maintainer: Anita Risch

en: invertebrates grazing exclusion subalpine ecosystem-functions ecosystem-multifunctionality grassland ecosystem-coupling swiss-national-park vertebrates

en: Datafile

en:
ID: Plot ID composited of Fence & Treatment number (90 plots total)

Grassland: Name of the six subalpine grasslands where the exclosure setups were erected. In large grasslands (GRIM, MING, STAB), we established four hierarchical exclosure setups (two in short- and two in tall-grass vegetation), whereas in the small grasslands (BOTS, DADA, MARG) only one setup was erected per vegetation type. BOTS = Val dal Botsch, GRIM = Grimmels, MING = Val Mingér, STAB = Alp Stabelchod, DADA = Stabelchod da daint, MARG = Margunet

Fence: Number of exclosure setup (1 - 18). Note that uneven numbers (1,3,5,7,9,11,13,15,17) represent setups established on short-grass vegetation, even numbers (2,4,6,8,10,12,14,16,18) setups established in tall-grass vegetation
Vegetation	Vegetation type, 1 = short-grass vegetation, 2 = tall-grass vegetation; (9 replicate fences on each vegetation type)
Treatment	Progressive animal exclusion, numbers indicate which animals had access to the plot: 1 = Large/medium/small mammals, and invertebrates have access ("L/M/S/I"), 2 = Medium/small mammals, and invertebrates have access (“M/S/I”), 3 = Small mammals and invertebrates have access (“S/I”), 4 = Invertebrates have access (“I”), 5 = No animals have access (“None”)

Bulkden:	Fine fraction soil bulk density (g cm-3)

Soil.moist	: Soil moisture (%)

Soil.org.C: Rhizosphere soil C content (%)

pH: Soil pH

Nema.PC1: First principal component (PC1) of principal component analysis (PCA) of the soil nematode community composition

Nema.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil nematode community composition

Micro.PC1: 	First principal component (PC1) of principal component analysis (PCA) of the soil microbial community composition

Micro.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil microbial community composition

Abv.Inv.PC1: First principal component (PC1) of principal component analysis (PCA) of the aboveground-dwelling invertebrate community composition

Abv.Inv.PC2: Second principal component (PC2) of principal component analysis (PCA) of the aboveground-dwelling invertebrate community composition

Arthr.PC1: First principal component (PC1) of principal component analysis (PCA) of the soil arthropod community composition

Arthr.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil arthropod community composition

Plant.PC1: First principal component (PC1) of principal component analysis (PCA) of the plant community composition

Plant.PC2: Second principal component (PC2) of principal component analysis (PCA) of the plant community composition

Root.biomass: Root biomass (g m-2)

Micro.biomass	: Microbial biomass carbon (mg kg-1)

Plant.richness: Plant species richness

Plant.N: Plant tissue nitrogen content (%)

Soil.N.min: Soil net nitrogen mineralisation (kg ha-1 season)

Soil.resp: Soil carbon dioxide emissions (soil respiration; g m-2 h-1)

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:
 > Risch AC, Ochoa-Hueso R, van der Putten WH, Bump JK, Busse MD, Frey B, Gwiazdowicz DJ, Page-Dumroese DS, Vandegehuchte ML, Zimmermann S, Schütz M. Size-dependent loss of aboveground animals differentially affects grassland ecosystem coupling and functions. 2018. Nature Communications 9: 3684. [doi: 10.1038/s41467-018-06105-4](https://doi.org/10.1038/s41467-018-06105-4).

Please cite this paper together with the citation for the datafile.

#Methods
Study sites
The experimental exclosure setups were installed within the SNP (IUCN category Ia preserve; Dudley 2008), in south-eastern Switzerland. The park covers 172 km2 of forests and subalpine and alpine grasslands along with scattered rock outcrops and scree slopes. The entire area has been protected from human impact (no hunting, fishing, camping or off-trail hiking) since 1914. Large, fairly homogenous patches of short- and tall-grass vegetation, which originate from different historical management and grazing regimes, cover the park’s subalpine grasslands entirely. Short-grass vegetation developed in areas where cattle used to rest (nutrient input) prior to the park’s foundation (14th century to 1914) (Schütz and others 2003, 2006) and is dominated by lawn grass species such as Festuca rubra L., Briza media L. and Agrostis capillaris L. (Schütz and others 2003, 2006). Today, this vegetation type is intensively grazed by diverse vertebrate and invertebrate communities that inhabit the park and consume up to 60% of the available biomass (Risch and others 2013). Tall-grass vegetation developed where cattle formerly grazed, but did not rest, and is dominated by rather nutrient-poor tussocks of Carex sempervirens Vill. and Nardus stricta L. (Schütz and others 2003, 2006). This vegetation type receives considerably less grazing, with only roughly 20% of the biomass consumed (Risch and others 2013). Consequently, the two vegetation types together represent a long-term trajectory of changes in grazing regimes. Underlying bedrock of all grasslands is dolomite, which renders these grasslands rather poor in nutrients regardless of former and current land-use regimes.
Experimental design
To progressively exclude aboveground vertebrate and invertebrate animals, we established 18 size-selective exclosure setups (nine in short-grass, nine in tall-grass vegetation) distributed over six subalpine grasslands across the SNP (Risch and others 2013, 2015). Elevation differences of exclosure locations did not exceed 350 m (between 1975 and 2300 m a.s.l.). The exclosures were established immediately after snowmelt in spring 2009 and were left in place for five consecutive growing seasons (until end of 2013). They were, however, temporarily dismantled every fall (late October after first snowfall) to protect them from avalanches. They were re-established in the same location every spring immediately after snowmelt. Each size-selective exclosure setup consisted of five plots (2 x 3 m) that progressively excluded aboveground vertebrates and invertebrates from large to small. The plots are labelled according to the guilds that had access to them “L/M/S/I”, “M/S/I”, “S/I”, “I”, “None”; L = large mammals, M = medium mammals, S = small mammals, I = invertebrates, None = no animals had access. As we only had permission to have the experimental setup in place for five consecutive growing seasons, the experiment had to be completely dismantled in the late fall of 2013 and all material removed from the SNP.
Our exclosure design was aimed at excluding mammalian herbivores, but naturally also excluded the few medium and small mammalian predators, as well as the entire aboveground invertebrate food web. A total of 26 large to small mammal species can be found in the SNP, but large apex predators are missing (wolf, bear, lynx) . Reptiles, amphibians and birds are scarce to absent in the subalpine grasslands under study. Only two reptile species occur in the park and they are confined to rocky areas that warm up enough for them to survive. One frog species spawns in an isolated pond far from our grasslands. Only three bird species occasionally feed on the subalpine grasslands. Using game cameras (Moultrie 6MP Game Spy I-60 Infrared Digital Game Camera, Moultrie Feeders, Alabaster, AL, USA), we did observe that the medium- and small-sized mammals (marmot/hares and mice) were not afraid to enter the fences and feed on their designated plots. We never spotted reptiles, amphibians or birds on camera. We distinguished between 59 higher aboveground-dwelling invertebrate taxa that our size-selective exclosures excluded (see also methods for aboveground-dwelling invertebrates below).
The “L/M/S/I” plot (not fenced) was located at least 5 m from the 2.1 m tall and 7 x 9 m large main electrical fence that enclosed the other four plots. The bottom wire of this fence was mounted at 0.5 m height and was not electrified to enable safe access for medium and small mammals, while fencing out the large ones. Within each main fence, we randomly established four 2 x 3 m plots separated by 1-m wide walkways from one another and from the main fence line: 1) the “M/S/I” plots were unfenced, allowing access to all but the large mammals; 2) the “S/I” plots (10 x 10 cm electrical mesh fence) excluded all medium-sized mammals. Note that the bottom 10 cm of this fence remained non-electrified to enable safe access for small mammals; 3) the “I” plots (2 x 2 cm metal mesh fence) excluded all mammals. We double-folded the mesh at the bottom 50 cm to reduce the mesh size to smaller than 1 x 1 cm openings; and 4) the “None” plots were surrounded by a 1 m tall mosquito net (1.5 x 2 mm) to exclude all animals. The top of the plot was covered with a mosquito-meshed wooden frame mounted to the corner posts (roof). We treated these plots a few times with biocompatible insecticide (Clean kill original, Eco Belle GmbH, Waldshut-Tiengen, Germany) to remove insects that might have entered during data collection or that hatched from the soil, but amounts were negligible and did not impact soil moisture conditions within these plots.
To assess whether the design of the “None” exclosure (mesh and roof) affected the response variables within the plots and, therefore, influenced the results, we established an additional six “micro-climate control” exclosures (one in each of the six grasslands) (Risch and others 2013, 2015). These exclosures were built as the “None” exclosures but were open at the bottom (20 cm) of the 3-m side of the fence facing away from the prevailing wind direction to allow invertebrates to enter. A 20-cm high and 3-m long strip of metal mesh was used to block access to small mammals. Thus, this construction allowed a comparable micro-climate to the “None” plots, but also a comparable feeding pressure by invertebrates to the “I” plots. We compared various properties within these exclosures against one another to assess if our construction altered the conditions in the “None” plots. We showed that differences in plant (e.g., vegetation height, aboveground biomass) and soil properties (e.g., soil temperature, moisture) found between the “I” and the “None” treatments were not due to the construction of the “None” exclosure, but a function of animal exclusions, although the amount of UV light reaching the plant canopy was significantly reduced (Risch and others 2013).
Aboveground invertebrate sampling
Aboveground invertebrates were sampled with two different methods to capture both ground- and plant-dwelling organisms: 1) we randomly placed two pitfall traps (67 mm in diameter, covered with a roof) filled with 20% propylene glycol in one 1 x 1 m subplot of the 2 x 3 m treatment plots in spring 2013 (May) and emptied them every two weeks until late September 2013 (Vandegehuchte and others 2017b, 2018). A pitfall trap consisted of a plastic cylinder (13 cm depth, 6.75 cm diameter). Within each cylinder we placed a 100 ml plastic vial with outer diameter 6.70 cm and on top of the cylinder we placed a plastic funnel to guide the invertebrates into the vials. Each trap was cover with a cone-shaped and transparent plastic roof to protect the trap from rain (Vandegehuchte and others 2017b, 2018). Note that in the “None” plots only one trap was placed as control to check for effectiveness of the exclosure. 2) We vacuumed all invertebrates from a 60 x 60 cm area on another 1 x 1 m subplot with a suction sampler (Vortis, Burkhard manufacturing CO, Ltd., Rickmansworth, Hertfordshire, UK) every month from June to September 2013 (Vandegehuchte and others 2017b, 2018). For this purpose, we quickly placed a square plastic frame (60 x 60 x 40 cm) with a closable mosquito mesh sleeve attached to the top edge into the plot from the outside. The suction sample was then inserted into through the sleeve and operated for 45 s to collect the invertebrates (Vandegehuchte and others 2017b, 2018).
We sorted the ≈100 000 individuals collected with both methods by hand and identified each individual morphologically to the lowest taxonomic level feasible (59 taxa, including orders, suborders, subfamilies, families; phylum for Mollusca). These taxa belonged to the following feeding types: 19 herbivores, 16 detritivores, 9 predators, 8 mixed feeders, 5 omnivores and 2 non-classified feeders (or not feeding as adults) (Vandegehuchte and others 2017b). We summed the numbers from the two pitfall traps and the suction sampling over the course of the 2013 season to represent the aboveground invertebrate abundance and community composition of a plot. Note: we did not specifically attempt to catch flying invertebrates with e.g., sticky traps, thus a few flying insects may have been missed with our vacuum sampling approach.
Sampling of plant properties
The vascular plant species composition was assessed at peak biomass every summer (July) by estimating the frequency of occurrence of each species with the pin count method in each plot (Frank and McNaughton 1990). A total of 172 taxa occurred within our 90 plots and we calculated plant species richness for each plot separately. We used the 2013 data in this study. Plant quality was assessed every year in July and September; here we use plant quality at the end of the experiment (September 2013). Two 10 x 100 cm wide strips of vegetation per plot were clipped, combined, dried at 65°C, and ground (Pulverisette 16, Fritsch, Idar-Oberstein, Germany) to pass through a 0.5 mm sieve. Twenty randomly selected samples across all treatments were analysed for N (Leco TruSpec Analyser, Leco, St. Joseph, Michigan, USA) (Vandegehuchte and others 2015). Nitrogen concentrations of the other samples were then estimated from models established for the experiment and the entire SNP relating Fourier transform-near infrared reflectance (FT-NIR) spectra to the measured values of N using a multi-purpose FT-NIR spectrometer (Bruker Optics, Fällanden, Switzerland) (Vandegehuchte and others 2015). Root biomass was sampled every fall by collecting five 2.2 cm diameter x 10 cm deep soil samples (Giddings Machine Company, Windsor, CO, USA) per plot (450 samples year-1). The samples were dried at 30 °C and roots were sorted from the sample by hand. We sorted each sample for 1 h which allowed to retrieve over 90% of all roots present in the samples (Risch and others 2013). The roots were then dried at 65 °C for 48 and weighed to the nearest mg. We averaged the values per plot and used the 2013 data only in this study.
Sampling of edaphic communities
In 2009, 2010, and 2011 we collected three composited soil samples (5 cm diameter x 10 cm depth; AMS Samplers, American Falls, ID, USA) and assessed bacterial community structure using T-RFLP profiling (Liu and others 1997; Blackwood and others 2003; Hodel and others 2014). We detected a total of 89 operational taxonomic units (OTUs). These values are in accordance with other studies reporting OTU richness (Wirthner and others 2011; Zumsteg and others 2012; Meola and others 2014) using T-RFLP profiling, a method that detects the most abundant, and thus likely, the most relevant, taxa. We averaged the data over the three years of collections for our calculations. Microbial biomass carbon (MBC) was determined with the substrate-induced method (Anderson and Domsch 1978) every fall (September) between 2009 and 2013 by collecting three mineral soil samples (5 cm diameter × 10 cm mineral soil core, AMS Samplers, American Falls, ID, USA). The three samples were combined (90 samples for each sampling year), immediately put on ice, taken to the laboratory, passed through a 2-mm sieve and stored at 4°C. Again, we only used the 2013 data in this study.
Soil samples (5 cm diameter x 10 cm depth) to extract soil arthropods were collected in June, July, and August 2011 with a soil corer lined with a plastic sleeve to ensure an undisturbed sample (total of 270 samples). The plastic line core was immediately sealed on both ends using cling film and put into a cooler. All plots were sampled within three days and the extraction of arthropods started the evening of the sampling day using a high-gradient Tullgren funnel apparatus (Crossley and Blair 1991; Vandegehuchte and others 2015). Samples were kept in the extractor for four days and the soil arthropods were collected in 95% ethanol. All individuals were counted and each individual was identified morphologically to the lowest level feasible [76 taxa, including orders, suborders, subfamilies, families (Protura, Thysanoptera, Aphidina, Psylina, Coleoptera, Brachycera, Nematocera, Auchenorryncha, Heteroptera, Formicidae); sub-phylum for Myriapoda, for Acari and Collembola also including morpho-species). Note that we also included larval stages (nine of the 76 taxa) (Vandegehuchte and others 2015). All data were summed over the season. A detailed species list for mites and collembolans is published (Vandegehuchte and others 2017a) [https://doi.org/10.1371/journal.pone.0118679.s001]. Earthworms are rare in the SNP and therefore were not included. We collected eight random 2.2 cm diameter x 10 cm deep soil cores from each plot in September 2013 to determine the soil nematode community composition. The samples were mixed and the nematodes were extracted from 100 ml of fresh soil using Oostenbrink elutriators (Oostenbrink 1960). All nematodes in a 1 ml of the 10 ml extract were counted, a minimum of 150 individuals sample-1 were identified to genus or family level using (Bongers 1988), the numbers of all nematodes were extrapolated to the entire sample and expressed for a 100 g dry sample. In total we identified 63 genus or family levels (Vandegehuchte and others 2015). The list of all the nematodes found is published (Vandegehuchte and others 2015) [http://www.oikosjournal.org/appendix/oik-03341] or DOI: [doi: 10.1111/oik.03341].
We are aware that sampling soil microbes from 2009 to 2011 and soil arthropods in 2011 was not ideal, but we are positive that this does not bias the results. Most of the parameters measured in our experiment either already showed a treatment response after the first growing season (e.g., plant biomass) or did not respond over the entire time experiment (e.g., microbial biomass C). The microbial community composition (2009 – 2011) was highly influenced by inter-annual differences in temperature and precipitation, but did not differ between treatments or vegetation types (Hodel and others 2014). We therefore felt comfortable using the 2009 through 2011 data for describing the soil microbial community in our experimental treatments. Similarly, we are positive that our soil arthropod data are representative. We did assess soil arthropods in August 2012 and found no differences to the August 2011 data. However, we did not feel comfortable combining the 2011 June, July, August data with only August data for 2012 for our analyses.
Sampling of soil properties
We collected three soil samples (5 cm diameter x 10 cm depth) in each plot in September 2013 after removing the vegetation. First, we collected the top layer of mineral soil rich in organic matter, the surface organic layer or rhizosphere, typically 1 to 3 cm in depth with a soil corer (AMS Samples, American Falls, Idaho, USA). Second, we collected a 10 cm mineral soil core beneath this surface layer. The cores for each layer were composited, dried at 65 °C for 48 h and fine-ground to pass a 0.5 mm screen. We then analysed all samples for total C using a Leco TruSpec Analyser (Leco, St. Joseph, Michigan, USA). Mineral soil pH was measured potentiometrically in 1:2 soil:CaCl2 solution with an equilibration time of 30 min.
Soil net N mineralisation was assessed during the 2013 growing season (Risch and others 2015). For this purpose, we randomly collected a 5 cm diameter x10 cm deep soil sample with a soil corer (AMS Samples, American Falls, Idaho, USA) after clipping the vegetation in June 2013. After weighing and sieving (4 mm mesh) the soil, we extracted a 20 g subsample in 1 mol l-1 KCl for 1.5 h on an end-over-end shaker and thereafter filtered it through ashless folded filter paper (DF 5895 150, ALBET LabScience, Hahnenmühle FineArt GmbH, Dassel, Germany). From these filtrates NO3- concentrations were measured colorimetrically (Norman and Stucki 1981) and NH4+with flow injection analysis (FIAS 300, Perkin Elmer, Waltham Massachusetts, USA) (Risch and others 2015). We dried the rest of the sample 105 °C to constant mass to determine fine,fraction bulk density. A second soil sample was collected within each plot in June 2013 with a corer lined with a 5 x 13 cm aluminium cylinder. The corer was driven 11.5 cm deep into the soil so that the top 1.5 cm of the cylinder remained empty. Into this space we placed a polyester bag (250 µm) filled an ion-exchanger resin to capture the incoming N. The bag was filled with a 1:1 mixture of acidic and alkaline exchanger resin (ion-exchanger I KA/ion exchanger IIIAA, Merck AG, Darmstadt, Germany). We then removed 1.5 cm soil at the bottom of the cylinder and placed a second resin exchanger bag into this space to capture the N leached from the soil column. To assure that the exchange resin was saturated with H+ and Cl- prior to filling the bags, the mixture was stirred with 1.2 ml l-1 HCl for 1 h and then rinsed with demineralized water until the electrical conductivity of the water reached 5 µm cm-1. The cylinder with the resin bags in place was reinserted into the soil with the top flush to the soil surface and incubated for three months. We recollected the cylinders in September 2013. Each resin bag and 20 g of sieved soil (4 mm mesh) from each cylinder were then separately extracted with KCl and NO3- and NH4+ concentrations were measured. Nitrate and NH4+ concentrations of all samples were then converted to a content basis by multiplying their values with fine fraction bulk density. Net N mineralisation was thereafter calculated as the difference between the N content of the samples collected at the end of the three-month incubation (including the N extracted from the bottom resin bag) and the N content at the beginning of the incubation (Risch and others 2015).
Soil CO2 emissions were measured every two weeks between 0900 and 1700 hrs from early May through late September 2013 with a PP-Systems SRC-1 soil respiration chamber (15 cm high, 10 cm diameter; closed circuit) attached to a PP-Systems EGM-4 infrared gas analyser (PP-Systems, Amesbury, MA, USA) on two locations per plot (Risch and others 2013). The chamber was placed on randomly placed, permanently installed PVC collars (10 cm diameter) driven 5 cm into the soil at the beginning of the study (Risch and others 2013). Freshly germinated plants growing within the collars were removed prior to each measurement to avoid measuring plant respiration or photosynthesis. The two measurements collected per plot and sampling date were averaged.
Soil moisture (with time domain reflectometry; Field-Scout TDR-100, Spectrum Technologies, Plainfield, Illionois, USA) and temperature (with a waterproof digital pocket thermometer; Barnstead International, Dubuque, Iowa, USA) were measured at five random locations per plot every two weeks during the growing seasons during the experiment for the 0 to 10 cm depth (Risch and others 2013, 2015). As soil moisture and soil temperature were highly negatively correlated (Risch and others 2013), we only used soil moisture for this study. We used plot-level averages of all values available to capture soil moisture variability during the five years of the experiment. The results remained unchanged when we only used soil moisture from the 2013 growing season.
Numeral calculations and statistical analyses
Ecosystem coupling. We conducted principal component analyses (PCAs; unscaled) at the complete dataset level using the abundances of each taxonomical entity to describe each of the five different communities used in this study: aboveground-dwelling invertebrates, vascular plants, soil microorganisms, soil arthropods and soil nematodes. We retained the first two components (PCA axis 1 and PCA axis 2) of each analysis as we found them to adequately represent the temporal and spatial variability of our 90 treatment plots in previous studies55,67. Together they explained a total of 71.70% of the variation for aboveground invertebrates, 44.36% for plants, 44.85% for soil microorganisms, 61.85% for soil arthropods and 77.19% for soil nematodes. In addition, we used soil pH and soil organic C content as a proxy for soil chemical properties, soil bulk density as a proxy for soil physical properties and soil moisture (negatively correlated with soil temperature) as a proxy for soil micro-climatic conditions for an overall total of fourteen constituents.
We calculated ecosystem coupling9 for each exclosure treatment within each vegetation type (i.e., 2  5 treatment combinations in total) as an integrated measure of pairwise ecological interactions between ecosystem constituents representing ecological communities and the soil abiotic environment. These ecological interactions are defined by non-parametric Spearman rank correlation analyses between two constituents, excluding interactions involving two abiotic constituents (e.g., soil pH vs. soil moisture) and interactions between the first (PC1) and second (PC2) component of each community type, as these are orthogonal by definition. Interactions between abiotic constituents were excluded from the analyses because the focus of our study was on communities and how they interact with one another and their surrounding environment; therefore, including abiotic-abiotic interactions was not of interest here. Given that the effectiveness of our experimental design resulted in that no community composition data of aboveground-dwelling invertebrates was available for the “None” plots (all animals excluded), only thirteen instead of fourteen constituents were included in the ecosystem coupling calculations for this treatment. The complete absence of aboveground invertebrates represents the most extreme case of disturbance between aboveground animal communities and the rest of the ecosystem constituents. This may have resulted in a slight overestimation of ecosystem coupling for these plots.
	Average ecosystem coupling was calculated as follows:
Ecosystem coupling=
where Xi is the absolute Coupling was calculated value of the Spearman’s rho coefficient of the ith correlation for each treatment within each vegetation type (i.e., based on nine replicates each), considering and n is the number of pairwise comparisons considered (n = a total of 80; interactions (56 in the case of the “None” treatment). We considered a total of 40 biotic-biotic interactions (i.e., concerning two community-level principal components such as plants and microbes; 24 in the case of the “None” treatment) and 40 abiotic-biotic (i.e., concerning one community-level principal component and one abiotic factor, e.g., plant community and soil properties; 32 in the case of the “None” treatment).	Coupling was calculated for each treatment within each vegetation type (i.e., based on nine replicates each), considering a total of 80 interactions (56 in the case of the “None” treatment). We considered a total of 40 biotic-biotic interactions (i.e., concerning two community-level principal components such as plants and microbes; 24 in the case of the “None” treatment) and 40 abiotic-biotic (i.e., concerning one community-level principal component and one abiotic factor, e.g., plant community and soil properties; 32 in the case of the “None” treatment).
To establish whether constituents were significantly and positively coupled within treatments (i.e., the average of their correlation coefficients were greater than in a null model where correlation only happens by chance), we calculated one-tailed p-values based on permutation tests with 999 permutations.

We considered six ecosystem functions and process rates commonly used to assess ecosystem functioning (Meyer and others 2015; Manning and others 2018). Plant N content represents a measure of forage quality, while plant richness has been shown to stabilise biomass production, thus allowing the system to respond to changes in herbivory. Soil net N mineralisation, soil respiration, root biomass, and microbial biomass represent fluxes or stocks of energy. For all functions and processes higher values represent higher functioning (Manning and others 2018). All these variables were measured in the last year of the experiment (2013). We then quantified ecosystem multifunctionality using the multiple threshold approach (Byrnes and others 2014; Manning and others 2018), which considers the number of functions that are above a certain threshold, over a series of threshold values (typically 10-99%) that are defined based on the maximum value of each function. We weighted all our functions equally for these calculations (Manning and others 2018). The number of functions in a plot with values higher than a given threshold value for the respective function is summed up. The sum represents ecosystem multifunctionality for that plot. Given that choosing any particular threshold as a measure of ecosystem multifunctionality is arbitrary, we calculated the average of thresholds from 10-90% (in 10% intervals) as a more integrated representation of ecosystem multifunctionality.
We used Pearson correlations to explore the relationships between ecosystem coupling (all interactions, biotic-biotic interactions, abiotic-biotic interactions involving above- and belowground constituents, and all interactions, biotic-biotic interactions, abiotic-biotic interactions involving belowground constituents only) and ecosystem multifunctionality by calculating the slopes of all relationships between ecosystem coupling and multifunctionality for all thresholds between 10 and 99%. We also related ecosystem coupling with the average of multifunctionality at thresholds between 30-80% as explained before and considered this correlation as a robust indication of the type of association between these two variables. In addition, we explored the relationships between ecosystem coupling (all interactions, biotic-biotic interactions, abiotic-biotic interactions involving above- and belowground constituents, and all interactions, biotic-biotic interactions, abiotic-biotic interactions involving belowground constituents only) and individual ecosystem functions. The effects of exclosures and vegetation type on individual functions and multifunctionality were evaluated using linear mixed effects models ('lme' function of the nlme package), with exclosure and vegetation type as fixed effects and fence as a random factor. All statistical analyses and numerical calculations were done in R version 3.4.0 (R Core Team 2016).

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- R Core Team. 2016. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing
- Risch AC, Haynes AG, Busse MD, Filli F, Schütz M. 2013. The response of soil CO2 fluxes to progressively excluding vertebrate and invertebrate herbivores depends on ecosystem type. Ecosystems 16:1192–202.
- Risch AC, Schütz M, Vandegehuchte ML, Van Der Putten WH, Duyts H, Raschein U, Gwiazdowicz DJ, Busse MD, Page-Dumroese DS, Zimmermann S. 2015. Aboveground vertebrate and invertebrate herbivore impact on net N mineralization in subalpine grasslands. Ecology 96:3312–22.
- Schütz M, Risch AC, Achermann G, Thiel-Egenter C, Page-Dumroese DS, Jurgensen MF, Edwards PJ. 2006. Phosphorus translocation by red deer on a subalpine grassland in the Central European Alps. Ecosystems 9:624–633.
- Schütz M, Risch AC, Leuzinger E, Krüsi BO, Achermann G. 2003. Impact of herbivory by red deer (Cervus elaphus L.) on patterns and processes in subalpine grasslands in the Swiss National Park. For Ecol Manage 181:177–88.
- Vandegehuchte ML, van der Putten WH, Duyts H, Schütz M, Risch AC. 2017a. Aboveground mammal and invertebrate exclusions cause consistent changes in soil food webs of two subalpine grassland types, but mechanisms are system-speciﬁc. Oikos 126:212–23.
- Vandegehuchte ML, Raschein U, Schütz M, Gwiazdowicz DJ, Risch AC. 2015. Indirect short- and long-term effects of aboveground invertebrate and vertebrate herbivores on soil microarthropod communities. PLoS One 10:e0118679.
- Vandegehuchte ML, Schütz M, de Schaetzen F, Risch AC. 2017b. Mammal-induced trophic cascades in invertebrate food webs are modulated by grazing intensity in subalpine grassland. J Anim Ecol 86:1434–46.
- Vandegehuchte ML, Trivellone V, Schütz M, Firn J, de Schaetzen F, Risch AC. 2018. Mammalian herbivores affect leafhoppers associated with specific plant functional types at different timescales. Funct Ecol 32:545–55.
- Wirthner S, Frey B, Busse MD, Schütz M, Risch AC. 2011. Effects of wild boar (Sus scrofa L.) rooting on the bacterial community structure in mixed-hardwood forest soils in Switzerland. Eur J Soil Biol 47:296–302. http://dx.doi.org/10.1016/j.ejsobi.2011.07.003
- Zumsteg A, Luster J, Göransson H, Smittenberg RH, Brunner I, Bernasconi SM, Zeyer J, Frey B. 2012. Bacterial, Archaeal and Fungal Succession in the Forefield of a Receding Glacier. Microb Ecol 63:552–64. https://doi.org/10.1007/s00248-011-9991-8

ecosystem-coupling

display_name: ecosystem-coupling

ecosystem-functions

display_name: ecosystem-functions

ecosystem-multifunctionality

display_name: ecosystem-multifunctionality

exclusion

display_name: exclusion

grassland

display_name: grassland

grazing

display_name: grazing

invertebrates

display_name: invertebrates

subalpine

display_name: subalpine

swiss-national-park

display_name: swiss-national-park

vertebrates

display_name: vertebrates

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Ecosystem coupling and multifunctionality - exclosure experiment


maintainer: Joan Casanelles Abella

en: zurich antwerp trap-nest tartu paris chelostoma-florisomne osmia-cornuta poznan urban-ecology cavity-nesting-bees hylaeus-communis osmia-bicornis plant-pollinator-interactions dna-metabarcoding

state: active

type: dataset

en: Larval food composition

media_type: text/csv

format: CSV

en: Explanation data variables

en: Urbanization poses threats and opportunities for the biodiversity of wild bees. A main gap relates to the food preferences of wild bees in urban ecosystems, which usually harbour large numbers of plant species, particularly at the larval stage. This data sets describes the larval food of four wild bee species (i.e. Chelostoma florisomne, Hylaeus communis, Osmica bicornis and Osmia cornuta) and three genera (i.e. Chelostoma sp., Hylaeus sp, and Osmia sp.) common in urban areas in five different European cities (i.e. Antwerp, Paris, Poznan, Tartu and Zurich). This data results from a European-level study aimed at understanding the effects of urbanization on biodiversity across different cities and citiscapes, and a Swiss project aimed at understanding the effects of urban ecosystems in wild bee feeding behaviour. Wild bees were sampled using standardized trap-nests in 80 sites (32 in Zurich and 12 in each of the remaining cities), selected following a double gradient of available habitat at local and landscape scales. Larval pollen was obtained from the bee nests and identified using DNA metabarconding. The data provides the plant composition at the species or genus level of the different bee nests of the studied species in the studied sites of the five European cities. For Hylaeus communis, this is the first study in reporting larval food composition.

antwerp

display_name: antwerp

cavity-nesting-bees

display_name: cavity-nesting-bees

chelostoma-florisomne

display_name: chelostoma-florisomne

dna-metabarcoding

display_name: dna-metabarcoding

hylaeus-communis

display_name: hylaeus-communis

osmia-bicornis

display_name: osmia-bicornis

osmia-cornuta

display_name: osmia-cornuta

paris

display_name: paris

plant-pollinator-interactions

display_name: plant-pollinator-interactions

poznan

display_name: poznan

tartu

display_name: tartu

trap-nest

display_name: trap-nest

urban-ecology

display_name: urban-ecology

zurich

display_name: zurich

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Larval food composition of four wild bee species in five European cities


maintainer: EnviDat Support

en: sea-salt-aerosol ice arctic snow antarctica

en: Fib 1B_3

media_type: text/plain

en: Individual data to mean shown in Figure 1B

format: TXT

mimetype: text/plain

en: Fig 1E

en: Data to Figure 1E

en: Fig 1D

en: Data to Figure 1D

en: Code

en: Matlab code to read and plot the data

format: SERVICE

en: Fig 1F_2

en: Individual data to mean shown in Figure 1F

en: Fig 1B_1

en: Fig 1B_2

en: Read Me

media_type: application/pdf

en: Description of the data tables

format: PDF

mimetype: application/pdf

en: Fig 1A

en: Data Figure 1A

en: Fig 1F_1

en: This table lists all data files in chronological order. "SampleTemp" refers to the reading of the PT-1000 at the side of the sample holder. "cellPressure" is the water vapour pressure during the measurements. From this, in presence of ice, the temperature of the ice sample can be calculated which is given in the column "iceTemp". "dT" is the difference, or temperature offset, between sensor's reading and the ice samples temperature. The offset is due to the sensor being mounted away from the cooled spot of the sample were it experiences heating from warmer parts of the sample holder. The off-set is used to calibrate the temperature sensor and the resulting temperature during the experiments is given in the column "temperature". "relHum" is the relative humidity above (supercooled) liquid and "concBrine" is the concentration of a NaCl solution in mol/l in equilibrium with ice at the experimental temperature. "Area" is the integrated PE signal.

en: Fig 1F

en: Data to Figure 1F

en: Table 2

en: This table lists all NEXAFS data files in chronological order with PE carbon to oxygen signal intensity ratios -from which the atomic ratio were calculated in the paper - before ("preCtoO") and after ("postCtoO") each NEXAFS measurement. Also listed is the change in Na ("lossSodi"), O ("lossOxy"), Cl ("lossChlor"), and C ("lossCarb") signal intensity after the NEXAFS measurement compared to prior to the NEXAFS measurement.

en: Fig 1C

en: Data to Figure 1C

en: Laboratory experiments are presented on the phase change at the surface of sodium chloride – water mixtures at temperatures between 259 K and 240 K. High selectivity to the upper few nanometres of the frozen solution – air interface is achieved by using electron yield near-edge X-ray absorption fine structure (NEXAFS) spectroscopy. We present the NEXAFS spectrum of the hydrohalite.

en: Data set on interfacial supercooling and the precipitation of hydrohalite in frozen NaCl solutions by X-ray absorption spectroscopy


maintainer: Jana von Freyberg

en: stable-water-isotopes uncertainties endmember-mixing-models review root-zone plant-water-uptake ecohydrology

en: Data set of MEE-20-04-264 (CSV)

en: Data set of MEE-20-04-264

en: The following two tables contain information about the data sources of the values reported in Table 1 and 2 in the paper “Plant and root-zone water isotopes are difficult to measure, explain, and predict: some practical recommendations for determining plant water sources” published in the journal ‘Methods in Ecology and Evolution’.

en: The following two tables contain information about the data sources of the values reported in Table 1 and 2 in the paper “Plant and root-zone water isotopes are difficult to measure, explain, and predict: some practical recommendations for determining plant water sources” published in the journal 'Methods in Ecology and Evolution'.

ecohydrology

display_name: ecohydrology

endmember-mixing-models

display_name: endmember-mixing-models

plant-water-uptake

display_name: plant-water-uptake

review

display_name: review

root-zone

display_name: root-zone

stable-water-isotopes

display_name: stable-water-isotopes

uncertainties

display_name: uncertainties

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data set of: Plant and root-zone water isotopes are difficult to measure, explain, and predict: some practical recommendations for determining plant water sources


en: compression-experiments x-ray-tomography microstructure snow-mechanics snow

en: Snowmicroquakes Data

en: Compression experiments, X-ray images and simulation data with supplemented README file

en: README

en: README file explaining the organization of the data

en:
When snow is compressed with a certain speed, micro-snowquakes are triggered in the porous structure of bonded crystals. The present dataset covers uniaxial compression experiments of snow at different strain rates and concurrent X-ray tomography imaging documenting this feature.

The experiments were conducted in a micro-compression stage operated in the X-ray tomography scanner in the SLF cold laboratory. The dataset comprises the compression force data of 17 compression experiments, the 3D image data from 4 X-ray tomography scans and the results of numerical simulations.

compression-experiments

display_name: compression-experiments

microstructure

display_name: microstructure

snow

display_name: snow

snow-mechanics

display_name: snow-mechanics

x-ray-tomography

display_name: x-ray-tomography

en: Compressive stick slip and snow-micro-quakes


maintainer: Yves Bühler

en: release avalanche hazard-mapping snow hazard-indication-mapping ramms

en: RAMMS simulations NHESS

media_type: application/zip

en: Simulated maximum pressures for the scenarios frequent and extreme taking the forest layer into account

format: ZIP

mimetype: application/zip

en: Potential Release  Area  NHESS

en: This folder contains the output of the different investigated algorithms plus the reference dataset, used for training and validation.

en:
This dataset contains the output and reference data published in the paper "Automated snow avalanche release area delineation - validation of existing algorithms and proposition of a new object-based approach for large scale hazard indication mapping" Yves Bühler, Daniel von Rickenbach, Andreas Stoffel, Stefan Margreth, Lukas Stoffel, Marc Christen (2018) Natural Hazards And Earth System Sciences.

Abstract:
Snow avalanche hazard is threatening people and infrastructure in all alpine regions with seasonal or permanent snow cover around the globe. Coping with this hazard is a big challenge and during the past centuries, different strategies were developed. Today, in Switzerland, experienced avalanche engineers produce hazard maps with a very high reliability based on avalanche cadastre information, terrain analysis, climatological datasets and numerical modelling of the flow dynamics for selected avalanche tracks that might affect settlements. However, for regions outside the considered settlement areas such area-wide hazard maps are not available mainly because of the too high cost, in Switzerland and in most mountain regions around the world. Therefore, hazard indication maps, even though they are less reliable and less detailed, are often the only spatial planning tool available. To produce meaningful and cost-effective avalanche hazard indication maps over large regions (regional to national scale), automated release area delineation has to be combined with volume estimations and state-of-the-art numerical avalanche simulations.

In this paper we validate existing potential release area (PRA) delineation algorithms, published in peer-reviewed journals, that are based on digital terrain models and their derivatives such as slope angle, aspect, roughness and curvature. For validation, we apply avalanche cadastre data from three different ski resorts in the vicinity of Davos, Switzerland, where experienced ski-patrol staff mapped most avalanches in detail since many years. After calculating the best fit input parameters for every tested algorithm, we compare their performance based on the reference datasets. Because all tested algorithms do not provide meaningful delineation between individual potential release areas (PRA), we propose a new algorithm based on object-based image analysis (OBIA). In combination with an automatic procedure to estimate the average release depth (d0), defining the avalanche release volume, this algorithm enables the numerical simulation of thousands of avalanches over large regions applying the well-established avalanche dynamics model RAMMS. We demonstrate this for the region of Davos for two hazard scenarios, frequent (10 – 30 years return period) and extreme (100 – 300 years return period). This approach opens the door for large scale avalanche hazard indication mapping in all regions where high quality and resolution digital terrain models and snow data are available.

avalanche

display_name: avalanche

hazard-indication-mapping

display_name: hazard-indication-mapping

hazard-mapping

display_name: hazard-mapping

ramms

display_name: ramms

release

display_name: release

en: Automated Avalanche Release Area (PRA) Delineation Davos


en: sdms urban-ecology urbanization arthropods birds species-richness-models spiders diversity insects snails species-abundance-distributions

en: contains the raw data to perform the species richness models of all species

en: contains the raw data to perform species distribution models, only for common species

en: abundance and occurrence data of the 1446 species studied, used to investigate species-abundance distributions and species-occurrence distributions

en: contains the raw data to perform the species richness models of the hypercommon species

en: contains the raw data to perform the species richness models of the rare species

en:
Richness, site occurrence and abundance data of bees, beetles, birds, hoverflies, net-wingeds, true bugs, snails, spiders, milipides, wasps collected in the city of Zurich using different sampling techniques, and the environmental variables for each sampling site.
Data are provided on request to contact person against bilateral agreement.

arthropods

display_name: arthropods

birds

display_name: birds

diversity

display_name: diversity

insects

display_name: insects

sdms

display_name: sdms

snails

display_name: snails

species-abundance-distributions

display_name: species-abundance-distributions

species-richness-models

display_name: species-richness-models

spiders

display_name: spiders

urban-ecology

display_name: urban-ecology

urbanization

display_name: urbanization

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Ecological properties of urban ecosystems. Biodiversity dataset of Zurich


maintainer: Franziska Gerber

en: cryowrf consistent aws python antarctica

en: Scripts to preprocess (and download for some databases) atmospheric weather station data. Furthermore, a list of stations and a map can be created to have an overview.

en:
There are many sources providing atmospheric weather station data for the Antarctic continent. However, variable naming, timestamps and data types are highly variable between the different sources. The published python code intends to make processing of different AWS sources from Antarctica easier. For all datasets that are taken into account variables are renamed in a consistent way. Data from different sources can then be handled in one consistent python dictionary.

The following data sources are taken into account:

* AAD: Australian Antarctic Division (https://data.aad.gov.au/aws)
* ACECRC: Antarctic Climate and Ecosystems Cooperative Research Centre by the Australian Antarctic Division
* AMRC: Antarctic Meteorological Research Center (ftp://amrc.ssec.wisc.edu/pub/aws/q1h/)
* BAS: British Antarctic Survey (ftp://ftp.bas.ac.uk/src/ANTARCTIC_METEOROLOGICAL_DATA/AWS/; https://legacy.bas.ac.uk/met/READER/ANTARCTIC_METEOROLOGICAL_DATA/)
* CLIMANTARTIDE: Antarctic Meteo-Climatological Observatory by the italian National Programme of Antarctic Research (https://www.climantartide.it/dataaccess/index.php?lang=en)
* IMAU: Institute for Marine and Atmospheric research Utrecht (Lazzara et al., 2012), https://www.projects.science.uu.nl/iceclimate/aws/antarctica.ph
* JMA: Japan Meteorological Agency (https://www.data.jma.go.jp/antarctic/datareport/index-e.html)
* NOAA: National Oceanic and Atmospheric Administration (https://gml.noaa.gov/aftp/data/meteorology/in-situ/spo/)
* Other/AWS_PE: Princess Elisabeth (PE), KU Leuven, Prof. N. van Lipzig, personal communication
* Other/DDU_transect: Stations D-17 and D-47 (in transect between Dumont d’Urville and Dome C, Amory, 2020)
* PANGAEA: World Data Center (e.g. König-Langlo, 2012)

Important notes

* Information about data sources is available. Some downloading scripts are included in the provided code. However, users should make sure to comply with the data providers terms and conditions.
* Given changing download options of the differnent institutions the above links may not permanently work and data has to be retrieved by the user of this dataset.
* No quality control is applied in the provided preprocessing software - quality control is up to the user of the datasets. Some dataset are quality controlled by the owner.

Acknowledgements
--------------------------
We thank all the data providers for making the data publicly available or providing them upon request. Full acknowledgements can be found in Gerber et al., submitted.

References
---------------
Amory, C. (2020). “Drifting-snow statistics from multiple-year autonomous measurements in Adélie Land, East
Antarctica”. The Cryosphere, 1713–1725. doi: 10.5194/tc-14-1713-2020

Gerber, F., Sharma, V. and Lehning, M.: CRYOWRF - a validation and the effect of blowing snow on the Antarctic SMB, JGR - Atmospheres, submitted.

König-Langlo, G. (2012). “Continuous meteorological observations at Neumayer station (2011-01)”. Alfred Wegener
Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, doi: 10.1594/PANGAEA.
775173

antarctica

display_name: antarctica

aws

display_name: aws

consistent

display_name: consistent

cryowrf

display_name: cryowrf

python

display_name: python

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Preprocessing Antarctic Weather Station (AWS) data in python


maintainer: Matthias Haeni

en: meteo par long-term relative-humidity precipitation climate-change wind-speed meteorology swiss-forest-lab temperature

en: Data plot of the forest station (ALB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Site aerial photo (Alpthal)

en: Site aerial photo from the Alpthal forest station. Source: Google. 2016. Site aerial photo from the Alpthal forest station. Retrieved November 11, 2016, from https://www.google.ch/maps

mimetype: image/jpeg

en: Forest station data (ALB)

mimetype: text/csv

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for one meteorological station in Alpthal in Switzerland which is located within a natural coniferous forest (ALB) with Norway spruce (_Picea abies_; 180-230 yrs) as dominant tree species. The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Alpthal is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Alpthal, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


en: snow-mechanics snow-failure snow-avalanche viscous-deformation snow fiber-bundle-model sintering acoustic-emissions

en: fiber-bundle-model-for-snow-failure

en: Data underlying Figures in publication "Modelling Snow Failure Behavior and Concurrent Acoustic Emissions Signatures with a Fiber Bundle Model" submitted to "Geophysical Research Letters"

en:
This dataset contains modeled and experimental results for laboratory snow failure experiments and the concurrent acoustic emissions signatures for different loading rates. For modelling the snow failure we used a fiber bundle model that includes sintering and viscous deformation.

The data underlay the figures in the publication "Modelling Snow Failure Behavior and Concurrent Acoustic Emissions Signatures with a Fiber Bundle Model" submitted for publication to "Geophysical Research Letters".

acoustic-emissions

display_name: acoustic-emissions

fiber-bundle-model

display_name: fiber-bundle-model

sintering

display_name: sintering

snow

display_name: snow

snow-avalanche

display_name: snow-avalanche

snow-failure

display_name: snow-failure

snow-mechanics

display_name: snow-mechanics

viscous-deformation

display_name: viscous-deformation

en: Fiber Bundle Model for snow failure and concurrent Acoustic Emissions


maintainer: Lyu

en: species-distribution-model species-range-map fagales species-occurrence pinales species-richness

en: Species range maps of species in Fagales and Pinales (with enough occurrences)

en: species_map.zip includes species 1690 range maps generated based on the integrated method described in Lyu et al., (2022). File names with (polygon) indicate that this map is only generated by polygon mapping, as there are not enough occurrences for SDMs.

en: Occurrence maps for species of Fagales and Pinales with few records

en: Point_buffer.zip includes 267 occurrence maps of species that do not have enough occurrence data for polygon mapping.

en:
This database contains 1957 distribution maps of species from Fagales and Pinales constructed based on a method integrating polygon mapping and SDMs (Lyu et al., 2022).
To construct the maps, we first collected occurrence data from 48 different sources. According to the number of occurrences after data cleaning, three kinds of maps are constructed: (1) For species with more than 20 occurrences, we performed SDM and polygon mapping described in Lyu et al. (2022) and select the integration of the two layers as the distribution range; (2) For species with more than 4 but less than 20 occurrences, we only use polygon mapping to draw the distribution range; (3) For species with less than 4 occurrences, a 20-km buffer was generated around the occurrences as the distribution range. The maps were manually checked and evaluated (see Note S3 and Table S9 in Lyu et al., 2022 for details).

fagales

display_name: fagales

pinales

display_name: pinales

species-distribution-model

display_name: species-distribution-model

species-occurrence

display_name: species-occurrence

species-range-map

display_name: species-range-map

species-richness

display_name: species-richness

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Species distribution maps of Fagales and Pinales (GDPlants)


snow-drift-station-flowcapt

maintainer: Benjamin Walter

title_for_slug: snow-drift-station-flowcapt

en: snowdrift flowcapt acoustic-mass-flux snow-blowing wind-speed raclets

en: minimum mass flux

en: The data file contains the minimum mass flux of 10 minute intervalls. The duration of one cycle was 1 min and contained 6s observations and 54 s stand-by. The time is given in UTC+1.

format: XLS

en: maximum wind speed

en: The data file contains the maximum wind speed in 10 minute intervalls. The duration of one cycle was 1 min and contained 6 s observations and 54 s stand-by. The time is given in UTC+1.

en: minimum wind spees

en: The data file contains the minimum wind speed in 10 minute intervalls. The duration of one cycle was 1 min and contained 6s observations and 54 s stand-by. The time is given in UTC+1.

en: maximum mass flux

en: The data file contains the maximum mass flux of 10 minute intervalls. The duration of one cycle was 1 min and contained 6s observations and 54 s stand-by. The time is given in UTC+1.

en: avergaged mass flux

en: Average mass flux of 10 min measurement interval. The Cycle duration is 1 min which includes 6 s observation and 54 s stand-by. The time is given in UTC+1.

en: average wind speed

en: The data file contains the average wind speed in 10 minute intervalls. The duration of one cycle was 1 min and contained 6s observations and 54 s stand-by. The time is given in UTC+1.

en: The FlowCapt is an ultra-robust instrument measuring solid particle acoustic mass - flux intensities (g m‾ ² s‾ ¹) and wind speeds (m s‾ ¹). It was deployed at Gotschnagrat (LON: 46.859 LAT: 9.849). The vertical tube with a length of 1 m monitors snowdrift and snow-blowing; and is mounted at a height between 0.1 an 1.1 m above snow surface. The time within each data set is given in UTC+1.

acoustic-mass-flux

display_name: acoustic-mass-flux

flowcapt

display_name: flowcapt

raclets

display_name: raclets

snow-blowing

display_name: snow-blowing

snowdrift

display_name: snowdrift

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Snow Drift Station - Flowcapt


en: poznan angiospermae antwerp floral-resources urban tartu plants zurich floral-inventories paris

en: Trait values for the sampled plants

en: Floral units, mean number of flowers per floral unit and floral abundance of the different plants counted in quadrats in the study sites in Zurich during the four sampling periods

en: List of plant species sampled in the five cities (Antwerp, Paris, Poznan, Tartu and Zurich) during the different sampling perionds (four for Zurich, three for the other cities) with their frequency (oc1-oc16) within a 100 m radius

en: Data of a survey of flowering plants in 80 sites in five European cities and urban agglomerations (Antwerp, Belgium; greater Paris, France; Poznan, Poland; Tartu, Estonia; and Zurich, Switzerland) sampled between April and July 2018.

angiospermae

display_name: angiospermae

antwerp

display_name: antwerp

floral-inventories

display_name: floral-inventories

floral-resources

display_name: floral-resources

paris

display_name: paris

plants

display_name: plants

poznan

display_name: poznan

tartu

display_name: tartu

urban

display_name: urban

zurich

display_name: zurich

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Flowering Plants (Angiospermae) in Urban Green Areas in five European Cities


en: hazard-mapping natural-hazard snow avalanche satellite

en: SPOT6 Avalanche outlines 24 January 2018

en: Shapefile of the manually mapped avalanche outlines. Please only use this data together with the example key document provided with this dataset.

format: SHP

en:
Outlines of 18'737 avalanches mapped from SPOT6 satellite data over the Swiss Alps on 24 January 2018. The outlines have different attributes described in the data example key (ExampleKey_AvalMapping.pdf)

The generation of the data is described in:

Bühler, Y., E. D. Hafner, B. Zweifel, M. Zesiger, and H. Heisig (2019), Where are the avalanches? Rapid SPOT6 satellite data acquisition to map an extreme avalanche period over the Swiss Alps, The Cryosphere, 13(12), 3225-3238, doi:10.5194/tc-13-3225-2019.

Abstract.
Accurate and timely information on avalanche occurrence are key for avalanche warning, crisis management and avalanche documentation. Today such information is mainly available at isolated locations provided by observers in the field. The achieved reliability considering accuracy, completeness and reliability of the reported avalanche events is limited. In this study we present the spatial continuous mapping of a large avalanche period in January 2018 covering the majority of the Swiss Alps (12’500 km2).

We tested different satellite sensors available for rapid mapping during a first avalanche period. Based on these experiences, we tasked SPOT6/7 data for data acquisition to cover the second, much larger avalanche period. We manually mapped the outlines of 18’737 individual avalanche events, applying image enhancement techniques to analyze regions in cast shadow as well as brightly illuminated ones. The resulting dataset of mapped avalanche outlines, having a unique completeness and reliability, is evaluated to produce maps of avalanche occurrence and avalanche size. We validated the mapping of the avalanche outlines using photographs acquired from helicopters just after the avalanche period.

This study demonstrates the applicability of optical, very high spatial resolution satellite data to map an exceptional avalanche period with very high completeness, accuracy and reliability over a large region. The generated avalanche data is of great value to validate avalanche bulletins, complete existing avalanche databases and for research applications by enabling meaningful statistics on important avalanche parameters.

Koordinate System: CH1903+ LV95 LN02

avalanche

display_name: avalanche

hazard-mapping

display_name: hazard-mapping

natural-hazard

display_name: natural-hazard

satellite

display_name: satellite

snow

display_name: snow


maintainer: Elisabeth Hafner

en: avalanche validation snow satellite avalanche-hazard-mapping

en: Satellite Avalanche Mapping Validation data and data description

en: 14 shapefiles to be used only together with the data description also provided as a pdf.

en:
Validation points, validation area, ground truth coverage, SPOT 6 avalanche outlines, Sentinel-1 avalanche outlines, Sentinel-2 avalanche outlines, Davos avalanche mapping (DAvalMap) avalanche outlines as shapefiles and a detailed attribute description (DataDescription_EvalSatMappingMethods.pdf).

Coordinate system: CH1903+_LV95

The generation of this dataset is described in detail in:

Hafner, E. D., Techel, F., Leinss, S., and Bühler, Y.: Mapping avalanches with satellites – evaluation of performance and completeness, The Cryosphere, https://doi.org/10.5194/tc-2020-272, 2021.

avalanche-hazard-mapping

display_name: avalanche-hazard-mapping

validation

display_name: validation

en: Satellite avalanche mapping validation data


maintainer: Marcus Schaub

en: irrigation diameter-at-breast-height drought crown-condition lwf dbh tree tree-species swiss-forest-lab scots-pine forest

en: Site photo 1

en: Swiss Forest Health Inventory

media_type: text/html

format: HTML

mimetype: text/html

en: Shapefile	of measurement location

en: Long-term Irrigation	Experiment Pfynwald homepage

en: Dataset

en: Site photo 2

en: Site photo 3

en: To study the performance of mature Scots pine (_Pinus sylvestris_ L.) under chronic drought conditions in comparison to their immediate physiological response to drought release, a controlled long-term and large-scale irrigation experiment has been set up in 2003. The experiment is located in a xeric mature Scots pine forest in the Pfynwald (46° 18' N, 7° 36' E, 615 m a.s.l.) in one of the driest inner-Alpine valleys of the European Alps, the Valais (mean annual temperature: 9.2°C, annual precipitation sum: 657 mm, both 1961-1990). Tree age is on average 100 years, the top height is 10.8 m and the stand density is 730 stems ha-1 with a basal area of 27.3 m2 ha-1. The forest is described as _Erico Pinetum sylvestris_ and the soil is a shallow pararendzina characterized by low water retention. The experimental site (1.2 ha; 800 trees) is split up into eight plots of 1'000 m2 each. During April-October, irrigation is applied on four randomly selected plots with sprinklers of 1 m height at night using water from an adjacent water channel. The amount of irrigation corresponds to a supplementary rainfall of 700 mm year-1. Trees in the other four plots grow under naturally dry conditions. Soil moisture has been monitored since the beginning of the project at 3 soil depths (10, 20 and 60 cm). The crown condition of each tree is being assessed each year since 2003. Tree measurement data such as diameter at breast height, tree height, and social status were assessed in 2002, 2009 and 2014. The duration of the irrigation experiment is planned for 20 years.

crown-condition

display_name: crown-condition

dbh

display_name: dbh

diameter-at-breast-height

display_name: diameter-at-breast-height

drought

display_name: drought

forest

display_name: forest

irrigation

display_name: irrigation

lwf

display_name: lwf

scots-pine

display_name: scots-pine

swiss-forest-lab

display_name: swiss-forest-lab

tree

display_name: tree

tree-species

display_name: tree-species

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Tree measurements 2002-2016 from the long-term irrigation experiment Pfynwald, Switzerland


maintainer: Anita C. Risch

en: nutrient-network global-change herbivore soil nitrification fertilization mineralization climate grassland nitrogen ammonification

en: Risch et al. 2020 - Raw data for publication "Global impacts of fertilization and herbivore removal on soil net nitrogen mineralization are modulated by local climate and soil properties"

en:
we assessed how the removal of mammalian herbivores (Fence) and fertilization with growth-limiting nutrients (N, P, K, plus nine essential macro- and micronutrients; NPK) individually, and in combination (NPK+Fence), affected potential and realized soil net Nmin across 22 natural and semi-natural grasslands on five continents. Our sites spanned a comprehensive range of climatic and edaphic conditions found across the grassland biome. We focused on grasslands, because they cover 40-50% of the ice-free land surface and provide vital ecosystem functions and services. They are particularly important for forage production and C sequestration. Worldwide, grasslands store approximately 20-30% of the Earth’s terrestrial C, most of it in the soil (Schimel, 1995; White et al., 2000).

Study sites and experimental design
The 22 sites contributing to this project are part of the Nutrient Network Global Research Cooperative (NutNet, https://nutnet.umn.edu/). Mean annual temperature across our 22 sites ranged from -4 to 22°C, mean annual precipitation from 252 to 1,592 mm, and elevations from 6 to 4,261 m above sea level (Fig. 1, Supplementary Table S1). Soil organic C varied from 0.8 to 7.8%, soil total N from 0.1 to 0.6%, and the soil C:N ratio from 9.1 to 21.5. Soil clay content spanned from 3.0 to 35%, and soil pH from 3.4 to 7.6 (Supplementary Table S2). Thus, the sites covered a wide range of environments in which grasslands occur (Fig. 1, Supplementary Table S1 & S2).
At each site, the effects of nutrient addition and herbivore removal were tested via a randomized-block design (Borer et al., 2014; Supplementary Fig. S1a). Three replicate blocks with 10 treatment plots each were established at each site, with the exception of the site at bldr.us, where only two blocks were established (Supplementary Fig. S1a). The 10 plots were randomly assigned to a nutrient or fencing treatment, but only a subset of four plots was used in the current study, each with a different treatment (see below; Supplementary Fig. S1a). All plots were 5 x 5 m and divided into four 2.5 x 2.5 m subplots (Supplementary Fig. S1b). Each subplot was further divided into four 1 x 1 m square sampling plots, one of which was set aside for soil sampling (Borer et al., 2014; Supplementary Fig. S1b). Plots were separated by at least 1 m wide walkways.
In this study, we collected data from the following four treatments: (i) untreated control plots (Control), (ii) herbivore removal plots (Fence), (iii) plots fertilized with N, P, K, plus nine essential macro and micronutrients (NPK), and (iv) plots with simultaneous fertilizer addition and herbivore removal (NPK+Fence; Supplementary Fig. S1a). The number of years of treatment differed among sites (2 – 9 years since start of treatment; Supplementary Table S1). For the nutrient additions, all sites applied 10 g N m-2 yr-1 as time-release urea; 10 g P m-2 yr-1 as triple-super phosphate; 10 g K m-2 yr-1 as potassium sulfate. A micro-nutrient mix (Fe, S, Mg, Mn, Cu, Zn, B, Mo, Ca) was applied at 100 g m-2 together with K in the first year of treatments but not thereafter.
The vertebrate herbivore removal treatment (Fence) was established by fencing two plots, one control and one NPK plot, within each of the blocks (Supplementary Fig. S1a). We designed the fences so that they would effectively exclude aboveground mammalian herbivores with a body mass of over 50 g (Borer et al., 2014). At the majority of sites, the height of the fences was 180 cm, and the fence design included wire mesh (1 cm holes) on the first 90 cm along with a 30 cm outward-facing flange stapled to the ground to exclude burrowing animals; climbing and subterranean animals may potentially still access these plots (Borer et al., 2014). For slight modifications in fence design at a few sites see Supplementary Table S3. While most sites only had native herbivores, a few sites (4) were also grazed by domestic animals (Supplementary Table S1).
Potential and realized soil net N mineralization, ammonification, nitrification and other soil properties
Each site participating in the study received a package containing identical material from the Swiss Federal Institute for Forest, Snow and Landscape Research (WSL) to be used for sampling and on-site N incubations. For the field incubation, we followed the protocol by Risch et al. (2015, 2019). Briefly, we drove a 5 x 15 cm (diameter x depth) steel cylinder 13.5 cm deep into the soil after clipping the vegetation at randomized locations in each plot. The top 1.5 cm of the cylinder remained empty to capture incoming N from run-off or deposition with a polyester mesh bag (mesh-size 250 µm) filled with 13.2 ± 0.9 g of acidic and alkaline exchanger resin (1:1 mixture; ion-exchanger I KA/ion-exchanger III AA, Merck AG, Darmstadt). The bag was fixed in place with a metal Seeger ring (Bruetsch-Rüegger Holding, Urdorf, Switzerland). We then removed 1.5 cm soil at the bottom of the cylinder and placed another resin bag to capture N leached from the soil column. The exchange resin was saturated with H+ and Cl- prior to filling the bags by stirring the mixture in 1.2M HCl for 1 h and then rinsing it with demineralized water until the electrical conductivity of the water reached 5 μS/cm. The cylinders were then re-inserted into the cored hole, level with the soil surface, and incubated for an average of 42 days (range 40 to 57days). The individual site coordinators chose the timing of incubation to start approximately six weeks prior to peak plant biomass production. All incubations were completed between February 2015 and January 2016 accounting for differences in growing season between northern and southern hemispheres. At the end of the incubation, the cylinders were re-collected and immediately shipped to WSL in an insulated box together with cold packs to halt further mineralization. Gloves were worn at all times to avoid contamination of the samples. Upon arrival at WSL, we extracted the resin bags and a 20 g subsample of sieved soil (4 mm) separately in a 100 ml PE-bottle with 80 ml 1 M KCl for 1.5 h on an end-over-end shaker and filtered through ashless folded filter paper (DF 5895 150, ALBET LabScience). We measured NO3- (colorimetrically; Norman & Stucki, 1981) and NH4+concentrations (flow injection analysis; FIAS 300, Perkin Elmer) on these filtrates.
At the start of the field incubation, we additionally collected two soil cores of 5 x 12 cm (diameter x depth) in each sampling plot and composited them to measure potential soil net Nmin, soil chemical and biological properties (see below). We also collected an additional sample (5 x 12 cm) to assess soil physical properties, which remained within the steel cylinder. Both ends were tightly closed with plastic caps. Cores were carefully packed to avoid further disturbance, and together with the composited soil samples, were shipped to the laboratory at WSL within a few days after collection.
From the composited samples, we extracted an equivalent of 20 g dry soil with KCl, as described above, and measured NO3- and NH4+concentrations. Realized soil net Nmin was then calculated as the difference between the inorganic N content of samples collected at the end of the incubation (plus N extracted from the bottom resin bag) and the N content at the beginning of the incubation; values were scaled to represent daily mineralization rates (mg N kg-1soil d-1; Risch et al., 2015). Realized soil net Nmin values represent an average period of 42 days prior to peak biomass, typically the highest period of biological activity, and not the entire year (Risch et al., 2019).
A second subsample of the composited sample was used to determine potential soil net Nmin in the laboratory (Risch et al., 2019). Briefly, we weighed duplicate samples (8 g dry soil) into 50-ml Falcon tubes. Soil moisture was brought to 60% of the field capacity of each plot, the Falcon tubes tightly closed and then incubated at 20°C for 42 days in a dark room. Every week the Falcon tubes were opened and ventilated. At the end of the incubation, the soil samples were extracted the same way as described above and NO3- and NH4+ was determined. Potential soil net Nmin was calculated as the difference between the N content before and after the incubation and scaled to represent daily values (mg N kg-1soil d-1). Using our NO3- and NH4+ measures we also calculated potential and realized soil net nitrification and soil net ammonification to be able to better understand the drivers of fertilization and herbivore removal effects on potential and realized soil net Nmin.
A third subsample of the composite soil sample was sieved (2 mm mesh) and microbial biomass (μg Cmic g-1 soil dry weight) was estimated by measuring the maximal respiratory response to the addition of glucose solution (4 mg glucose per g soil dry weight dissolved in distilled water; substrate-induced respiration method) on approximately 5.5 g of soil (Anderson & Domsch, 1978). The rest of the composited sample was dried at 65°C for 48 h, ground and sieved (2 mm mesh) to assess a series of soil chemical properties (Risch et al., 2019). We measured the percentage of clay as an indicator of soil texture (Gee & Bauder, 1986; Risch et al., 2019).
Statistical analyses
Potential and realized soil net Nmin were square root transformed to account for a highly skewed data distribution (yt = sign(y)*sqrt|y|; negative values in the data set impeded log transformation). To assess treatment effects on potential and realized soil net Nmin, we used linear mixed effects models (LMMs) fitted by maximum likelihood using the lme function from the nlme package (version 3.131.1; Pinheiro et al., 2016), R version 3.6.1; R Foundation for Statistical Computing. Treatment (Control, Fence, NPK, NPK+Fence) was a fixed factor, with site and block as random factors, where block was nested within site. We also tested for effects of time since start of treatments in preliminary analyses by adding total treatment years as an additional fixed factor. We did not find a significant effect of years of treatment, and thus dropped this variable from the models. The LMMs were corrected using varIdent if the homogeneity of variance criterion was not met (Pinheiro et al., 2016). To visualize our results, we calculated treatment effects using Cohens’ d statistic (Cohen, 1977; Koricheva et al., 2013). Note that calculating response ratios (or log response ratios) was not possible with our data, as we have both negative and positive values. We also fitted LMMs for potential and realized soil net ammonification and nitrification to gain more insight into how global change affects the processes underpinning potential and realized soil net Nmin. We also sqrt-transformed (see above) these dependent variables. Treatment was included as a fixed factor with random factors as described above. In addition, we assessed how potential and realized soil net Nmin were related to potential and realized soil net ammonification and nitrification, respectively. For this, we calculated site averages for each treatment separately. We then ran LMMs, with potential and realized soil net Nmin as the dependent variable, potential and realized soil net ammonification/nitrification as the independent ones. Site was included as a random factor.
Based on our previous work (Risch et al., 2019) and the existing literature (Schimel & Bennett, 2004; Liu et al., 2017), we developed a priori causal conceptual models of relationships among treatments, environmental drivers, and potential and realized soil net Nmin (Supplementary Fig. S2) to test with structural equation modelling (SEM) using a d-sep approach (Shipley, 2009; Lefcheck, 2016). The variables included in the model were long-term climatic conditions, specifically, site-level mean annual precipitation (MAP) and temperature of the wettest quarter (T.q.wet), plot-level soil texture (clay content) and soil microbial biomass. Mean annual precipitation and T.q.wet were obtained from WorldClim (Hijmans et al., 2005) (http://www.worldclim.org/) and together with the experimental treatments were predicted to directly affect soil properties and soil net Nmin (Supplementary Fig. S2). Soil clay content was, in turn, predicted to affect microbial biomass and soil net Nmin. Because we determined microbial biomass prior to incubating the samples in the laboratory or field, we assumed that the abundance of these microbes would be responsible for N process rates and not vice versa (Supplementary Fig. S2). We tested our conceptual model (Supplementary Fig. S2) using the piecewiseSEM package (version 2.0.2; Lefcheck, 2016) in R 3.4.0, in which a structured set of linear models are fitted individually. This approach allowed us to account for the nested experimental design, and overcome some of the limitations of standard structural equation models, such as small sample sizes (Shipley, 2009; Lefcheck, 2016). We used the lme function of the nlme package to model response variables, including site as a random factor. Good fit of the SEM was assumed when Fisher’s C values were non-significant (p > 0.05). For all significant interactions between covariates and experimental treatments detected in the SEMs, we calculated treatment effect sizes, i.e. the differences in potential or realized soil net Nmin between Control and treatments (Fence, NPK, NPK+Fence) and plotted these values against the climate or soil covariates. Finally, we fitted LMMs for the soil variables included in our SEMs, with treatment as the fixed factor, and with site and block as random factors, where block was nested within site.

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch Anita C., Zimmermann, Stefan, Moser, Barbara, Schütz, Martin, Hagedorn, Frank, Firn, Jennifer, Fay, Philip A., Adler, Peter B., Biederman, Lori A., Blair, John M., Borer, Elizabeth T., Broadbent, Arthur A.D., Brown, Cynthia S., Cadotte, Marc W., Caldeira, Maria C., Davies, Kendi F., di Virgilio, Augustina, Eisenhauer, Nico, Eskelinen, Anu, Knops, Johannes M.H., MacDougall, Andrew S., McCulley, Rebecca L., Melbourne, Brett A., Moore, Joslin L., Power, Sally A., Prober, Suzanne M., Seabloom, Eric W., Siebert, Julia, Silveira, Maria L. , Speziale, Karina L., Stevens, Carly J., Tognetti, Pedro M., Virtanen, Risto, Yahdjian, Laura, Ochoa-Hueso, Raul (accepted). Global impacts of fertilization and herbivore removal on soil net nitrogen mineralization are modulated by local climate and soil properties. Global Change Biology

Please cite this paper together with the citation for the datafile.

We assessed how the removal of mammalian herbivores (Fence) and fertilization with growth-limiting nutrients (N, P, K, plus nine essential macro- and micronutrients; NPK) individually, and in combination (NPK+Fence), affected potential and realized soil net Nmin across 22 natural and semi-natural grasslands on five continents. Our sites spanned a comprehensive range of climatic and edaphic conditions found across the grassland biome. We focused on grasslands, because they cover 40-50% of the ice-free land surface and provide vital ecosystem functions and services. They are particularly important for forage production and C sequestration. Worldwide, grasslands store approximately 20-30% of the Earth’s terrestrial C, most of it in the soil (Schimel, 1995; White et al., 2000).

ammonification

display_name: ammonification

climate

display_name: climate

fertilization

display_name: fertilization

global-change

display_name: global-change

grassland

display_name: grassland

herbivore

display_name: herbivore

mineralization

display_name: mineralization

nitrification

display_name: nitrification

nitrogen

display_name: nitrogen

nutrient-network

display_name: nutrient-network

soil

display_name: soil

educ

en: Education, culture and sport

en: EnviDat: the Environmental Data Portal

en: Anthropogenic change and soil net N mineralization


intratrait

maintainer: Christian Rixen

title_for_slug: intratrait

en: climate-change plant-traits elevation-range neighbour-interactions elevation-gradient cold-adapted-plants

en: Plant trait data along elevation gradients on mountains

en:
This data set was used to test whether species specialized to high elevations or with narrow elevational ranges show more conservative (i.e. less variable) trait responses across their elevational distribution, or in response to neighbours, than species from lower elevations or with wider elevational ranges. We did so by studying intraspecific trait variation of 66 species along 40 elevational gradients in four countries (Switzerland, Australia, New Zealand, China) in both hemispheres. As an indication of potential neighbour interactions that could drive trait variation, we also analysed plant species’ height ratio, its height relative to its nearest neighbour.
The following traits and parameters were measured and are available in this data set:
As an indication of plant stature, we measured vegetative and generative height, where vegetative height was distance from soil to highest vegetative leaf and generative height was distance to the highest point on the reproductive shoot. As a measure of reproductive investment, we noted the presence of flowers on the randomly chosen individuals (see below). As a measure of individual and genet basal area, we measured individual plant and patch diameters, in two dimensions (along the largest diameter and perpendicular to it). In clonal plant species, plant diameter was equivalent to an individual rosette, whereas patch diameter referred to the whole genet and could represent the size of a tuft, tussock or cushion. For genera with more singular growth forms (e.g., some Gentiana species) plant and patch diameter were the same. The two diameter measurements were made at right angles, allowing estimates of patch and plant areas to be calculated as an ellipse (i.e., area = 0.5 a 0.5 b Π). All traits were measured on ten randomly selected individuals per site. Flower count data was considered in a binary fashion on a per individual basis (because for some species individuals only produce one flower when flowering) so that the presence or absence of flower(s) was a nominal value between 0 and 10 for each species at each site. We then collected at least three leaves (up to 30 for small and light leaves) from each of the first three individuals selected from each species for determination of leaf dry matter content (LDMC) and specific leaf area (SLA). For calculations of LDMC and SLA, fresh leaves were scanned on a flatbed scanner to determine leaf area. Leaves were then weighed on a balance to a precision of +/- 0.001g, prior to being air dried and reweighed with a balance to a precision of +/- 0.0001g. LDMC was calculated by dividing dry leaf mass by fresh leaf mass. SLA was calculated by dividing leaf area by dry leaf mass. Additionally, within an area of 10 cm diameter around the target individual, we determined the tallest neighbouring species and measured its vegetative and generative height, and estimated the percent cover of the target species, other vegetation, rock, and bare soil.
For more details see Rixen et al. 2022, Journal of Ecology.

climate-change

display_name: climate-change

cold-adapted-plants

display_name: cold-adapted-plants

elevation-gradient

display_name: elevation-gradient

elevation-range

display_name: elevation-range

neighbour-interactions

display_name: neighbour-interactions

plant-traits

display_name: plant-traits

en: intratrait


en: complex-terrain high-resolution cosmo-wrf numerical-simulation meteoswiss

en: COSMO-WRF documentation v1.0

en:
Gerber, Franziska; Sharma, Varun (2018). Running COSMO-WRF on very-high resolution over complex terrain. EnviDat. doi:10.16904/envidat.35

Documentation about the procedure to run COSMO-WRF

en: MeteorologicalData

en: Scripts to process meteorological data (see Section 2 in COSMOWRFdocumentation.pdf).

en: WRFrun

en: Scripts to run COSMO-WRF simulation (see Section 6 in COSMOWRFdocumentation.pdf)

en: Postprocessing

en: Postprocessing scripts to map WRF output on swiss coordinates (see Section 7 in COSMOWRFdocumentation.pdf)

en: StaticData

en:
Scripts to process geographical/static data (see Section 3 in COSMOWRFdocumentation.pdf).
- ascii_to_bin_landuse.f90
- ascii_to_bin_soiltype.f90
- ascii_to_bin_topo_wgs84_ws2sf1.f90
- see_slopes.ncl
- soiltype_writing.py
- toposmooth_wgs84_cosmobound.ncl
- write_geogrid.o

en: WPSrun

en: Scripts to run the WRF pre-processing (WPS) for COSMO-WRF simulation (see Section 5 in COSMOWRFdocumentation.pdf)

en: WPSSetup

en: Scripts that need to be changed to compile WPS (see COSMOWRFdocumentation.pdf, Section 4)

en: This is a technical documentation of the procedure to run the Weather Research and Forecasting (WRF) model over complex alpine terrain using Consortium for Small-Scale Modeling (COSMO) reanalysis by the Federal Office of Meteorology and Climatology (MeteoSwiss) as initial and boundary conditions (COMSO-WRF). The setup is adapted for very high resolution simulations based on COSMO-2 (2.2 km resolution) reanalysis. This document gives an overview over steps to setup COSMO-WRF and adaptations needed to run COSMO-WRF. Additionally, the calculation of precipitation rate at a horizontal plane and remapping COSMO-WRF output on Swiss coordinates are documented.

complex-terrain

display_name: complex-terrain

cosmo-wrf

display_name: cosmo-wrf

high-resolution

display_name: high-resolution

meteoswiss

display_name: meteoswiss

numerical-simulation

display_name: numerical-simulation


en: urban-region strategic-plans europe development-priorities spatial-information

en: Planning intentios

en:
The present dataset is part of the report titled Gradinaru S.R., Hersperger A.M., Schmid F. (2021). Deriving Planning Intentions from written planning documents. Report on CONCUR Project- From plans to land change: how strategic spatial planning contributes to the development of urban regions.
The data corresponds to the data collected as part of the DPI Method for deriving all PIs contained in a plan (open coding) as detailed in section 4 of the report. The method involved reading the plans to break down of information in meaningful discrete “incidents” or planning intentions. To identify the planning intentions, the starting points were represented by a) the structuring of the plans in chapters and sub chapters and b) the themes that the plans addressed. Thus, the collected information was not grouped according to pre-defined categories of planning intentions, but rather put together as a list of intentions as revealed by each plan. As a result, we provide, for each case study, a document (named [Urban region name] PI as defined in the plan) which contains:
	Date when the information was filled in.
	Name of the urban region and analysed strategic spatial plan .
	A list of all planning intentions contained in a plan, with each PI being addresses as follows:
	Name of PI as it appears in the plan
	Translated name of the PI (i.e. short name for easy understanding of the meaning)
	Explanation regarding the meaning of the PI
	Why the PI is considered a priority for the urban region
	Spatial information on the PI (text and cartographic representations).
In total, 14 documents are available, one for each case study. Documents contain up to 20 pages of information extracted from the plans together with explanations and notes taken during plan reading.

development-priorities

display_name: development-priorities

europe

display_name: europe

spatial-information

display_name: spatial-information

strategic-plans

display_name: strategic-plans

urban-region

display_name: urban-region

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Planning intentions in strategic plans of European urban regions


high-resolution-climate-data-for-europe

title_for_slug: high-resolution-climate-data-for-europe

en: europe cordex air-temperature precipitation eur11 minimum-temperature daily-climate maximum-temperature

en: CHELSA EUR11 Technical Documentation

en: As the CHELSA project is continuously expanded, certain new parameters, time scales etc. are not included anymore in the original publication (Karger et al. 2017). We are therefore provide this document as a guideline of the current climatic parameters available and will expand it as new parameters or time periods will become available. Please refer to the version history for changes made in the document.

en: Data Access

en:
High-resolution information on climatic conditions is essential to many applications in environmental and ecological sciences. Here we present downscaled climate data for the CORDEX EUR11 domain at a high resolution of 30 arc sec. The temperature algorithm is based on statistical downscaling of atmospheric temperature lapse rates. The precipitation algorithm incorporates orographic predictors including wind fields, valley exposition, and boundary layer height. The resulting data consist of a daily temperature and precipitation timeseries.

The data is distributed under a: Creative Commons: Attribution 4.0 International (CC BY 4.0) license.

air-temperature

display_name: air-temperature

cordex

display_name: cordex

daily-climate

display_name: daily-climate

maximum-temperature

display_name: maximum-temperature

minimum-temperature

display_name: minimum-temperature

precipitation

display_name: precipitation

en: High resolution climate data for Europe


en: digital-planning geoinformation-system swiss-geodata open-source raster-processing qgis-plugin geodata-processing digital-elevation-model cable-yarding seilaplan

en: View video on youtube!

en: DHM-Kacheln zusammenfügen

en:
In order to use the QGIS plugin ‘Seilaplan’ for digital cable line planning, a digital terrain model (DTM) is required. In this tutorial video, we show how to merge multiple DTM raster tiles into one file, using the QGIS tool ‘Virtual Raster’. This simplifies the digital planning of a cable line using the QGIS plugin ‘Seilaplan’. Please note that the tutorial language is German!

Link to Seilaplan website: https://seilaplan.wsl.ch

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Für die Verwendung des QGIS Plugins Seilaplan zur digitalen Seillinienplanung ist ein digitales Höhenmodell (DHM) nötig. In diesem Tutorialvideo zeigen wir, wie man mit dem QGIS-Plugin Virtuelles Raster mehrere DHM-Kacheln zu einem einzigen Rasterfile zusammenfügen und abspeichern kann. Für die Seillinienplanung mit Seilaplan muss nun nur noch eine Datei, mein neues virtuelles Raster, ausgewählt werden.

Link zur Seilaplan-Website: https://seilaplan.wsl.ch

cable-yarding

display_name: cable-yarding

digital-elevation-model

display_name: digital-elevation-model

digital-planning

display_name: digital-planning

geodata-processing

display_name: geodata-processing

geoinformation-system

display_name: geoinformation-system

open-source

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qgis-plugin

display_name: qgis-plugin

raster-processing

display_name: raster-processing

seilaplan

display_name: seilaplan

swiss-geodata

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en: Seilaplan Tutorial: Merge DTM tiles