL. Metagenomic DNA was extracted from 8 g sieved soil (2 mm) using the DNAeasy PowerMax Soil Kit (Qiagen, Hilden, Germany) according to the manufacturer´s protocol. PCR amplification of the V3-V4 region of the small-subunit (16S) of prokaryotes (i.e., bacteria and archaea) and the ribosomal internal transcribed spacer region (ITS2) of fungi was performed with 1 ng of template DNA using PCR primers and conditions as previously described (Frey et al., 2016). PCRs were run in triplicates, pooled and sent to the Genome Quebec Innovation Centre (Montreal, QC, Canada) for barcoding using the Fluidigm Access Array technology (Fluidigm) and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, USA). Quality filtering, clustering into operational taxonomic units (OTUs, 97% similarity cutoffs) and taxonomic assignment were performed as previously described (Resch et al., 2021).Taxonomic classification of nematode, prokaryotic and fungal sequences was conducted querying against the most recent versions of PR2 (v.4.11.1; Guillou et al., 2013), SILVA (v.132; Quast et al., 2013), and UNITE (v.8; Nilsson et al., 2019) reference sequence databases. Taxonomic assignment cutoffs were set to confidence rankings ≥ 0.8 (below ranked as unclassified). Prokaryotic OTUs assigned to mitochondria or chloroplasts as well as OTUs or ASVs assigned to other than Fungi or Nematoda were manually removed prior to data analysis. The three datasets were filtered to discard singletons and doubletons. Taxonomic abundance matrices were rarefied to the lowest number of sequences per community to achieve parity of the total number of reads between samples (Prokaryotes: 10,929 reads; Fungi: 18,337 reads; Nematodes: 6,662 reads). We calculated Shannon diversity and assessed community structures for soil nematodes, prokaryotes and fungi based on their relative abundances of ASV or OTU at the taxon level.

Collection of soil physical and chemical properties
We randomly collected one undisturbed soil core (5 cm diameter, 12 cm depth) per 4-m2 subplot using a steel cylinder that fit into the soil corer. The cylinders were capped to avoid disturbance during transport and used to measure field capacity, rock content and fine earth density as previously described (Resch et al., 2021). We randomly collected another three soil cores (5 cm diameter, 12 cm depths) in each 4-m2 subplot to determine soil chemical properties. The cores were pooled, dried at 60 °C for 48 h and passed through a 2 mm sieve. We measured soil pH (CaCl2) on dried samples, total nitrogen (N) and organic carbon (C) concentration on dried and fine-ground samples (≤ 0.5 mm; for details see Resch et al., 2021). We calculated total N and organic C pools after correcting its concentration for soil depth, rock content and fine earth density.

bacteria

display_name: bacteria

biodiversity

display_name: biodiversity

fungi

display_name: fungi

grassland

display_name: grassland

nematodes

display_name: nematodes

plants

display_name: plants

restoration

display_name: restoration

soil

display_name: soil

soil-biodiversity

display_name: soil-biodiversity

soil-biology

display_name: soil-biology

soil-chemistry

display_name: soil-chemistry

topsoil-removal

display_name: topsoil-removal

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Long-term recovery of above-and belowground interactions in restored grasslands


bryophytes-of-europe-traits-bet-dataset

title_for_slug: bryophytes-of-europe-traits-bet-dataset

en: mosses iucn liverworts indicator-values bioclimatic-variables red-list hornworts life-history-traits

state: active

type: dataset

media_type: TXT

en: Text file including the BET dataset.

format: TXT

media_type: XLSX

en: Excel file including the BET dataset and (trait) explanations.

format: XLS

media_type: PDF

en: PDF including the (trait) explanations.

format: PDF

en: The Bryophytes of Europe Traits (BET) dataset includes values for 65 biological and ecological traits and 25 bioclimatic variables for all 1816 bryophytes included in the European Red List (Hodgetts et al. 2019). The traits are compiled from several regional trait datasets and manually complemented using Floras, species-specific literature and expert knowledge. The bioclimatic variables are calculated using the European range of each species. Details regarding the trait compilation and extraction of bioclimatic variables can be found in the corresponding data paper (Van Zuijlen et al. 2023).

bioclimatic-variables

display_name: bioclimatic-variables

hornworts

display_name: hornworts

indicator-values

display_name: indicator-values

iucn

display_name: iucn

life-history-traits

display_name: life-history-traits

liverworts

display_name: liverworts

mosses

display_name: mosses

red-list

display_name: red-list

education

fr: Education, science

de: Bildung, Wissenschaft

it: Formazione e scienza

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester


en: antarctica cryowrf python aws consistent

media_type: .zip

en: Scripts to preprocess (and download for some databases) atmospheric weather station data. Furthermore, a list of stations and a map can be created to have an overview.

format: SERVICE

en:
There are many sources providing atmospheric weather station data for the Antarctic continent. However, variable naming, timestamps and data types are highly variable between the different sources. The published python code intends to make processing of different AWS sources from Antarctica easier. For all datasets that are taken into account variables are renamed in a consistent way. Data from different sources can then be handled in one consistent python dictionary.

The following data sources are taken into account:

* AAD: Australian Antarctic Division (https://data.aad.gov.au/aws)
* ACECRC: Antarctic Climate and Ecosystems Cooperative Research Centre by the Australian Antarctic Division
* AMRC: Antarctic Meteorological Research Center (ftp://amrc.ssec.wisc.edu/pub/aws/q1h/)
* BAS: British Antarctic Survey (ftp://ftp.bas.ac.uk/src/ANTARCTIC_METEOROLOGICAL_DATA/AWS/; https://legacy.bas.ac.uk/met/READER/ANTARCTIC_METEOROLOGICAL_DATA/)
* CLIMANTARTIDE: Antarctic Meteo-Climatological Observatory by the italian National Programme of Antarctic Research (https://www.climantartide.it/dataaccess/index.php?lang=en)
* IMAU: Institute for Marine and Atmospheric research Utrecht (Lazzara et al., 2012), https://www.projects.science.uu.nl/iceclimate/aws/antarctica.ph
* JMA: Japan Meteorological Agency (https://www.data.jma.go.jp/antarctic/datareport/index-e.html)
* NOAA: National Oceanic and Atmospheric Administration (https://gml.noaa.gov/aftp/data/meteorology/in-situ/spo/)
* Other/AWS_PE: Princess Elisabeth (PE), KU Leuven, Prof. N. van Lipzig, personal communication
* Other/DDU_transect: Stations D-17 and D-47 (in transect between Dumont d’Urville and Dome C, Amory, 2020)
* PANGAEA: World Data Center (e.g. König-Langlo, 2012)

Important notes

* Information about data sources is available. Some downloading scripts are included in the provided code. However, users should make sure to comply with the data providers terms and conditions.
* Given changing download options of the differnent institutions the above links may not permanently work and data has to be retrieved by the user of this dataset.
* No quality control is applied in the provided preprocessing software - quality control is up to the user of the datasets. Some dataset are quality controlled by the owner.

Acknowledgements
--------------------------
We thank all the data providers for making the data publicly available or providing them upon request. Full acknowledgements can be found in Gerber et al., submitted.

References
---------------
Amory, C. (2020). “Drifting-snow statistics from multiple-year autonomous measurements in Adélie Land, East
Antarctica”. The Cryosphere, 1713–1725. doi: 10.5194/tc-14-1713-2020

Gerber, F., Sharma, V. and Lehning, M.: CRYOWRF - a validation and the effect of blowing snow on the Antarctic SMB, JGR - Atmospheres, submitted.

König-Langlo, G. (2012). “Continuous meteorological observations at Neumayer station (2011-01)”. Alfred Wegener
Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, doi: 10.1594/PANGAEA.
775173

antarctica

display_name: antarctica

aws

display_name: aws

consistent

display_name: consistent

cryowrf

display_name: cryowrf

python

display_name: python

en: Preprocessing Antarctic Weather Station (AWS) data in python


maintainer: EnviDat Support

en: roads geospatial gis density jupyter buffer

en: Plots

media_type: application/zip

en: Random plot locations

format: ZIP

mimetype: application/zip

media_type: ipynb

en: Road Density Calculation (Python Notebook) online

media_type: url

en: Road data from OSM for the surroundings of Menzberg, Switzerland

en:
This dataset contains the road and plot data used for the geospatial analysis example showcased in "Fostering Open Science at WSL with the EnviDat Environmental Data Portal", a contribution to the 5th Open Source Geospatial Research and Education Symposium (OGRS), 2018.
The example uses Jupyter Notebook to calculate road densities in the neighbourhood of sample plot locations with Python. Road data were extracted from OpenStreetMap, while the point data (sample plots) were generated manually.

buffer

display_name: buffer

density

display_name: density

geospatial

display_name: geospatial

gis

display_name: gis

jupyter

display_name: jupyter

roads

display_name: roads

en: Dataset for OGRS 2018 publication


en: species-distribution-model species-occurrence fagales pinales species-richness species-range-map

en: Occurrence maps for species of Fagales and Pinales with few records

media_type: ZIP

en: Point_buffer.zip includes 267 occurrence maps of species that do not have enough occurrence data for polygon mapping.

en: Species range maps of species in Fagales and Pinales (with enough occurrences)

en: species_map.zip includes species 1690 range maps generated based on the integrated method described in Lyu et al., (2022). File names with (polygon) indicate that this map is only generated by polygon mapping, as there are not enough occurrences for SDMs.

en:
This database contains 1957 distribution maps of species from Fagales and Pinales constructed based on a method integrating polygon mapping and SDMs (Lyu et al., 2022).
To construct the maps, we first collected occurrence data from 48 different sources. According to the number of occurrences after data cleaning, three kinds of maps are constructed: (1) For species with more than 20 occurrences, we performed SDM and polygon mapping described in Lyu et al. (2022) and select the integration of the two layers as the distribution range; (2) For species with more than 4 but less than 20 occurrences, we only use polygon mapping to draw the distribution range; (3) For species with less than 4 occurrences, a 20-km buffer was generated around the occurrences as the distribution range. The maps were manually checked and evaluated (see Note S3 and Table S9 in Lyu et al., 2022 for details).

fagales

display_name: fagales

pinales

display_name: pinales

species-distribution-model

display_name: species-distribution-model

species-occurrence

display_name: species-occurrence

species-range-map

display_name: species-range-map

species-richness

display_name: species-richness

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Species distribution maps of Fagales and Pinales (GDPlants)


maintainer: Matthias Haeni

en: long-term swiss-forest-lab meteo par meteorology relative-humidity climate-change precipitation temperature wind-speed

en: Site aerial photo (Alpthal)

media_type: image/jpeg

en: Site aerial photo from the Alpthal forest station. Source: Google. 2016. Site aerial photo from the Alpthal forest station. Retrieved November 11, 2016, from https://www.google.ch/maps

mimetype: image/jpeg

en: Data plot of the forest station (ALB)

media_type: application/pdf

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

mimetype: application/pdf

en: Forest station data (ALB)

media_type: text/csv

format: CSV

mimetype: text/csv

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for one meteorological station in Alpthal in Switzerland which is located within a natural coniferous forest (ALB) with Norway spruce (_Picea abies_; 180-230 yrs) as dominant tree species. The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Alpthal is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Alpthal, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


maintainer: Benjamin Reuter

en: snow-instability avalanche-problem-type avalanche-activity snow weissfluhjoch snow-cover-modeling crocus avalanche-danger snowpack avalanche

en: 2015-2016 Avalanche problem types from SNOWPACK

media_type: .csv

en:
Avalanche problem types were derived from a snow cover simulation with the model SNOWAPCK for the winter season 2015-2016 at the Weissfluhjoch study plot, Davos, CH.
The data cover the period 01.01.2016-30.04.2016. The binary indicator (0,1) tells whether an avalanche problem type was identified in the snow cover simulation (1) or not (0).
The data are presented in Figure 7 in Reuter et al. (2021).

en: 2015-2016 Avalanche problem types from Crocus

en:
Avalanche problem types were derived from a snow cover simulation with the model Crocus for the winter season 2015-2016 at the Weissfluhjoch study plot, Davos, CH.
The data cover the period 01.01.2016-30.04.2016. The binary indicator (0,1) tells whether an avalanche problem type was identified in the snow cover simulation (1) or not (0).
The data are presented in Figure 7 in Reuter et al. (2021).

en: 2015-2016 Seismic avalanche acitivity catalogue

en:
Avalanches were indentified in seismic data recorded by two seismic arrays, one deployed at Wannengrat (2,500 m) and another one deployed in the Dischma valley (2,000 m).
The data cover the period from 01.01.2016 - 30.04.2016 and are presented in Figure 7 in Reuter et al. (2021).

en: 1999-2017 Avalanche problem types from Crocus

en:
Avalanche problem types were derived from snow cover simulations with the model Crocus at the Weissfluhjoch study plot, Davos, CH.
The data cover the winter seasons between 1999-2017 and include the simulated annual frequencies of new snow, wind slab, persistent weak layer, aging-persistent weak layer and wet snow problem types.
The data are presented in Figure 8 in Reuter et al. (2021).

en: 1999-2017 Avalanche problem types from SNOWPACK

en:
Avalanche problem types were derived from snow cover simulations with the model SNOWPACK at the Weissfluhjoch study plot, Davos, CH.
The data cover the winter seasons between 1999-2017 and include the simulated annual frequencies of new snow, wind slab, persistent weak layer, aging-persistent weak layer and wet snow problem types.
The data are shown in Figure 8 in Reuter et al. (2021).

en:
Avalanche problem types were derived from snow cover simulations with the models Crocus and SNOWPACK at the Weissfluhjoch study plot, Davos, CH. The data include annual frequencies of avalanche problem types for the seasons 1999-2017 and daily presence of avalanche problem types for the period 01.01.2016 - 30.04.2016.
Avalanche activity was derived from two seismic sensor arrays deployed no further than 15 km from Weissfluhjoch, Davos, CH. The data cover the period 01.01.2016 - 30.04.2016.

avalanche

display_name: avalanche

avalanche-activity

display_name: avalanche-activity

avalanche-danger

display_name: avalanche-danger

avalanche-problem-type

display_name: avalanche-problem-type

crocus

display_name: crocus

snow

display_name: snow

snow-cover-modeling

display_name: snow-cover-modeling

snow-instability

display_name: snow-instability

snowpack

display_name: snowpack

weissfluhjoch

display_name: weissfluhjoch

en: Simulated avalanche problem types and seismic avalanche activity around Weissfluhjoch


en: ecosystem-services circuit-theory urban-planning network-analysis biodiversity ecological-corridors

en: Amphibian movement resistance layers and scripts for connectivity modelling - part 2

media_type: zip-compressed folder of r scripts and data files

en: The zipped folder includes the script to create and analyse the networks from Circuitscape outputs. The subfolders “Boundaries”, “Layers”, and “Reference_net” contain files either called by the code or created in the process. The subfolder “Outputs_from_Circuitscape” contains the outputs from Circuitscape including node and branch cumulative currents in a network format.

en: Amphibian movement resistance layers and scripts for connectivity modeling - part 1

en: The zipped folder includes the script to aggregate the resistance layers into squared and hexagonal grids. The subfolders “Boundaries”, “Layers”, “Reference_grids”, and “Resistance_from_SDMs” contain files either called by the code or created in the process.The subfolder “Inputs_for_Circuitscape” contains the inputs to run Circuitscape, after doing some subsequent processing steps in QGIS (listed in the R script) with the files created with the script.

en: This data includes (1) Scripts to aggregate landscape resistance layers into squared and hexagonal grids (i.e., different representations and resolutions), (2) Input resistance layers and focal nodes in .txt format to run in Circuitscape (Python implementation v4.0.5). Circuitscape is a software tool for modeling and analyzing landscape connectivity, which simulates movement of organisms across landscapes by estimating resistance to movement across each point of the landscape. (3) Scripts for the ecological network analysis, and (4) environmental predictors for amphibian whole-life cycle habitats used to describe the local environment for BGI design (i.e. topographic, hydrologic, edaphic, vegetation, land-use derived, movement-ecology related).

biodiversity

display_name: biodiversity

circuit-theory

display_name: circuit-theory

ecological-corridors

display_name: ecological-corridors

ecosystem-services

display_name: ecosystem-services

network-analysis

display_name: network-analysis

urban-planning

display_name: urban-planning

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Multi-Scale Prioritization framework for Urban Blue-Green Infrastructure Planning to Support Biodiversity: Data & Codes


en: nfi-photos perception-of-ecosystem-services online-questionnaire-survey adults-and-teenagers visual-attractiveness

en: SPSS-Dataset

en: Dataset in csv-format

en: Questionnaire French

media_type: .pdf

en: Questionnaire German

en: Codebook to SPSS-file

en: Questionnaire Italian

en: This questionnaire survey was conducted as an online survey and aimed at investigating the relationship between physical forest characteristics, visual attractiveness of forest and the perception of ecological and cultural ecosystem services in urban forests. Each participant was shown 6 photos out of a pool of 50 photos taken from the Swiss National Forest Inventory (NFI) database. Physical forest characteristics were derived from the photos. The study was conducted as part of the "WaMos meets LFI" (WML) project.

adults-and-teenagers

display_name: adults-and-teenagers

nfi-photos

display_name: nfi-photos

online-questionnaire-survey

display_name: online-questionnaire-survey

perception-of-ecosystem-services

display_name: perception-of-ecosystem-services

visual-attractiveness

display_name: visual-attractiveness

en: Relationship between physical forest characteristics, visual attractiveness and perception of ecosystem services in urban forests


maintainer: Marcia Phillips

en: meteo-station permos borehole ritigraben permafrost

en: DATA ACCESS

media_type: SMET

en: Meterological station at the [Ritigraben permafrost borehole](http://www.envidat.ch/dataset/rit1) (RIT_0102) in canton Valais, Switzerland. The station is located at 2690 m asl on a flat site.

borehole

display_name: borehole

meteo-station

display_name: meteo-station

permafrost

display_name: permafrost

permos

display_name: permos

ritigraben

display_name: ritigraben

en: RIT2: Meteorological station at Ritigraben borehole site


maintainer: Frank Hagedorn

en: soil-temperature nutrient-fluxes forest-topsoil nitrogen seasons phosphorus zero-tension-lysimeters beech fertilization dissolved-organic-phosphorus

en:
Data on dissolved organic and inorganic phosphorus and nitrogen concentrations in leachates and their corresponding
fluxes from the litter layer, the Oe/Oa horizon, and the A horizon of two German beech forest sites.
Leachate samples were taken in April 2018, July 2018, October 2018, Feb./Mar. 2019, and July 2019
with zero-tension lysimeters after artificial irrigation. Soil samples were taken in July 2019.
For more details please refer to the publication.

beech

display_name: beech

dissolved-organic-phosphorus

display_name: dissolved-organic-phosphorus

fertilization

display_name: fertilization

forest-topsoil

display_name: forest-topsoil

nitrogen

display_name: nitrogen

nutrient-fluxes

display_name: nutrient-fluxes

phosphorus

display_name: phosphorus

seasons

display_name: seasons

soil-temperature

display_name: soil-temperature

zero-tension-lysimeters

display_name: zero-tension-lysimeters

education

en: Education and science

en: Phosphorus and nitrogen leaching from beech forest soils


global-cryosphere-watch-data-survey

maintainer: Mathias Bavay

title_for_slug: global-cryosphere-watch-data-survey

en: gcw data-portal automatic-publication data-exchange data-usage

en: Data interoperability survey

en: Third party data usage

en: Two surveys on the topic of data usage where conducted for the Global Cryosphere Watch data portal. The first one focused on the data provider point of view while the second one focused on the data user point of view. 37 data providers (ie institutions) worldwide provided their answers for the first survey (from fall 2017 until summer 2018) while 54 users (contacted through various mailing list such as the Cryolist) answered the questions on their third party data usage (fall 2019 until January 2020).

automatic-publication

display_name: automatic-publication

data-exchange

display_name: data-exchange

data-portal

display_name: data-portal

data-usage

display_name: data-usage

gcw

display_name: gcw

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Global Cryosphere Watch data survey


maintainer: Anita C. Risch

en: soil-chemistry global mineralization worldwide grassland soil soil-biology nutrient-network

en:
site.code: Site code

Continent: Continent

sampleID: Sample ID

nn.latitude: Lattitude

nn.longitude: Longitude

bioclim.T.ann: Mean annual temperature (°C)

bioclim.T.var: Temperature variability (°C)

bioclim.T.q.wet: Temperature of the wettest quarter (°C)

bioclim.T.q.dry: Temperature of the driest quarter (°C)

bioclim.T.q.warm: Temperature of the warmest quarter (°C)

bioclim.P.ann: Mean annual preciptiation (mm)

bioclim.P.q.wet: Precipitation of the wettest quarter (mm)

ch.pH: pH

ch.WSK.vol: Water holding capacity (vol%)

ch.bulkdensity.gcm3: Bulk density (g cm-3)

ch.porespace: Pore space (vol%)

ch.sand.perc: Soil texture: sand (%)

ch.silt.perc: Soil texture: silt (%)

ch.clay.perc: Soil texture: clay (%)

ch.NO3start.mgg: NO3 at the beginning of the incubation (mgkg)

ch.Ntot.perc: Total soil N (%)

ch.Ctot.perc: Total soil C (%)

ch.Corg.perc: Soil organic C (%)

ch.netNminfield.mgkgd: Realised soil net N mineralisation (mg kg-1 d-1)

ch.netNminlab.mgkgd: Potential soil ne N mineralisation (mg kg-1 d-1)

archaea.cpg.log: Ammonia oxidising archaea (archaeal amoA gene copies g-1 soil)

bacteria.cpg.log: Ammonia oxidising bacteria (bacterial amoA gene copies g-1 soil)

micr.biom: Microbial biomass (ug g-1 soil)

ch.CtoN: C to N ratio

ch.netNnitriffield.mgkgd.sqrt: Realised soil net nitrification, transformed (mg kg-1 d-1)

ch.netNammoniffield.mgkgd.sqrt: Realised soil net ammonification, transformed (mg kg-1 d-1)

ch.netNnitriflab.mgkgd.sqrt: Potential soil net nitrification, transformed (mg kg-1 d-1)

ch.netNammoniflab.mgkgd.sqrt: Potential soil net ammonifiation, transformed (mg kg-1 d-1)

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch, A. C.; Zimmermann, S.; Ochoa-Hueso, R.; Schütz, M.; Frey, B.; Firn, J. L.; Fay, P. A.; Hagedorn, F.; Borer, E. T.; Seabloom, E. W.; et al. Soil net nitrogen mineralisation across global grasslands. Nat. Commun. 2019, 10 (1), 4981 (10 pp.). doi.org/10.1038/s41467-019-12948-2

Please cite this paper together with the citation for the datafile.

We conducted coordinated measurements of realised and potential soil net Nmin, and assessed water holding capacity, bulk density, C and N content, texture, pH, pore space, microbial biomass, and archaeal (AOA) and bacterial (AOB) ammonia oxidiser abundance using identical materials and methods across 30 grasslands on six continents. The sites covered a globally relevant range of climatic and edaphic conditions. Climate data was obtained from worldclim - Global climate data https://www.worldclim.org/

global

display_name: global

grassland

display_name: grassland

mineralization

display_name: mineralization

nutrient-network

display_name: nutrient-network

soil

display_name: soil

soil-biology

display_name: soil-biology

soil-chemistry

display_name: soil-chemistry

worldwide

display_name: worldwide


en: snow-density antarctica snow-density-profile snowmicropen microstructure

en: List of SnowMicroPen measurements

media_type: .txt

en: List of all SnowMicroPen measurements, including date and location, and processing status. This list has been generated by the python code (see other resources in this dataset).

en: SnowMicroPen pts files and processed txt files

en: Zip archive containing the acquired *.pts files (binary files recorded by the SnowMicroPen), and the converted *.txt files using the SMP.ipynb jupyter notebook (see the python code in the other resources in this dataset)

en: Documentation SnowMicroPen measurements

en: This *.zip archive contains all available documentation of the SnowMicroPen measurements, including the mapping of the SMP measurements in the terrestrial laser scan field at PEA (see documentation for 20161220) and at the Hammarryggen Ice Rise (see documentation for 20190104 and 20190111).

en: Manual snow pits and other snow density measurements

en: Jupyter notebook for processing the SnowMicroPen files.

en: Python code exported from the Jupyter notebook for processing the SnowMicroPen files

media_type: py

en: SnowMicroPen (SMP) measurements and manual snowpits from Dronning Maud Land, East Antarctica. Measurements were taken in the vicinity of the Belgium Princess Elisabeth Station (PEA), in a transect towards the coast, and on the Lokeryggen and Hammarryggen Ice Rises near the coast. Measurements were taken during 3 individual campaigns in the 2016-2017, 2018-2019 and 2019-2020 field seasons.

antarctica

display_name: antarctica

microstructure

display_name: microstructure

snow-density

display_name: snow-density

snow-density-profile

display_name: snow-density-profile

snowmicropen

display_name: snowmicropen

en: SnowMicroPen measurements and manual snowpits from Dronning Maud Land, East Antarctica


maintainer: Athanasios Nenes

en: sigma-w hygroscopicity supersaturation raclets cloud-modeling cloud-droplets ccn dmt-ccn-chamber weissfluhjoch

en: Hygroscopicity parameter Weissfluhjoch

en:
The aerosol hygroscopicity parameter is derived combining the CCN and SMPS size distribution data collected between February 24 and March 8 2019 at Weissfluhjoch. The data file contains:

* Date and time (DD/MM/YYYY hh:mm:ss) in UTC
* The instrument supersaturation (SS%)
* The calculated hygroscopicity parameter (kappa)
* The calculated critical dry diameter of the particles (Dcr) in nm.

Missing values are indicated by "-999".

en: Predicted cloud droplet number concentrations Weissfluhjoch

en:
In-situ measurements of aerosol size distributions along with updraft velocities collected from a wind Doppler Lidar are coupled with a state-of-the art droplet activation parameterization (Morales and Nenes, 2014) to determine the cloud droplet number and maximum in-cloud supersaturation that can potentially form over the Weissfluhjoch station between February 24 and March 8 2019. For this, a hygroscopicity parameter of 0.25 is assumed, according to the CCN-derived values. The data file contains:

* Date and time (DD/MM/YYYY hh:mm:ss) in UTC
* The wind-lidar derived standard deviation of updraft velocities (sigma-w) in m/s, used to apply the parameterization employing a single characteristic velocity (Morales and Nenes, 2010)
* The maximum predicted cloud parcel supersaturation (Smax%)
* The total in-situ aerosol number concentration (Naer) in cmˉ³, measured by the SMPS
* The predicted cloud droplet numbers (Nd) in cmˉ³
* The activation fraction (%)

en: CCN data Weissfluhjoch

en:
In-situ CCN measurements were conducted between February 24 and March 8 2019 at Weissfluhjoch. The data file contains:

* Date and time (DD/MM/YYYY hh:mm:ss) in UTC
* Filtered CCN number concentrations (in cmˉ³) measured at 6 discrete supersaturations (SS) ranging from 0.09% to 0.74%. The name of each CCN column is indicative of the SS developed within the instrument.
* Instrument characteristics such as sample temperature (in °C) and pressure (in mbar)
* A code that refers to the reason of filtering.

Missing or filtered CCN values are indicated by "-999", while a declaration of each "Error_code" can be found in the following list:

_Error_code_:

0000: Measurements without error

1000: Period of transient operation after a supersaturation change

2000: Sharp change (decrease) in the room temperature housing the instrument, which induces a reset in column temperature

3000: Irregular values in the room temperature housing the instrument

9999: Missing data

en:
Cloud Condensation Nuclei (CCN) data: A Droplet Measurement Technologies (DMT) single-column continuous-flow streamwise thermal gradient chamber (CFSTGC; Roberts and Nenes, 2005) was deployed at the measurement site Weissfluhjoch (2700 m a.s.l., LON: 9.806475, LAT: 46.832964) to record the in-situ CCN number concentrations between February 24 and March 8 2019 for different supersaturations (SS). To account for the difference between the ambient (~735 mbar) and the calibration pressure (~800 mbar), the SS reported by the instrument is adjusted by a factor of 0.92. The CFSTGC was cycled between 6 discrete SS values ranging from 0.09% to 0.74%, producing a full CCN spectrum every hour. The raw CCN measurements are filtered to discount periods of transient operation and whenever the room temperature housing the instrument changed sufficiently to induce a reset in column temperature. Additional information can be found in Section 2.1.2 [here](https://acp.copernicus.org/preprints/acp-2020-1036/).

Hygroscopicity data: The CCN number concentration measurements were directly related to the size distribution and total aerosol concentration data measured by the Scanning Mobility Particle Size Spectrometer (SMPS) instrument at the same station (https://www.envidat.ch/dataset/aerosol-data-weissfluhjoch) to infer the particles hygroscopicity parameter (kappa). For each SMPS scan, the particles critical dry diameter (Dcr) is estimated by integrating backward the SMPS size distribution, until the aerosol number matches the CCN concentration observed for the same time period as the SMPS scan. Assuming the particle chemical composition is internally mixed, the kappa is determined from Dcr and SS, applying Köhler theory. Additional information can be found in Section 2.2 [here](https://acp.copernicus.org/preprints/acp-2020-1036/).

Predicted cloud droplet numbers: Droplet calculations are carried out with the physically based aerosol activation parameterization of Morales and Nenes (2014), employing the “characteristic velocity” approach of Morales and Nenes (2010). Aerosol size distribution observations required to predict the cloud droplet numbers and maximum in-cloud supersaturation are obtained from the SMPS instrument deployed at Weissfluhjoch. The required vertical velocity measurements are derived from the wind Doppler Lidar (https://www.envidat.ch/dataset/lidar-wind-profiler-data) deployed at Davos Wolfgang and are extracted for the altitude of interest, being 1100 m above ground level for Weissfluhjoch. Additional information can be found in Section 2.3 [here](https://acp.copernicus.org/preprints/acp-2020-1036/).

ccn

display_name: ccn

cloud-droplets

display_name: cloud-droplets

cloud-modeling

display_name: cloud-modeling

dmt-ccn-chamber

display_name: dmt-ccn-chamber

hygroscopicity

display_name: hygroscopicity

raclets

display_name: raclets

sigma-w

display_name: sigma-w

supersaturation

display_name: supersaturation

weissfluhjoch

display_name: weissfluhjoch

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: CCN, hygroscopicity, predicted cloud droplet numbers Weissfluhjoch


tree-ring-laser-ablation-data

title_for_slug: tree-ring-laser-ablation-data

en: dendrochronology laser-ablation dendrochemistry air-pollution tree-rings

en: Laser ablation data

en:
This dataset contains the values of several chemical elements (Mg, Al, Si, S, K, Ca, Ti, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Sr, Tl, Pb, Bi) measured in the latewood of tree rings of Mongolian oak from Harbin, China, at a 5-year resolution. Due to the lack of a suitable reference material for wood, absolute concentration was not calculated, and the ratio between the chemical element and 13C was taken as proxy for the element signal.

In Harbin, one of the largest cities and most important industrial centers in northeastern China, air quality monitoring systems were built only by the end of 2015 to meet the national requirements. Thus, dendrochemical analyses could be used as a tool to complement for the lack of air quality data over longer periods of time, allowing for the reconstruction of the temporal trend of trace metals. Our main scopes were to: (a) assess the chemical composition of Quercus mongolica Fisch. ex Ledeb. tree rings from Harbin using a recently developed system of laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS), (b) identify the main chemical elements which
derived from air pollution and may be used as indicators over the period 1965–2020 in Harbin, while excluding those that were controlled by physiological processes in the tree, and (c) reconstruct the history of pollution in Harbin by comparing the tree-ring chemical composition of recent decades with that of previous decades, in trees growing in the highly polluted city of Harbin and in trees growing in a control site 90 km away from major pollution sources.

Briefly, the temporal trend of some elements was influenced by physiological factors, by environmental factors such as pollution, or influenced by both. Mg, K, Zn, Cu, Ni, Pb, As, Sr and Tl showed changes in pollution levels over time.

air-pollution

display_name: air-pollution

dendrochemistry

display_name: dendrochemistry

dendrochronology

display_name: dendrochronology

laser-ablation

display_name: laser-ablation

tree-rings

display_name: tree-rings

en: Tree-ring laser ablation data


maintainer: Axel Volkwein

en: impact-testing field-tests mass-movements field-data rockfall-experiments experiments field-test natural-hazard experiment rockfall

en: Video analysis

en: The zip contains five Excel-files that in turn contain the results of the performed video analyses. The sheet "Daten" contains the pixels of different positions on the blocks that were tracked by the software "Kinovea". The sheet "Auswertung" determines the block kinetics based on the pixel data over time.

en: Raw data (high speed videos, acceleration measurements, laboratory tests)

en:
This file contains

* the high speed videos showing the concrete blocks impacting the gallery roof.
* the raw data of the acceleration measurements
* the data of Tiefbauamt Graubünden containg the tension tests of gallery reinforcment, ME-testing the cushion layer and the tests on concrete samples.

en: Acceleration measurements

en: The zip file contains five excel files, one for each test conducted. The first sheet contains the raw data and a data set that went through a low-pass filter. The sheet "Allgemein" contains calibration factors for the sensors and time details of a test. The sheets "DiaDaten" and "DiaDatenGefiltert" show the measurements over time. The block and slab kinetics are determined in the sheets "ZeitintegrationBlock" and "ZeitintegrationPlatte". The sheet "VergleichBeschleunigungen" shows the influence of the low-pass-filter and a running average filter on the block accelerations.

en: Five full-scale field tests were conducted with concrete blocks weighting between 800 and 3200 kg being dropped onto the roof of a gallery structure made from reinforced concrete. The impacts were recorded using high-speed video and acceleration measurements at the falling blocks. The dataset contains the raw data as well as the analyses of the block trajectories, i.e. kinetics and dynamics. Setup of the measurements and the analyses conducted are published in Volkwein, A. "Durchführung und Auswertung von Steinschlagversuchen auf eine Stahlbetongalerie", WSL-Berichte, Heft 68, 2018.

experiment

display_name: experiment

experiments

display_name: experiments

field-data

display_name: field-data

field-test

display_name: field-test

field-tests

display_name: field-tests

impact-testing

display_name: impact-testing

mass-movements

display_name: mass-movements

natural-hazard

display_name: natural-hazard

rockfall

display_name: rockfall

rockfall-experiments

display_name: rockfall-experiments

en: Rockfall gallery testing Parde 2016


en: snow-water-equivalent meteodat-gmbh gcos wagital snow

media_type: TXT

en:
Total water reserves of the snow cover [mio m3] for Wägital catchment, Switzerland, for reference date April 1. Data is separated in 2 elevation zones 900m-1500m asl and 1500m-2300m asl. Time period 1943-2023, status 2023-04-17.

Funded currently or in the past by:

- Federal Office of Meteorology and Climatology MeteoSwiss in the context of GCOS Switzerland
- Meteodat GmbH
- Institute of Geography, University of Zurich
- WSL Institute for Snow and Avalanche Research SLF
- Institute of Geography, ETH Zurich (IAC ETH Zurich)
- AG Kraftwerk Wägital (AXPO and EWZ)

See also https://www.meteodat.ch/waegital.html

gcos

display_name: gcos

meteodat-gmbh

display_name: meteodat-gmbh

snow

display_name: snow

snow-water-equivalent

display_name: snow-water-equivalent

wagital

display_name: wagital

education

en: Education and science

en: Snow water equivalent for reference date April 1 for Wägital catchment, starting 1943


mountain-permafrost-hydrology

maintainer: Jeannette Noetzli

title_for_slug: mountain-permafrost-hydrology

en: permafrost-degradation ice-rich-permafrost mass-movements monitoring-techniques climate-change-impacts mountain-permafrost-hydrology

en: Synthesis report chapter of the Hydro-CH2018 project of the Federal Office for the Environment (FOEN)

en: DORA Persistent URL

en: This report was prepared as one of the synthesis report chapters of the Hydro-CH2018 project of the Federal Office for the Environment (FOEN). In earlier reports such as the CH2014-IMPACTS report (CH-Impacts 2014), the topic of mountain permafrost hydrology was not addressed. Here, we provide a baseline of the available knowledge of mountain permafrost in the Swiss Alps for future reference. We compile an overview of the current understanding of mountain permafrost in the Swiss Alps, its distribution and characteristics, observed and projected changes, and expected impacts on slope stability, infrastructure and hydrological aspects. We also briefly describe the measurement techniques and modelling approaches applied. The chapter closes with a summary of the most important open research questions. The literature cited mainly includes studies on mountain permafrost published in scientific journals and assessments of long-term observation data. We focus on permafrost hydrology interactions wherever information is available. However, systematic studies on permafrost hydrology in mountain areas are still limited.

climate-change-impacts

display_name: climate-change-impacts

ice-rich-permafrost

display_name: ice-rich-permafrost

monitoring-techniques

display_name: monitoring-techniques

mountain-permafrost-hydrology

display_name: mountain-permafrost-hydrology

permafrost-degradation

display_name: permafrost-degradation

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Mountain Permafrost Hydrology


maintainer: Ionut Iosifescu Enescu

en: open-source jupyter-notebooks open-science reproducibility open-data hpc research-data-management

en: Open Science Support @ WSL (Poster)

en:
This poster was originally created for the swissuniversities Open Science Action Plan: Kick-Off Forum, and showed to the audience on 17.10.2019. It illustrates how the environmental data portal EnviDat provides the tools for fostering Open Science and Reproducibility of scientific research at WSL.

Supporting open science is a highly relevant user requirement for EnviDat and for implementing FAIR (Findability, Accessibility, Interoperability and Reusability) principles at dataset level.
EnviDat encourages WSL scientists to complement data publication with a complete description of research methods and the inclusion of the open source software, code or scripts used for processing the dataset or for obtaining the published results. By openly publishing open software (e.g. as Jupyter notebooks) alongside research data sets, researchers can contribute to mitigate reproducibility issues.

EnviDat also promotes and supports, where possible and practical, the publication of software as Jupyter notebooks. Jupyter notebooks provide a solution for improved documentation and interactive execution of open code in a wide range of programming languages (Python, R, Octave/Matlab, Java or Scala). These programming languages are widely used in environmental research at WSL and well supported by the Jupyter-compatible kernels. We have sucessfully interfaced EnviDat-hosted notebooks with the WSL High-Performance Computing (HPC) Linux Cluster through a JupyterHub/JuypterLab beta installation on the HPC cluster implemented in close collaboration with the WSL IT-Services.
For existing software that cannot be easily migrated to Jupyter Notebooks, the Open Science and Reproducibility is assisted by containerisation. We have proven that several Singularity containers can successfully run on WSL's HPC cluster.

Finally, the researchers can upload the data/results complemented by code (e.g. as Jupyter Notebooks, or Singularity containers) and any additional documentation in EnviDat. Consequently, they will receive a DOI for the entire dataset, which they can reference in their science paper in order to publish a more reproducible research.

_License_: This poster is released by WSL and the EnviDat team to the public domain under a Creative Commons 4.0 CC0 "No Rights Reserved" international license. You can reuse this poster in any way you want, for any purposes and without restrictions.

hpc

display_name: hpc

jupyter-notebooks

display_name: jupyter-notebooks

open-data

display_name: open-data

open-science

display_name: open-science

open-source

display_name: open-source

reproducibility

display_name: reproducibility

research-data-management

display_name: research-data-management

en: Open Science Support at the Swiss Federal Research Institute WSL. The EnviDat Concept


en: irfnnhsr system-identification time-series-analysis arma-noise deconvolution de-mixing impulse-response-function greens-function nonlinear-deconvolution irf transfer-function

en: Benchmark demonstration scripts and results

media_type: zip-compressed folder of R scripts and tab-delimited text files

en: Impulse Response Function script

media_type: r script (flat-ascii text)

en: README file for IRFnnhs.R and benchmark demonstration scripts

media_type: flat-ascii text

en:
The R script IRFnnhs.R, which efficiently estimates impulse response functions for environmental systems that are nonlinear, nonstationary, or heterogeneous, based on their input and output time series.

Scripts and results for a series of benchmark tests are also provided, to accompany Kirchner, J.W., Impulse response functions for heterogeneous, nonstationary, and nonlinear systems, estimated by deconvolution and demixing of noisy time series, _Sensors_, 22(9), 3291, https://doi.org/10.3390/s22093291, 2022.

arma-noise

display_name: arma-noise

de-mixing

display_name: de-mixing

deconvolution

display_name: deconvolution

greens-function

display_name: greens-function

impulse-response-function

display_name: impulse-response-function

irf

display_name: irf

irfnnhsr

display_name: irfnnhsr

nonlinear-deconvolution

display_name: nonlinear-deconvolution

system-identification

display_name: system-identification

time-series-analysis

display_name: time-series-analysis

transfer-function

display_name: transfer-function

en: Impulse response functions for nonlinear nonstationary and heterogeneous systems


maintainer: M. Carol Resch

en: nematodes topsoil-removal restoration diversity grassland vegetation long-term-experiment

en: Coordinates of one research plot were wrong. This was corrected in the current version of the file.

en: Nemadotes and vegetation

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

X: X-Coordinate

Y: Y-Coordinate

Ri.veg: Total number of plant species

Div.veg: Shannon diversity of plant species

Ri.nem: Total number of nematode families

Div.nem: Shannon diversity of nematode families

abund: Total nematode abundance (individuals per 100g dry soil)

MI: Maturity index according to Bongers 1990; calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

PPI: Plant parasite index according to Bongers 1990; calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

PPI.MI: Plant parasite to Maturity index according to Bongers, van der Meulen, & Korthals 1997; calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

CI: Channel index according to Ferris, Bongers, & de Goede 2001 (%); calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

EI: Enrichment index according to Ferris, Bongers, & de Goede 2001 (%); calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

SI: Structure index according to Ferris, Bongers, & de Goede 2001 (%); calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

He.a: Herbivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

He.ecto.a: Herbivorous ectoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

He.endo.a: Herbivorous endoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ba.a: Bacterivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Fu.a: Fungivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Om.a: Omnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ca.a: Carnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Om.Ca.a	Sum of omnivorous and carnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014
CP1.a: C-P (colonizer-persister) class 1 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to enrichment indicators according to Ferris, Bongers, & de Goede 2001

CP2.a: C-P (colonizer-persister) class 2 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to stress indicators according to Ferris, Bongers, & de Goede 2001

CP3.a: C-P (colonizer-persister) class 3 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

CP4.a: C-P (colonizer-persister) class 4 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

CP5.a: C-P (colonizer-persister) class 5 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

CP3-5.a: Sum of C-P3, C-P4 and C-P5 nematode abundance (individuals per 100g dry soil) equivalent to structure indicators according to Ferris, Bongers, & de Goede 2001

protect.sp.pro: plant species categorized into species of concern based on their red list status in Switzerland as well as their protection status in Switzerland and the Canton Zurich (Moser, Gygax, Bäumler, Wyler, & Palese, 2002)

tar.sp: Number of target species (all species recorded in the eleven target plots plus propagules of species applied by hand, resulting in a total of 143 species)

Indi.moist: Plant indicator values for soil moisture according to Landolt et al. 2010

Indi.nutri: Plant indicator values for soil nutrients according to Landolt et al. 2010

Management: level of mowing and manuring frequency (35-40 kg N ha-1 application-1); intensity1 = mowing once and no manure; intensity2 = 2-3 times mowing and no manure; intensity3 = 2-3 times mowing and manuring; intensity4 = 4-5 times mowing and manuring

Tillage: last time of tillage

Land.use.history: for Initial plots = recent agricultural use; for all restored sites = agricultural use before restoration
Mowing	earliest date of biomass harvesting (excluding “Initial”) based on contracts between farmers and the Nature Protection Agency of Zurich

Soil.type: based on soil mapping survey 1991 (before restoration)

Soil.texture: determined by the sediment method (Gee & Bauder 1986) and classified into soil textural classes according to FAO (1990)

pH: soil pH (CaCl2)

Slope: slope gradient classes according to FAO (1990; %)

en: Nematode feeding types

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

He.ecto.a: Herbivorous ectoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

He.endo.a: Herbivorous endoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ba.a: Bacterivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Fu.a: Fungivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Om.a: Omnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ca.a: Carnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

en: Nematode colonizer-persister classes

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

CP1.a: C-P (colonizer-persister) class 1 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to enrichment indicators according to Ferris, Bongers, & de Goede 2001
CP2.a: C-P (colonizer-persister) class 2 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to stress indicators according to Ferris, Bongers, & de Goede 2001
CP3.a: C-P (colonizer-persister) class 3 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990
CP4.a: C-P (colonizer-persister) class 4 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990
CP5.a: C-P (colonizer-persister) class 5 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

en: Plant community composition (plant species)

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

column 3-252: Plant abundance per species (in total 252 plant species) expressed as cover percentage estimation according to van der Maarel (vdM 1979; 7 classes: 1-7); nomenclature according to Lauber & Wagner (1996)

en: Nematode families

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

column 3-41: Nematode abundance (individuals per 100g dry soil) per family; nomenclature according to Bongers 1988

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:
 > Resch, M.C., Schütz, M., Graf, U., Wagenaar, R., van der Putten, W.H., Risch, A.C. 2019. Does topsoil removal in grassland restoration benefit both soil nematode and plant communities? Journal of Applied Ecology 56: 1782-1793.

Please cite this paper together with the citation for the datafile.

 Methods
 Study area and experimental settings
The study was conducted in a nature reserve (Eigental: 47° 27’ to 47° 29’ N, 8° 37’ E, 461 to 507 m a.s.l.) that is located on the Swiss Central plateau close to Zurich airport (Canton Zurich, Switzerland). The mean annual temperature in this area ranges from 8.9 to 10.6 °C, mean annual precipitation from 910 to 1260 mm [10-year average (2007-2017); MeteoSchweiz, 2018]. The main soil types are calcaric to gleyic Cambisol and Gleysols. The reserve was established in 1967 to protect small remnants of oligotrophic semi-natural grasslands (roughly 12 ha). The plant community can be characterized as Molinion and Mesobromion (semi-wet to semi-dry), depending on the site-specific groundwater level and slope inclination (Delarze, Gonseth, Eggenberg, & Vust, 2015). These remnants represent species-rich islands in an otherwise intensively managed agricultural landscape. Semi-natural grasslands covered an area of 60,000 ha in the Canton Zurich in 1939, however, by 2005 only roughly 600 ha remained (Baudirektion Kanton Zürich, 2007). In 1990, the government of Canton Zurich decided to enlarge the nature reserve Eigental. The goal was to incorporate eleven patches of 20 ha adjacent intensively farmed land and transform these patches into semi-natural grasslands. The patches had a different agricultural history, ranging from permanent (no tillage for >50 years) to temporary grassland (as part of crop rotation; last tillage <5 years). On all freshly integrated patches fertilization was stopped in 1992 and from then on biomass was harvested three times a year and removed. After 5 years without noticeable effects on vegetation composition, the Nature Conservation Agency of Canton Zurich decided to increase the restoration efforts. In 1995, a large-scale experiment was initialized to evaluate if certain treatments can facilitate restoration within a reasonable timeframe of 5 to 10 years after treatment implementation.
The three restoration treatments used were:
i. “Harvest only”: Plots are being mowed two to three times a year and the biomass is removed.
ii. “Topsoil”: Topsoil was removed to a depth of 10 to 20 cm, depending on the depth of the O and A horizon, in four randomly selected areas within each of the eleven patches in late autumn 1995. The size of each topsoil removal area depended on individual patch size and was between 2700 and 7000 m2.
iii. “Topsoil+Propagules”: Propagules from target vegetation were added on half of the area where topsoil was removed, using fresh, seed-containing hay originating from a mixture of semi-dry to semi-wet species-rich grasslands of local provenance (within a radius of 7 km). Hay applications were conducted twice in 1995 and 1996. Repeated applications were chosen to account for the low quantity of available plant material per transfer, since area ratio between receptor and donor sites was roughly 1:1. In addition, hand-collected propagules from 15 selected target species of regional provenance (within a radius of 30 km) were equally applied in 1996 and 1997.
“Topsoil” and “Topsoil+Propagules” plots are mowed once a year, and the biomass is removed. Mowing on these plots started five years after the treatment was implemented.
Eleven permanent plots of 5 m x 5 m were randomly established in each treatment to monitor the vegetation development. The experiment was complemented with 11 control plots that represent the initial state of intensively managed grasslands, further referred to as “Initial”, and 11 control plots that represent the targeted state of donor sites for “Topsoil+Propagules”, further referred to as “Target”. Consequently, the experiment consists of 55 plots (5 treatments x 11 replicates). Management of intensively used grasslands includes mowing and fertilizing (manure) between two to five times a year, as well as different tillage regimes (no tillage for >50 years; last time of tillage <5 years).

 Nematode and plant sampling
Soil nematodes were sampled in 2 m x 2 m plots, randomly established at least 2 m away from the vegetation plots. We collected eight soil cores with a 2.2 cm diameter soil core sampler (Giddings Machine Company, Windsor, CO, USA) to a depth of 12 cm (representing the majority of the plant rooting system) in each plot at the beginning of July 2017. The eight cores within each replicate plot were combined, gently homogenized, placed in coolers and transported to the laboratory of NIOO in Wageningen, the Netherlands, within one week. Free-living nematodes were extracted from 200 g of fresh soil using Oostenbrink elutriator (Oostenbrink, 1960) and concentrated, resulting in 6 mL nematode solution. The nematode solution was subdivided into three subsamples, two for morphological identification and quantification, and one for molecular work (not used in this study). For morphological identification and quantification, nematodes were heat-killed at 90 °C and fixed in 4 % formaldehyde solution (final volume 10 mL per subsample). All nematodes in 1 mL of formaldehyde solution were counted, and a minimum of 150 individuals per 1 mL sample (or all if less nematodes were present) were identified to family level using Bongers (1988). We then extrapolated the numbers of each nematode taxa identified to the entire sample and expressed them per 100 g dry soil for further analyses.
We calculated number of nematode taxa and Shannon diversity and assessed nematode community composition. In addition, we classified the nematode taxa into feeding types (herbivores, bacterivores, fungivores, omni-carnivores), structural and functional guilds (Table S4). Structural guilds assign nematode taxa according to life-history traits into five colonizer-persister (C-P) classes, ranging from one (early colonizers of new resources) to five (persisters in undisturbed habitats; Bongers 1990). C-P classes can be categorized as indicators for nutrient-enriched (C-P1), stressed (C-P2) and structured (C-P3 + C-P4 + C-P5) soil conditions (Ferris, Bongers, & de Goede, 2001). Functional guilds assign nematode taxa according to their C-P classification combined with their feeding habits (Ferris, Bongers, & de Goede, 2001). Based on the structural and functional guild classification we calculated five additional indices to assess soil nutrient status, disturbance and food web characteristics using NINJA (Sieriebriennikov, Ferris, & de Goede, 2014). 1) The Maturity index indicates the degree of different environmental perturbations (e.g., tillage, nutrient enrichment, pollution) and is used to monitor colonization and subsequent succession after disturbances (Bongers, 1990). 2) The ratio between the Plant Parasite (C-P of herbivorous nematodes only) to Maturity index is used to monitor the recovery of disturbed habitats incorporating information of life-history traits for all feeding types (Bongers, van der Meulen, & Korthals, 1997). 3) The Enrichment index indicates nutrient-enriched soils and agricultural management practices (Ferris, Bongers, & de Goede, 2001). 4) The Structure index provides information about the succession stage of the soil food web and therefore correlates with the degree of maturity of an ecosystem (Ferris, Bongers, & de Goede, 2001). 5) The Channel index provides information about the predominant decomposition pathways, where higher values stand for a higher proportion of energy transformed through the slow fungal decomposition channel (Ferris, Bongers, & de Goede, 2001). In addition, the Structure and Enrichment indices can be displayed in a biplot where nematode assemblages are plotted along a structure (x-axis) and enrichment (y-axis) trajectory (increasing index values). Each biplot quadrat reflects different levels of disturbance, soil nutrient pools and decomposition pathways (Ferris, Bongers, & de Goede, 2001).
The plant surveys were conducted on the 25 m2 permanent plots in June 2017. Plant species cover was visually assessed according to the semi-quantitative cover-abundance scale of Braun-Blanquet (1964; nomenclature: Lauber & Wagner, 1996). We calculated number of species and Shannon diversity, and assessed plant community composition. We also counted the number of target species (all species recorded in the eleven target plots plus propagules of species applied by hand, resulting in a total of 143 species) and categorized plant species into species of concern based on their red list status in Switzerland as well as their protection status in Switzerland and the Canton Zurich (Moser, Gygax, Bäumler, Wyler, & Palese, 2002). Furthermore, we calculated indicator values for soil moisture and soil nutrients for each species according to Landolt et al. (2010).

 References
Baudirektion Kanton Zürich (2007). 10 Jahre Naturschutz-Gesamtkonzept für den Kanton Zürich 1995-2005 – Stand der Umsetzung. Zürich: Baudirektion Kanton Zürich.
Bongers, T. (1988). De nematoden van Nederland. Utrecht: Stichting Uitgeverij Koninklijke Nederlandse Natuurhistorische Vereniging.
Bongers, T. (1990). The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia, 83, 14-19. doi:10.1007/BF00324627
Bongers, T., van der Meulen, H., & Korthals, G. (1997). Inverse relationship between the nematode maturity index and plant parasite index under enriched nutrient conditions. Applied Soil Ecology, 6, 195-199. doi:10.1016/S0929-1393(96)00136-9
Braun-Blanquet, J. (1964). Pflanzensoziologie, Grundzüge der Vegetationskunde (3rd ed.). Wien: Springer.
Delarze, R., Gonseth, Y., Eggenberg, S., & Vust, M. (2015). Lebensräume der Schweiz: Ökologie - Gefährdung - Kennarten (3rd ed.). Bern: Ott.
Ferris, H., Bongers, T., & de Goede, R.G.M. (2001). A framework for soil food web diagnostics: extension of the nematode faunal analysis concept. Applied Soil Ecology, 18, 13-29. doi:10.1016/S0929-1393(01)00152-4
Landolt, E., Bäumler, B., Erhardt, A., Hegg, O., Klötzli, F., Lämmler, W., … Wohlgemuth, T. (2010). Flora indicativa. Ecological indicator values and biological attributes of the Flora of Switzerland and the Alps (2nd ed.). Bern: Haupt.
Lauber, K., & Wagner, G. (1996). Flora Helvetica. Flora der Schweiz. Bern: Haupt.
MeteoSchweiz (2018). Klimabulletin Jahr 2017, Zürich: MeteoSchweiz.
Moser, D., Gygax, A., Bäumler, B., Wyler, N., & Palese, R. (2002) Rote Liste der gefährteten Farn- und Blütenpflanzen der Schweiz. Bern: BUWAL.
Oostenbrink, M. (1960). Estimating nematode populations by some selected methods. In N.J. Sasser & W.R. Jenkins (Eds.), Nematology (pp. 85-101). Chapel Hill: University of North Carolina Press.
Sieriebriennikov, B., Ferris, H., & de Goede, R.G.M (2014). NINJA: An automated calculation system for nematode-based biological monitoring. European Journal of Soil Biology, 61, 90-93. doi:10.1016/j.ejsobi.2014.02.004

diversity

display_name: diversity

grassland

display_name: grassland

long-term-experiment

display_name: long-term-experiment

nematodes

display_name: nematodes

restoration

display_name: restoration

topsoil-removal

display_name: topsoil-removal

vegetation

display_name: vegetation

education

en: Education and science

en: Grassland restoration: nematodes and plant communities


maintainer: Ana Beatriz Pierri Daunt

en: green-infrastructure decision-making landscape-services multifunctionality pdfsearch planning resilience literature-review socio-ecological-system landscape-planning landscape-ecology sense-of-place landscape-perception ecosystem-services

en: 1. Frequency of early concepts.

media_type: CSV

en: 3. Use of any early concept.

en: 2. Frequency of additional concepts.

en: 4. Use of any additional concept.

en: 6. Protocol

media_type: XLSX

en: 5. Planning steps.

en:
Table of content: 1. Frequency of early concepts; 2. Frequency of additional concepts; 3. Use of any early concept; 4. Use of any additional concept, 5. Planning steps; 6. Protocol.

The present dataset is part of the published scientific paper entitled “Landscape ecological concepts in planning: review of recent developments” (Hersperger et al., 2021). The goal of this research was to review recent publications to assess the use of landscape ecological concepts in planning. Specifically, we address the following research questions: Q1. Landscape ecological concepts: What are they? How frequently are they mentioned in current research? Q2. How are landscape ecological concepts integrated in landscape planning?

We analysed all empirical and overview papers that have been published in four key academic journals in the field of landscape ecology and landscape planning in the years 2015–2019 (n = 1918). Four key journals in the field of landscape ecology were selected to conduct the analysis, respectively Landscape Ecology (LE), Landscape Online (LO), Current Landscape Ecology Reports (CLER), and Landscape and Urban Planning (LUP). The title, abstract and keywords of all papers were read in order to identify landscape ecological concepts. Then, all 1918 papers went through a keyword search to identify the use of early and additional concepts. We used the “pdfsearch” package in R programming language and searched for singular and plural forms and different variations of the concepts (see Supplementary material 1, Table A). As a result, we provided four outputs:

  1. Frequency of early concepts. This data provides the total number of times each article used each early concept (Q1). This data was used to produce the Figure 2a at the original publication.

  2. Frequency of additional concepts. This data provides the total number of times each article used each additional concept (Q1). This data was used to produce the Figure 2b at the original publication.

  3. Use of any early concept. This data provides the total number of times each article used any early concept (Q1).
This data was used to produce the Figure 3a at the original publication.

  4. Use of any additional concept. This data provides the total number of times each article used any additional concept (Q1). This data was used to produce the Figure 3b at the original publication.

To address the second question (Q2), the title, abstract and keywords of the papers included in our sample (n=1918 articles) were screened to identify papers that might show how landscape ecological concepts are integrated into planning. We selected 52 empirical papers (see Supplementary material – 4 Integration of landscape ecological concepts into planning), and we provided two outputs:

  5. Planning steps. This data provides the number of times landscape ecological concepts were addressed in each
planning steps in 52 empirical papers analysed in detail (Q2). This data was used to produce the Figure 4 at the
original publication.

  6. Protocol for assessing the integration of landscape ecological concepts into planning. To systematically collect the
data, we used this protocol which addressed the following questions: (a) which type of planning is addressed by the
paper? (b) to which planning level does the paper refer to? (c) which concepts are integrated in any of the planning
steps described above?

decision-making

display_name: decision-making

ecosystem-services

display_name: ecosystem-services

green-infrastructure

display_name: green-infrastructure

landscape-ecology

display_name: landscape-ecology

landscape-perception

display_name: landscape-perception

landscape-planning

display_name: landscape-planning

landscape-services

display_name: landscape-services

literature-review

display_name: literature-review

multifunctionality

display_name: multifunctionality

pdfsearch

display_name: pdfsearch

planning

display_name: planning

resilience

display_name: resilience

sense-of-place

display_name: sense-of-place

socio-ecological-system

display_name: socio-ecological-system

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: The usage of landscape ecological concepts in the planning literature


maintainer: Michael Lehning

en: Description

en: Full Data Description

en: Data Source

media_type: R

en: Hourly Gridded Wind Power Time Series

en: Coordinates of Grid Points

en:
This dataset consist of simulated hourly power production from an Enercon E82 Turbine at 100 m hub-height. It describes the hourly power output a 1MW turbine would produce in each 0.01° grid cell for the years 2016 and 2017.

100 m wind speed data was taken from the COSMO-1 model (Consortium for Small-scale Modeling 2017), which has a 0.01° horizontal resolution. The domain covered is the whole of Switzerland, with the exclusion of lakes. As such, the number of 0.01◦ pixels within Switzerland amounts to 48657.
Conversion to power output was done based on the power curve of the Enercon E82 Turbine. As power output is lower at altitude due to lower air density, we corrected for this effect as described in (Kruyt et al. 2017).

Please cite the following paper in connection with the dataset:

Paper Citation:
 > _Bert Kruyt, Jérôme Dujardin, and Michael Lehning: Improvement of wind power assessment in complex terrain: The case of COSMO-1 in the Swiss Alps, Front. Energy Res., [doi:10.3389/fenrg.2018.00102] (https://doi.org/10.3389/fenrg.2018.00102)_

mountain-wind-potential

display_name: mountain-wind-potential

topography

display_name: topography

wind-energy

display_name: wind-energy

en: Dataset on Cosmo-1 based Energy Potential in Swiss Alps


wind-lidar-davos-wolfgang

title_for_slug: wind-lidar-davos-wolfgang

en: raclets lidar profiles wind wolfgangpass

en: Wind LIDAR data Wolfgang

media_type: application/zip

en: A Leosphere WidCube 100S was deployed at Davos Wolfang, measuring wind profiles as well as performing PPI and RHI scans. Time format is in UTC with highest time resolution of 5 seconds.

en: Scanning wind Lidar from Meteoswiss was installed at Davos Wolfgang (LON: 9.853594, LAT: 46.835577) and measured from 200 m above ground to 8100 m. The time resolution is up to 5 seconds. The Lidar was measuring wind profiles but also performed plan position indicator (PPI) and range height indicator (RHI) scans.

lidar

display_name: lidar

profiles

display_name: profiles

raclets

display_name: raclets

wind

display_name: wind

wolfgangpass

display_name: wolfgangpass

education

en: Education and science

en: Wind LIDAR Davos Wolfgang


maintainer: Frank Techel

en: snow alps avalanches observations shapefile

en: Selected wet snow avalanche activity data Davos, Switzerland (2011-2014)

en: Zip archive with shapefiles for the selected wet snow avalanche polygons, including metadata.

en:
Polygons of wet snow avalanches in the Davos area, as documented by the Swiss avalanche warning service. The georeferenced outlines of the avalanches contain both the release as well as the deposit area, but without separating between both.

The dataset is a subset of the total record of 1615 avalanches classified as wet snow avalanches from October 2011 - September 2014, containing those 255 avalanches exceeding 0.0125 km^2. Every polygon comes with meta data, including the date of occurrence.

This dataset is the underlying dataset to:
Wever, N., Vera Valero, C. and Techel, F. (2018) _Coupled snow cover and avalanche dynamics simulations to evaluate wet snow avalanche activity_. Submitted to J. Geophys. Res., in review.

alps

display_name: alps

avalanches

display_name: avalanches

observations

display_name: observations

shapefile

display_name: shapefile

snow

display_name: snow


maintainer: Albrecht von Boetticher

en: debris-flow natural-hazard dberisintermixing shallow-landslide finite-volumes hangmuren interfoam barrier-impact-simulation murgang

en: These are the installation instructions for debrisInterMixing4

en: debrisInterMixing for OF-Version 6

en: Installation Instructions for debrisInterMixing-6

en:
This version of debrisInterMixing is based on OpenFOAM Version 4.x and was tested on Ubuntu 18.04.1 LTS.
Please follow the instructions given in ReadMe_debrisInterMixing4.pdf for installation.

en:
Here the updated versions of debrisInterMixing are provided for download. The first OpenFoam-compatible Version 2.3.x are available as supplement to v. Boetticher, A., Turowski, J. M., McArdell,W. B., Rickenmann, D., Hürlimann, M., Scheidl, C., and Kirchner, J. W.: DebrisInterMixing-2.3: A Finite Volume solver for three dimensional debris flow simulations based on two calibration parameters. Part two: model validation with experiments. Geoscientific Model Development, 10, 11: 3963-3978. doi: 10.5194/gmd-10-3963-2017.
DebrisInterMixing is a Volume-of-Fluid based Finite Volume code that accounts for shear-thinning sensitive shares of fine sediment suspension together with pressure-sensitive components of the gravel grains within debris flow mixtures. All model properties can be derived from a material sample except for a grid-sensitive calibration parameter.
For more information, please contact albrecht.vonboetticher@wasserbau.ch.

barrier-impact-simulation

display_name: barrier-impact-simulation

dberisintermixing

display_name: dberisintermixing

debris-flow

display_name: debris-flow

finite-volumes

display_name: finite-volumes

hangmuren

display_name: hangmuren

interfoam

display_name: interfoam

murgang

display_name: murgang

natural-hazard

display_name: natural-hazard

shallow-landslide

display_name: shallow-landslide

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Three-dimensional debris flow simulation tool debrisInterMixing


maintainer: Marcus Schaub

en: lwf tree dbh swiss-forest-lab forest diameter-at-breast-height crown-condition irrigation scots-pine drought tree-species

en: Site photo 2

media_type: JPEG

en: Site photo 3

en: Swiss Forest Health Inventory

media_type: text/html

format: HTML

mimetype: text/html

en: Dataset

en: Shapefile	of measurement location

media_type: URL

en: Long-term Irrigation	Experiment Pfynwald homepage

en: Site photo 1

en: To study the performance of mature Scots pine (_Pinus sylvestris_ L.) under chronic drought conditions in comparison to their immediate physiological response to drought release, a controlled long-term and large-scale irrigation experiment has been set up in 2003. The experiment is located in a xeric mature Scots pine forest in the Pfynwald (46° 18' N, 7° 36' E, 615 m a.s.l.) in one of the driest inner-Alpine valleys of the European Alps, the Valais (mean annual temperature: 9.2°C, annual precipitation sum: 657 mm, both 1961-1990). Tree age is on average 100 years, the top height is 10.8 m and the stand density is 730 stems ha-1 with a basal area of 27.3 m2 ha-1. The forest is described as _Erico Pinetum sylvestris_ and the soil is a shallow pararendzina characterized by low water retention. The experimental site (1.2 ha; 800 trees) is split up into eight plots of 1'000 m2 each. During April-October, irrigation is applied on four randomly selected plots with sprinklers of 1 m height at night using water from an adjacent water channel. The amount of irrigation corresponds to a supplementary rainfall of 700 mm year-1. Trees in the other four plots grow under naturally dry conditions. Soil moisture has been monitored since the beginning of the project at 3 soil depths (10, 20 and 60 cm). The crown condition of each tree is being assessed each year since 2003. Tree measurement data such as diameter at breast height, tree height, and social status were assessed in 2002, 2009 and 2014. The duration of the irrigation experiment is planned for 20 years.

crown-condition

display_name: crown-condition

dbh

display_name: dbh

diameter-at-breast-height

display_name: diameter-at-breast-height

drought

display_name: drought

forest

display_name: forest

irrigation

display_name: irrigation

lwf

display_name: lwf

scots-pine

display_name: scots-pine

swiss-forest-lab

display_name: swiss-forest-lab

tree

display_name: tree

tree-species

display_name: tree-species

en: Tree measurements 2002-2016 from the long-term irrigation experiment Pfynwald, Switzerland


maintainer: EnviDat Support

en: alptal switzerland studibach time-series groundwater

media_type: text/plain

en:
Groundwater time series of the monitoring network in the Studibach (C7) catchment, Alptal, Switzerland published in
Rinderer M., van Meerveld I, McGlynn B. (2019): From points to patterns – Assessing runoff source area dynamics and hydrological connectivity using time series clustering. Water Resources Research, doi: 2018WR023886R

mimetype: text/plain

en: Groundwater time series between 2010 and 2014 of the distributed monitoring system in the Studibach (C7), Alptal, Switzerland. Data published in Rinderer M., van Meerveld I, McGlynn B. (2019): From points to patterns – Assessing runoff source area dynamics and hydrological connectivity using time series clustering. Water Resources Research, doi: 2018WR023886R

alptal

display_name: alptal

groundwater

display_name: groundwater

studibach

display_name: studibach

switzerland

display_name: switzerland

time-series

display_name: time-series

education

en: Education and science

en: Groundwater time series Studibach (Rinderer et al., 2019, WRR)