greenland-shrubs-and-microclimate

maintainer: Nathalie Chardon

title_for_slug: greenland-shrubs-and-microclimate

en: sdm arctic validation accessible-shrub-forest climate field-data

en: GitLab Repository

en: Zip drive of GitLab repository contents (https://gitlab.com/nathaliechardon/gl_microclim).

en: Nuup Kangerlua

en:
 Collected July-August 2011-2013 (PI: Jacob Nabe-Nielsen)

These data collected July-August 2011-2013 (PI: Jacob Nabe-Nielsen). Please contact J. Nabe-Nielsen (jnn_at_ecos.au.dk) to request access to data on all surveyed shrub species. Available here are only data used in Chardon et al. 2022.

 COLUMN ABBREVIATIONS

 Metadata for 90 m spatial grid

year: sampling year

alt: average altitude of grid as recorded during field surveys [m]

long: WGS84 longitude

lat: WGS84 latitude

x_stere: longitude in Polar Stereographic (EPSG 4326)

y_stere: latitude in Polar Stereographic (EPSG 4326)

 Species presence [1] or absence [0] at grid level

pa_bena: _Betula nana_

pa_sagl: _Salix glauca_

 Shrub species cover (calculated from pin hits in 0.7 x 0.7 m frame, based on total of 25 hits) [%]

cov_bena: _Betula nana_ cover

cov_sagl: _Salix glauca_ cover

 Downscaled climate (time series 1984 – 2013)

tempjja: average maximum June-August temperature [ºC]

tempmax: yearly maximum temperature [ºC]

tempmin: yearly minimum temperature [ºC]

tempcont: yearly maximum – minimum temperature [ºC]

precipmam: cumulative March-May precipitation [mm]

precipjja: cumulative June-August precipitation [mm]

insoljja: average June-August insolation [MJ cm-2 yr-1]

 Topography and terrain wetness (calculated from)

twi: SAGA wetness index (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015)

slope: slope angle (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

asp: aspect (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

tcws: Tasseled Cap Wetness component (Sentinal images)

 Community characteristics

rich: shrub species richness averaged across pin-point frames per grid

shan: Shannon diversity (‘vegan’ package; Oksanen et al. 2019)

comp_bena: shrub competition on Betula nana (i.e. summed cover of non-_B. nana_ species) [% cover]

comp_sagl: shrub competition on Salix glauca (i.e. summed cover of non-_S. glauca_ species) [% cover]

en: Kangerluarsunnguaq

en:
 Collected August 2020 (PI: Nathalie Isabelle Chardon)

These data collected August 2020 (PI: Nathalie Isabelle Chardon). Please contact N. I. Chardon (nathalie.chardon_at_gmail.com) for individual quadrat (i.e. 1 m x 1 m) data, which are averaged at the 90 m spatial grid here.

 COLUMN ABBREVIATIONS

 Metadata for 90 m spatial grid

id: sampling zone and unique 90 m grid identifier

long: WGS84 longitude

lat: WGS84 latitude

x_stere: longitude in Polar Stereographic (EPSG 4326)

y_stere: latitude in Polar Stereographic (EPSG 4326)

date: sampling day.month.year

 Species presence [1] or absence [0] at grid level

alcr: _Alnus crispa_

bena: _Betula nana_

dila: _Diapensia lapponica_

emni: _Empetrum nigrum_

hahy: _Harimanella hypoides_

lopr: _Loiseleuria procumbens_

oxpa: _Oxycoccus palustre_

phca: _Phyllodoce caerulea_

rhod: _Rhododendron_ sp.

saar: _Salix arctica_

sagl: _Salix glauca_

sahe: _Salix herbacea_

vaul: _Vaccinium uliginosum_

drin: _Dryas integrifolia_

thpr: _Thymus praecox_

 Habitat characteristics [% cover]

shrub: all shrub species

gram: graminoids

forb: forbs

bryo: bryophytes

lich: lichens

litt: litter

bare: bare ground

stone: stones (> 2 cm)

org: organic crust

 Shrub species height (maximum vegetative height) [mm] and cover (estimated in 1x1 m quadrat) [%]

alcr_c: _Alnus crispa_ cover

alcr_h: _Alnus crispa_ height

bena_c: _Betula nana_ cover

bena_h: _Betula nana_ height

dila_c: _Diapensia lapponica_ cover

dila_h: _Diapensia lapponica_ height

emni_c: _Empetrum nigrum_ cover

emni_h: _Empetrum nigrum_ height

hahy_c: _Harimanella hypoides_ cover

hahy_h: _Harimanella hypoides_ height

lopr_c: _Loiseleuria procumbens_ cover

lopr_h: _Loiseleuria procumbens_ height

oxpa_c: _Oxycoccus palustre_ cover

oxpa_h: _Oxycoccus palustre_ height

phca_c: _Phyllodoce caerulea_ cover

phca_height: _Phyllodoce caerulea_ height

rhod_c: _Rhododendron_ sp. cover

rhod_h: _Rhododendron_ sp. height

saar_c: _Salix arctica_ cover

saar_h: _Salix arctica_ height

sagl_c: _Salix glauca_ cover

sagl_h: _Salix glauca_ height

sahe_c: _Salix herbacea_ cover

sahe_h: _Salix herbacea_ height

vaul_c: _Vaccinium uliginosum_ cover

vaul_h: _Vaccinium uliginosum_ height

drin_c: _Dryas integrifolia_ cover

drin_h: _Dryas integrifolia_ height

 Community characteristics

rich_pa: shrub species richness at grid level

rich: shrub species richness averaged across 3 1x1 m sampling quadrats per grid

shan: Shannon diversity (‘vegan’ package; Oksanen et al. 2019)

comp_bena: shrub competition on _Betula nana_ (i.e. summed cover of non-_B. nana_ species) [% cover]

comp_sagl: shrub competition on _Salix glauca_ (i.e. summed cover of non-_S. glauca_ species) [% cover]

ht_cwm: maximum shrub canopy height (i.e. community weighted mean by abundance of maximum shrub height) [mm]

 Topography and terrain wetness (calculated from)

tcws: Tasseled Cap Wetness component (Sentinal images)

slope: slope angle (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

twi: SAGA wetness index (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015)

asp: aspect (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

 Downscaled climate (time series 1984 – 2013)

insoljja: average June-August insolation [MJ cm-2 yr-1]

precipmam: cumulative March-May precipitation [mm]

tempcont: yearly maximum – minimum temperature [ºC]

tempmin: yearly minimum temperature [ºC]

precipjja: cumulative June-August precipitation [mm]

tempjja: average maximum June-August temperature [ºC]

tempmax: yearly maximum temperature [ºC]

en:
 Study Aim

We collected these data to alternatively train and validate high resolution (~ 90 m) Species Distribution Models (SDMs) and Species Abundance Models (SAMs) for _Betula nana_ L. (dwarf birch, Betulaceae) and _Salix glauca_ L. (grey willow, Salicaceae) in Southwest Greenland to assess how well such models can predict local-scale patterns.

 Data Description

Individual (presence-absence, abundance, maximum vegetative height) and community (species composition, maximum canopy height) shrub data for two fjords near Nuuk, Southwest Greenland. Also provided are corresponding downscaled climate data as well as calculated topographic and terrain wetness indicator variables.

 Nuup Kangerlua (Godthåbsfjord)

_Betula nana_ and _Salix glauca_ presence-absence, abundance, community species richness

 Kangerluarsunnguaq (Kobbefjord)

Shrub presence-absence, abundance, maximum vegetative height, community composition, maximum shrub canopy height

 Methods

 Field survey in Nuup Kangerlua

We conducted a stratified systematic plant survey along the length of Nuup Kangerlua (NK) fjord in Soutwesth Greenland (Fig. 1 in Chardon et al. 2022; following Nabe-Nielsen et al., 2017). At five distinct sites, we sampled along elevational gradients to collect data on presences, absences, abundance, and species composition of all woody species using a 0.7 x 0.7 m pin-point frame (Fig. 1e in Chardon et al. 2022). For model training, we converted these pin-point data to percent cover estimates based on the number of pins dropped (n = 25 per plot) and averaged them across the 119 spatio-climatic grids (see next section) corresponding to the plot locations (for details see Appendix S2 in Chardon et al. 2022).

 Field survey in Kangerluarsunnguaq

We conducted a random stratified plant survey in Kangerluarsunnguaq (K) fjord in Southwest Greenland. We used a preliminary Species Abundance Model trained with summed pin counts of _Betula nana_ in NK fjord (see Fig. S1.3 in Chardon et al. 2022) to stratify the ~ 27 x 17 km fjord landscape into low, medium, and high abundances classes. We randomly selected 90 x 90 m spatio-climatic grids to survey in each class for a total of 200 grids, ensuring that they were accessible by foot or boat (for details see Appendix S2 in Chardon et al. 2022). Within each grid, we sampled within three 1 m2 quadrats arranged in a randomly rotated equilateral triangle centered on the mid-point of the cell. We used a gridded sampling quadrat with 1% delineations (Fig. 1h in Chardon et al. 2022) to record woody species presences, absences, and composition, estimated percent cover, and measured maximum shrub species vegetatitve height. At every plot, we also visually scanned the area in a 20 m radius from the plot and recorded the presence of any additional shrub species to estimate grid-level species richness. As in NK fjord, we averaged these data at the grid level (for details see Appendix S2 in Chardon et al. 2022).

 Biotic variables

We calculated biotic microscale variables from the plant survey data collected in NK and K fjords. We calculated shrub species richness, diversity, and competition (i.e. sum of non-B. nana or non-S. glauca pin hits or percent cover). In K fjord, we also calculated canopy height as the community weighted mean (by abundance) of maximum vegetative shrub height.

 Climate variables

We computed high resolution temperature, precipitation, and insolation for local scale data for the study area by statistically downscaling climate time series (1982 - 2013) from the monthly CHELSA data (Karger et al. 2017). We downscaled these data from 30 arc sec (~ 400 m at the latitude of our study) to our target grid size of ~ 90 m with geographic weighted regression and using the MEaSUREs Greenland Ice Mapping Project (GIMP) Digital Elevation Model (DEM) v. 1 (Howat et al., 2014, 2015). We then calculated 30-year averages of the climate parameters: average summer (June – August) maximum temperature, yearly maximum temperature, yearly minimum temperature, temperature continentality (yearly max. - min. temperatures), cumulative Spring (March – May) precipitation, cumulative summer precipitation, and average summer incident solar radiation (henceforth, insolation) (for calculation details see Appendices S2, S3 in Chardon et al. 2022 and Appendix S2 in von Oppen et al. 2021).

 Topography and terrain wetness indicator variables

We calculated several topographic and terrain wetness indices at a local scale. We derived slope, aspect, and the SAGA wetness index (hereafter TWI; Boehner et al., 2002; Boehner and Selige, 2006) from the GIMP DEM. TWI is a measure of how ‘wet’ an area is, based on water drainage from the surrounding landscape. We also calculated the tasseled cap wetness component (hereafter TCW, Crist and Cicone 1984) from satellite images (for details see Appendices S2, S3 in Chardon et al. 2022) as an alternative measure of wetness.

 Computer code

Attached as zip file and available on GitLab (https://gitlab.com/nathaliechardon/gl_microclim)

 Third-party data

Data used to calculate climate, topography, and terrain wetness indicator variables are publicly available (see Appendix S2 in Chardon et al. 2022 for all data references).

accessible-shrub-forest

display_name: accessible-shrub-forest

arctic

display_name: arctic

climate

display_name: climate

field-data

display_name: field-data

sdm

display_name: sdm

validation

display_name: validation

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Greenland shrubs and microclimate


maintainer: Ionut Iosifescu Enescu

en: open-data research-data-management open-science reproducibility open-source jupyter-notebooks hpc

state: active

type: dataset

en: Open Science Support @ WSL (Poster)

media_type: application/pdf

format: PDF

mimetype: application/pdf

en:
This poster was originally created for the swissuniversities Open Science Action Plan: Kick-Off Forum, and showed to the audience on 17.10.2019. It illustrates how the environmental data portal EnviDat provides the tools for fostering Open Science and Reproducibility of scientific research at WSL.

Supporting open science is a highly relevant user requirement for EnviDat and for implementing FAIR (Findability, Accessibility, Interoperability and Reusability) principles at dataset level.
EnviDat encourages WSL scientists to complement data publication with a complete description of research methods and the inclusion of the open source software, code or scripts used for processing the dataset or for obtaining the published results. By openly publishing open software (e.g. as Jupyter notebooks) alongside research data sets, researchers can contribute to mitigate reproducibility issues.

EnviDat also promotes and supports, where possible and practical, the publication of software as Jupyter notebooks. Jupyter notebooks provide a solution for improved documentation and interactive execution of open code in a wide range of programming languages (Python, R, Octave/Matlab, Java or Scala). These programming languages are widely used in environmental research at WSL and well supported by the Jupyter-compatible kernels. We have sucessfully interfaced EnviDat-hosted notebooks with the WSL High-Performance Computing (HPC) Linux Cluster through a JupyterHub/JuypterLab beta installation on the HPC cluster implemented in close collaboration with the WSL IT-Services.
For existing software that cannot be easily migrated to Jupyter Notebooks, the Open Science and Reproducibility is assisted by containerisation. We have proven that several Singularity containers can successfully run on WSL's HPC cluster.

Finally, the researchers can upload the data/results complemented by code (e.g. as Jupyter Notebooks, or Singularity containers) and any additional documentation in EnviDat. Consequently, they will receive a DOI for the entire dataset, which they can reference in their science paper in order to publish a more reproducible research.

_License_: This poster is released by WSL and the EnviDat team to the public domain under a Creative Commons 4.0 CC0 "No Rights Reserved" international license. You can reuse this poster in any way you want, for any purposes and without restrictions.

hpc

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jupyter-notebooks

display_name: jupyter-notebooks

open-data

display_name: open-data

open-science

display_name: open-science

open-source

display_name: open-source

reproducibility

display_name: reproducibility

research-data-management

display_name: research-data-management

education

fr: Education, science

de: Bildung, Wissenschaft

en: Education and science

it: Formazione e scienza

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Open Science Support at the Swiss Federal Research Institute WSL. The EnviDat Concept


maintainer: EnviDat Support

en: meteo wind-speed temperature precipitation relative-humidity long-term par swiss-forest-lab climate-change meteorology

en: Data plot of the forest station (LEB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Forest station data (LEB)

media_type: text/csv

en: Data file.

format: CSV

mimetype: text/csv

en: Site photo of the forest station (LEB)

media_type: image/jpeg

en: Site photo of the forest station from below (viewing upwards the slope)

format: SERVICE

mimetype: image/jpeg

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for one meteorological station in Lens in Switzerland which is located within a natural coniferous forest with Scots pine (_Pinus sylvestris_; 150-170 yrs)) as dominant tree species. The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Lens is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Lens, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


en: fish dna-metabarcoding marine fjord biodiversity environmental-dna plankton

en: Code, data and figures

media_type: ZIP

en: Here there are all the data and code to reproduce the figures and analysis presented in the paper, with a README.md file

format: ZIP

en: Metabarcoding data

en: Raw metabarcoding data for both primers (teleo and 18S) and corresponding file to perform the demultiplexing and primer trimming

en:
This dataset contains the raw environmental DNA data associated with the publication *Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord* in the journal Polar Biology (2023).

 Methods

**Sampling**
We sampled the Lilliehöök fjord on the west coast of Spitsbergen (Svalbard, Norway) over 3 days from 3 to 5 of August 2021. Samples were taken from the glacier front up to the fjord mouth of the Krossfjorden system, around 30 km long, after the Lilliehöök fjord merged with the mouth of Möller fjord. The fjord’s maximum depth has been recorded at 373 m (Svendsen et al. 2002) and has no sill at its entrance, thereby facilitating water exchange with the open ocean of the West Spitsbergen Current. We used a research vessel to sample 5 sites for a total of 15 samples, sampling 3 depths per site (3-m, chlorophyll a maximum and 85-m, unless sea floor was shallower). Shallow and intermediate samples between 3-m and 12-m represent ~35-L of water filtered in-situ using long tubing and a peristaltic pump, and all other deeper samples were taken from a total of 3 Niskin bottles (General Oceanics), representing 22-L of water sampled per sample. Water was filtered through a VigiDNA filtration capsule (SPYGEN) with a 0.20-µm pore size using an Athena peristaltic pump (Proactive Environmental Products, Bradenton, Florida) with a flow rate of ~1-L/min. Each sample was handled with single use tubing and gloves.

**Molecular**
To perform the amplification, we used two sets of primers: teleo (forward: ACACCGCCCGTCACTCT, reverse: CTTCCGGTACACTTACCATG; Valentini et al. 2016) and the universal eukaryotic 1389F/1510R primer pair, amplifying the V9-18S rDNA gene (Amaral-Zettler et al. 2009) (forward: TTGTACACACCGCCC, reverse: CCTTCYGCAGGTTCACCTAC).

 Data content:

+ Metabarcoding data: This zip file contains the 2 sequencing libraries filtered to only retain the samples used in the present study.
+ Code, data and figure: This zip file contains all data and code to reproduce the figures and the analysis in the study, with an associated README explaining the content of each folder.

 Additional informations
For more details, please see the Methods in the associated publication: DOI: 10.1007/s00300-023-03187-9.

biodiversity

display_name: biodiversity

dna-metabarcoding

display_name: dna-metabarcoding

environmental-dna

display_name: environmental-dna

fish

display_name: fish

fjord

display_name: fjord

marine

display_name: marine

plankton

display_name: plankton

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data: Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord


maintainer: Matthias Haeni

en: meteorology par relative-humidity climate-change swiss-forest-lab temperature wind-speed precipitation long-term meteo

en: Data plot of the field station (ISF)

en: Site aerial photo (Isone)

en: Site aerial photo from both Isone stations. Source: Google. 2016. Site aerial photo from both Isone stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Data plot of the forest station (ISB)

en: Site photo of the field station (ISF)

en: Site photo of the field station from the side.

en: Forest station data (ISB)

en: Site photo of the forest station (ISB)

en: Site photo of the forest station from below (viewing upwards the slope).

en: Field station data (ISF)

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Isone in Switzerland where one station is located within a natural broad-leaved forest stand (ISB) with European beech (_Fagus sylvatica_; 70-100 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, ISF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Isone is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

education

en: Education and science

en: EnviDat: the Environmental Data Portal

en: Isone, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


maintainer: Marcus Schaub

en: scots-pine diameter-at-breast-height irrigation lwf crown-condition tree-species forest drought dbh tree swiss-forest-lab

en: Long-term Irrigation	Experiment Pfynwald homepage

media_type: text/html

format: HTML

mimetype: text/html

en: Shapefile	of measurement location

media_type: URL

en: Site photo 1

media_type: JPEG

en: Site photo 2

en: Site photo 3

en: Dataset

media_type: XLSX

format: XLS

en: Swiss Forest Health Inventory

en: To study the performance of mature Scots pine (_Pinus sylvestris_ L.) under chronic drought conditions in comparison to their immediate physiological response to drought release, a controlled long-term and large-scale irrigation experiment has been set up in 2003. The experiment is located in a xeric mature Scots pine forest in the Pfynwald (46° 18' N, 7° 36' E, 615 m a.s.l.) in one of the driest inner-Alpine valleys of the European Alps, the Valais (mean annual temperature: 9.2°C, annual precipitation sum: 657 mm, both 1961-1990). Tree age is on average 100 years, the top height is 10.8 m and the stand density is 730 stems ha-1 with a basal area of 27.3 m2 ha-1. The forest is described as _Erico Pinetum sylvestris_ and the soil is a shallow pararendzina characterized by low water retention. The experimental site (1.2 ha; 800 trees) is split up into eight plots of 1'000 m2 each. During April-October, irrigation is applied on four randomly selected plots with sprinklers of 1 m height at night using water from an adjacent water channel. The amount of irrigation corresponds to a supplementary rainfall of 700 mm year-1. Trees in the other four plots grow under naturally dry conditions. Soil moisture has been monitored since the beginning of the project at 3 soil depths (10, 20 and 60 cm). The crown condition of each tree is being assessed each year since 2003. Tree measurement data such as diameter at breast height, tree height, and social status were assessed in 2002, 2009 and 2014. The duration of the irrigation experiment is planned for 20 years.

crown-condition

display_name: crown-condition

dbh

display_name: dbh

diameter-at-breast-height

display_name: diameter-at-breast-height

drought

display_name: drought

forest

display_name: forest

irrigation

display_name: irrigation

lwf

display_name: lwf

scots-pine

display_name: scots-pine

tree

display_name: tree

tree-species

display_name: tree-species

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Tree measurements 2002-2016 from the long-term irrigation experiment Pfynwald, Switzerland


lidar-davos-wolfgang

maintainer: Patric Seifert

title_for_slug: lidar-davos-wolfgang

en: raclets lidar polly clouds tropos

en: Raman Lidar Davos

en: A portable Raman lidar system (Polly) from Leibnitz Institute for Tropospheric Research (Tropos) was deployed at Davos Wolfgang (LON: 9.853594, LAT: 46.835577). Please use this [link](http://polly.tropos.de/?p=lidarzeit&Ort=39), to be directly forwarded to the Davos location and select the date of interest from the calendar (bold numbers). The data can be requested directly at the Polly team.

clouds

display_name: clouds

lidar

display_name: lidar

polly

display_name: polly

raclets

display_name: raclets

tropos

display_name: tropos

en: LIDAR Davos Wolfgang


en: switzerland snow climate-change alpine3d-simulations graubunden

en: Simulation data

en: Reference data as well as the 2050 and 2099 scenarios for ARPEGE and ETHZ other RCMs available on demand)

en: Configuration file

media_type: ini

en:
This is the simulation dataset from _"Response of snow cover and runoff to climate change in high Alpine catchments of Eastern Switzerland"_, M. Bavay, T. Grünewald, M. Lehning, Advances in Water Resources 55, 4-16, 2013

A model study on the impact of climate change on snow cover and runoff has been conducted for the Swiss Canton of Graubünden. The model Alpine3D has been forced with the data from 35 Automatic Weather Stations in order to investigate snow and runoff dynamics for the current climate. The data set has then been modified to reflect climate change as predicted for the 2021-2050 and 2070-2095 periods from an ensemble of regional climate models.

The predicted changes in snow cover will be moderate for 2021-2050 and become drastic in the second half of the century. Towards the end of the century the snow cover changes will roughly be equivalent to an elevation shift of 800 m. Seasonal snow water equivalents will decrease by one to two thirds and snow seasons will be shortened by five to nine weeks in 2095.

Small, higher elevation catchments will show more winter runoff, earlier spring melt peaks and reduced summer runoff. Where glacierized areas exist, the transitional increase in glacier melt will initially offset losses from snow melt. Larger catchments, which reach lower elevations will show much smaller changes since they are already dominated by summer precipitation.

graubunden

display_name: graubunden

snow

display_name: snow

switzerland

display_name: switzerland

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: Alpine3D simulations of future climate scenarios for Graubunden


en: honeybees sustainability urban-biodiversity urbanization remote-sensing pollination

en: Dataset 1

media_type: CSV

en: Dataset 1: Processed data for urban beekeeping 2012-2018

en: Dataset 3

media_type: .csv

en: Aggregated data on number hives, beekeeping locations and ratios

en: Dataset 2

en: Dataset 2: Processed data for modelling balance urban greenspace

en: Data on: (1) spatial distribution of urban beekeeping (number of hives and number of beekeeping locations) in 14 Swiss cities (Geneva, Lausanne, Biel, Neuchatel, Basel, Zurich, Chur, Luzern, St. Gallen, Winterthur, Bern, Lugano, Bellinzona, Thun) for the period 2012-2018; (2) aggregated data to model the sustainability of urban beekeeping.

honeybees

display_name: honeybees

pollination

display_name: pollination

remote-sensing

display_name: remote-sensing

sustainability

display_name: sustainability

urban-biodiversity

display_name: urban-biodiversity

urbanization

display_name: urbanization

en: Challenging the sustainability of urban beekeeping: evidence from Swiss cities


maintainer: Christian G. Sommer

en: snow wind-tunnel wind-crust kinect wind-packing

en: Kinect data

media_type: Link

en: Links to the dataset

en: README

media_type: text/plain

en: Describes the dataset in detail

format: TXT

mimetype: text/plain

en: Processing scripts

media_type: application/zip

en: Contains the Matlab- and R-scripts used to process the Kinect data

mimetype: application/zip

en:
This data sets contains the Microsoft Kinect data from 15 wind tunnel experiments on wind-packing / wind crust formation. These experiments were performed in the winter 2016/17. The Kinect measures distributed snow depth.

The Kinect data is organized per experiment. Each experiment subfolder contains the processed Kinect depth images and some additional files.

Please refer to the README for more details on the data. The processing scripts are available for download as well. The scripts are mainly provided as documentation and would need to be adjusted to be used.

This dataset is the basis of the following publication:

Sommer C.G., Lehning M. & Fierz C. (2018). Wind Tunnel Experiments: Influence of Erosion and Deposition on Wind-Packing of New Snow. Front. Earth Sci. 6:4. doi: 10.3389/feart.2018.00004

kinect

display_name: kinect

wind-crust

display_name: wind-crust

wind-packing

display_name: wind-packing

wind-tunnel

display_name: wind-tunnel

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Wind crust formation: Microsoft Kinect data


en: soil-water-content soil-moisture soil-water-matrix-potential soil-temperature landslide-early-warning

en: Detailed description of soil moisture measurment sites, soil properties and sensor installations (in German)

media_type: PDF

en: In-situ soil moisture measurements, Napf, 2021-2022

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each. Meteorological variables such as air temperature or precipitation can be received from MeteoSwiss.
Time intervall: 1 hour.
Measurement period: June 2021-Dec 2022.
Location: flat terrain, meadow (official MeteoSwiss station)
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Langnau i E, 2021-2022

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each. Meteorological variables, such as air temperature or precipitation can be received from MeteoSwiss.
Time intervall: 1 hour. Measurement period: June 2021-Dec 2022.
Location: flat terrain, meadow (measurement site of MeteoSwiss)
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Ranflüh, 2021-2022

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, as well as air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: April 2021-Dec 2022.
Location: hillslope, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Wasen i.E., flat location, 2019-2022

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, and two additional soil temperature measurements (oC), air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: April 2019-Dec 2022.
Location: flat terrain, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Wasen i.E., steep slope, 2019-2022

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, and two additional soil temperature measurements (oC), air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: April 2019-Dec 2022.
Location: steep hillslope, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Trub, 2021-2022

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, as well as air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: April 2021-Dec 2022.
Location: slope, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In the context of landslide early warning research, soil moisture (e.g. volumetric soil water content and soil water potential) has been measured at six locations in the Napf-region (Emmental, central Switzerland) since April 2019. Here, we provide the hourly mean values of all sensors from all 6 locations after a comprehensive data control, filtering and aggregation (from 10-min to 1-hour values). A sub-set of these data (for the locations Wasen i.E.) has previously been published in envidat.ch at https://www.doi.org/10.16904/envidat.369 applying the same data post-processing method. The dataset is complemented with meteorological data (locally measured air temperature and precipitation) as well as soil temperature. A detailed description of the sites and measurement installations can be found in a separate report (attached with the data).

landslide-early-warning

display_name: landslide-early-warning

soil-moisture

display_name: soil-moisture

soil-temperature

display_name: soil-temperature

soil-water-content

display_name: soil-water-content

soil-water-matrix-potential

display_name: soil-water-matrix-potential

education

en: Education and science

en: EnviDat: the Environmental Data Portal

en: In-situ soil moisture measurements Napf-region 2019-2022


en: treeline tree-rings fertilization dwarf-shrubs nitrogen-isotope stillberg

en: Metadata Nutrient Addition Stillberg Experimental Design

media_type: PNG

en: Nutrient addition map of the study area with the investigated plots. Each circle (study block) contains one control plot and two plots that received NPK fertilizer corresponding to 15 (NPK15) or 30 (NPK30) kg N ha-1 a-1. Contour lines specify the elevation (m a.s.l.) in steps of 10 m.

format: PNG

en: Data Nutrient Addition Stillberg

media_type: https

en: This link leads to the figshare repository, which contains all nutrient addition data.

en: Project Description Nutrient Addition Stillberg

media_type: HTML

en: Link to Nutrient Addition project description on the WSL website (in German).

en:
 Background information

The availability of nitrogen (N) and phosphorus (P) is considered to be a major factor limiting growth and productivity in terrestrial ecosystems globally. This project aimed to determine whether the growth stimulation documented in previous short‐term fertilisation trials persisted in a longer‐term study (12 years) in the treeline ecotone, and whether possible negative effects of nutrient addition offset the benefits of any growth stimulation.
Over the course of the 12 study years, NPK fertiliser corresponding to 15 or 30 kg N ha−1 a−1 was added annually to plots containing 30‐year‐old *Larix decidua* or 32‐year-old *Pinus uncinata* individuals with an understorey of mainly ericaceous dwarf shrubs. To quantify growth, annual shoot increments of trees and dwarf shrubs as well as radial growth increments of trees were measured. Nutrient concentrations in the soil were also measured and the foliar nutritional status of trees and dwarf shrubs was assessed.

 Experimental design

Over an elevation gradient of 140 m across the treeline afforestation site Stillberg, 22 locations were chosen that covered the whole range of microenvironmental conditions (*see* Nutrient addition experimental design.png). Half of the blocks included European larch (*L. decidua*) and the other half included mountain pine (*P. uncinata*). Within each block, three plantation quadrats were randomly selected as experimental plots and each plot was assigned to a control (no fertilisation) or to one of two fertiliser dose treatments (15 kg and 30 kg N ha−1 a−1). Treatments were assigned randomly but confined so that the location of fertilised plots within a block was not directly above control plots to avoid nutrient input from drainage. For details about the experiment, *see* Möhl et al (2019).

 Data description

The available datasets contain climate variables (2004-2016), nutrient isotope measurements (2010 & 2016), shrub growth measurements (2004-2016), soil parameter measurements and annual ring and shoot measurements (2004-2016). All data can be found here:
<https://figshare.com/articles/dataset/Twelve_years_of_low_nutrient_input_stimulates_growth_of_trees_and_dwarf_shrubs_in_the_treeline_ecotone/7025858>

dwarf-shrubs

display_name: dwarf-shrubs

fertilization

display_name: fertilization

nitrogen-isotope

display_name: nitrogen-isotope

stillberg

display_name: stillberg

tree-rings

display_name: tree-rings

treeline

display_name: treeline

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Nutrient addition experiment at the Alpine treeline site Stillberg, Switzerland


maintainer: Jonas Stillhard

en: forest fagus-sylvatica primeval-beech-forest stand-inventory-data forest-structure carpathian-biosphere-reserve forest-dynamics dem long-term-data-sets permanent-forest-plot-data

en: Data description

media_type: application/pdf

en: Available online on publishers website

en: Dataset

en:
In 2000, a permanent forest plot of 10 ha has been established in the core zone of the primeval beech forest of Uholka.
 All living and dead trees with a diameter at breast height (DBH) ≥ 60 mm were identified to species, DBH measured, stems tagged and mapped.
Since then, the plot has been remeasured in 2005, 2010, and 2015. In total, 4,820 individual trees were measured with 14,116 individual measurements throughout all four inventories.
In spring 2018, an Airborne Laser Scan was carried out, covering the Uholka‐Shyrokyi Luh forest. This data set allows us to derive a high‐resolution digital elevation model (DEM) of the plot area.
The data set allows for important insights into the development and the spatial and temporal dynamics of primeval beech forests.

carpathian-biosphere-reserve

display_name: carpathian-biosphere-reserve

dem

display_name: dem

fagus-sylvatica

display_name: fagus-sylvatica

forest

display_name: forest

forest-dynamics

display_name: forest-dynamics

forest-structure

display_name: forest-structure

long-term-data-sets

display_name: long-term-data-sets

permanent-forest-plot-data

display_name: permanent-forest-plot-data

primeval-beech-forest

display_name: primeval-beech-forest

stand-inventory-data

display_name: stand-inventory-data

en: Stand inventory data from the 10‐ha forest research plot in Uholka, Ukraine


en: photovoltaic mountain snow albedo energy irradiance reflection

en: PV Data

en: Windows users use the 7-zip app to extract the zip-file.

en:
 Overview
The SUNWELL Modelling Environment is a combination of data and code that models electricity production from satellite-derived irradiance data and other spatial data sets for all of Switzerland. This ensemble accompanies the publication "The bright side of PV production in snow-covered mountains", published in the Proceedings of the National Academy of Science and reproduces all results and figures of. Code and resources are in their original form (with documentation). A new version with a more generalized application to PV modelling and with more flexibility in terms of input and output formats will be released in the coming months.

 Format
All code is written and has to be executed in Matlab. The input and output data sets are also in the Matlab-specific .mat format. Whenever publicly available, the original data is provided as geotif, .xlsx or other common format.
This is the case for:

- Digital Elevation Model (InputsFromMatlab/MSG/OriginalData/ASTERDEM),
- Landsurface cover type (InputsFromMatlab/MSG/OriginalData/CORINE),
- Population Density (InputsFromMatlab/MSG/OriginalData/popdensRaster,
- Electricity production from three of our validation sites (/Validation/WSL),
- Measured irradiance for two validation sites (/Validation/ASRB)
The ‘Metadata’ documents in the respective folders provide further information about the data sources and processing. Figures are produced either in .pdf or .png format.

 Structure
The central level of the SUNWELL environment holds the 5 Mains, which run the different modelling aspects of the paper; each code is documented separately. Additional code is located in the ‘DataProcessing’ and the ‘functions’ folder. Functions are called in the different Mains.

‘InputsFromMatlab’ contains the radiation and albedo input data sets in separate subfolders (SIS/SISDIR/ALB). The original data is not publicly available, but can be requested for research purposes free of charge. We provide a processed subset of the data set that was used to run the SUNWELL simulations. The MSG subfolder contains additional spatial input data sets.

‘Outputs’ contains the output files from the different mains (matching names, Main_CHallpixels.m  Prod_CHallpixels)

‘Publication_figures’ contains all individual figures from the PNAS publication, as well as the generating code (/code_plot) and the power point figures (/ppts) that provide the combined final figures.

‘Validation’ contains the data sets used in the model validation:

- Electricity production from three of our validation sites (/WSL),
- Measured irradiance for two validation sites (/ASRB)

Electricity production from a validation site at Lac des Toules in Wallis (/LDT), this data set was provided under an NDA and cannot be made publicly available.

Paper Citation:
 > _Annelen Kahl; Jérôme Dujardin; Michael Lehning (2018). Dataset on PV Production in Snow Covered Mountains. PNAS - Proceedings of the National Academy of Sciences. (in press)_

albedo

display_name: albedo

energy

display_name: energy

irradiance

display_name: irradiance

mountain

display_name: mountain

photovoltaic

display_name: photovoltaic

reflection

display_name: reflection

snow

display_name: snow

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal


en: phylogenetic-diversity soil climate functional-diversity ecological-indicator-values grain-size taxonomic-diversity

en: Data access

en:
This dataset comprises a large array of ecological data for the European Alps:

  (1) Current soil and climate predictors at various resolutions.
  (2) GBIF observations of the European Alps Flora (~4,000 species).
  (3) Species habitat suitability maps (1,109 species; based on species observations filtered at 40x40-km)
  at various resolutions used in the study to generate (4); except 'expert'...
  (4) Expert, Taxonomic, phylogenetic and functional diversity of the study region at various resolutions
  (from 100-m to 40-km --> 100-m aggregated & mean to km + non-aggregated/predicted) for CLIM,
  SOIL and CLIM-SOIL models.
  (5) Ecological and altitudinal preferences of the European Alps Flora.
  (6) Data outputs of the related published article.
  (7) All scripts used for analyses.
  (8) Additional files used for analyses.
  (9) Improved set of species habitat suitability maps (~2,600 species; based on species observations
  filtered at 1x1-km) and related taxonomic diversity at 100-m resolution (aggregated to km +
  non-aggregated/predicted) for CLIM, SOIL and CLIM-SOIL models ---> not incorporated in the study.

climate

display_name: climate

ecological-indicator-values

display_name: ecological-indicator-values

functional-diversity

display_name: functional-diversity

grain-size

display_name: grain-size

phylogenetic-diversity

display_name: phylogenetic-diversity

soil

display_name: soil

taxonomic-diversity

display_name: taxonomic-diversity

en: Resolution in species distribution models shapes spatial patterns of plant multifaceted diversity


en: discharge prevah hydrological-simulations precipitation low-flow drought-2018 soil-moisture

en: Discharge

en: Simulated discharge for the 307 medium-sized catchments. The first column provides the date in the format YYYYMMDD. One column corresponds to one catchment. Unit: mm/d.

en: Soil moisture

en: Simulated plant-available soil moisture for the 307 medium-sized catchments. The first column provides the date in the format YYYYMMDD. One column corresponds to one catchment. Unit: mm.

en: Precipitation

en: Simulated precipitation for the 307 medium-sized catchments. The first column provides the date in the format YYYYMMDD. One column corresponds to one catchment. Unit: mm/d.

en: Shapefile of 307 catchments in Switzerland

en: Shapefile of 307 catchments for which simulations of precipitation, discharge, soil moisture, and low flow are provided. The OBJECTID entry corresponds to the data columns in the textfiles of the simulated data provided.

en: Low-flow storage

en: Simulated low-flow storage for the 307 medium-sized catchments. The first column provides the date in the format YYYYMMDD. One column corresponds to one catchment. Unit: mm.

en: The dataset provides simulated 1) precipitation, 2) discharge, 3) soil moisture, and 4) low-flow simulations for 307 medium-sized catchments in Switzerland for the period 1981-2018. The data were simulated using the hydrological model PREVAH in its gridded-version. The simulated time series are provided at daily resolution. A detailed description of the modeling approach can be found in Brunner et al. 2019 submitted to NHESS.

discharge

display_name: discharge

hydrological-simulations

display_name: hydrological-simulations

low-flow

display_name: low-flow

precipitation

display_name: precipitation

prevah

display_name: prevah

soil-moisture

display_name: soil-moisture

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Hydro-meteorological simulations for the period 1981-2018 for Switzerland


radar-wind-profiler-davos-wolfgang

maintainer: Maxim Hervo

title_for_slug: radar-wind-profiler-davos-wolfgang

en: radar wind-direction raclets wind-speed wolfgangpass

en: Radar Wind Profiler Data

en: A Vaisala Lap3000 was installed at Davos Wolfgang to record wind profiles. The time format is number of days fom January 0, 0000 in UTC with a 10 minute resolution.

en: The RADAR wind profiler from Meteoswiss was installed at Davos Wolfgang (LON: 9.853594, LAT: 46.835577) and measured from 2171 m above sea level to 11079 m, with a temporal resolution of 10 minutes.

raclets

display_name: raclets

radar

display_name: radar

wind-direction

display_name: wind-direction

wind-speed

display_name: wind-speed

wolfgangpass

display_name: wolfgangpass

education

en: Education and science

en: EnviDat: the Environmental Data Portal

en: RADAR Wind profiler Davos Wolfgang


en: stream-water spatially-distributed-sampling stable-water-isotopes precipitation geochemical-solutes

en: The dataset contains daily measurements of volumes, isotopes and solutes of stream water as well as precipitation measured several locations; meteorological variables are added. Date: 18.07.2019

en:
This dataset contain measurements of solute and stable water isotopes in stream water and precipitation in the Alp catchment and two of its tributaries (between 2015 -2018) . The river Alp is a snow-dominated catchment situated in Central Switzerland characterized by an elevation range from 840 to 1898 m a.s.l. The dataset provides solutes (major anions and cations, trace metals) and stable water isotopes and water fluxes (precipitation rates, discharge) at daily intervals from several sampling locations.
An updated version of the isotope dataset is available here: https://www.doi.org/10.16904/envidat.242

geochemical-solutes

display_name: geochemical-solutes

spatially-distributed-sampling

display_name: spatially-distributed-sampling

stable-water-isotopes

display_name: stable-water-isotopes

stream-water

display_name: stream-water

en: Daily data of solute and stable water isotopes in stream water and precipitation in the Alp catchment, Central Switzerland


maintainer: Maria Elvira Murazzi

en: nanoplastic uptake polystyrene forest-trees 13c-labelling

en: Nanoplastic in forests experiment

media_type: XLS

en:
Data embargoed until August 2022, and it will be provided upon request

-  excel file containing: two working sheets (leaf supply and root supply experiment) with a table with the values 13C-nanopolystyrene in the different tissues of the two forest tree species; graph showing the differences between controls and treatments of 13C-nanopolystyrene enrichment for each tissue of each forest tree species; ANOVA table showing significant values after having exposed the tree species to 13C-nanopolystyrene

en:
The fate of plastic in the environment is of global concern, because its production recently has
increased strongly and it accumulates in terrestrial and aquatic ecosystems. Although some knowledge on
its role in aquatic and terrestrial ecosystems was gained in the recent decade, hitherto very little is known
about the impact of micro and nanoplastics in forest ecosystems.

The aim of this pioneering project was to explore if nanoplastics are taken up by forest trees species
through leaves or roots. In greenhouse experiments, we exposed leaves or roots of seedling of two forest
trees species to solutions with highly 13C-labelled polystyrene nanoparticles (13C-nPS, 99 atom%) and
examined if they were incorporated in different above- and belowground tissues.

Treated part of the trees for both species showed significant 13C-enrichment, indicating that trees take up nanoparticles. However, the overall 13C signal strength in tissues that were not exposed to the 13C label remained low (Δδ13C<1‰) and was confined to a few seedlings, leaving it ambiguous whether nanoplastic transport occurs or not.

We acknowledge that the new method developed might be not sensitive enough to unequivocally detect
mechanisms of nanoplastic uptake and transport at environmentally realistic concentrations.

forest-trees

display_name: forest-trees

nanoplastic

display_name: nanoplastic

polystyrene

display_name: polystyrene

uptake

display_name: uptake

en: Nanoplastics in forests: Exploring the effects of nanoplastics on forest soils and tree physiology (NanoPlast)


maintainer: Leonie Schönbeck

en: vpd photosynthesis gas-exchange acclimation drought fluorescence pinus-sylvestris

en: Methods fluorescence

en:
Parameters and methodology for Fluorescence measurements

Metadata format from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods light response

en: Methods and parameters for light response curves

en: Methods ACi curves

en:
Parameters and methods for CO2 response curves of Photosynthesis.

Metatdata format by
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Instrument details

en:
Instrument details for all LiCor instruments used during collection of dataset.

Metatdata created following guidelines from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods survey

en: Parameters and methods for point measurements / survey measurements

en: Variable names and units

en: Variable names, description and units for the Pfynwald Gas exchange data

en: Pfynwald gas exchange

en:
Full dataset of Pfynwald gas exchange data taken in the period from June 2013 to October 2020.
All metdata can be found in attached documents.
Data uploaded after quality control using guidelines by Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods diurnal measurements

en:
Parameters and methodology for diurnal measurements

Metadata format from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en:
Gas exchange was measured on control, irrigated and irrigation-stop trees at the irrigation experiment Pfynwald, during the years 2013, 2014, 2016-2020. The measurement campaigns served different purposes, resulting in a large dataset containing survey data, CO2 response curves of photosynthesis, light response curves of photosynthesis, and fluorescence measurements. Measurements were done with LiCor 6400 and LiCor 6800 instruments. Until 2016, measurements were done on excised branches or branches lower in the canopy. From 2016 onwards, measurements were done in the top of the canopy using fixed installed scaffolds.
All metadata can be found in the attached documents.

acclimation

display_name: acclimation

drought

display_name: drought

fluorescence

display_name: fluorescence

gas-exchange

display_name: gas-exchange

photosynthesis

display_name: photosynthesis

pinus-sylvestris

display_name: pinus-sylvestris

vpd

display_name: vpd

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: 2013-2020 gas exchange at Pfynwald


en: dispersal reef-fish biodiversity ecology traits

media_type: R

en: Input for spatial congruence test overlap between proportions of low and high dispersal and observed low- and high- dispersal-related traits in assemblages (30-50% threshold). see Table 2.

en: Global simulated distribution of species under a range of dispersal parameter values

en:
Global distribution of simulated species richness under a range of dispersal parameter values d
d ∈ [1.75°: 5.45°].

en: Functions used in R scripts in: Donati et al. 2019 "A process-based-model supports an association between  # dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019

en: Functions for Figures illustrated in Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019.

en: Coral reef grid cells (shape, dbf, etc. files)

en:
Grid cells of 5 × 5°, corresponding to circa 555 × 555 km at the Equator (see Parravicini et al. 2013, Leprieur et al. 2016)

Parravicini, V. et al. 2013. Global patterns and predictors of tropi- cal reef sh species richness. – Ecography 36: 1254–1262.

Leprieur, F. et al. 2016. Plate tectonics drive tropical reef biodiver- sity dynamics. – Nat. Commun. 7: 11461.

en: Global species distribution of tropical reef fish species

media_type: text/csv

en: Each species corresponds to a "Gaspar_code" gathered from the General Approach to Species Abundance Relationships (GASPAR) database (Kulbicki et al. 2013, Parravicini et al. 2013) and is linked to a specific Fishned ID corresponding to a specific Latitude and Longitude.

media_type: rds

en: Simulated rates of speciation and extinction under a range of dispersal parameters. Net diversification rates are calculated from the difference between speciation and extinction rates. This data allows the creation of Figure A4 in Supporting information, Appendix 1.

en: Tropical reef fish trait data

en:
Species trait (i.e. adult body size, home range mobility behaviour, circadian activity and schooling) data gathered from the General Approach to Species Abundance Relationships (GASPAR) database (Kulbicki et al. 2013, Parravicini et al. 2013).

Kulbicki, M. et al. 2013. Global biogeography of reef shes: a hier- archical quantitative delineation of regions. – PLoS One 8: e81847.

Parravicini, V. et al. 2013. Global patterns and predictors of tropi- cal reef sh species richness. – Ecography 36: 1254–1262.

To complement the trait data with Pelagic Larval Duration information refer to the following publication:

Luiz, Osmar J., et al. "Adult and larval traits as determinants of geographic range size among tropical reef fishes." Proceedings of the National Academy of Sciences 110.41 (2013): 16498-16502.

In Donati et al. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography in August 2019, we used the PLD gathered from Luiz et al. 2013 as described in the methods - section "Species trait data".

en: Donati et al. main script

en:
Main script used in : Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages"
accepted in Ecography, August 2019

en: Input for the Global distribution maps for proportions of species richness for (a) simulated dispersal parameter value (b) observed dispersal-related traits

en: Geographic distribution data (species richness and proportions of high/low dispersal-related traits) on predominantly low dispersing and high dispersing species expected based on the simulations, and those where low- and high- dispersal related traits values are observed for the five investigated traits.

en: Dispersal parameter value d per simulation starting with a minimum dispersal value, where each species is able to colonise each adjacent cell, and ending with the value of d for which all the extant habitats, including the most remote Pacific islands, have been colonised (d ∈ [1.75°: 5.45°]).

en: Global coast files from https://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html used in the Figures

en: Supplementary material Appendix 1 Figures illustrated in Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages". accepted in Ecography, August 2019

en: Main text figures

en: R Script used for figures in main text in: Donati et al. 2019: "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019.

en:
This dataset contains all data and R codes (R Development Core Team, https://www.R-project.org) used in the following publication: Donati GFA, Parravicini V, Leprieur F, Hagen O, Gaboriau T, Heine C, Kulbicki M, Rolland J, Salamin N, Albouy C, Pellissier L. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted by Ecography in August 2019. When using this data and R scripts the above publication should be cited.

The interaction of habitat dynamics with species dispersal abilities could generate gradients
in species diversity and prevalence of life-history and ecological traits, when the latter are associated with dispersal potential. In this dataset, we use a spatial mechanistic model of speciation, extinction and dispersal, constrained by a dispersal parameter. This model allows to simulate the interplay between reef habitat dynamics over the past 140 million years and dispersal, shaping lineage diversification history and global assemblage composition of over 6000 tropical reef fish species. Global trait distribution data of tropical reef fish are used to evaluate the congruence between simulations and observations.

biodiversity

display_name: biodiversity

dispersal

display_name: dispersal

ecology

display_name: ecology

reef-fish

display_name: reef-fish

traits

display_name: traits

education

en: Education and science

en: EnviDat: the Environmental Data Portal

en: Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide


maintainer: Albrecht von Boetticher

en: debris-flow hangmuren murgang interfoam dberisintermixing barrier-impact-simulation shallow-landslide natural-hazard finite-volumes

en: Installation Instructions for debrisInterMixing-6

en: These are the installation instructions for debrisInterMixing4

en: debrisInterMixing for OF-Version 6

en:
This version of debrisInterMixing is based on OpenFOAM Version 4.x and was tested on Ubuntu 18.04.1 LTS.
Please follow the instructions given in ReadMe_debrisInterMixing4.pdf for installation.

en:
Here the updated versions of debrisInterMixing are provided for download. The first OpenFoam-compatible Version 2.3.x are available as supplement to v. Boetticher, A., Turowski, J. M., McArdell,W. B., Rickenmann, D., Hürlimann, M., Scheidl, C., and Kirchner, J. W.: DebrisInterMixing-2.3: A Finite Volume solver for three dimensional debris flow simulations based on two calibration parameters. Part two: model validation with experiments. Geoscientific Model Development, 10, 11: 3963-3978. doi: 10.5194/gmd-10-3963-2017.
DebrisInterMixing is a Volume-of-Fluid based Finite Volume code that accounts for shear-thinning sensitive shares of fine sediment suspension together with pressure-sensitive components of the gravel grains within debris flow mixtures. All model properties can be derived from a material sample except for a grid-sensitive calibration parameter.
For more information, please contact albrecht.vonboetticher@wasserbau.ch.

barrier-impact-simulation

display_name: barrier-impact-simulation

dberisintermixing

display_name: dberisintermixing

debris-flow

display_name: debris-flow

finite-volumes

display_name: finite-volumes

hangmuren

display_name: hangmuren

interfoam

display_name: interfoam

murgang

display_name: murgang

natural-hazard

display_name: natural-hazard

shallow-landslide

display_name: shallow-landslide

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Three-dimensional debris flow simulation tool debrisInterMixing


maintainer: James W. Kirchner

en: diel-cycle streamflow snowmelt ecohydrology sap-flow groundwater diurnal-cycle evapotranspiration

en: Subcatchment polygons

en: Subcatchment polygons for use in the Google Earth Engine scripts.

en: Metadata

en: Column descriptions for both data files, and map coordinates for all measurement locations.

en: MODIS NDSI script

en: Google Earth Engine script for computing MODIS normalized difference snow index (NDSI) values and averaging them over subcatchment areas.

en: MODIS EVI2 script

en: Google Earth Engine script for computing MODIS two-band enhanced vegetation index (EVI2) values and averaging them over subcatchments.

en: Daily time series

en: Daily hydrometeorological and ecohydrological time series

en: 30-minute time series

en: 30-minute hydrometeorological and ecohydrological time series.

en:
Hydrometerological and ecohydrological time series from Sagehen Creek and Independence Creek, Sierra Nevada, USA, illustrating hydrological responses to daily cycles in snowmelt and evapotranspiration forcing.

Data include 30-minute time series of

- weather variables,

- sap flow fluxes,

- groundwater levels (in two riparian transects of shallow groundwater wells),

- and stream stages (at 12 sites spanning a 500-meter elevation gradient),

and daily time series of

- temperature, precipitation, and snow water equivalent at three nearby snow telemetry stations

- diel cycle index values for groundwater levels and stream stages,

- and MODIS normalized difference snow index (NDSI) and enhanced vegetation index (EVI2) values averaged over selected subcatchments.

Google Earth Engine scripts for extracting the MODIS data are also provided.

diel-cycle

display_name: diel-cycle

diurnal-cycle

display_name: diurnal-cycle

ecohydrology

display_name: ecohydrology

evapotranspiration

display_name: evapotranspiration

groundwater

display_name: groundwater

sap-flow

display_name: sap-flow

snowmelt

display_name: snowmelt

streamflow

display_name: streamflow

en: Daily cycles in solar flux, snowmelt, transpiration, groundwater, and streamflow at Sagehen and Independence Creeks, Sierra Nevada, USA


en: model mars erosion snow sediment-transport

en: Datasets of Figure 4a

en: Datasets of Figure 2

en: Datasets of Figure 4b

en: Datasets of Figure 3a

en: Datasets of Figure 3b

en:
The files contain the datasets used to produce Figures 2, 3, and 4 of the manuscript ([doi: 10.1002/2016GL071822](http://dx.doi.org/10.1002/2016GL071822)).

 Manuscript Abstract:
Despite being the main sediment entrainment mechanism in aeolian transport, granular splash is still poorly understood. We provide a deeper insight into the dynamics of sand and snow ejection with a stochastic model derived from the energy and momentum conservation laws. Our analysis highlights that the ejection regime of uniform sand is inherently different from that of heterogeneous sand. Moreover, we show that cohesive snow presents a mixed ejection regime, statistically controlled either by energy or momentum conservation depending on the impact velocity. The proposed formulation can provide a solid base for granular splash simulations in saltation models, leading to more reliable assessments of aeolian transport on Earth and Mars.

erosion

display_name: erosion

mars

display_name: mars

model

display_name: model

sediment-transport

display_name: sediment-transport

snow

display_name: snow

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Energy- and momentum-conserving model of splash entrainment in sand and snow saltation


maintainer: Anita C. Risch

en: worldwide nutrient-network soil-biology soil-chemistry mineralization global soil grassland

en:
site.code: Site code

Continent: Continent

sampleID: Sample ID

nn.latitude: Lattitude

nn.longitude: Longitude

bioclim.T.ann: Mean annual temperature (°C)

bioclim.T.var: Temperature variability (°C)

bioclim.T.q.wet: Temperature of the wettest quarter (°C)

bioclim.T.q.dry: Temperature of the driest quarter (°C)

bioclim.T.q.warm: Temperature of the warmest quarter (°C)

bioclim.P.ann: Mean annual preciptiation (mm)

bioclim.P.q.wet: Precipitation of the wettest quarter (mm)

ch.pH: pH

ch.WSK.vol: Water holding capacity (vol%)

ch.bulkdensity.gcm3: Bulk density (g cm-3)

ch.porespace: Pore space (vol%)

ch.sand.perc: Soil texture: sand (%)

ch.silt.perc: Soil texture: silt (%)

ch.clay.perc: Soil texture: clay (%)

ch.NO3start.mgg: NO3 at the beginning of the incubation (mgkg)

ch.Ntot.perc: Total soil N (%)

ch.Ctot.perc: Total soil C (%)

ch.Corg.perc: Soil organic C (%)

ch.netNminfield.mgkgd: Realised soil net N mineralisation (mg kg-1 d-1)

ch.netNminlab.mgkgd: Potential soil ne N mineralisation (mg kg-1 d-1)

archaea.cpg.log: Ammonia oxidising archaea (archaeal amoA gene copies g-1 soil)

bacteria.cpg.log: Ammonia oxidising bacteria (bacterial amoA gene copies g-1 soil)

micr.biom: Microbial biomass (ug g-1 soil)

ch.CtoN: C to N ratio

ch.netNnitriffield.mgkgd.sqrt: Realised soil net nitrification, transformed (mg kg-1 d-1)

ch.netNammoniffield.mgkgd.sqrt: Realised soil net ammonification, transformed (mg kg-1 d-1)

ch.netNnitriflab.mgkgd.sqrt: Potential soil net nitrification, transformed (mg kg-1 d-1)

ch.netNammoniflab.mgkgd.sqrt: Potential soil net ammonifiation, transformed (mg kg-1 d-1)

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch, A. C.; Zimmermann, S.; Ochoa-Hueso, R.; Schütz, M.; Frey, B.; Firn, J. L.; Fay, P. A.; Hagedorn, F.; Borer, E. T.; Seabloom, E. W.; et al. Soil net nitrogen mineralisation across global grasslands. Nat. Commun. 2019, 10 (1), 4981 (10 pp.). doi.org/10.1038/s41467-019-12948-2

Please cite this paper together with the citation for the datafile.

We conducted coordinated measurements of realised and potential soil net Nmin, and assessed water holding capacity, bulk density, C and N content, texture, pH, pore space, microbial biomass, and archaeal (AOA) and bacterial (AOB) ammonia oxidiser abundance using identical materials and methods across 30 grasslands on six continents. The sites covered a globally relevant range of climatic and edaphic conditions. Climate data was obtained from worldclim - Global climate data https://www.worldclim.org/

global

display_name: global

grassland

display_name: grassland

mineralization

display_name: mineralization

nutrient-network

display_name: nutrient-network

soil

display_name: soil

soil-biology

display_name: soil-biology

soil-chemistry

display_name: soil-chemistry

worldwide

display_name: worldwide


weissfluhjoch-dataset-for-esm-snowmip

maintainer: Nander Wever

title_for_slug: weissfluhjoch-dataset-for-esm-snowmip

en: snow-depth snow-models snow weissfluhjoch esm-snowmip

en: Dataset Weissfluhjoch for ESM-SnowMIP

en: Conversion script

media_type: text/x-sh

en:
Use this script to convert WFJ_optimaldataset_v6.smet to wfj.smet, the file that is used for the ESM-SnowMIP project. It also requires the file: WFJ_AirPressure_Data.zip

Use: bash create_wfj_dataset.sh > input/wfj.smet

mimetype: text/x-sh

en: ini file

en: This ini file is required by data-converter from MeteoIO version 1887 (http://models.slf.ch/p/meteoio/)

en: This Weissfluhjoch dataset is a processed version of the Weissfluhjoch dataset version 6 from https://doi.org/10.16904/6. This dataset was specially created for the ESM-SnowMIP project. Here it is documented how this dataset has been created.

esm-snowmip

display_name: esm-snowmip

snow-depth

display_name: snow-depth

snow-models

display_name: snow-models

weissfluhjoch

display_name: weissfluhjoch

en: Weissfluhjoch dataset for ESM-SnowMIP


maintainer: Franziska Koch

en: gps liquid-water-content snow-cover snow snow-depth

en: Read-me

en: The read-me file contains the description of the data provided.

en: Dataset with GPS-derived snow cover properties and validation data

en: This file includes the data as described in the Read-me file.

en:
This data set includes GPS-derived snow water equivalent (SWE), snow depth (HS) and liquid water content (LWC) data for three entire snow-covered seasons (2015-2016, 2016-2017, 2017-2018) at the study plot Weissfluhjoch 2540 m a.s.l. (Davos, Switzerland). The procedure to derive these snow properties is described in Koch et al. (2019). The novel approach is based on a combination of GPS signal attenuation and time delay.

The dataset also includes corresponding validation data for SWE and HS measured at Weissfluhjoch, and some additional meteorological data used for interpretation of the snow cover evolution.

Please refer to the Read-me file for further details on the data.

These data are the basis of the following publication:
> Koch, F., Henkel, P., Appel, F., Schmid, L., Bach, H., Lamm, M., Prasch, M., Schweizer, J., and Mauser, W., 2019. Retrieval of snow water equivalent, liquid water content and snow height of dry and wet snow by combining GPS signal attenuation and time delay. Water Resources Research, 55(5), 4465-4487. https://doi.org/10.1029/2018WR024431

gps

display_name: gps

liquid-water-content

display_name: liquid-water-content

snow-cover

display_name: snow-cover

en: GPS-derived data of SWE, HS and LWC and corresponding validation data


maintainer: Andrin Caviezel

en: deposition-points dem rockfall-runout sensor-stream stonenode stonenodedata natural-hazards induced-rockfall rockfall-experiments rockfall

en: StoneNode v1.0 Data for equipped experimental Runs.

en: Corresponding StoneNode v1.0 data streams belonging to the deposition points.

en: Induced Rockfall Data, Tschamut, GR

en:
 Induced Rockfall Experimental Data, Tschamut, GR, Switzerland

The archive contains site specific geographical data as well as the deposition points of manually induced rockfall by releasing differently shaped boulders with 30–80 kg of mass. Additionally availabe are the StoneNode v1.0 sensor streams for the equipped rocks.

The _OverviewFigures_ file serves as quick representation of the included data. It also contains the overview table for the rock masses in order to set the dimensions accordingly in RAMMS::ROCKFALL.

The archive contains the following folders:
<\ul>
* DEM: ArcGIS compatible DEM Tschamut_DEM_2m (grid resolution of 2 m) as well as the .asc grid used in RAMMS::ROCKFALL simulations
* _DepositionPoints_: containing two folders _RF Tschamut Frozen_ and _RF Tschamut WET_ containing each a shapefile with the complete deposition data of each series as well as deposition shapfiles for each rock shape.
* _DigitizedRocks_: Digitized point clouds of the used rocks as used for RAMMS::ROCKFALL simulations (.pts files) (dimensions have to be checked).
* _Orthofoto_: Orthophoto of the experimental site obtained via UAV with 5 cm resolution.

en:
 Dataset of an experimental campaign of induced rockfall in Tschamut, Grisons, Switzerland.

The data archive contains site specific geographical data such as DEM and orthophoto as well as the deposition points of manually induced rockfall by releasing differently shaped boulders with 30–80 kg of mass. Additionally available are all the StoneNode data streams for rocks equipped with a sensor. The data set consists of

* Deposition points from two series (wet (27/10/2016) and frozen (08/12/2016) ground)
* Digital Elevation Model (grid resolution 2 m) obtained via UAV
* Orthophoto (5 cm resolution) obtained via UAV
* Digitized rock point clouds (.pts input files for RAMMS::ROCKFALL)
* StoneNode v1.0 raw data stream for equipped rocks.

Further information is found in

* A. Caviezel et al., _Design and Evaluation of a Low-Power Sensor Device for Induced Rockfall Experiments_, IEEE Transactions on Instrumentation and Measurement, 2018, 67, 767-779, http://ieeexplore.ieee.org/document/8122020/
* P. Niklaus et al., _StoneNode: A low-power sensor device for induced rockfall experiments_, 2017 IEEE Sensors Applications Symposium (SAS), 2017, 1-6, http://ieeexplore.ieee.org/document/7894081/

dem

display_name: dem

deposition-points

display_name: deposition-points

induced-rockfall

display_name: induced-rockfall

natural-hazards

display_name: natural-hazards

rockfall

display_name: rockfall

rockfall-experiments

display_name: rockfall-experiments

rockfall-runout

display_name: rockfall-runout

sensor-stream

display_name: sensor-stream

stonenode

display_name: stonenode

stonenodedata

display_name: stonenodedata

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Induced Rockfall Dataset (Small Rock Experimental Campaign), Tschamut, Grisons, Switzerland


en: shortwave-radiation radiation weisfluhjoch davos longwave-radiation

en: Processing doc

en: Description of processing code that was ported to R by P. Frei (2016).

en: Metadata

en: DATA ACCESS

media_type: SMET

en: ASRB radiation station at the Weissfluhjoch versuchsfeld.

en: Parameter file

en: Description of ASRB parameters.

en:
Incoming and outgoing shortwave and longwave 2 min radiation measurements at the Weissfluhjoch research site, Davos, CH. The experimental site at the Weissfluhjoch (WFJ, 46.83 N, 9.81 E) is located at an altitude of 2540 m in the Swiss Alps near Davos. During the winter months, almost all precipitation falls as snow at this altitude. As a consequence, a continuous seasonal snow cover builds up every winter, with a maximum snow height ranging from 153–366 cm over the period 1934–2012. The measurement site is located in an almost flat part of a southeast oriented slope.

 References
1. Marty, C., Philipona, R., Frohlich, C., Ohmura, A.. Altitude dependence of surface radiation fluxes and cloud forcing in the alps: results from the alpine surface radiation budget network. 2002. Theoretical and Applied Climatology. Volume 72. Issue 3-4. 137-155. http://dx.doi.org/10.1007/s007040200019. 10.1007/s007040200019.
2. Christoph Marty. Surface Radiation, Cloud Forcing and Greenhouse Effect in the Alps. 2000. Institute fuer Klimaforschung ETH. Zuercher Klima-Schriften. Volume 79. http://e-collection.library.ethz.ch/eserv/eth:23491/eth-23491-01.pdf.

davos

display_name: davos

longwave-radiation

display_name: longwave-radiation

radiation

display_name: radiation

shortwave-radiation

display_name: shortwave-radiation

weisfluhjoch

display_name: weisfluhjoch

en: ASRB_WFJVF: Shortwave and longwave radiation measurements (2 min) at the Weissfluhjoch research site, Davos


en: soil-properties microbial-biomass-carbon climate anthropogenic-management nutrient-addition herbivore-exclusion microbial-respiration

en: Risch et al. GEB_data.xlsx

media_type: .xlsx

en:
Study sites and experimental design
We collected data from 23 sites that are part of the Nutrient Network Global Research Cooperative (NutNet, https://nutnet.umn.edu/). The mean annual air temperature (MAT) across these sites ranged from -4 to 22°C, mean annual precipitation (MAP) from 252 to 1592 mm, and elevations from 6 to 4261 m above sea level (Fig 1a, Supplementary Table S1), hence cover a wide range of climatic conditions under which grasslands occur (Fig 1b). Soil organic C concentrations ranged between 0.8 to 7.8%, soil total N concentrations between 0.1 and 0.6%, and the soil C:N ratio between 9.1 and 21.5. Soil clay content spanned from 3.0 to 35%, and soil pH from 3.4 to 7.6 (Supplementary Table S2).
At each site, the effects of nutrient addition and herbivore exclusion were tested via a randomized-block design (Borer et al., 2014). Three blocks with 10 treatment plots each were established at each site, except for the site at bldr.us (only two blocks). Each of these 10 plots was randomly assigned to a nutrient or fencing treatment. An individual plot was 5 x 5 m, divided into four 2.5 x 2.5 m subplots. Each subplot was further divided into four 1 x 1 m square sampling plots, one of which was set aside for soil sampling (Borer et al., 2014). Plots were separated by at least 1 m wide walkways. We collected soil samples from four different treatments for this study: (i) untreated control plots (Control), (ii) herbivore exclusion plots (Fence), (iii) plots fertilized with N, P, K, plus nine essential macro and micronutrients (NPK), and (iv) plots with simultaneous fertilizer addition and herbivore exclusion (NPK+Fence). The experiments were established at different times in the past, with years of treatment different among sites (2 – 9 years since start of treatment; Supplementary Table S1). For the nutrient additions, all sites applied 10 g N m-2 each year as time-release urea; 10 g P m-2 yr-1 as triple-super phosphate; 10 g K m-2 yr-1 as potassium sulfate. A micro-nutrient mix (Fe, S, Mg, Mn, Cu, Zn, B, Mo, Ca) was applied at 100 g m-2 together with K in the first year of treatments but not thereafter.
We excluded large vertebrate herbivores (Fence) by fencing two plots, one with and one without NPK additions, within each block. The fences excluded all aboveground mammalian herbivores with a body mass of over 50 g (Borer et al., 2014). At most sites, the fences were 180 cm high, and the fence contained a wire mesh (1 cm holes) for the bottom 90 cm with a 30 cm outward-facing flange stapled to the ground to exclude burrowing animals. Climbing and subterranean animals may potentially still access these plots (Borer et al., 2014). For slight modifications in fence design at a few sites see Supplementary Table S3. Most sites only had wild herbivores, although four sites were also grazed by domestic animals (Supplementary Table S1).

Collection of soil samples, soil microbial respiration, microbial biomass, and other soil properties
Each of the 23 sites received a package containing identical material from the Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Switzerland to be used for sampling (Risch et al., 2015; Risch et al., 2019). We collected two soil cores of 5 cm diameter and 12 cm depth in each sampling plot and composited them to measure MR, MBC, and soil chemical properties (see below). An additional sample (5 x 12 cm) was collected to assess soil physical properties. This sample remained within a steel sampling core after collection and both ends were tightly closed with plastic caps to avoid disturbance. All soils were shipped cooled to the laboratory at (Location will be disclosed after manuscript acceptance) within a few days after collection. Soils were sampled roughly 6 weeks prior to peak biomass at each site during 2015 and 2016.
To assess MR (CO2 production) in a laboratory incubation experiment we weighed duplicate soil samples (8 g dry soil equivalent) into 50-ml Falcon tubes. No additional substrate (glucose, sugar) was added to these samples. We adjusted the soil moisture of each sample to 60% field capacity. We then placed a 15 ml plastic test tube (Semadeni 1701A) containing 7.25 ml 0.05 M NaOH over each soil sample. The test tube was fixed with a plastic rod so that it was not in contact with the soil sample. The Falcon tubes were then sealed with a screw cap and placed in an incubator under completely dark conditions at 20°C. The CO2 produced by microbial respiration was absorbed by the 0.05 M NaOH. For five weeks we measured the decrease in conductivity within the 0.05 M NaOH solution on a weekly basis with a Multimeter WTW Multi 3410 (WTW GmbH, Germany) and replaced the 0.05 M NaOH with fresh solution. We included Falcon tubes without soil samples in each incubation run as blanks to test if tubes were tight and no CO2 could enter or escape. We calibrated the relationship between conductivity reduction and NaOH absorbed as follows: 400 ml 0.05 M NaOH was placed in a beaker and its conductivity was measured with the multimeter. While stirring, air containing CO2 was blown into the solution for approximately one minute, which reacts with NaOH to form Na2CO3. After this process, conductivity was measured again. We then transferred 7.25 ml of the solution into a smaller beaker and added 1 ml of 0.1 M BaCl2 to precipitate Na2CO3 and then titrated the solution with 0.05 M HCl to determine the remaining NaOH. We then repeated these steps with the remaining solution a total of nine times and plotted the conductivities (y-axis) against the NaOH consumed (x-axis, Supplementary Fig S1). This regression line was used to infer the consumption of NaOH from the conductivity reduction in the incubation experiments and to calculate CO2 evolution during incubation. In addition, we determined the optimum concentration for the NaOH solution in series of preliminary experiments, so that the concentration was not too high to become insensitive, but also not too low so that not all NaOH reacts during incubation. We then calculated MR (mg CO2-C kg dry soil-1 h-1) as total amount of CO2 released over the 5 weeks divided by the duration of the entire incubation in hrs.
Soil microbial biomass carbon (MBC; mg C kg soil-1 ) was measured at the beginning of the experiment by measuring the maximal respiratory response to the addition of glucose solution (4 mg glucose per g soil dry weight dissolved in distilled water; substrate-induced respiration method) on approximately 5.5 g of soil (J. P. E. Anderson & Domsch, 1978; Nico Eisenhauer et al., 2018; Scheu, 1992). For this purpose we used an O2-micro-compensation apparatus (Scheu, 1992). More specifically, substrate-induced respiration was calculated from the respiratory response to D-glucose for 10 hr at 20°C. Glucose was added according to preliminary studies to saturate the catabolic enzymes of microorganisms (4 mg g soil-1 dissolved in 400 ml deionized water). The mean of the lowest three readings within the first 10 hrs (between the initial peak caused by disturbing the soil and the peak caused by microbial growth) was taken as maximum initial respiratory response (MIRR; ml O2 kg soil-1 h-1) and microbial biomass (mg C kg soil-1) was calculated as 38 x MIRR (Beck et al., 1997; Cesarz et al., 2022; Thakur et al., 2015).
The rest of the composited sample was dried at 65°C for 48 h, ground and sieved (2 mm mesh) to assess the soil pH, mineral soil total C and N and C:N ratio, and mineral soil organic C (Risch et al., 2019). The undisturbed sample was used to assess water holding capacity (WHC), bulk density (BD), and soil texture [sand, silt, clay; methods in (Risch et al., 2019)]. We used the percentage of sand and clay as an indicator of soil texture in this study. MAT (°C), MAP (mm) and temperature of the wettest quarter (°C) were obtained from www.worldclim.com (Fick & Hijmans, 2017; Hijmans, Cameron, Parra, Jones, & Jarvis, 2005). These variables were selected as they were found to be drivers of soil nutrient processes across these sites in earlier studies (Risch et al., 2020; Risch et al., 2019). Mean annual soil temperatures (MAST; °C) for the 0 to 5 cm soil layer were obtained for each site from the SoilTemp maps (J. Lembrechts et al., 2021; J. J. Lembrechts et al., 2022), global gridded modelled products of soil bioclimatic variables for the 1979-2013 period at a 1-km² resolution, based on CHELSA, ERA5 and in-situ soil temperature measurements.
Numerical calculations and statistical analyses
We calculated MMQ as MR/MBC. We corrected this measure using the average soil temperature of each site (MMQsoil). This temperature correction is necessary as incubation temperatures are usually much higher than site mean annual soil temperatures (see Xu et al. 2017). MMQsoil = MMQ x Q10(MAST – 20)/10, where Q10 was assumed to be 2 (Xu et al. 2017). See Supplementary Fig S2 for comparison of air and soil temperatures across the 23 sites as well as the incubation temperature.
Some of the explanatory variables (clay, soil organic C, C:N ratio) were skewed and were thus log-transformed prior to analyses. All continuous explanatory variables were centred and scaled to have a mean of zero and variance of one. To avoid collinearity between them we filtered them using correlation analysis (Supplementary Fig S3). From the variables that were strongly correlated (Pearson’s |r| > 0.70) (Dormann et al., 2013), we selected the ones that allowed us to minimize the number of variables (Supplementary Fig S3). Specifically, soil total N concentration, soil total C concentration, soil sand content and soil bulk density were dropped from the dataset. We then assessed how these edaphoclimatic variables are related to MMQ across our global grasslands.
For this, we used linear mixed effects models (LMMs) fitted by maximum likelihood with the lme function in the nlme package (version 3.1-153) (Pinheiro, Bates, DebRoy, & Sarkar, 2021) in R version 3.6.3. (R Core Team, 2019). We used treatment as a fixed effect and plot nested in site as random effects to assess treatment differences in MMQsoil, as well as MR, and MBC. The number of years since the treatment started was included as a fixed effect in all the initial models but was not significant and therefore not retained in the models. To assess how differences in MMQsoil were affected by environmental factors (soil, climatic properties) we again used LMMs. Soil and climatic properties were included as fixed effects and plot nested in site as random effects. We did not include interactions between environmental variables. We then used the MuMin package (Barton, 2018) (version 1.42.1) to select the best models that explained the most variation based on Akaike’s information criterion (AIC; model.avg function). We used the corrected AIC (AICc) to account for our small sample size and selected the top models that fell within 4 AICc units (delta AICc < 4) (Burnham & Anderson, 2002; Johnson & Omland, 2004). We present all our top models rather than model averages. Conditional averages are provided in the Supplementary material.
Based on findings from analyses described above and the literature, we developed a conceptual model of direct and indirect relationships between both edaphoclimatic variables and experimental treatments (Supplement Figure S4) to obtain a more holistic approach in understanding how these properties affect MMQsoil. We had data from 23 sites with 272 observations. We tested this model using structural equation modelling based on a d-sep approach (Lefcheck, 2016; Shipley, 2009). We considered those environmental drivers that were included in our top LMMs, namely temperature of the wettest quarter (T.q.wet), soil pH, water holding capacity (WHC) and soil organic C (organic C; Supplementary Figure S4). These factors were allowed to directly affect MMQsoil, and via their interactions with treatments. In addition, treatments were allowed to directly affect MMQsoil. Treatments were included as dummy variables in the model. We tested our conceptual model (Supplementary Fig S4) using the piecewiseSEM package (version 2.0.2; Lefcheck, 2016) in R 3.4.0, in which a structured set of linear models are fitted individually. This approach allowed us to account for the nested experimental design, and overcome some of the limitations of standard structural equation models, such as small sample sizes (Lefcheck, 2016; Shipley, 2009). We used the lme function of the nlme package to model response variables, including site as a random factor. Good fit of the SEM was assumed when Fisher’s C values were non-significant (p > 0.05). For all significant interactions between soil or climate variables and treatments detected in the SEMs, we calculated treatment effect sizes, i.e., the differences in MMQsoil between Control and treatments as log response ratios (LRR) and plotted these values against the climate or soil factors. The LRR were defined as log(Control/Treatment), where treatment was either Fence, NPK or NPK+Fence. To assess which of the LRR-climate or soil property relationships were significant we again used LMMs, in which soil and climatic properties were included as fixed effects and plot nested in site as random effects.

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch Anita C., Zimmermann, Stefan, Schütz, Martin, Borer, Elizabeth T., Broadbent, Arthur A.D., Caldeira, Maria C., Davies, Kendi F., Eisenhauer, Nico, Eskelinen, Anu, Fay, Philip A., Hagedorn, Frank, Knops, Johannes M.H., Lembrechts, Jonas, J., MacDougall, Andrew S., McCulley, Rebecca L., Melbourne, Brett A., Moore, Joslin L., Power, Sally A., Seabloom, Eric W., Silveira, Maria L., Virtanen, Risto, Yahdjian, Laura, Ochoa-Hueso, Raul (accepted). Drivers of the microbial metabolic quotient across global grasslands. Global Ecology and Biogeography

Please cite this paper together with the citation for the datafile.

The microbial metabolic quotient (MMQ; mg CO2-C mg MBC-1 h-1), defined as the amount of microbial CO2 respired (MR; mg CO2-C kg soil-1 h-1) per unit of microbial biomass C (MBC; mg C kg soil-1), is a key parameter for understanding the microbial regulation of the carbon (C) cycle, including soil C sequestration. Here, we experimentally tested hypotheses about the individual and interactive effects of multiple nutrient addition (NPK+micronutrients) and herbivore exclusion on MR, MBC, and MMQ across 23 sites (5 continents). Our sites encompassed a wide range of edaphoclimatic conditions, thus we assessed which edaphoclimatic variables affected MMQ the most and how they interacted with our treatments. Soils were collected in plots with established experimental treatments. MR was assessed in a five-week laboratory incubation without glucose addition, MBC via substrate-induced respiration. MMQ was calculated as MR/MBC and corrected for soil temperatures (MMQsoil). Using LMMs and SEMs, we analysed how edaphoclimatic characteristics and treatments interactively affected MMQsoil. MMQsoil was higher in locations with higher mean annual temperature, lower water holding capacity, and soil organic C concentration, but did not respond to our treatments across sites as neither MR nor MBC changed. We attributed this relative homeostasis to our treatments to the modulating influence of edaphoclimatic variables. For example, herbivore exclusion, regardless of fertilization, led to greater MMQsoil only at sites with lower soil organic C (<1.7%). Our results pinpoint the main variables related to MMQsoil across grasslands and emphasize the importance of the local edaphoclimatic conditions in controlling the response of the C cycle to anthropogenic stressors. By testing hypotheses about MMQsoil across global edaphoclimatic gradients, this work also helps to align the conflicting results of prior studies.

anthropogenic-management

display_name: anthropogenic-management

climate

display_name: climate

herbivore-exclusion

display_name: herbivore-exclusion

microbial-biomass-carbon

display_name: microbial-biomass-carbon

microbial-respiration

display_name: microbial-respiration

nutrient-addition

display_name: nutrient-addition

soil-properties

display_name: soil-properties


rorcc

maintainer: Tobias Wechsler

title_for_slug: rorcc

en: environmental-flow climate-change hydropower design-discharge run-of-river-power-plants

en: RoRCC

en:
The dataset “RoRCC” consists of simulation-based results on climate change impacts on Alpine RoR power production; it is based on 21 Swiss RoR power plants, with a total production of 5.9 TWh a-1. The dataset contains the following information:
-	metadata on the RoR power plants under consideration
-	annual and seasonal production scenarios differentiated into three emission scenarios (RCP2.6, RCP4.5, RCP8.5) and three future periods (T1: 2020–2049, T2: 2045–2074, T3: 2070–2099)
-	annual and seasonal production loss due to environmental flow requirements
-	annual and seasonal the technical increase potential (via design discharge optimisation)
-	annual and seasonal changes in the hydrological cycle for the three emission scenarios (RCP2.6, RCP4.5, RCP8.5) and three future periods (T1: 2020–2049, T2: 2045–2074, T3: 2070–2099)

en:
The dataset "RoRCC" consists of simulation-based results on climate change impacts on Alpine RoR power production; it is based on 21 Swiss RoR power plants, with a total production of 5.9 TWh a-1. The dataset contains the following information:
1) metadata on the RoR power plants under consideration, 2) annual and seasonal production potential scenarios under into three emission scenarios (RCP2.6, RCP4.5, RCP8.5) and three future periods (T1: 2020–2049, T2: 2045–2074, T3: 2070–2099), 3) annual and seasonal streamflow scenarios, 4) annual and seasonal production loss due to environmental flow requirements, 5) annual and seasonal the technical increase potential (via design discharge optimisation) and 6) annual and seasonal changes in the hydrological cycle.

climate-change

display_name: climate-change

design-discharge

display_name: design-discharge

environmental-flow

display_name: environmental-flow

hydropower

display_name: hydropower

run-of-river-power-plants

display_name: run-of-river-power-plants

education

en: Education and science

envidat

en: EnviDat: the Environmental Data Portal