maintainer: Marco Moretti

en: urbanization beta-diversity biodiversity hymenoptera anthophila community-indices climate resource-availability protected-areas switzerland functional-diversity elevation-gradient predictive-modelling wild-bee

en: Elevation and waterbodies

en: Zip file containing two rasters: the digital elevation model of Switzerland and the waterbodies of Switzerland.

en: Spatial environmental predictors and responses

en:
The .zip file contains the rasters of the environmental predictors and the predicted responses:
-  **Environmental predictors.**:

  -  The raster on the climate contains the PCA axes on the CHELSA variables.

  -  The raster on resource availability contains the PCA axes on plant communities

  -  The raster on land-use contains the land-use composition at 2500 m.

  -  The raster on beekeeping intensity contains thedensity of hives within 2500 m

-  **Responses**:
- The predicted responses without masking the waterbodies (Diversity_stack_revised_Selected_descriptors.tif).
- The predicted responses masking the waterbodies (masked.stack.all.diversity.tiff).

en: Wild bee trait data

en: Text file containing the scores of the 8 used traits. The data originates from the European trait database (compiler: Stuart Roberts; pollinator loss module of the EU- FP6 ALARM project).

en: Deprecated-Predictors

en:
The compress file includes the rster files of the predictors used in the analyses, including the climate, resource availability, land-use and beekeeping intensity metrics.

The raster on the climate contains the PCA axes on the CHELSA variables.
The raster on resource availability contains the PCA axes on plant communities
The raster on land-use contains the land-use composition at 2500 m.
The raster on beekeeping intensity contains thedensity of hives within 2500 m

en: Protected areas

en: Protected areas considered, divided in three groups and rasters: protected areas sensu stricto, protected areas sensu lato and all protected areas

en: Taxonomic and functional metrics in the community plots

en:
Response data used for the modeling.
Lat: latitude community plot
Lon: longitude community plot
Richness: species richness
Shannon: Shannon diversity index
FDis: functional dispersion
TOP: Trait Onion Peeling (functional richness)
TED: Trait Even Distribution (functional evenness)
LCBD_taxo: local community contributions to taxonomic beta diversity
LCBD_fun: local community contributions to functional beta diversity
ITD: community weighted means inter-tegula distance
feeding_specialization: community weighted means feeding specialization
tong_length: community weighted means tongue length
phenostart: community weighted means start of the phenology
phenoduration: community weighted means duration of the phenoloy
cleptoparasite: community weighted means cleptoparasites
belowgound: community weighted means proportion belowground
solitary: community weighted means proportion solitary

en: Variable importance, model evaluation, partial dependence plots

en: The compress file containes a set of txt files with the variable importance, the model evaluation metrics and the partial dependence plots of each of the responses used (alpha and beta taxonomic and functional diversity metrics; community weighted means of 8 functional traits)

en:
Raw data supporting the paper "Countrywide wild bee taxonomic and functional diversity reveal a spatial mismatch between alpha and beta-diversity facets across multiple ecological gradients". It contains taxonomic and functional metrics in 3343 community-plots distributed across Switzerland. The calculated metrics are:
- Alpha taxonomic community metrics: species richness and Shannon diversity
- Alpha functional community metrics: Functional richness (using the Trait Onion Peeling index, TOP), functional eveness (using the Trait Even Distribution index, TED) and the functional dispersion.
- Community weighted means of 8 functional traits
- The local community contributions on the functional and taxonomic beta diversity (LCBD).

The dataset also includes the following:
- The used predictors to model the spatial distribution of the community metrics (climate PCA, vegetation PCA, land-use metrics, beekeeping intensity).
-The three types of protected areas, defined according to the protective measures.
- The model evaluation, variable importance and partial dependece data.

anthophila

display_name: anthophila

beta-diversity

display_name: beta-diversity

biodiversity

display_name: biodiversity

climate

display_name: climate

community-indices

display_name: community-indices

elevation-gradient

display_name: elevation-gradient

functional-diversity

display_name: functional-diversity

hymenoptera

display_name: hymenoptera

predictive-modelling

display_name: predictive-modelling

protected-areas

display_name: protected-areas

resource-availability

display_name: resource-availability

switzerland

display_name: switzerland

urbanization

display_name: urbanization

wild-bee

display_name: wild-bee

en: Data on wild bee taxonomic and functional diversity in Switzerland


maintainer: EnviDat Support

en: detritus bacteria decomposition wolf soil-biodiversity yellowstone biogeochemical-cycling carrion fungi carcass

state: active

type: dataset

en:
Site	ID for different carcasses across the Yellowstone Landscape
Location	Sampling location, either under carcass or control plot
Species	Indicating whether carcass was from bison or elk
Gender	Gener of carcass; F = female, M = male, ? = unknown
Lat	Latitude
Long	Longitude
DSK	Days since kill; in days
Soil.N	Soil N concentration (%)
Soil.C	Soil C concentration (%)
Veg.C	Vegetation C concentration (%); dominant grasses sampled
Veg.N	Vegetation N concentration (%); dominant grasses sampled
Veg.CtoN	Vegetation C to N ratio; dominant grasses sampled
Soil.resp	Soil respiration (g m-2 h-1)
soil.temp	Soil temperature (°C)
Soil.moist	Soil moisture (volumentric; %)
CRR	Cotton rotting rate
bacteria.richness	Bacteria richness
bacteria.diversity	Bacteria diverstiy
fungi.richness	Fungi richness
fungi.diversity	Fungi diversity
bacteria.abundance	Bacteria abundance
fungi.abundance	Fungi abundance

format: XLS

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch, A.C., Frossard, A., Schütz, M., Frey, B., Morris, A.W., Bump, J.K. (accepted) Effects of elk and bison carcasses on soil microbial communities and ecosystem functions in Yellowstone, USA. (accepted). Functional Ecology
doi: ...

Methods
Study area and study sites
This study was conducted in YNP’s Northern Range (NR), located in north-western Wyoming and south-western Montana, USA (~44.9163° N, 110.4169° W). The NR expands over ~1000 km2 and features long cold winters and short dry summers. Grasslands and shrublands dominate the NR that is the home of large migratory herds of bison (winter counts 2017: ~3919 individuals; Geremia, Wallen, & White, 2017) and elk (~5349 individuals) as well as their main predators, approximately five packs of wolves with a total of 33 individuals (Smith et al., 2017). As part of a long-term research program within YNP, wolf predation has been studied since their reintroduction in 1995.
For our study, we received ground-truthed coordinates of bison and elk carcasses from winter 2016/17 (November 2016 through April 2017) from the YNP Wolf Project. Between June 20 and July 1, 2017, we visited 24 carcasses in total. At five sites, we could not sample as the carcasses were no longer found. In total we located remains (hairmats, rumen content, bones, teeth) of 19 adult male and female carcasses (7 bison, 12 elk; Supplementary Table 1). Live body weights of adult bison and elk are approximately 730 kg (male bison), 450 kg (female bison), 330 kg (male elk), and 235 kg (female elk, Meagher, 1973; Quimby & Johnson, 1951).
The kills and subsequent consumption happened between 34 and 173 days prior to our sampling (hereafter “days since kill”, DSK), for which we accounted in our statistics. Note that wolves and other scavengers consumed the soft tissue of the carcasses quickly, hence, there is close to no soft tissue left for decomposition as compared to an intact body left on the soil surface. The 19 carcass sites covered the extent of YNP’s NR, with both bison and elk carcasses showing similar distributions; elevation ranged from 1703 to 2884 m a.s.l. (Supplementary Fig 1 & Supplementary Table 1). The carcasses were all located in grassland or sage-brush shrubland, with or without sparsely scattered trees, and both bison and elk carcasses showed the same distribution of DSK. At each study site, we selected a reference plot (hereafter “control”) that was of comparable size, slope aspect and vegetation to the carcass location (hereafter “carcass”). The control was at least 10 m away (Danell, Berteaux, & Brathen, 2002; Melis et al., 2007) from the carcass itself to ensure the absence of potential direct and indirect carcass effects (paired design; (Bump, Webster, et al., 2009; Bump, Peterson, et al., 2009).

Ecosystem functions and soil properties
We randomly collected 50 g of mineral soil from three locations on both control and carcass plots to a depth of 5 cm with sterile techniques and gently mixed the material to obtain a composite sample. Half the soil sample was immediately bagged in plastic bags (whirl packs), stored in a cooler with ice packs (~5 ºC), sieved (2-mm) and frozen within 4-6 hours of collection to assess soil microbial communities. For this purpose, we extracted total genomic DNA from 0.5 g soil using the PowerSoil DNA Isolation Kit (Qiagen, Hilden, Germany). DNA concentrations were measured using PicoGreen (Molecular Probes, Eugene, OR, USA). PCR amplifications of partial bacterial small-subunit ribosomal RNA genes (region V3–V4 of 16S rRNA) and fungal ribosomal internal transcribed spacers (region ITS2) were performed as described previously (Frey et al., 2016). Each sample consisting of 40 ng DNA was amplified in triplicate and pooled before purification with Agencourt AMPure XP beads (Beckman Colter, Berea, CA, USA) and quantified with the Qubit 2.0 fluorometric system (Life Technologies, Paisley, UK). Amplicons were sent to the Genome Quebec Innovation Center (Montreal, Canada) for barcoding using the Fluidigm Access Array technology and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, CA, USA).
Quality control of bacterial and fungal reads was performed using a customized pipeline (Supplementary Table 2; Frey et al., 2016). Paired-ends reads were matched with USEARCH (Edgar & Flyvbjerg, 2015), substitution errors were corrected using Bayeshammer (Nikolenko, Korobeynikov, & Alekseyev, 2013) and PCR primers were trimmed (allowing for 1 mismatch, read length >300 bp for 16S and >200 bp for ITS primers) using Cutadapt (M. Martin, 2011). Sequences were dereplicated and singleton reads removed prior to clustering into operational taxonomic units (OTUs) at 97% identity using USEARCH (Edgar, 2013). The remaining centroid sequences were tested for the presence of ribosomal signatures using Metaxa2 (Bengtsson-Palme et al., 2015) or ITSx (Bengtsson-Palme et al., 2013). Taxonomic assignments of the OTUs were obtained using Bayesian classifier (Wang, Garrity, Tiedje, & Cole, 2007) with a minimum bootstrap support of 60% implemented in mothur (Schloss et al., 2009) by querying the bacterial and fungal reads against the SILVA Release 128 (Quast et al., 2013) and UNITE 8.0 (Abarenkov et al., 2010) reference databases for 16S and ITS OTUs, respectively.
Abundances of the bacterial 16S rRNA gene and fungal ITS amplicon were determined by quantitative real-time PCR (qPCR) on an ABI7500 Fast Real-Time PCR system (Applied Biosystems, Foster City, CA, USA) as described previously (Frossard et al., 2018). The same primers (without barcodes) and cycling conditions as for the sequencing approach were used for the 16S and ITS qPCR. Three standard curves per target region were obtained using tenfold serial dilutions of plasmids generated from cloned targets (Frey, Niklaus, Kremer, Lüscher, & Zimmermann, 2011). Data were converted to represent mean copy number of targets per gram of soil (dry weight).
The other half of the soil sample was bagged in paper, dried to constant weight at 60°C, passed through a 2 mm sieve and analyzed for total C and N concentration with a CE Instruments NC 2100 soil analyzer (CE Elantech Inc., Lakewood NJ, USA). We also collected 20 mature and undamaged leaves of the dominant grass species growing on control and carcass sites, but taxa were not recorded. The plant material was dried at 60°C, finely ground till homogenized and also analyzed to obtain total C and N concentrations. Soil temperature (10 cm depth) was measured with a waterproof digital thermometer (Barnstead International, Dubuque IA, USA) at three locations each at the control and carcass site. Soil moisture (0 – 10 cm depth) was measured with time domain reflectometry (Field-Scout TDR-100; Spectrum Technologies, Plainfield IL, USA) at five randomly chosen points on control and carcass sites. We measured soil respiration at five randomly chosen points at both control and carcass sites with a PP-Systems SRC-1 soil respiration chamber (closed circuit) attached to a PP-Systems EGM-4 infrared gas analyzer (PP-Systems, Amesbury, MA, USA). For each measurement the soil chamber (15 cm high; 10 cm diameter) was tightly placed on the soil surface, after clipping plants to avoid measuring plant respiration or photosynthesis. Measurements were conducted over 120 s.
In addition, we assessed the decomposition rates of standardized OM using the cotton strip assay (Latter & Howson, 1977; Latter & Walton, 1988). Cotton cloth tensile strength loss (CTSL) is a measure of decomposition, and an index to express the combined effect of soil microclimatic, physical, chemical and biological properties on decomposition while accounting for OM quality (Latter & Walton, 1988; Risch, Jurgensen, & Frank, 2007; Withington & Sanford Jr., 2007). We placed five 20 cm wide x 13 cm long sheets of 100% unbleached cotton cloth (American Type SM 1/18’’, Warp: 34/1, Weft: 20/1, Weave plain, 29.5 picks/cm warp, 22 picks/cm weft, 237 g/m2; Daniel Jenny & Co., Switzerland;) at each carcass and control site vertically into the soil by making slits with a flat spade to a depth of 12 cm. We inserted each cloth with the spade, and then pushed the slit closed to assure tight contact with the soil. The cloths were retrieved after 18 to 27 days. After retrieval, the cloths were air-dried, remaining soil gently removed by hand, and 1.5 cm wide strips were cut at the 3.5-5.0 cm (top) and the 9-10.5 cm (bottom) soil depth. The strips were equilibrated at 50 % relative humidity and 20°C for 48 hours (climate chamber) prior to strength testing (Scanpro Awetron TH-1 tensile strength tester; AB Lorentzen and Wettre, Kista, Sweden). Cotton rotting rate (CRR) = (CTScontrol - CTSfinal/CTSfinal)1/3 * (365/t), where CTScontrol is the cotton tensile strength of a control cloth and CTSfinal the cotton tensile strength of the incubated sample, t is the incubation period in days. Control cloths were inserted into the ground and immediately retrieved to account for tensile strength loss associated with cloth insertion. We averaged the CRR of top and bottom strips for further analyses as no difference was found between the two. All sampling and cloth insertion took place between June 20 and July 1, 2017, cloths were retrieved between July 17 and 20, 2017. Soil respiration, average CRR, vegetation N concentration and vegetation C:N ratio are defined as ecosystem functions, soil C and N concentration, soil temperature and moisture as soil abiotic properties, and bacterial and fungal richness (number of taxa), diversity (Shannon) and abundance as soil biotic properties.

Statistical analyses
Univariate analyses for ecosystem functions, soil biotic and abiotic properties
We tested whether individual ecosystem functions, soil biotic and abiotic properties differed between carcass and control (“Location”), bison and elk (“Species”) and days since kill (“DSK”). For this purpose, we used linear mixed effect models (LMM, “nlme” package v 3.1 – 131.1 in R v 3.4.4; Pinheiro, Bates, DebRoy, & Sarkar, 2018; R Core Team, 2019) with Location, Species, Location x Species and DSK as fixed effects. Site was included as random effect to account for the paired design. We developed a separate model for all dependent variables. All but bacterial richness, fungal richness, fungal diversity and vegetation N concentration were natural-log transformed to meet model assumptions. For each LMM, we calculated contrasts to assess the specific comparisons we were interested in with the “lsmeans” package v 2.27-62 (Lenth & Love, 2018): 1) carcass vs control, 2) carcass bison vs control bison, and 3) carcass elk vs control elk. We also tested whether we had differences between bison and elk carcasses or the sites where bison and elk were killed and included contrasts 4) carcass bison vs carcass elk and 5) control bison vs control elk.
We calculated the log response ratio (LRR = ln[carcass/control]) to obtain carcass effects for all variables for both species separately. LRR < 0 indicates higher value at control compared to carcass, LRR > 0 indicates higher values at carcass compared control. We used LRRs for visualization and to assess spatial patterns in carcass effects across YNP. For this purpose we calculated the Moran’s I statistic for each ecosystem function, soil biotic and abiotic property based on a latitude-longitude matrix with the “moran.test” function in the “spdep” package version 1.1-3 (Bivand et al., 2019).
Multivariate analyses
Rare OTUs, defined as OTUs with a low abundance of reads, were retained in multivariate methods because they only marginally influence these analyses (Gobet, Quince, & Ramette, 2010). Bray–Curtis dissimilarity matrices were generated based on square-root-transformed matrices. We used Principal Coordinate Analyses (PCoA) to assess how soil bacterial and fungal communities differed between control and carcass of bison and elk (“vegan” package v 2.5-4, Oksanen et al., 2019). We then extracted PCoA axes scores 1 and 2 and used LMM (“nlme” package) with Location, Species, Location x Species and DSK as fixed effects. Site was, again, included as random effect. We again calculated the contrasts as described above using the “lsmeans” package. We also assessed how ecosystem functions, and soil abiotic and biotic properties were related to the soil bacteria and fungi community structure associated with bison and elk control and carcasses using the “envfit” function in the “vegan” package (Oksanen et al., 2019).
Indicator species analyses were performed using the multipatt function implemented in the “indicspecies” package version 1.7.6 with 100000 permutations (De Caceres & Jansen, 2016). This step allowed to identify OTUs that led to changes in multivariate patterns between control and carcass of both bison and elk separately (De Cáceres, Legendre, & Moretti, 2010). The multipatt function uses a point biserial correlation coefficient statistical test. Indicator OTUs were defined as bacterial and fungal OTUs with more than 50 sequences, i.e., removing rare taxa and taxa with low abundances containing little indicator information (Rime et al., 2015) and that were significantly correlated with Location (p < 0.05, correlation coefficient > 0.3). A heatmap of these OTUs were generated with the vegan and ggplot2 packages. The indicator analyses were performed in R version 3.3.3 (R Core Team, 2017).

References
Abarenkov, K., Henrik Nilsson, R., Larsson, K.-H., Alexander, I. J., Eberhardt, U., Erland, S., … Kõljalg, U. (2010). The UNITE database for molecular identification of fungi – recent updates and future perspectives. New Phytologist, 186(2), 281–285. doi:10.1111/j.1469-8137.2009.03160.x
Bengtsson-Palme, J., Hartmann, M., Eriksson, K. M., Pal, C., Thorell, K., Larsson, D. G. J., & Nilsson, R. H. (2015). metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data. Molecular Ecology Resources, 15(6), 1403–1414. doi:10.1111/1755-0998.12399
Bengtsson-Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., … Nilsson, R. H. (2013). Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in Ecology and Evolution, 4(10), 914–919. doi:10.1111/2041-210X.12073
Bivand, R., Altman, M., Anselin, L., Assuncao, R., Berke, O., Blanchet, G., … Yu, D. (2019). spdep: Spatial dependence, weighthing schemes, statistics. R package version 1.1-3.
Bump, J. K., Peterson, R. O., & Vucetich, J. A. (2009). Wolves modulate soil nutrient heterogeneity and foliar nitrogen by configuring the distribution of ungulate carcasses. Ecology, 90(11), 3159–3167.
Bump, J. K., Webster, C. R., Vucetich, J. A., Peterson, R. O., Shields, J. M., & Powers, M. D. (2009). Ungulate carcasses perforate ecological filters and create biogeochemical hotspots in forest herbaceous layers allowing trees a competitive advantage. Ecosystems, 12(6), 996–1007. doi:10.1007/s10021-009-9274-0
Danell, K., Berteaux, D., & Brathen, K. A. (2002). Effect of muskox carcasses on nitrogen concentration in tundra vegetation. Arctic, 55(4), 389392.
De Caceres, M., & Jansen, F. (2016). indicspecies: relationship between species and groups of species. R package version 1.7.6.
De Cáceres, M., Legendre, P., & Moretti, M. (2010). Improving indicator species analysis by combining groups of sites. Oikos, 119(10), 1674–1684. doi:10.1111/j.1600-0706.2010.18334.x
Edgar, R. C. (2013). UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10, 996.
Edgar, R. C., & Flyvbjerg, H. (2015). Error filtering, pair assembly and error correction for next-generation sequencing reads. Bioinformatics, 31(21), 3476–3482. doi:10.1093/bioinformatics/btv401
Frey, B., Niklaus, P. A., Kremer, J., Lüscher, P., & Zimmermann, S. (2011). Heavy-machinery traffic impacts methane emissions as well as methanogen abundance and community structure in oxic forest soils. Applied and Environmental Microbiology, 77(17), 6060–6068. doi:10.1128/AEM.05206-11
Frey, B., Rime, T., Phillips, M., Stierli, B., Hajdas, I., Widmer, F., & Hartmann, M. (2016). Microbial diversity in European alpine permafrost and active layers. FEMS Microbial Ecology, 92(3), fiw018.
Frossard, A., Donhauser, J., Mestrot, A., Gygax, S., Bååth, E., & Frey, B. (2018). Long- and short-term effects of mercury pollution on the soil microbiome. Soil Biology and Biochemistry, 120, 191–199. doi:https://doi.org/10.1016/j.soilbio.2018.01.028
Geremia, C., Wallen, R., & White, P. J. (2017). Status report of the Yellowstone bison population, September 2017. Yellowstone National Park, Mammoth, WY, USA: National Park Service, Yellowstone Center for Resources.
Gobet, A., Quince, C., & Ramette, A. (2010). Multivariate cutoff level analysis (MultiCoLA) of large community data sets. Nucleic Acids Research, 38(15), e155–e155. doi:10.1093/nar/gkq545
Latter, P., & Howson, G. (1977). The use of cotton strips to indicate cellulose decomposition in the field. Pedobiologia, (17), 145–155.
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Melis, C., Selva, N., Teurlings, I., Skarpe, C., Linnell, J. D. C., & Andersen, R. (2007). Soil and vegetation nutrient response to bison carcasses in Białowieża Primeval Forest, Poland. Ecological Research, 22(5), 807–813. doi:10.1007/s11284-006-0321-4
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Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., … Wagner, H. H. (2019). vegan: community ecology package. R package version 2.5-4.
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Rime, T., Hartmann, M., Brunner, I., Widmer, F., Zeyer, J., & Frey, B. (2015). Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield. Molecular Ecology, 24(5), 1091–1108. doi:10.1111/mec.13051
Risch, A. C., Jurgensen, M. F., & Frank, D. A. (2007). Effects of grazing and soil micro-climate on decomposition rates in a spatio-temporally heterogeneous grassland. Plant and Soil, 298(1–2), 191–201. doi:10.1007/s11104-007-9354-x
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., … Weber, C. F. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology, 75(23), 7537–7541. doi:10.1128/AEM.01541-09
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Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73(16), 5261–5267. doi:10.1128/AEM.00062-07
Withington, C., & Sanford Jr., R. (2007). Decomposition rates of buried substances increase with altitude in a forest-alpine tundra ecotone. Soil Biology and Biochemistry, (39), 68–75.

Please cite this paper together with the citation for the datafile.

bacteria

display_name: bacteria

biogeochemical-cycling

display_name: biogeochemical-cycling

carcass

display_name: carcass

carrion

display_name: carrion

decomposition

display_name: decomposition

detritus

display_name: detritus

fungi

display_name: fungi

soil-biodiversity

display_name: soil-biodiversity

wolf

display_name: wolf

yellowstone

display_name: yellowstone

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Elk and bison carcasses in Yellowstone, USA


en: nocturnal-fauna flying-arthropods chiroptera zurich paris urban-biodiversity antwerp urbanisation

en: BIOVEINS raw bat data.csv

media_type: text/csv

en: Raw bat identification data from which the analysis data were derived

format: CSV

en: BIOVEINS raw bat explanatory data.csv

en: Explanation for column headers in file 'BIOVEINS raw bat data.csv'

en: Variable description

media_type: text/plain

en: Tab-delimited file containing names and description of data contained in the tab-delimited data file 'BatsInsectsSites_Date.txt'.

format: TXT

en: Bats Insects Sites dataset

en: Tab-delimited data file containing data analysed. First row is column header. Column headers are described in tab-delimited file 'Variable_description.txt"

en: Animal biodiversity in cities is generally expected to be uniformly reduced, but recent studies show that this is modulated by the composition and configuration of Urban Green Areas (UGAs). UGAs represent a heterogeneous network of vegetated spaces in urban settings that have repeatedly shown to support a significant part of native diurnal animal biodiversity. However, nocturnal taxa have so far been understudied, constraining our understanding of the role of UGAs on maintaining ecological connectivity and enhancing overall biodiversity. We present a well-replicated multi-city study on the factors driving bat and nocturnal insect biodiversity in three European cities. To achieve this, we sampled bats with ultrasound recorders and flying insects with light traps during the summer of 2018. Results showed a greater abundance and diversity of bats and nocturnal insects in the city of Zurich, followed by Antwerp and Paris. We identified artificial lighting in the UGA to lower bat diversity by probably filtering out light-sensitive species. We also found a negative correlation between both bat activity and diversity and insect abundance, suggesting a top-down control. An in-depth analysis of the Zurich data revealed divergent responses of the nocturnal fauna to landscape variables, while pointing out a bottom-up control of insect diversity on bats. Thus, to effectively preserve biodiversity in urban environments, UGAs management decisions should take into account the combined ecological needs of bats and nocturnal insects and consider the specific spatial topology of UGAs in each city.

antwerp

display_name: antwerp

chiroptera

display_name: chiroptera

flying-arthropods

display_name: flying-arthropods

nocturnal-fauna

display_name: nocturnal-fauna

paris

display_name: paris

urban-biodiversity

display_name: urban-biodiversity

urbanisation

display_name: urbanisation

zurich

display_name: zurich

en: Bats and nocturnal insects in urban green areas


en: beech drought dieback fagus-sylvatica switzerland tree-ring forest

en: Tree-ring data of European beech with premature leaf discoloration in 2018 and beech with normal leaf fall (.RWL)

en: Tree-ring data of the selected beech trees in rwl-format.

format: SERVICE

en: Tree-ring data of European beech with premature leaf discoloration in 2018 and beech with normal leaf fall (.CSV)

en: Tree-ring data of the selected trees as .csv

en: Tree information

en: Table giving tree location, diameter at breast height and mortality status.

en: Additional information to data

en: Additional information to the data explaining data collection and variables.

en:
Tree-ring data and tree location from 470 European beech trees (Fagus sylvatica L.) located in the northern part of Switzerland. 278 trees showed drought-induced premature leaf discoloration and shedding in summer 2018 and 192 showed normal leaf fall. The trees were selected from the "1000-Beech-Project" published by Frei et al. 2022 and the data was analyzed in Neycken et al 2023 (in preparation). The corresponding crown data are archived in the EnviDat data portal https://doi.org/10.16904/envidat.422 (Frei et al. 2023). All other data generated during and/or analyzed during the current study are available from the corresponding author upon reasonable request.

Publications related to original data set and crown data:

Wohlgemuth, T., Kistler, M., Aymon, C., Hagedorn, F., Gessler, A., Gossner, M.M., Queloz, V., Vögtli, I., Wasem, U., Vitasse, Y., Rigling, A., 2020. Früher Laubfall der Buche während der Sommertrockenheit 2018: Resistenz oder Schwächesymptom? Schweizerische Zeitschrift fur Forstwesen 171, 257–269. https://doi.org/10.3188/szf.2020.0257

Frei, E.R., Gossner, M.M., Vitasse, Y., Queloz, V., Dubach, V., Gessler, A., Ginzler, C., Hagedorn, F., Meusburger, K., Moor, M., Samblás Vives, E., Rigling, A., Uitentuis, I., von Arx, G., Wohlgemuth, T., 2022. European beech dieback after premature leaf senescence during the 2018 drought in northern Switzerland. Plant Biol J 24, 1132–1145. https://doi.org/10.1111/plb.13467

Publication related to tree-ring data and growth analysis:
Neycken et al 2023 (in preparation)

beech

display_name: beech

dieback

display_name: dieback

drought

display_name: drought

fagus-sylvatica

display_name: fagus-sylvatica

forest

display_name: forest

switzerland

display_name: switzerland

tree-ring

display_name: tree-ring


ceilometer-klosters

title_for_slug: ceilometer-klosters

en: ceilometer vertical-visibility cloud-base-height raclets klosters

en: Ceilometer data Klosters

en: Ceilometer installed at Klosters measuring cloud base height, cloud cover and backscatter profile. The time resolution is 30 seconds, with time given in number of days from January 0, 0000, UTC. More information on the variables in the manufacturer manual.

en: Cloud base height (m) and vertical visibility (m) were measured with the VAISALA Ceilometer CL31 in Klosters (LON: 9.880413, LAT: 46.869019). The CL31 is an instrument with constant reliability for all weather conditions and simultaneous detection of three cloud layers in heights up to 7.6 km.

ceilometer

display_name: ceilometer

cloud-base-height

display_name: cloud-base-height

klosters

display_name: klosters

raclets

display_name: raclets

vertical-visibility

display_name: vertical-visibility

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Ceilometer Klosters


causal-effect-of-mfoz

title_for_slug: causal-effect-of-mfoz

en: propensity-score-matching selection-bias fujian-province causality the-major-function-oriented-zone built-up-land-change

en: Data and Stata code for repeating the results

media_type: application/zip

en:
Data.xlsx is the variables of 952 townships
Table 1-2 NN(1-1)_noreplace_caliper(0.01).do is STATA code to produce the results in Table 1 and 2
Figure 5 Distribution of the propensity scores.R is R code rto produce Figure 5
Figure 5 Standard mean difference.R is R code rto produce Figure 5

format: ZIP

en:
Title: Closer to causality: How effective is spatial planning in governing built-up land expansion in Fujian Province, China?

Research objective: The Major Function Oriented Zone (MFOZ), the first strategic spatial plan in China, is developed to achieve a coordinated regional development, through spatial regulation and zoning of development. The MFOZ he MFOZ divided land into four major function-oriented zones: The development-optimized zone, the development-prioritised zone, the development-restricted zone, and the development-prohibited zone. We used propensity score marching to evaluate the effect of the MFOZ on built-up land expansion in Fujian Province over three time intervals (2013–2015, 2013–2018 and 2013–2020).

Data: Data.xlsx contains the variables of 954 towns in Fujian Province.
Town_ID is the town unique ID;
County_ID is the county unique ID;
City_ID is the city unique ID;
MFOZ is the the development-prioritised zone and the development-restricted zone (The development-optimized zone and the development-prohibited zone are excluded);
Builtup_13_15 is the built-up land expansion from 2013 to 2015;
Builtup_13_18 is the built-up land expansion from 2013 to 2018;
Builtup_13_20 is the built-up land expansion from 2013 to 2020;
Dis2water is the Euclidean distance from the town to the nearest waterbody;
Slope is the the average slope within the town;
GDP is the average GDP in 2010 within the town;
Pop is the average population in 2010 within the town;
Road is the average population in 2010 within the town;
Dis2city is the Euclidean distance from the town to the nearest prefectural city centre;
Nei_Arable, Nei_Forest, and Nei_Built.up are the area of arable land, forest land, and built-up land neighbouring town i in 2010.

Method: we used the propensity score matching to compare the changes in the amount of built-up land in the towns of the development-prioritised zone with the matched towns of the development-restricted zone. Additionally, we used three evaluation intervals (2013–2015, 2013–2018 and 2013–2020) to evaluate temporal variation in the causal effect of the MFOZ on built-up land expansion.

built-up-land-change

display_name: built-up-land-change

causality

display_name: causality

fujian-province

display_name: fujian-province

propensity-score-matching

display_name: propensity-score-matching

selection-bias

display_name: selection-bias

the-major-function-oriented-zone

display_name: the-major-function-oriented-zone

en: Causal effect of MFOZ


total-stem-number

title_for_slug: total-stem-number

en:
Number of stems of all living and dead trees and shrubs starting at 12 cm dbh.

Citation:
 > _Abegg, M.; Brändli, U.-B.; Cioldi, F.; Fischer, C.; Herold-Bonardi, A.; Huber M.; Keller, M.; Meile, R.; Rösler, E.; Speich, S.; Traub, B.; Vidondo, B. (2014). Fourth national forest inventory - result tables and maps on the Internet for the NFI 2009-2013 (NFI4b). [Published online 06.11.2014] Available from World Wide Web http://www.lfi.ch/resultate/ Birmensdorf, Swiss Federal Research Institute WSL. [doi:10.21258/1057112](https://doi.org/10.21258/1057112)_

accessible-forest-without-shrub-forest

display_name: accessible-forest-without-shrub-forest

altitudinal-vegetation-zone

display_name: altitudinal-vegetation-zone

biogeographical-region

display_name: biogeographical-region

canton

display_name: canton

conifers-broadleaves

display_name: conifers-broadleaves

degree-of-damage

display_name: degree-of-damage

economic-region

display_name: economic-region

giants

display_name: giants

lower-higher-altitudinal-zones

display_name: lower-higher-altitudinal-zones

main-tree-species

display_name: main-tree-species

ownership

display_name: ownership

production-region

display_name: production-region

protection-forest-region

display_name: protection-forest-region

total-stem-number

display_name: total-stem-number

tree-state-alive-dead

display_name: tree-state-alive-dead

tree-status

display_name: tree-status

en: Total stem number


en: precipitation swiss-forest-lab climate-change meteo par meteorology relative-humidity long-term wind-speed temperature

en: Forest station data (NEB)

en: Data file.

mimetype: text/csv

en: Site photo of the field station (NEF)

en: Site photo of the field station from the side.

mimetype: image/jpeg

en: Site photo of the forest station (NEB)

en: Site photo of the forest station from below (viewing upwards the slope).

en: Field station data (NEF)

en: Data plot of the field station (NEF)

media_type: application/pdf

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

format: PDF

mimetype: application/pdf

en: Data plot of the forest station (NEB)

en: Site aerial photo (Neunkirch)

en: Site aerial photo from both Neunkirch stations. Source: Google. 2016. Site aerial photo from both Neunkirch stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Neunkirch in Switzerland where one station is located within a natural deciduous forest stand (NEB) with European beech (_Fagus sylvatica_; 160 yrs), sycamore maple (_Acer pseudoplatanus_; 160 yrs) and lime trees (_Tilia sp._; 110 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, NEF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Neunkirch is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Neunkirch, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


en: depth-of-snowfall meteo-station climate-change-impact swiss-alps ground-temperature

en: GenPSUm

en:
GenPSUm contains Files to get the complete precipitation set:

1. MeteoData.ini: Ini file for MeteoIO to get the met. input data. It has to be run two times, to get prec. Data from Imis 	stations and from ANETZ regressions.

2 GenPSUM.ini: Inifile for Snowpack (in research mode), to get winter precipitation calculated by snowpack out of the snow hight measurements.
	In:_sno contain the soil profils for the station
	In_met contains the meterological input data. It's from the data base and MeteoData.ini is used to get it.

3. The folder R_programms contains the R sripts to generate the precipitation data set, it reads in IMIS, ANETZ and SNOWPACK precipi and makes one complet data set out of it. (it contains the function- script plus a script to use the function)

en: SNOWPACK climate change simulation files

en: This folder contains SNOWPACK INI-files for snowpack, soil profiles, and input data for climate change modeling.

en: R-Script

en: The Folder R- Script contains, the R files to create the Climate Change input and the Data for the WFJ- Modeling.

en: Precipitation datasets

en:
This folder contains 16 ideal precipitation data sets for IMIS stations.

*Updated documentation 24 August 2020:*

1. Datasets have been filtered for unphysical values using a MeteoIO min/max tool, however spikes still exist that pass this filter yet appear to be outliers, no further manual filtering was applied.
2. Data prior to 2009 can have large data gaps in certain stations. This is documented in the accompanying publication and was not used for simulations.
3. GUT2 was erroneously filtered during summer periods. This does not affect published snow modelling results but summer (Jun-Oct) values of 8.25 should not be used and filtered prior to use. This affects 4759 summer values or 1.2% of the time-series.

en:
This dataset includes all data and simulation files presented in the publication: Bender et al. 2020. Changes in climatology, snow cover and ground temperatures at high alpine locations, DOI: 10.3389/feart.2020.00100.

This includes:

* meteorological forcing,
* climate change timeries and
* simulation files together with
* snow depth
* ground temperature

Please refer to the following publication for further details which should be cited when using this dataset:

Bender et al. 2020. Changes in climatology, snow cover and ground temperatures at high alpine locations, DOI: 10.3389/feart.2020.00100.

climate-change-impact

display_name: climate-change-impact

depth-of-snowfall

display_name: depth-of-snowfall

ground-temperature

display_name: ground-temperature

meteo-station

display_name: meteo-station

swiss-alps

display_name: swiss-alps

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Changes in climatology, snow cover and ground temperatures at high alpine locations in Switzerland (Bender et al. 2020)


en: wetlands switzerland environmental---history ecology environmental--policy historical-carthography

en: Wetlands 1850 - 2010 (shapefiles)

en:
 History of wetlands - GIS-Layers
 Location of wetlands based on signatures in topographic maps
* Basis 1850: original measuring table sheets Dufour created between the years 1834 and 1863.
* Basis 1900/ Basis 1950: The Siegfried maps were updated and published at regular intervals between 1870 and 1949. This long period of time made it possible to reconstruct wetlands for two periods based on the Siegfried Maps: the first edition (hereinafter referred to as "1900") and the last edition ("1950").
* Basis 2010: Map sheets from the National Map from 2006 to 2011 were used for the most recent time period of the reconstruction.
 Location of wetlands due to reconstructions
The reconstruction **must not** be interpreted in the sense of a surface-accurate separation, but shows without claim to location accuracy the approximate extent of the areas that would have corresponded to the mapping criteria for wetlands used in today's topographic maps around 1850, 1900 and 1950. The basics can be found in Stuber & Bürgi 2019, chapter 5.4.

mimetype: application/zip

en:
Naturally, large parts of the Swiss Plateau are characterised by wetlands
and meandering rivers. That this is no longer the case today is the result
of centuries of efforts to obtain dry land. But how did this process take
place? What were the relevant actors and what were their motivations? And
what can be said about the ecological consequences of this development?

In a research project on the history of wetlands in Switzerland since 1700,
we conducted (a) a historical analysis of the development of land use in
wetlands and the actors involved, (b) a historical-cartographic
reconstruction of wetland extent since 1850 and (c) an evaluation of
ecological effects of changes in wetlands on various organisms groups.

The series of GIS layers on wetland history stem from the second part of
the project. The area reconstruction is based on digitized and homogenized
signatures from national map series, as they have been available since
about 1850. Details about the digitalization process and the homogenization
procedures applied ("Rekonstruktionen") are included in Stuber & Bürgi
2019.

Book Citation:
 > Stuber M, Bürgi M (2019) Vom «eroberten Land» zum Renaturierungsprojekt. Geschichte der Feuchtgebiete in der Schweiz seit 1700. "Bristol Schriftenreihe", Band 59. Haupt Verlag, Bern, Stuttgart, Wien. 262 Seiten.

ecology

display_name: ecology

environmental---history

display_name: environmental---history

environmental--policy

display_name: environmental--policy

historical-carthography

display_name: historical-carthography

switzerland

display_name: switzerland

wetlands

display_name: wetlands

en: History of wetlands in Switzerland since 1850


en: multilocus-genotypes biological-control simple-sequence-repeats trichopria-drosophilae population-genetics drosophila-suzukii nuclear-microsatellite-markers switzerland

en: Table comprising all pertinent information for multiplex PCRs of species-specific nuclear microsatellite makers for Trichopria drosophilae, comprising all 21 newly developed markers, details on full sequences with GenBank accession numbers, primer sequences (including labeling and pig-tails), and repeat motives. PCRs with respective annealing temperatures (AnnealingTemp) refer to Type-It Multiplex PCR Kit (Qiagen, Hilden, Germany).

en: Multilocus genotypes (biallelic coding for 21 nuclear microsatellites) of Trichopria drosophilae described in Gugerli et al. Agrarforschung Schweiz 2019. Missing data denoted as '999'. Population codes (PopNo) are the following: 1, Vezia; 3, Contone ; 5, Davesco; 6, Corteglia; 7, Mezzana; 8, Stabio; 9, Gordola; 10, Sementina; 12, Brusata di Novazzano; 14, Monteggio; 16, Giubiasco; 17, ComoBP; 18, VD; 19, Weil_D; 20, Dossenheim; 21, BioPlanet_Como. Coordinates (CoordCH_E, CoordCH_N) refer to the Swiss coordinates system CH1903.

en:
 Nuclear microsatellite markers and genotype data for _Trichopria ddrosophilae_

This data set comprises (i) the characteristics of a set of 21 species-specific nuclear microsatellites for PCR amplification in _Trichopria drosophilae_ (ii) and genotype data for samples collected in southern Switzerland (Canton of Ticino), with few reference samples from Canton of Vaud, southern Germany, and northern Italy (lab-reared population).
Markers were developed by Ecogenics GmbH, Balgach (Switzerland), using MiSeq Nano 2x250 v2 format (on a mix of 10 individuals). Multiplex PCR assays for multilocus genotyping were established by Ecological Genetics (WSL Birmensdorf), and population genetic analyses are found in Gugerli et al., Agrarforschung Schweiz 2019.

biological-control

display_name: biological-control

drosophila-suzukii

display_name: drosophila-suzukii

multilocus-genotypes

display_name: multilocus-genotypes

nuclear-microsatellite-markers

display_name: nuclear-microsatellite-markers

population-genetics

display_name: population-genetics

simple-sequence-repeats

display_name: simple-sequence-repeats

trichopria-drosophilae

display_name: trichopria-drosophilae

en: Nuclear microsatellite markers for Trichopria drosophilae, parasitoid wasp on Drosophila suzukii


en: forest climate-change-impact hydrology forest-dynamics modeling

en: FORHYCS v 1.0.0 model code (28-10-2019)

en: Model code for FORHYCS as described in the Speich et al. discussion paper in GMDD. Includes code for the parent models PREVAH and TreeMig, as well as the new interface routines and output modules.

en: Link to FORHYCS in Github

en: Scripts and sample datasets v. 1.0.0

en: Scripts and sample files for the documentation of FORHYCS (version 1.0.0)

en: Documentation

en: Technical documentation for the FORHYCS model. Includes an overview of the model code; changes from the parent models PREVAH and TreeMig; a description of the file format for grid inputs/outputs and a description of the file structure on a HPC cluster.

en:
Model code, technical documentation and auxiliary files for the dynamic ecohydrological model FORHYCS (FORests and HYdrology under Climate change in Switzerland). FORHYCS combines two pre-existing models, the hydrological model PREVAH and the forest landscape model TreeMig.

License: GPL v3

climate-change-impact

display_name: climate-change-impact

forest

display_name: forest

forest-dynamics

display_name: forest-dynamics

hydrology

display_name: hydrology

modeling

display_name: modeling

en: FORHYCS v. 1.0.0 model code


en: snow-water-equivalent snow-climatology snow-cover-fraction operational-snow-hydrological-service snow-melt

en: Data package

en: This dataset comprises the climatology on gridded data of snow water equivalent and snow melt runoff spanning 1998-2022, with a spatial resolution of 1 km and daily temporal resolution. This data was produced with the conceptual OSHD model (Temperature Index Model).

operational-snow-hydrological-service

display_name: operational-snow-hydrological-service

snow-climatology

display_name: snow-climatology

snow-cover-fraction

display_name: snow-cover-fraction

snow-melt

display_name: snow-melt

snow-water-equivalent

display_name: snow-water-equivalent

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Climatological snow data since 1998, OSHD


en: protection-forest extreme-events drought forest-fire bark-beetles compound-events natural-hazards protective-effect

en: Case study website

media_type: text/html

en: Page of the case study on the project website. It includes figures fo all questions of the survey and additional synthesis graphs.

format: HTML

en: Factsheet summarising the key results of the study (in German).

en:
This file contains the anonymous answers to the survey for the case study in the protective forest, Val Mesolcina, GR, Switzerland within the BAFU Project "Wenn Risiken kumulieren - Analyse und Umgang mit unerwarteten Ereignissen und kombinierten Risiken".
The survey consists of two parts, based on different concepts: "top-down" and "bottom-up". Answers for both concepts are available in two different worksheets within the Excel file.

en: Factsheet summarising the methods used in this project (in German).

en: Factsheet summarising the key results of the study (in French).

en: Conclusions and recommendations of the project (in German).

en: Description of the study site, extreme event (trigger event) and informations about the survey.

en: Factsheet summarising the key results of the study (in Italian).

en:
This dataset contains the results of a case study analysing the potential impacts of a compound meteorological extreme event on the protective forest in the Val Mesolcina. These impacts were assessed in an experts survey. 29 Experts from practice, administration and science estimated the probabilities for a loss of the protective function due to a drought-related compound extreme event based on different hazard scenarios. The experts not only assessed these probabilities but also provided estimates about the reliability of the scenarios, other socio-economic consequences and options for adaptation.
This dataset contains the following information:
- Table with all (anonymised) answers from the survey
- Factsheets summarising the results and methods in German, French and Italian
- A detailed description of the study site and survey instructions
- Link to the project website wit illustrations for each individual question of the survey

bark-beetles

display_name: bark-beetles

compound-events

display_name: compound-events

drought

display_name: drought

extreme-events

display_name: extreme-events

forest-fire

display_name: forest-fire

natural-hazards

display_name: natural-hazards

protection-forest

display_name: protection-forest

protective-effect

display_name: protective-effect

en: Experts survey protective forest and combined extremes in Val Mesolcina


maintainer: Giulia Mazzotti

en: forest-structure forest-snow snow-distribution snow-modelling snow-energy-balance

en: Canopy data

en: Includes all canopy structure metrics computed at all surveyed locations

en: Coordinates data

en: Includes coordinate information of each surveyed point (7 x 276 = 1932 forest points, 2 open areas)

en: Snow depth data open sites

en: Contains all snow detph data accquired at open sites nearby the forest stands during the same period.

en: Grid point nomenclature

en: The grid structure of each forest site and the respective nomenclature applied to label individual points within each grid are outlined here.  Each point marks the location of snow depth measurements and co-located canopy structure parameters.

en: Snow depth data forest sites

en: Contains all snow depth data acquired at all forest sites during winters 2012/13, 2013714 and 2014/15.

en: Meteo data to drive FSM2 model

en: Includes meteorological driving data used to run the forest snow model FSM2, processed and parsed in text files that match the format required by FSM2. Separate files are available for each field area (Laret, Drusatscha and Ischlag) and season (2012/13, 2013/14, 2014/15). Each file includes data for the period from October 1st to May 31st at hourly resolution.

en:
This dataset contains all snow, canopy and meteorological data presented and used in the publication: Mazzotti, G., Essery, R., Moeser, D. & Jonas T. (2020) 'Resolving spatial variability of forest snow using an energy-balance model with a 1-layer canopy'. Water Resources Research, https://doi.org/10.1029/2019WR026129.
This publication must be cited when using this dataset.

forest-snow

display_name: forest-snow

forest-structure

display_name: forest-structure

snow-distribution

display_name: snow-distribution

snow-energy-balance

display_name: snow-energy-balance

snow-modelling

display_name: snow-modelling

en: Snow depth, canopy structure and meterorological datasets from the Davos area, Switzerland, Winters 2012/13-2014/15, used for high-resolution forest snow modelling


phenological-observations-lwf

title_for_slug: phenological-observations-lwf

en: long-term-forest-ecosystem-research swiss-forest-lab icp-forests tree-phenology precipitation

en: Data Request

en:
Phenological observations are recorded every 14 days on LWF plots where throughfall and bulk precipitation are sampled. The percentage of foliage in reference to its maximum potential development in summer, the percentage of foliage with autumnal discoloration and the percentage of fallen leaves (broadleaved stands) are estimated at the plot level. At two LWF plots (Othmarsingen, Vordemwald), phenological stages are documented on individual trees

 Purpose:

To document the seasonal development of the canopy of trees and shrubs at the plot level

icp-forests

display_name: icp-forests

long-term-forest-ecosystem-research

display_name: long-term-forest-ecosystem-research

precipitation

display_name: precipitation

swiss-forest-lab

display_name: swiss-forest-lab

tree-phenology

display_name: tree-phenology

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Phenological observations LWF


maintainer: Leo Gallus Bont

en: digital-elevation-model digital-planning cable-yarding swiss-geodata open-source qgis-plugin swiss-geo-downloader geoinformation-system seilaplan

en: Herunterladen des DHM mit SwissGeoDownloader

en: View video on youtube!

en:
In order to use the QGIS plugin ‘Seilaplan’ for digital cable line planning, a digital terrain model (DTM) is required. The plugin ‘Swiss Geo Downloader’, which is available for the open source geoinformation software QGIS, allows freely available Swiss geodata to be downloaded and displayed directly within QGIS. It was developed in 2021 by Patricia Moll in collaboration with the Swiss Federal Institute for Forest, Snow and Landscape Research WSL. In this tutorial we describe how to download the high accuracy elevation model ‘swissALTI3D’ with the help of the ‘Swiss Geo Downloader’ and how to use it for digital planning of a cable line with the plugin ‘Seilaplan’. Please note that the tutorial language is German!

Link to the Swiss Geo Downloader: https://pimoll.github.io/swissgeodownloader

Link to Seilaplan website: https://seilaplan.wsl.ch

*********************

Für die Verwendung des QGIS Plugins Seilaplan zur digitalen Seillinienplanung ist ein digitales Höhenmodell (DHM) nötig. Das Plugin Swiss Geo Downloader, welches für das Open Source Geoinformationssystem QGIS zur Verfügung steht, ermöglicht frei verfügbare Schweizer Geodaten direkt innerhalb von QGIS herunterzuladen und anzuzeigen. Es wurde 2021 von Patricia Moll in Zusammenarbeit mit der eidgenössischen Forschungsanstalt Wald, Schnee und Landschaft WSL entwickelt. In diesem Tutorial beschreiben wir, wie man mit Hilfe des Swiss Geo Downloaders das hochgenaue Höhenmodell swissALTI3D herunterladen und für die Seillinienplanung mit dem Plugin Seilaplan verwenden kann.

Link zum Swiss Geo Downloader: https://pimoll.github.io/swissgeodownloader

Link zur Seilaplan-Webseite: https://seilaplan.wsl.ch

cable-yarding

display_name: cable-yarding

digital-elevation-model

display_name: digital-elevation-model

digital-planning

display_name: digital-planning

geoinformation-system

display_name: geoinformation-system

open-source

display_name: open-source

qgis-plugin

display_name: qgis-plugin

seilaplan

display_name: seilaplan

swiss-geo-downloader

display_name: swiss-geo-downloader

swiss-geodata

display_name: swiss-geodata

en: Seilaplan Tutorial: DTM download with SwissGeoDownloader


en: damaging-agents damage-causes forest-condition long-term-forest-ecosystem-research forest-vitality icp-forests swiss-forest-lab crown-condition

en:
Annual Crown Condition Assessment including mortality and removal and Damage Causse Assessment on the Sanasilva-Sites and LWF plots.

 Purpose:

To assess tree and forest health and its changes and to assess occurence and extent of diseases

 Manual Citation:

 * Matthias Dobbertin, Christian Hug, Andreas Schwyzer, Serge Borer, Hanna Schmalz, 2016: Aufnahmeanleitung Kronenansprachen auf den Sanasilva- und den LWF-Flächen (Version 10). Sanasilva Inventur und Langfristige Waldökosystem-Forschung, Birmensdorf, 86 S. [>>>](https://www.wsl.ch/fileadmin/user_upload/WSL/Wald/Waldentwicklung_Monitoring/LWF/Sanasilva/ssi_anleitung_v10_extern.pdf)

 * Eichhorn J, Roskams P, Potocic N, Timmermann V, Ferretti M, Mues V, Szepesi A, Durrant D, Seletkovic  I,  Schröck  H-W,  Nevalainen  S,  Bussotti  F,  Garcia  P,  Wulff  S,  2016:  Part  IV:  Visual  Assessment of Crown Condition and Damaging Agents. In: UNECE ICP Forests Programme Co-ordinating Centre (ed.): Manual on methods and criteria for harmonized sampling, assessment, monitoring and analysis of the effects of air pollution on forests. Thünen Institute of Forest Ecosystems, Eberswalde, Germany, 49 p. + Annex [>>>](https://www.icp-forests.org/pdf/manual/2016/ICP_Manual_2017_02_part04.pdf )

 Paper Citation:

 * BAFU (2017) Jahrbuch Wald und Holz 2017. Umwelt-Zustand, Bundesamt für Umwelt, Bern, Vol. 1718: 110 p. [>>>](http://www.bafu.admin.ch/uz-1718-d)

 * Michel A, Seidling W, Prescher A K (2018) Forest Condition in Europe. 2018 Technical Report of ICP Forests. Report under the UNECE Convention on Long-Range Transboundary Air Pollution (CLRTAP). BFW-Dokumentation 25/2018, BFW Austrian Research Centre for Forests, Vienna, 92 p. [Technical Reports](http://icp-forests.net/page/icp-forests-technical-report)

 * Brang P., 1998: Sanasilva-Bericht 1997. Zustand und Gefährdung des Schweizer Waldes – eine Zwischenbilanz nach 15 Jahren Waldschadenforschung. Berichte der Eidg. Forschungsanstalt für Wald, Schnee und Landschaft, Vol. 345. Eidg. Forschungsanstalt WSL, Birmensdorf, 102 S. [>>>](https://www.dora.lib4ri.ch/wsl/islandora/object/wsl:14555)

crown-condition

display_name: crown-condition

damage-causes

display_name: damage-causes

damaging-agents

display_name: damaging-agents

forest-condition

display_name: forest-condition

forest-vitality

display_name: forest-vitality

en: Crown Condition Assessment and Damage Cause Assessment Sanasilva


en: governance spatial-development spatial-planning urban-regions strategic-spatial-planning land-use

en: This dataset is composed of an interview guide used to conduct 43 in-depth, qualitative, and in-person interviews with planning experts, academics and practitioners, in 14 European urban regions and the corresponding interview transcripts. These interviews were conducted in the selected urban regions between March and September 2016. They were first digitally recorded and later fully transcribed (verbatim).

en: Guiding document for the interview transcripts (Metadata of the written transcripts)

en: This is a guiding document supporting the dataset Interview guide and transcripts (CONCUR Aim 2 on Governance).

en: This dataset is composed of an interview guide used to conduct 43 in-depth, qualitative, and in-person interviews with planning experts, academics and practitioners, in 14 European urban regions and the corresponding interview transcripts (verbatim). These interviews were conducted in the selected urban regions between March and September 2016. They were first digitally recorded and later thoroughly transcribed.

governance

display_name: governance

land-use

display_name: land-use

spatial-development

display_name: spatial-development

spatial-planning

display_name: spatial-planning

strategic-spatial-planning

display_name: strategic-spatial-planning

urban-regions

display_name: urban-regions


en: forest ecology biodiversity radiation-transfer climate-change microclimate statistical-interpolation

en: Predicted microclimate topsoil temperatures at 5 cm below ground. 10 m spatial resolution raster files are provided for mean daily minimum (tmin), mean (tmean) and maximum (tmax) temperatures during each month from April (04) to October (10) over the period between 2012 to 2021.

en: Predicted microclimate air temperatures at 100 cm above ground. 10 m spatial resolution raster files are provided for mean daily minimum (tmin), mean (tmean) and maximum (tmax) temperatures during each month from April (04) to October (10) over the period between 2012 to 2021.

en: Predicted microclimate air temperatures at 5 cm above ground. 10 m spatial resolution raster files are provided for mean daily minimum (tmin), mean (tmean) and maximum (tmax) temperatures during each month from April (04) to October (10) over the period between 2012 to 2021.

en: Climate data matching the scales at which organisms experience climatic conditions are often missing. Yet, such data on microclimatic conditions are required to better understand climate-change impacts on biodiversity and ecosystem functioning. Here we combine a national network of microclimate temperature measurements with a novel radiative transfer model to map monthly minimum, mean and maximum temperatures during the vegetation period at a 10 meter spatial resolution across Switzerland. The temperature measurements took place in 107 sampling plots distributed across different habitat types, with 62 plots in forests, 22 below trees outside forests, and 23 in open grasslands. In each plot we measured temperature in the topsoil (-5cm), as well as in the air at 5cm and 100cm height above ground. Spatial interpolation was achieved by using a hybrid approach based on linear mixed effects models with input from detailed radiation estimates that account for topographic and vegetation shading, as well as other predictor variables related to the macroclimate, topography and vegetation height. Our data reveals strong horizontal and vertical variability in microclimate temperature, particularly for maximum temperatures at 5 cm above the ground and within the topsoil. Compared to macroclimate conditions as measured by weather stations outside forests, diurnal air and topsoil temperature ranges inside forests were reduced by up to 3.0 and 7.8 °C, respectively, while below trees outside forests, e.g. in hedges and below solitary trees, this buffering effect was 1.8 and 7.2 °C. We also found that in open grasslands, maximum temperatures at 5 cm above ground are on average 3.4 °C warmer than that of macroclimate, suggesting that in such habitats heat exposure close to the ground is often underestimated when using macroclimatic data. After accounting for macroclimate effects, microclimate patterns were primarily driven by radiation, with particularly strong effects on maximum temperatures. Results from spatial block cross-validation revealed predictive accuracies as measured by RSME’s ranging from 1.18 to 3.43 °C, with minimum temperatures generally being predicted more accurately than maximum temperatures. The microclimate maps presented here enable a more biologically relevant perspective when analysing climate-species interactions, which is expected to lead to a better understanding of biotic and ecosystem responses to climate and land use change.

biodiversity

display_name: biodiversity

climate-change

display_name: climate-change

ecology

display_name: ecology

forest

display_name: forest

microclimate

display_name: microclimate

radiation-transfer

display_name: radiation-transfer

statistical-interpolation

display_name: statistical-interpolation

educ

en: Education, culture and sport

en: Monthly topsoil and near surface microclimate temperature data for Switzerland


increment

title_for_slug: increment

en:
Increase in the volume of stemwood with bark of the trees and shrubs starting at 12 cm dbh that have survived between two inventories and of the losses (modelled for the half period), plus the volume of the gains. The correction for bias with the sample Tarif trees may be so drastic that it results in negative values with small numbers of trees.

Citation:
 > _Abegg, M.; Brändli, U.-B.; Cioldi, F.; Fischer, C.; Herold-Bonardi, A.; Huber M.; Keller, M.; Meile, R.; Rösler, E.; Speich, S.; Traub, B.; Vidondo, B. (2014). Fourth national forest inventory - result tables and maps on the Internet for the NFI 2009-2013 (NFI4b). [Published online 06.11.2014] Available from World Wide Web http://www.lfi.ch/resultate/ Birmensdorf, Swiss Federal Research Institute WSL. [doi:10.21258/1057112](https://doi.org/10.21258/1057112)_

altitudinal-vegetation-zone

display_name: altitudinal-vegetation-zone

avalanches-silvaprotect

display_name: avalanches-silvaprotect

biogeographical-region

display_name: biogeographical-region

conifers-broadleaves

display_name: conifers-broadleaves

economic-region

display_name: economic-region

increment

display_name: increment

landslide-mudflow-silvaprotect

display_name: landslide-mudflow-silvaprotect

lower-higher-altitudinal-zones

display_name: lower-higher-altitudinal-zones

main-tree-species

display_name: main-tree-species

ownership

display_name: ownership

potential-cost-for-timber-harvesting

display_name: potential-cost-for-timber-harvesting

processes-in-channels-silvaprotect

display_name: processes-in-channels-silvaprotect

production-region

display_name: production-region

protection-forest-region

display_name: protection-forest-region

rockfall-silvaprotect

display_name: rockfall-silvaprotect

site-quality

display_name: site-quality

stage-of-stand-development

display_name: stage-of-stand-development

tree-species-woody-species

display_name: tree-species-woody-species

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Increment


en: planning-efficacy governance strategic-planning analytical-hierarchy-process land-use-planning

en: The present content is part of the published paper Palka, G., Oliveira, E., Pagliarin, S., & Hersperger, A. M. (2021). Strategic spatial planning and efficacy: an analytic hierarchy process (AHP) approach in Lyon and Copenhagen. European planning studies, 29(6), 1174-1192. It contains the jupyter notebook and sample data to compute Analytical Hierarchy Process, and a report on its use.

analytical-hierarchy-process

display_name: analytical-hierarchy-process

governance

display_name: governance

land-use-planning

display_name: land-use-planning

planning-efficacy

display_name: planning-efficacy

strategic-planning

display_name: strategic-planning

en: Planning efficacy computation based on AHP


lwf-alptal-long-term-research-site

title_for_slug: lwf-alptal-long-term-research-site

en: forest lwf meteorological-data plot swiss-forest-lab infrastructure meteorological-measurements

en: LWF plot Alptal

en: Photo: Flurin Sutter, 2013

en: Alpthal Meteorological Data LWF

en: LWF plot Alptal Photo: P.Waldner

en:
![alt text](https://www.envidat.ch/dataset/49729a45-f5bf-4bc0-afdd-77123894d3bb/resource/aa505753-198c-49dc-a33e-c4c8e4fcb611/download/lwf_alptal.jpg "LWF Alptal")

LWF plot Alptal

- Community: Alpthal / canton SZ
- Date of installation: 31 May 1995
- Size of the plot: 0.6 ha
- Altitude: 1149-1170 m
- Mean slope: 23%
- Geology (in German): Nordpenninikum; obere Kreide-unteres Eozän, Wägitaler Flysch
- Soil types (WSL) : Mollic Gleysols, Gleyic Cambisols
- Woodland association after EK72: 49: Equiseto-Abietetum
- Main tree species: Picea abies
- Management system: high forest
- Silvicultural system: selection
- Top-height diameter (quadratic average diameter of the 100 thickest trees per ha): 39.3 cm
- Number of trees BHD >= 12 cm (2011): 321
- Maximum tree age: Picea abies 180-230 yr

More Information: https://www.wsl.ch/en/forest/forest-development-and-monitoring/long-term-forest-ecosystem-research-lwf/sites/alptal.html

forest

display_name: forest

infrastructure

display_name: infrastructure

lwf

display_name: lwf

meteorological-data

display_name: meteorological-data

meteorological-measurements

display_name: meteorological-measurements

plot

display_name: plot

swiss-forest-lab

display_name: swiss-forest-lab

en: LWF Alptal long-term research site


en: southern-switzerland drought-stress spei dendroecology grapevine-yellows

en: Dataset 1

en: Sample identification, symptomatology (symptomatic vs. asymptomatic), coordinates (CH1903), phloem disarrangement class, drought-sensitivity, slope sector.

en: Dataset 2. Ring width.

en:
Ring width measured with cellSens from slides.
Measures expressed as [μm] and arranged per ID (see dataset 1) and year.

en:
Dataset collected from dendroecological study on trunks of grapevines ('Chardonnay' cv.) infected by the "Flavescence dorée" phytoplasma (FDp) in Origlio (southern Switzerland) in 2019-2020. Ring widths were measured with cellSens (Olympus Corporation). Calculations and analysis were conducted within R.
The Flavescence dorée phytoplasma (FDp) causes a severe grapevine (Vitis vinifera) disease. Anatomical modification due to FDp infections are known to occur but research so far focused on stems and leaf tissues and, in particular, on their phloem structure. In this paper, we applied dendrochronological techniques on wood rings and analysed the anatomical structures of the trunk of the susceptible grapevine cultivar ‘Chardonnay’ in order to verify their response to FDp infections.
In this study, we tested the impact of FDp and drought stress on xylem ring width and also described phloem anomalies inside the trunk of grapevines. We concluded that drought and FDp infection both have a significant effect on ring width reductions and that FDp supersedes the effect of drought conditions (calculated after the SPEI index) in infected specimens.

dendroecology

display_name: dendroecology

drought-stress

display_name: drought-stress

grapevine-yellows

display_name: grapevine-yellows

southern-switzerland

display_name: southern-switzerland

spei

display_name: spei

en: Impact of the “Flavescence dorée” phytoplasma on xylem growth and phloem anomalies in trunks of ‘Chardonnay’ grapevines (Vitis vinifera)


en: eddy-covariance-measurements turbulence micro-rain-radar meteorological-data blowing-snow antarctica drifting-snow mass-flux large-eddy-simulations

en: Measurement data from snow particle counter at MRR site

en: Near-surface observations of drifting snow from a Snow Particle Counter (SPC) installed at the location of the Micro Rain Radar.

en: Readme

en: Meta data

en: Source code of the large-eddy simulations coupled with a Lagrangian stochastic model (LES-LSM), available on GitLab.

en: Measurement data from Micro Rain Radar (MRR)

en: Remote sensing data of blowing snow from a Micro Rain Radar (MRR).

en: Simulation data for a situation with negligible snow transport

en: Results from two LES-LSM simulations called NoDrift_1 and NoDrift_2, which reproduce the conditions observed at the S17 site on 12th January 2019, 05:40 to 05:50 UTC.

en: Measurement data from micro-meteorological station

en: Automatic in-situ measurements of micro-meteorology and snow transport

en: Simulation data for a situation with significant snow transport

en: Data from two LES-LSM simulations called Drift_1 and Drift_2, which reproduce the conditions observed at the S17 site on 11th January 2019, 00:40 to 00:50 UTC.

en:
This dataset contains measurement and simulation data. The measurements characterize the standard meteorology, turbulence, and snow transport at the S17 site near Syowa Station in East Antarctica during an expedition in austral summer 2018/2019. Large-eddy simulations with sublimating particles provide additional insight into the latent and sensible heat exchange between snow and air in two example situations observed at the S17 site.

A part of the measurement data was recorded by an automatic measurement station from 10th January 2019 to 26th January 2019. This measurement station was equipped with standard meteorological sensors, a three-dimensional ultrasonic anemometer, an open-path infrared gas analyzer, a snow particle counter, an infrared radiometer for measurements of the surface temperature, and a sonic ranging sensor measuring changes in snow surface elevation.

At a horizontal distance of approximately 500 m, a Micro Rain Radar (MRR) was installed in a tilted configuration with an elevation angle of 7° for remote sensing of blowing snow between 25th December 2018 and 24th January 2019. In addition, near-surface in-situ measurements of snow transport were performed at the location of the MRR by deploying a snow particle counter from 27th December 2018 to 24th January 2019.

The simulations cover a 18 x 18 x 6 m³ domain and reproduce the steady-state conditions during a 10-min interval with significant snow transport and another 10-min interval with negligible snow transport. We provide the model source code and the post-processed simulation data, i.e., horizontally averaged quantities as a function of height and time.

antarctica

display_name: antarctica

blowing-snow

display_name: blowing-snow

drifting-snow

display_name: drifting-snow

eddy-covariance-measurements

display_name: eddy-covariance-measurements

large-eddy-simulations

display_name: large-eddy-simulations

mass-flux

display_name: mass-flux

micro-rain-radar

display_name: micro-rain-radar

turbulence

display_name: turbulence

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Meteorology and snow transport at S17 near Syowa, Antarctica, in austral summer 2018/2019


digitizing-historical-plague

maintainer: Christian Ginzler

title_for_slug: digitizing-historical-plague

en: historical-plague yersinia-pestis palaeo-epidemiology plague-inventory black-death bubonic-plague plague-mapping plague-outbreaks

en: We present newly digitized data on 6,929 plague outbreaks that occurred between 1347 and 1900 AD across Europe. The data base on an inventory initially published 1976. For georeferencing the information of Tele Atlas 2009 was used. The coordinates are in the reference systems ETRS89 and WGS84.

black-death

display_name: black-death

bubonic-plague

display_name: bubonic-plague

historical-plague

display_name: historical-plague

palaeo-epidemiology

display_name: palaeo-epidemiology

plague-inventory

display_name: plague-inventory

plague-mapping

display_name: plague-mapping

plague-outbreaks

display_name: plague-outbreaks

yersinia-pestis

display_name: yersinia-pestis

en: Digitizing historical plague


permanent-vegetation-quadrats-lwf

title_for_slug: permanent-vegetation-quadrats-lwf

en: ground-vegetation species-composition swiss-forest-lab long-term-forest-ecosystem-research icp-forests

en: Data Request

en:
Ground vegetation is an important compartment of the ecosystem in terms of biodiversity and it takes an active part in the general functioning of the ecosystem. It is also a useful bio-indicator of the site conditions and its monitoring may enable the detection of environmental changes. Ground vegetation relevés were carried out repeatedly at 17 LWF plots during in the the period between 1994 and 2011. In 2013, ground vegetation was surveyed at an additional LWF plot (Laegeren). The cover of all plant species occurring in 16 1-m2 quadrats, distributed over the 43 x 43 m intensive monitoring subplot was visually assessed. Seedlings and saplings were also counted and their position within the quadrat was noted in order to assess tree regeneration.

 Purpose:

To assess the species diversity of ground vegetation and detect possible environmental changes using its bio-indicator value.

 Manual Citation:

 * Kull, P., 1997. Kapitel D2. Vegetationsaufnahmen. In: Brang, P. (Ed.), Aufnahmeanleitungen aller Forschungsprojekte auf Flächen der Langfristigen Waldökosystem-Forschung (LWF). Eidg. Forschungsanstalt WSL, Birmensdorf, pp. 1-9.

 * Canullo R, Starlinger F, Granke O, Fischer R, Aamlid D, 2016: Part VI.1: Assessment of Ground Vegetation. In: UNECE ICP Forests Programme Co-ordinating Centre (ed.): Manual on methods and criteria for harmonized sampling, assessment, monitoring and analysis of the effects of air pollution on forests. Thünen Institute of Forest Ecosystems, Eberswalde, 12 p. + Annex [http://icp-forests.net/page/icp-forests-manual](http://icp-forests.net/page/icp-forests-manual)

 Paper Citation:

 * Thimonier A, Kull P, Keller W, Moser B, Wohlgemuth T (2011) Ground vegetation monitoring in Swiss forests: comparison of survey methods and implications for trend assessments. Environmental Monitoring and Assessment, 174: 47-63. [doi: 10.1007/s10661-010-1759-y](http://doi.org/10.1007/s10661-010-1759-y)

ground-vegetation

display_name: ground-vegetation

icp-forests

display_name: icp-forests

long-term-forest-ecosystem-research

display_name: long-term-forest-ecosystem-research

species-composition

display_name: species-composition

swiss-forest-lab

display_name: swiss-forest-lab

en: Permanent vegetation quadrats LWF


en: shortwave-radiation longwave-radiation davos weisfluhjoch radiation

en: Metadata

en: DATA ACCESS

en: ASRB radiation station at the Weissfluhjoch versuchsfeld.

en: Parameter file

en: Description of ASRB parameters.

mimetype: text/plain

en: Processing doc

en: Description of processing code that was ported to R by P. Frei (2016).

en:
Incoming and outgoing shortwave and longwave 2 min radiation measurements at the Weissfluhjoch research site, Davos, CH. The experimental site at the Weissfluhjoch (WFJ, 46.83 N, 9.81 E) is located at an altitude of 2540 m in the Swiss Alps near Davos. During the winter months, almost all precipitation falls as snow at this altitude. As a consequence, a continuous seasonal snow cover builds up every winter, with a maximum snow height ranging from 153–366 cm over the period 1934–2012. The measurement site is located in an almost flat part of a southeast oriented slope.

 References
1. Marty, C., Philipona, R., Frohlich, C., Ohmura, A.. Altitude dependence of surface radiation fluxes and cloud forcing in the alps: results from the alpine surface radiation budget network. 2002. Theoretical and Applied Climatology. Volume 72. Issue 3-4. 137-155. http://dx.doi.org/10.1007/s007040200019. 10.1007/s007040200019.
2. Christoph Marty. Surface Radiation, Cloud Forcing and Greenhouse Effect in the Alps. 2000. Institute fuer Klimaforschung ETH. Zuercher Klima-Schriften. Volume 79. http://e-collection.library.ethz.ch/eserv/eth:23491/eth-23491-01.pdf.

davos

display_name: davos

longwave-radiation

display_name: longwave-radiation

radiation

display_name: radiation

shortwave-radiation

display_name: shortwave-radiation

weisfluhjoch

display_name: weisfluhjoch

en: ASRB_WFJVF: Shortwave and longwave radiation measurements (2 min) at the Weissfluhjoch research site, Davos


napf-ert-monitoring-data

title_for_slug: napf-ert-monitoring-data

en: early-warning shallow-landslides monitoring ert soil-moisture

en: ERT filtered monitoring data

en: ERT filtered monitoring data in dat format

en: ERT raw monitoring data

en: ERT raw monitoring data in bin format

en:
The dataset contains the electrical resistivity tomography (ERT) monitoring data from the publication Wicki and Hauck (2022). It contains the unprocessed monitoring data and the filtered monitoring data prior to the inversion process.

The data is organized in two zip-files:

*  Napf_Raw_BIN.zip: Raw monitoring data in bin-format
*  Napf_Filtered_DAT.zip: Filtered monitoring data in dat-format including topography of the monitoring line

The zip files contain the apparent resistivity measurements (ohm m) of the individual measurements. The naming convention of the files is according to following convention: site_profile_configuration_date_time.format

The file names contain following abbreviations:

*  Site: Napf
*  Profile: Hor (horizontal profile), Ver (vertical profile)
*  Configuration: WS (Wenner-Schlumberger configuration)
*  Date: Format YYYY-MM-DD
*  Time: Format hhmm

early-warning

display_name: early-warning

ert

display_name: ert

monitoring

display_name: monitoring

shallow-landslides

display_name: shallow-landslides

soil-moisture

display_name: soil-moisture

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Napf ERT monitoring data


maintainer: Henning Löwe

en: fast-sintering discrete-element-modelling angle-of-repose granular-snow grain-shape

en: Angle of repose and 3D CT images

en:
5 Snow types were examined and glass beads as a cohesion-less reference, named as follows:

RG: rounded grains (sieved with 0.7 - 1.4 mm)

FC: faceted grains (1.4 - 2 mm)

FCS: small faceted grains (0.7 - 1.4 mm)

IB: ice beads (4 mm)

IBS: small ice beads (2 - 2.2 mm)

GB: glass beads(2 mm)

en:
Angle of repose experiments were performed with different snow types at temperatures between -2 and -40°C. They were used to examine granular snow dynamics on the grain-scale with focus on the role of grain shape and cohesion. The angle of repose was observed by sieving snow onto a round, freestanding base until a stationary heap was formed.

This dataset consists of 1) the images of the experimental heaps that were taken to determine the angle of repose, 2) one binary 3D micro computed tomography image of each snow type. The CT images were taken with the SLF micro-CT40 to characterize snow properties and grain shape.

The experiments with natural snow types (rounded and faceted grains) and spherical model snow allowed for an examination of the differences in granular properties between natural grain shapes and spherical particles in view of Discrete Element Modelling. With the chosen temperatures, the effect of sintering could be observed that increases the angle of repose with increasing temperature.

angle-of-repose

display_name: angle-of-repose

discrete-element-modelling

display_name: discrete-element-modelling

fast-sintering

display_name: fast-sintering

grain-shape

display_name: grain-shape

granular-snow

display_name: granular-snow

en: Angle of repose experiments with natural and spherical snow


en: meteorological-measurements meteorological-data lwf forest plot infrastructure swiss-forest-lab

en: Nationalpark Meteorological Data LWF

en: LWF plot Nationalpark. Photo: Oliver Schramm, 2011

en:
![alt text](https://www.envidat.ch/dataset/4a0ff376-83d2-4ae4-bf2e-c361eb050778/resource/51e98f2d-5524-4ea6-babb-9df0b9aba8f1/download/lwf_nationalpark.jpg "LWF Nationalpark")

LWF Plot Nationalpark

- Community: Zernez / canton GR
- Date of installation: 10 October 1995
- Size of the plot: 2 ha
- Altitude: 1890-1907 m
- Mean slope: 11%
- Geology (in German): Nacheiszeitlicher Schwemmfächer; kalkhaltige Moräne, Dolomite, Kalke, Tonschiefer, Rauhwacken
- Provisional soil types (WSL): Rendzic Leptosol
- Woodland association after EK72: 67: Erico-Pinetum montanae
- Main tree species: Pinus mugo
- Management system: high forest
- Silvicultural system: forest reserve
- Top-height diameter (quadratic average diameter of the 100 thickest trees per ha): 23.7 cm
- Number of trees BHD >= 12 cm (2011): 2450
- Maximum tree age: Pinus mugo 210 yr

More Information: https://www.wsl.ch/en/forest/forest-development-and-monitoring/long-term-forest-ecosystem-research-lwf/sites/nationalpark.html

forest

display_name: forest

infrastructure

display_name: infrastructure

lwf

display_name: lwf

meteorological-data

display_name: meteorological-data

meteorological-measurements

display_name: meteorological-measurements

plot

display_name: plot

en: LWF Nationalpark long-term research site


maintainer: Athanasios Nenes

en: hygroscopicity supersaturation sigma-w cloud-modeling raclets dmt-ccn-chamber cloud-droplets ccn weissfluhjoch

en: Predicted cloud droplet number concentrations Weissfluhjoch

en:
In-situ measurements of aerosol size distributions along with updraft velocities collected from a wind Doppler Lidar are coupled with a state-of-the art droplet activation parameterization (Morales and Nenes, 2014) to determine the cloud droplet number and maximum in-cloud supersaturation that can potentially form over the Weissfluhjoch station between February 24 and March 8 2019. For this, a hygroscopicity parameter of 0.25 is assumed, according to the CCN-derived values. The data file contains:

* Date and time (DD/MM/YYYY hh:mm:ss) in UTC
* The wind-lidar derived standard deviation of updraft velocities (sigma-w) in m/s, used to apply the parameterization employing a single characteristic velocity (Morales and Nenes, 2010)
* The maximum predicted cloud parcel supersaturation (Smax%)
* The total in-situ aerosol number concentration (Naer) in cmˉ³, measured by the SMPS
* The predicted cloud droplet numbers (Nd) in cmˉ³
* The activation fraction (%)

en: Hygroscopicity parameter Weissfluhjoch

en:
The aerosol hygroscopicity parameter is derived combining the CCN and SMPS size distribution data collected between February 24 and March 8 2019 at Weissfluhjoch. The data file contains:

* Date and time (DD/MM/YYYY hh:mm:ss) in UTC
* The instrument supersaturation (SS%)
* The calculated hygroscopicity parameter (kappa)
* The calculated critical dry diameter of the particles (Dcr) in nm.

Missing values are indicated by "-999".

en: CCN data Weissfluhjoch

en:
In-situ CCN measurements were conducted between February 24 and March 8 2019 at Weissfluhjoch. The data file contains:

* Date and time (DD/MM/YYYY hh:mm:ss) in UTC
* Filtered CCN number concentrations (in cmˉ³) measured at 6 discrete supersaturations (SS) ranging from 0.09% to 0.74%. The name of each CCN column is indicative of the SS developed within the instrument.
* Instrument characteristics such as sample temperature (in °C) and pressure (in mbar)
* A code that refers to the reason of filtering.

Missing or filtered CCN values are indicated by "-999", while a declaration of each "Error_code" can be found in the following list:

_Error_code_:

0000: Measurements without error

1000: Period of transient operation after a supersaturation change

2000: Sharp change (decrease) in the room temperature housing the instrument, which induces a reset in column temperature

3000: Irregular values in the room temperature housing the instrument

9999: Missing data

en:
Cloud Condensation Nuclei (CCN) data: A Droplet Measurement Technologies (DMT) single-column continuous-flow streamwise thermal gradient chamber (CFSTGC; Roberts and Nenes, 2005) was deployed at the measurement site Weissfluhjoch (2700 m a.s.l., LON: 9.806475, LAT: 46.832964) to record the in-situ CCN number concentrations between February 24 and March 8 2019 for different supersaturations (SS). To account for the difference between the ambient (~735 mbar) and the calibration pressure (~800 mbar), the SS reported by the instrument is adjusted by a factor of 0.92. The CFSTGC was cycled between 6 discrete SS values ranging from 0.09% to 0.74%, producing a full CCN spectrum every hour. The raw CCN measurements are filtered to discount periods of transient operation and whenever the room temperature housing the instrument changed sufficiently to induce a reset in column temperature. Additional information can be found in Section 2.1.2 [here](https://acp.copernicus.org/preprints/acp-2020-1036/).

Hygroscopicity data: The CCN number concentration measurements were directly related to the size distribution and total aerosol concentration data measured by the Scanning Mobility Particle Size Spectrometer (SMPS) instrument at the same station (https://www.envidat.ch/dataset/aerosol-data-weissfluhjoch) to infer the particles hygroscopicity parameter (kappa). For each SMPS scan, the particles critical dry diameter (Dcr) is estimated by integrating backward the SMPS size distribution, until the aerosol number matches the CCN concentration observed for the same time period as the SMPS scan. Assuming the particle chemical composition is internally mixed, the kappa is determined from Dcr and SS, applying Köhler theory. Additional information can be found in Section 2.2 [here](https://acp.copernicus.org/preprints/acp-2020-1036/).

Predicted cloud droplet numbers: Droplet calculations are carried out with the physically based aerosol activation parameterization of Morales and Nenes (2014), employing the “characteristic velocity” approach of Morales and Nenes (2010). Aerosol size distribution observations required to predict the cloud droplet numbers and maximum in-cloud supersaturation are obtained from the SMPS instrument deployed at Weissfluhjoch. The required vertical velocity measurements are derived from the wind Doppler Lidar (https://www.envidat.ch/dataset/lidar-wind-profiler-data) deployed at Davos Wolfgang and are extracted for the altitude of interest, being 1100 m above ground level for Weissfluhjoch. Additional information can be found in Section 2.3 [here](https://acp.copernicus.org/preprints/acp-2020-1036/).

ccn

display_name: ccn

cloud-droplets

display_name: cloud-droplets

cloud-modeling

display_name: cloud-modeling

dmt-ccn-chamber

display_name: dmt-ccn-chamber

hygroscopicity

display_name: hygroscopicity

raclets

display_name: raclets

sigma-w

display_name: sigma-w

supersaturation

display_name: supersaturation

weissfluhjoch

display_name: weissfluhjoch

en: CCN, hygroscopicity, predicted cloud droplet numbers Weissfluhjoch


en: pore-shape-factors local-hydraulic-resistance permeability laminar-flow heterogeneous-porous-media

en: results postprocessing

en: The results of the pore identification and integration. The results are stored as follows. Each individual iso-pressure patch (first two columns) has an identification number Np. There is more information stored than needed, such as which patches are neighbors, and what there positions are, however to assess the local hydraulic resistance you need the integrated pore identification number stored under 'tracks'. All patches belonging to the same pore have the same track number. We stored the local pressure value under 'p_i', integrated flux Q under 'Q_i', total surface area A under 'A_i' and distance dx under 'dx_int', circularity C under 'phi_i'. There are attributes stored with other identifiers such as _p and _l, they refer to the two closest neighboring patches at iso-pressure values p_i+dp and p_i-dp respectively. To obtain the exact results this data has to be preprocessed such as described in the supplementary materials of the paper.

en: Porous Media 1 2 and 3

en: Direct numerical simulations to obtain local pressure and velocity field.

en: Included are three direct numerical simulations results of Stokes flow in three heterogeneous porous media obtained with OpenFoam simulations. In addition we include three data files that contain point-based extracted pores based on the post-processing as reported in the submitted paper "Local hydraulic resistance in heterogeneous porous media" in GRL.

heterogeneous-porous-media

display_name: heterogeneous-porous-media

laminar-flow

display_name: laminar-flow

local-hydraulic-resistance

display_name: local-hydraulic-resistance

permeability

display_name: permeability

pore-shape-factors

display_name: pore-shape-factors

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Hydraulic resistance of pores in porous media using DNS of laminar flow