en: climate-change biodiversity climate-change-impact lichen-growth-form bryophyte-life-strategy liverwort disturbance endemic photobiont madeira-island functional-taxonomic-groups moss bryophyte elevational-gradient functional-taxonomic-group endemic-species lichen-growthform lichen

en: MadCrypto – Bryophyte and macrolichen diversity in laurel forests of Madeira

en:
This dataset includes species lists of bryophytes and macrolichens (presence/absence) sampled on the forest floor and on trees in disturbed and undisturbed plots along elevation gradients in the laurel forests of Madeira island. It also contains species specific information (bryophytes: red list status, endemic status, taxonomic group, life strategy; macrolichens: photobiont type, growth form) as well as plot information (Plot_ID, sampling date, coordinates, elevation a.s.l. (m), disturbance type, sampled host tree species).

The dataset was used for the paper
Boch S, Martins A, Ruas S, Fontinha S, Carvalho P, Reis F, Bergamini A, Sim-Sim M (2019) Bryophyte and macrolichen diversity show contrasting elevation relationships and are negatively affected by disturbances in laurel forests of Madeira island. Journal of Vegetation Science.

en:
This dataset includes species lists of bryophytes and macrolichens (presence/absence) sampled on the forest floor and on trees in disturbed and undisturbed plots along elevation gradients in the laurel forests of Madeira island. It also contains species specific information (bryophytes: red list status, endemic status, taxonomic group, life strategy; macrolichens: photobiont type, growth form) as well as plot information (Plot_ID, sampling date, coordinates, elevation a.s.l. (m), disturbance type, sampled host tree species).

The dataset was used for the paper
Boch S, Martins A, Ruas S, Fontinha S, Carvalho P, Reis F, Bergamini A, Sim-Sim M (2019) Bryophyte and macrolichen diversity show contrasting elevation relationships and are negatively affected by disturbances in laurel forests of Madeira island. Journal of Vegetation Science 30: 1122–1133.

The excel file contains 5 sheets:
1) Plot information
2) Bryophyte data with species specific information, separated per substrate
3) Macrolichen data with species specific information, separated per substrate
4) Bryophyte data with species specific information (plot level data). Species lists of the two substrates were merged; if one substrate in a plot hosted a species identified only to genus level (genus spec.) but the second investigated substrate hosted an identified species of the same genus, we removed the genus spec. entry in the particular plot. The species list of sheet 2 and 4 might therefore differ slightly.
5) Macrolichen data with species specific information (plot level data). Species lists of the two substrates were merged; if one substrate in a plot hosted a species identified only to genus level (genus spec.) but the second investigated substrate hosted an identified species of the same genus, we removed the genus spec. entry in the particular plot. The species list of sheet 3 and 5 might therefore differ slightly.

biodiversity

display_name: biodiversity

bryophyte

display_name: bryophyte

bryophyte-life-strategy

display_name: bryophyte-life-strategy

climate-change

display_name: climate-change

climate-change-impact

display_name: climate-change-impact

disturbance

display_name: disturbance

elevational-gradient

display_name: elevational-gradient

endemic

display_name: endemic

endemic-species

display_name: endemic-species

functional-taxonomic-group

display_name: functional-taxonomic-group

functional-taxonomic-groups

display_name: functional-taxonomic-groups

lichen

display_name: lichen

lichen-growth-form

display_name: lichen-growth-form

lichen-growthform

display_name: lichen-growthform

liverwort

display_name: liverwort

madeira-island

display_name: madeira-island

moss

display_name: moss

photobiont

display_name: photobiont

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


maintainer: Matthias Haeni

en: wind-speed relative-humidity temperature precipitation meteorology par swiss-forest-lab meteo climate-change long-term

state: active

type: dataset

en: Data plot of the field station (CIF)

media_type: text/csv

en: Data file.

format: CSV

mimetype: text/csv

en: Site photo of the field station (CIF)

en: Site photo of the field station from the side.

format: SERVICE

mimetype: image/jpeg

en: Forest station data (CIB)

en: Site photo of the forest station (CIB)

en: Site photo of the forest station from below (viewing upwards the slope).

en: Data plot of the forest station (CIB)

media_type: application/pdf

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

format: PDF

mimetype: application/pdf

en: Site aerial photo (Chironico)

en: Site aerial photo from both Chironico stations. Source: Google. 2016. Site aerial photo from both Chironico stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Chironico in Switzerland where one station is located within a natural coniferous forest stand (CIB) with Norway spruce (_Picea abies_; 160-180 yrs) and European silver fir (_Abies alba_; 140-160 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, CIF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Chironico is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Chironico, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 2000 onwards


maintainer: EnviDat Support

en: last-glacial-maximum air-temperature glaciers orography precipitation paleo-climate

en: Data Access

en:
High resolution, downscaled climate model data are used in a wide variety of applications in environmental sciences. Here we present the CHELSA-TraCE21k downscaling algorithm to create global monthly climatologies for temperature and precipitation at 30 arcsec spatial resolution in 100 year time steps for the last 21,000 years. Paleo orography at high spatial resolution and at each timestep is created by combining high resolution information on glacial cover from current and Last Glacial Maximum (LGM) glacier databases with the interpolation of a dynamic ice sheet model (ICE6G) and a coupling to mean annual temperatures from CCSM3-TraCE21k. Based on the reconstructed paleo orography, mean annual temperature and precipitation was downscaled using the CHELSA V1.2 algorithm.

The data is published under a Creative Commons Attribution 2.0 Generic (CC BY 2.0) license.

format: GeoTIFF

en: Technical documentation

en: Technical documentation containing file metadata and variable descriptions.

air-temperature

display_name: air-temperature

glaciers

display_name: glaciers

last-glacial-maximum

display_name: last-glacial-maximum

orography

display_name: orography

paleo-climate

display_name: paleo-climate

educ

en: Education, culture and sport

en: CHELSA-TraCE21k: Downscaled transient temperature and precipitation data since the last glacial maximum


maintainer: Virginie Marques

en: plankton fish marine dna-metabarcoding fjord biodiversity environmental-dna

en: Code, data and figures

media_type: application/zip

en: Here there are all the data and code to reproduce the figures and analysis presented in the paper, with a README.md file

format: ZIP

en: Metabarcoding data

en: Raw metabarcoding data for both primers (teleo and 18S) and corresponding file to perform the demultiplexing and primer trimming

en:
This dataset contains the raw environmental DNA data associated with the publication *Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord* in the journal Polar Biology (2023).

 Methods

**Sampling**
We sampled the Lilliehöök fjord on the west coast of Spitsbergen (Svalbard, Norway) over 3 days from 3 to 5 of August 2021. Samples were taken from the glacier front up to the fjord mouth of the Krossfjorden system, around 30 km long, after the Lilliehöök fjord merged with the mouth of Möller fjord. The fjord’s maximum depth has been recorded at 373 m (Svendsen et al. 2002) and has no sill at its entrance, thereby facilitating water exchange with the open ocean of the West Spitsbergen Current. We used a research vessel to sample 5 sites for a total of 15 samples, sampling 3 depths per site (3-m, chlorophyll a maximum and 85-m, unless sea floor was shallower). Shallow and intermediate samples between 3-m and 12-m represent ~35-L of water filtered in-situ using long tubing and a peristaltic pump, and all other deeper samples were taken from a total of 3 Niskin bottles (General Oceanics), representing 22-L of water sampled per sample. Water was filtered through a VigiDNA filtration capsule (SPYGEN) with a 0.20-µm pore size using an Athena peristaltic pump (Proactive Environmental Products, Bradenton, Florida) with a flow rate of ~1-L/min. Each sample was handled with single use tubing and gloves.

**Molecular**
To perform the amplification, we used two sets of primers: teleo (forward: ACACCGCCCGTCACTCT, reverse: CTTCCGGTACACTTACCATG; Valentini et al. 2016) and the universal eukaryotic 1389F/1510R primer pair, amplifying the V9-18S rDNA gene (Amaral-Zettler et al. 2009) (forward: TTGTACACACCGCCC, reverse: CCTTCYGCAGGTTCACCTAC).

 Data content:

+ Metabarcoding data: This zip file contains the 2 sequencing libraries filtered to only retain the samples used in the present study.
+ Code, data and figure: This zip file contains all data and code to reproduce the figures and the analysis in the study, with an associated README explaining the content of each folder.

 Additional informations
For more details, please see the Methods in the associated publication: DOI: 10.1007/s00300-023-03187-9.

biodiversity

display_name: biodiversity

dna-metabarcoding

display_name: dna-metabarcoding

environmental-dna

display_name: environmental-dna

fish

display_name: fish

fjord

display_name: fjord

marine

display_name: marine

plankton

display_name: plankton

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data: Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord


vegetation-height-model-nfi

maintainer: Christian Ginzler

title_for_slug: vegetation-height-model-nfi

en: 3d forest point-cloud vegetation-height-model photogrammety

en: Countrywide Stereo-Image Matching for Updating Digital Surface Models in the Framework of the Swiss National Forest Inventory

en: 2012 Vegetation Height Model NFI

en:
Data 'Vegetation Height Model NFI 2012' available on request (christian.ginzler@wsl.ch).

A national vegetation height model was calculated for Switzerland using digital aerial images. We used the stereo aerial images acquired by the Federal Office of Topography swisstopo using the ADS80 sensor to first calculate a digital surface model (DSM) with a very high spatial resolution (1 × 1 m). The DSM was then normalized to obtain the actual vegetation heights using the digital terrain model (DTM) SwissAlti3D based on airborne laser data. Buildings are masked out using the NDVI information of the aerial images to produce a vegetation height model, and to produce a vegetation height model (VHM). Such a model will be calculated in the framework of the Swiss National Forest Inventory (NFI) with consistent methods and a very high level of detail. For covering the whole of Switzerland, we used summer aerial images from 2007 to 2012.

en: 2015 Vegetation Height Model NFI

en:
Data 'Vegetation Height Model NFI 2015' available on request (christian.ginzler@wsl.ch).

A national vegetation height model was calculated for Switzerland using digital aerial images. We used the stereo aerial images acquired by the Federal Office of Topography swisstopo using the ADS80 sensor to first calculate a digital surface model (DSM) with a very high spatial resolution (1 × 1 m). The DSM was then normalized to obtain the actual vegetation heights using the digital terrain model (DTM) SwissAlti3D based on airborne laser data. Buildings are masked out using the NDVI information of the aerial images to produce a vegetation height model, and to produce a vegetation height model (VHM). Such a model will be calculated in the framework of the Swiss National Forest Inventory (NFI) with consistent methods and a very high level of detail. For covering the whole of Switzerland, we used summer aerial images from 2010 to 2015.

en: 2016 Vegetation Height Model NFI

en:
Data 'Vegetation Height Model NFI 2016' available on request (christian.ginzler@wsl.ch).

A national vegetation height model was calculated for Switzerland using digital aerial images. We used the stereo aerial images acquired by the Federal Office of Topography swisstopo using the ADS80 sensor to first calculate a digital surface model (DSM) with a very high spatial resolution (1 × 1 m). The DSM was then normalized to obtain the actual vegetation heights using the digital terrain model (DTM) SwissAlti3D based on airborne laser data. Buildings are masked out using the NDVI information of the aerial images to produce a vegetation height model, and to produce a vegetation height model (VHM). Such a model will be calculated in the framework of the Swiss National Forest Inventory (NFI) with consistent methods and a very high level of detail. For covering the whole of Switzerland, we used summer aerial images from 2011 to 2016.

en: 2019 Vegetation Height Model NFI (current)

en:
Data 'Vegetation Height Model NFI 2019' available on request (christian.ginzler@wsl.ch).

A national vegetation height model was calculated for Switzerland using digital aerial images. We used the stereo aerial images acquired by the Federal Office of Topography swisstopo using the ADS80 sensor to first calculate a digital surface model (DSM) with a very high spatial resolution (1 × 1 m). The DSM was then normalized to obtain the actual vegetation heights using the digital terrain model (DTM) SwissAlti3D based on airborne laser data. Buildings are masked out using the NDVI information of the aerial images to produce a vegetation height model, and to produce a vegetation height model (VHM). Such a model will be calculated in the framework of the Swiss National Forest Inventory (NFI) with consistent methods and a very high level of detail. For covering the whole of Switzerland, we used summer aerial images from 2013 to 2019.

en: Thumbnail

en:
A national vegetation height model was calculated for Switzerland using digital aerial images.
We used the stereo aerial images acquired by the Federal Office of Topography swisstopo using the ADS80 sensor to first calculate a digital surface model (DSM) with a very high spatial resolution
(1 × 1 m and 0.5 x 0.5 m). The DSM was then normalized to obtain the actual
vegetation heights using a digital terrain model (DTM)
based on laser data with the buildings masked out, and to
produce a vegetation height model (VHM). Such a model
will be calculated in the framework of the Swiss National Forest Inventory (NFI) with consistent methods and a very
high level of detail. For covering the whole of Switzerland,
we use summer aerial images from six years.

Latest version is from 2019.

forest

display_name: forest

photogrammety

display_name: photogrammety

point-cloud

display_name: point-cloud

vegetation-height-model

display_name: vegetation-height-model

en: Vegetation Height Model NFI


maintainer: Franziska Gerber

en: antarctica consistent aws cryowrf python

en: Scripts to preprocess (and download for some databases) atmospheric weather station data. Furthermore, a list of stations and a map can be created to have an overview.

en:
There are many sources providing atmospheric weather station data for the Antarctic continent. However, variable naming, timestamps and data types are highly variable between the different sources. The published python code intends to make processing of different AWS sources from Antarctica easier. For all datasets that are taken into account variables are renamed in a consistent way. Data from different sources can then be handled in one consistent python dictionary.

The following data sources are taken into account:

* AAD: Australian Antarctic Division (https://data.aad.gov.au/aws)
* ACECRC: Antarctic Climate and Ecosystems Cooperative Research Centre by the Australian Antarctic Division
* AMRC: Antarctic Meteorological Research Center (ftp://amrc.ssec.wisc.edu/pub/aws/q1h/)
* BAS: British Antarctic Survey (ftp://ftp.bas.ac.uk/src/ANTARCTIC_METEOROLOGICAL_DATA/AWS/; https://legacy.bas.ac.uk/met/READER/ANTARCTIC_METEOROLOGICAL_DATA/)
* CLIMANTARTIDE: Antarctic Meteo-Climatological Observatory by the italian National Programme of Antarctic Research (https://www.climantartide.it/dataaccess/index.php?lang=en)
* IMAU: Institute for Marine and Atmospheric research Utrecht (Lazzara et al., 2012), https://www.projects.science.uu.nl/iceclimate/aws/antarctica.ph
* JMA: Japan Meteorological Agency (https://www.data.jma.go.jp/antarctic/datareport/index-e.html)
* NOAA: National Oceanic and Atmospheric Administration (https://gml.noaa.gov/aftp/data/meteorology/in-situ/spo/)
* Other/AWS_PE: Princess Elisabeth (PE), KU Leuven, Prof. N. van Lipzig, personal communication
* Other/DDU_transect: Stations D-17 and D-47 (in transect between Dumont d’Urville and Dome C, Amory, 2020)
* PANGAEA: World Data Center (e.g. König-Langlo, 2012)

Important notes

* Information about data sources is available. Some downloading scripts are included in the provided code. However, users should make sure to comply with the data providers terms and conditions.
* Given changing download options of the differnent institutions the above links may not permanently work and data has to be retrieved by the user of this dataset.
* No quality control is applied in the provided preprocessing software - quality control is up to the user of the datasets. Some dataset are quality controlled by the owner.

Acknowledgements
--------------------------
We thank all the data providers for making the data publicly available or providing them upon request. Full acknowledgements can be found in Gerber et al., submitted.

References
---------------
Amory, C. (2020). “Drifting-snow statistics from multiple-year autonomous measurements in Adélie Land, East
Antarctica”. The Cryosphere, 1713–1725. doi: 10.5194/tc-14-1713-2020

Gerber, F., Sharma, V. and Lehning, M.: CRYOWRF - a validation and the effect of blowing snow on the Antarctic SMB, JGR - Atmospheres, submitted.

König-Langlo, G. (2012). “Continuous meteorological observations at Neumayer station (2011-01)”. Alfred Wegener
Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, doi: 10.1594/PANGAEA.
775173

antarctica

display_name: antarctica

aws

display_name: aws

consistent

display_name: consistent

cryowrf

display_name: cryowrf

python

display_name: python

educ

en: Education, culture and sport

en: Preprocessing Antarctic Weather Station (AWS) data in python


en: growing-degree-days precipitation growing-season-length temperature solar-radiation soil-water-balance relative-humidity

en: CHELSA-BIOCLIM+ Technical Documentation

en: Technical documentation document including the variable names, units, scaling, offset, and background.

en: CHELSA-BIOCLIM+

en: Global extented set of bioclimatic variables at different temporal (e.g. monthly, annual, long term normals) resolution in Geotiff format.

en: A multitude of physical and biological processes on which ecosystems and human societies depend are governed by climatic conditions. Understanding how these processes are altered by climate change is central to mitigation efforts. Based on mechanistically downscaled climate data, we developed a set of climate-related variables at yet unprecedented spatiotemporal detail as a basis for environmental and ecological analyses. We created gridded data for near-surface relative humidity (hurs), cloud area fraction (clt), near-surface wind speed (sfcWind), vapour pressure deficit (vpd), surface downwelling shortwave radiation (rsds), potential evapotranspiration (pet), climate moisture index (cmi), and site water balance (swb), at a monthly temporal and 30 arcsec spatial resolution globally starting 1980 until 2018. At the same spatial resolution, we further estimated climatological normals of frost change frequency (fcf), snow cover days (scd), potential net primary productivity (npp), growing degree days (gdd), and growing season characteristics for the periods 1981-2010, 2011-2040, 2041-2070, and 2071-2100, considering three shared socioeconomic pathways (SSP126, SSP370, SSP585) and five Earth system models. Time-series variables showed high accuracy when validated against observations from meteorological stations. Climatological normals were also highly correlated to observations although some variables showed notable biases, e.g., snow cover days (scd). Together, the data sets presented here allow improving our understanding of patterns and processes that are governed by climate, including the impact of recent and future climate changes on the world’s ecosystems and associated services to societies.

growing-degree-days

display_name: growing-degree-days

growing-season-length

display_name: growing-season-length

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

soil-water-balance

display_name: soil-water-balance

solar-radiation

display_name: solar-radiation

temperature

display_name: temperature

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: CHELSA-BIOCLIM+ A novel set of global climate-related predictors at kilometre-resolution


en: marxan photovoltaic landscape spatial-planning energy wind-power social-acceptance optimization ecosystem-services

en:
This is the compressed Shapefile (ESRI) from the MARXAN optimization with 2216 rows (objects) and 18 columns (variables) with sf (simple feature) and data frame classes.
Column description:
X01 = Planning_units (PUs)
X02 = incl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X03 = incl.OS. number of times pu was selected in MARXAN when optimized for social costs
X04 = incl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X05 = incl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X06 = incl.OS. total energy (MWh/a)
X07 = incl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X08 = incl.OS. energy from wind turbines (MWh/a)
X09 = incl.OS. energy from ground-mounted PV infrastructure (MWh/a)

X10 = excl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X11 = excl.OS. number of times pu was selected in MARXAN when optimized for social costs
X12 = excl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X13 = excl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X14 = excl.OS. total energy (MWh/a)
X15 = excl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X16 = excl.OS. energy from wind turbines (MWh/a)
X17 = excl.OS. energy from ground-mounted PV infrastructure (MWh/a)
geometry = Simple feature XY geometry (SFC_POINT) each representing the center of a 4x4km planning unit (PU) in EPSG 21781 (CRS CH1903 / LV03).

en:
This study examines the siting scenarios for renewable energy infrastructure (REI) in Switzerland, incorporating the external costs of ecosystem services and, innovatively, social preferences. This approach challenges the prevalent techno-economic siting paradigm, which often overlooks these externalities. To minimize the external costs of the scenarios while maximizing energy yield, Marxan, an optimization software, was employed.
MARXAN was run for 2 versions: a) without ground-mounted open space PV infrastructure (excl. OS) and b) with ground-mounted open space PV infrastructure (incl. OS). In each version optimization was done using ecological costs (ECUess) or social costs (ECUsoc) in a regular grid of 4x4km (planning unit).

File:
PU_data.shp: compressed Shapefile (ESRI) from the MARXAN optimization with 2216 rows (objects) and 18 columns (variables) with sf (simple feature) and data frame classes.

Headers are described below:
X01 = Planning_units (PUs)

X02 = incl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X03 = incl.OS. number of times pu was selected in MARXAN when optimized for social costs
X04 = incl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X05 = incl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X06 = incl.OS. total energy (MWh/a)
X07 = incl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X08 = incl.OS. energy from wind turbines (MWh/a)
X09 = incl.OS. energy from ground-mounted PV infrastructure (MWh/a)

X10 = excl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X11 = excl.OS. number of times pu was selected in MARXAN when optimized for social costs
X12 = excl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X13 = excl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X14 = excl.OS. total energy (MWh/a)
X15 = excl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X16 = excl.OS. energy from wind turbines (MWh/a)
X17 = excl.OS. energy from ground-mounted PV infrastructure (MWh/a)

geometry = Simple feature XY geometry (SFC_POINT) each representing the center of a 4x4km planning unit (PU) in EPSG 21781 (CRS CH1903 / LV03).

For MARXAN optimizations (for meaning of standard files in MARXAN see https://scholar.google.ch/scholar_url?url=https://courses.washington.edu/cfr590/software/Marxan1810/marxan_manual_1_8_2.pdf&hl=de&sa=X&ei=NAWHZI6JJ8PFmAGMo47oDQ&scisig=AGlGAw-DBrsV4kUzkR6GkN1jtG66&oi=scholarr), pu_data.shp was used to generate MARXAN files input.dat, pu.dat, puvfeat.dat, spec.dat.
Coordinate Reference System: CH1903 / LV03. EPSG: 21781.

ecosystem-services

display_name: ecosystem-services

energy

display_name: energy

landscape

display_name: landscape

marxan

display_name: marxan

optimization

display_name: optimization

photovoltaic

display_name: photovoltaic

social-acceptance

display_name: social-acceptance

spatial-planning

display_name: spatial-planning

wind-power

display_name: wind-power

en: Optimizing renewable energy siting in the Swiss landscape


maintainer: Christian Rixen

en: stillberg fertilization tree-rings dwarf-shrubs nitrogen-isotope treeline

en: Metadata Nutrient Addition Stillberg Experimental Design

media_type: image/png

en: Nutrient addition map of the study area with the investigated plots. Each circle (study block) contains one control plot and two plots that received NPK fertilizer corresponding to 15 (NPK15) or 30 (NPK30) kg N ha-1 a-1. Contour lines specify the elevation (m a.s.l.) in steps of 10 m.

format: PNG

en: Data Nutrient Addition Stillberg

en: This link leads to the figshare repository, which contains all nutrient addition data.

en: Project Description Nutrient Addition Stillberg

media_type: text/html

en: Link to Nutrient Addition project description on the WSL website (in German).

format: HTML

en:
 Background information

The availability of nitrogen (N) and phosphorus (P) is considered to be a major factor limiting growth and productivity in terrestrial ecosystems globally. This project aimed to determine whether the growth stimulation documented in previous short‐term fertilisation trials persisted in a longer‐term study (12 years) in the treeline ecotone, and whether possible negative effects of nutrient addition offset the benefits of any growth stimulation.
Over the course of the 12 study years, NPK fertiliser corresponding to 15 or 30 kg N ha−1 a−1 was added annually to plots containing 30‐year‐old *Larix decidua* or 32‐year-old *Pinus uncinata* individuals with an understorey of mainly ericaceous dwarf shrubs. To quantify growth, annual shoot increments of trees and dwarf shrubs as well as radial growth increments of trees were measured. Nutrient concentrations in the soil were also measured and the foliar nutritional status of trees and dwarf shrubs was assessed.

 Experimental design

Over an elevation gradient of 140 m across the treeline afforestation site Stillberg, 22 locations were chosen that covered the whole range of microenvironmental conditions (*see* Nutrient addition experimental design.png). Half of the blocks included European larch (*L. decidua*) and the other half included mountain pine (*P. uncinata*). Within each block, three plantation quadrats were randomly selected as experimental plots and each plot was assigned to a control (no fertilisation) or to one of two fertiliser dose treatments (15 kg and 30 kg N ha−1 a−1). Treatments were assigned randomly but confined so that the location of fertilised plots within a block was not directly above control plots to avoid nutrient input from drainage. For details about the experiment, *see* Möhl et al (2019).

 Data description

The available datasets contain climate variables (2004-2016), nutrient isotope measurements (2010 & 2016), shrub growth measurements (2004-2016), soil parameter measurements and annual ring and shoot measurements (2004-2016). All data can be found here:
<https://figshare.com/articles/dataset/Twelve_years_of_low_nutrient_input_stimulates_growth_of_trees_and_dwarf_shrubs_in_the_treeline_ecotone/7025858>

dwarf-shrubs

display_name: dwarf-shrubs

fertilization

display_name: fertilization

nitrogen-isotope

display_name: nitrogen-isotope

stillberg

display_name: stillberg

tree-rings

display_name: tree-rings

treeline

display_name: treeline

en: Nutrient addition experiment at the Alpine treeline site Stillberg, Switzerland


maintainer: Leo Gallus Bont

en: seilaplan accessible-forest forest openstreetmap geoprocessing qgis

en: Power lines vector data (close to the area of the sample forest range)

mimetype: application/zip

en: Digitised sample perimeter

en: Juypter Notebook for Data Preparation

en: Juypter Notebook for Data Preparation (online)

en: Railways vector data (close to the sample forest range)

en: Preview

mimetype: image/png

en: Forest vector data (for sample forest range)

en: DEM (for the area of the sample forest range)

media_type: image/tiff

format: TIFF

mimetype: image/tiff

en:
This dataset contains open vector data for railways, forests and power lines, as well an open digital elevation model (DEM) for a small area around a sample forest range in Europe (Germany, Upper Bavaria, Kochel Forest Range, some 70 km south of München, at the edge of Bavarian Alps).
The purpose of this dataset is to provide a documented sample dataset in order to demonstrate geospatial preprocessing at FOSS4G2019 based on open data and software. This sample has been produced based on several existing open data sources (detailed below), therefore documenting the sources for obtaining some data needed for computations related to forest accessibility and wood harvesting. For example, they can be used with the open methodology and QGIS plugin [Seilaplan]( https://doi.org/10.16904/envidat.software.1) for optimising the geometric layout cable roads or with additional open software for computing the forest accessibility for wood harvesting.
The vector data (railways, forests and power lines) was extracted from OpenStreetMap (data copyrighted OpenStreetMap contributors and available from https://www.openstreetmap.org). The railways and forests were downloaded and extracted on 18.05.2019 using the open sources QGIS (https://www.qgis.org) with the QuickOSM plugin, while the power lines were downloaded a couple of days later on 23.05.2019.

Additional notes for vector data:
Please note that OpenStreeMap data extracts such as forests, roads and railways (except power lines) can also be downloaded in a GIS friendly format (Shapefile) from http://download.geofabrik.de/ or using the QGIS built-in download function for OpenStreetMap data. The most efficient way to retrieve specific OSM tags (such as power=line) is to use the QuickOSM plugin for QGIS (using the Overpass API - https://wiki.openstreetmap.org/wiki/Overpass_API) or directly using overpass turbo (https://overpass-turbo.eu/). Finally, the digitised perimeter of the sample forest range is also made available for reproducibility purposes, although any perimeter or area can be digitised freely using the QGIS editing toolbar.

The DEM was originally adapted and modified also with QGIS (https://www.qgis.org) based on the elevation data available from two different sources, by reprojecting and downsampling datasets to 25m then selecting, for each individual raster cell, the elevation value that was closer to the average. These two different elevation sources are:

- Copernicus Land Monitoring Service - EU-DEM v.1.1 (TILE ID E40N20, downloaded from https://land.copernicus.eu/imagery-in-situ/eu-dem/eu-dem-v1.1; this original DEM was produced by the Copernicus Land Monitoring Service “with funding by the European Union” based on SRTM and ASTER GDEM)
- Digitales Geländemodell 50 m Gitterweite (https://opendata.bayern.de/detailansicht/datensatz/digitales-gelaendemodell-50-m-gitterweite/), produced by the Bayerische Vermessungsverwaltung – www.geodaten.bayern.de –and downloaded from http://www.geodaten.bayern.de/opendata/DGM50/dgm50_epsg4258.tif

This methodology was chosen as a way of performing a basic quality check, by comparing the EU-DEM v.1.1 derived from globally available DEM data (such as SRTM) with more authoritative data for the randomly selected region, since using authoritative data is preferred (if open and available). For other sample regions, where authoritative open data is not available, such comparisons cannot longer be performed.

Additional notes DEM: a very good DEM open data source for Germany is the open data set collected and resampled by Sonny (sonnyy7@gmail.com) and made available on the Austrian Open Data Portal http://data.opendataportal.at/dataset/dtm-germany. In order to simplify end-to-end reproducibility of the paper planned for FOSS4G2019, we use and distribute an adapted (reprojected and resampled to 25 meters) sample of the above mentioned dataset for the selected forest range.

This sample dataset is accompanied by software in Python, as a Jupiter Notebook that generates harmonized output rasters with the same extent from the input data. The extent is given by the polygon vector dataset (Perimeter). These output rasters, such as obstacles, aspect, slope, forest cover, can serve as input data for later computations related to forest accessibility and wood harvesting questions. The obstacles output is obtained by transforming line vector datasets (railway lines, high voltage power lines) to raster. Aspect and slope are both derived from the sample digital elevation model.

accessible-forest

display_name: accessible-forest

forest

display_name: forest

geoprocessing

display_name: geoprocessing

openstreetmap

display_name: openstreetmap

qgis

display_name: qgis

seilaplan

display_name: seilaplan

educ

en: Education, culture and sport

en: Sample Geodata and Software for Demonstrating Geospatial Preprocessing for Forest Accessibility and Wood Harvesting at FOSS4G2019


maintainer: Mountain Hydrology and Mass Movements

en: flood-fatalities debris-flow-fatalities rockfall-fatalities earthquake-fatalities ice-avalanche-fatalities windstorm-fatalities lightning-fatalities landslide-fatalities natural-hazard-fatalities

en: Natural hazard fatalities per year in Swizterland since 1946.

en:
This dataset contains the number of fatalities due to flood, debris flow, landslide, rockfall, windstorm, lightning, ice avalanche, earthquake and other processes like roof avalanche or lacustrine tsunami for each year since 1946.
The following information is contained (by column and column title):

* year
* total number of hazard fatalities
* number of fatalities by flood (German: Hochwasser, Überschwemmung). Flood includes people drowned in flooded or inundated areas or carried away in streams under high-water conditions.
* number of fatalities by debris flow (German: Murgang).
* number of fatalities by landslide (German: Erdrutsch). Landslide includes people killed by landslides and hillslope debris flows (German: Hangmure).
* number of fatalities by rockfall (German: Steinschlag, Fels- und Bergsturz).
* number of fatalities by windstorm (German: Sturm). Windstorm includes people killed by falling objects or trees during very strong wind conditions and people who drowned in lakes because their boat capsized during such conditions.
* number of fatalities by lightning (German: Blitz).
* number of fatalities by ice avalanche (German: Eislawine).
* number of fatalities by earthquake (German: Erdbeben).
* number of fatalities by other processes like roof avalanche, lacustrine tsunami (German: andere Prozesse wie Dachlawine, Tsunami im See).

The data was collected based on newspaper research. For more information please refer to

_Badoux, A., Andres, N., Techel, F., and Hegg, C.: Natural hazard fatalities in Switzerland from 1946 to 2015, Nat. Hazards Earth Syst. Sci., 16, 2747-2768, https://doi.org/10.5194/nhess-16-2747-2016, 2016._

The data collection is financed by the FOEN (with exception of the collection of the avalanche fatalities). The data contains the official statistics of the FOEN on fatalities due to flood, debris flow, landslide, rock fall and avalanche.

Restrictions: The data set is not complete. Only fatalities in or around settlements and on open transportation routes are included. More precisely, fatalities were not collected, when persons exposed themselves to a great danger on purpose. Or fatalities during leisure activities which are connected to a higher risk were not included (this includes e.g. canoeing or river surfing during flood, canyoning, mountaineering, climbing, walking or driving on a closed road).

Fatalities by avalanches are collected at the WSL Institute for Snow and Avalanche Research SLF. You can download the avalanche fatalities per hydrological year [here](https://www.envidat.ch/dataset/avalanche-fatalities-switzerland-1936) and per calendar year [here](https://www.envidat.ch/dataset/avalanche-fatalities-per-calendar-year-since-1936). For a direct comparison with the fatalities presented here, please download the data set with the calendar years and do not consider fatalities in the backcountry (tour) or in terrain close to ski areas (offpiste).

debris-flow-fatalities

display_name: debris-flow-fatalities

earthquake-fatalities

display_name: earthquake-fatalities

flood-fatalities

display_name: flood-fatalities

ice-avalanche-fatalities

display_name: ice-avalanche-fatalities

landslide-fatalities

display_name: landslide-fatalities

lightning-fatalities

display_name: lightning-fatalities

natural-hazard-fatalities

display_name: natural-hazard-fatalities

rockfall-fatalities

display_name: rockfall-fatalities

windstorm-fatalities

display_name: windstorm-fatalities

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Number of natural hazard fatalities per year in Switzerland since 1946


maintainer: Axel Volkwein

en: field-test mass-movements field-data experiment rockfall experiments trajectory natural-hazards field-tests

en: Jumps and impacts

en: This table contains data of more than 2200 of each jumps and impacts of the test blocks on a grassy slope. It gives there durations in combination with acting accerlartions and the rotational speed of the blocks. The data were retrieved using the block internal accelerometer and rotation sensors. The combination of these data with the measurement from the local positioning system allows the deduction of jump lengths, slope gradient etc.

en: These data contain the point clouds obtained from laser scanning the test slope and the six test blocks used for the experiments. The coordinates of the slope are given in CH-1903 format. The coordinates of the block point clouds are kept in a lokal x/y/z coordinate system.

en: Block trajectories recorded from local positioning system

en: This file contains more than 80 rockfall trajectories projected onto the terrain, i.e. the positions of the single blocks over time during the single tests that were recorded by the local positioning system with about 10Hz. It contains the detected positions as well as a smoothened path (see Volkwein et al., Geosciences, 2018). The table also contains the derived velocities and accelerations along the slope (attention: these accelerations are the once that occur during an impact).

en: Overview of all tests

en:
This table gives an overview on all tests performed including
- block used
- start & end position
- number of jumps
- etc.
-

en:
In summer 2014, 6 rock blocks between 20 and 80kg have been thrown in total 111 times down a slope at the Swiss Oberalppass close to the village Tschamut. The slope was mainly covered by grass and its lower part was flat and large enough to provide natural runouts of the single trajectories.

An extensive measurement program has been set up to measure the block trajectories: With surveyor's instruments the slope and the six used rock blocks were scanned and the start and end positions of each test were recorded. During the single events two cameras filmed the trajectories. A special sensor device located within the blocks recorded the acting accelerations and rotational speeds over time. Further, the device emitted a Wifi signal that got detected from eight receivers around the slope. Based on this signal the block position has been recorded over time.

The dataset contains all data that were gathered through above field campaign.

experiment

display_name: experiment

experiments

display_name: experiments

field-data

display_name: field-data

field-test

display_name: field-test

field-tests

display_name: field-tests

mass-movements

display_name: mass-movements

natural-hazards

display_name: natural-hazards

rockfall

display_name: rockfall

trajectory

display_name: trajectory

en: Repetitive trajectory testing in Tschamut 2014


en: forest microbial-biomass plfa drought c13-labeling biogeochemical-cycling

en: Gao_Frank_C13 pulse labeling.xlsx

en:
Data of manuscript by Gao t al. : Drought resistance and resilience of rhizosphere communities in forest soils from the cellular to ecosystem scale – insights from 13C pulse labeling
Inludes data on 13C pulse-labeling experiment in young beech model ecosystems and a mature pine forest. Data of soil climate, total PLFA, 13C label strength in PLFA of pulse-labeling carried out under drought and after rewetting

format: XLS

en: Data of 13C-pulselabeling experiments in a young beech model ecosystem and a mature pine forest exposed to drought and rewetting. Data include microclimate during the experiment, total PLFA contents, d13C signatures in PLFA , microbial biomass, soil-respired CO2 measure during 30 days following 3-4 hour long pulse labeling with highly 13C-enriched CO2.

biogeochemical-cycling

display_name: biogeochemical-cycling

drought

display_name: drought

forest

display_name: forest

microbial-biomass

display_name: microbial-biomass

plfa

display_name: plfa

educ

en: Education, culture and sport

en: Gao_Drought resistance and resilience of rhizosphere communities_13C-PLFA


en: soil-quality fungi conservation soil-organisms database soil-dependency fauna soil-biodiversity eco-fauna ecosystem-protection red-list lichens info-fauna

en: Overview over the soil dependency and endangerment status of different groups of organisms.

en: Raw dataset of species and their soil dependency as well as endangerment status.

en: Proportion of endangered species grouped by the four soil dependency classes.

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:
Frey B., Maurer C., Schneider K. (2023) Informationen zum Boden anhand der Gebundenheit der Rote-Liste Arten BAFU. Bundesamt für Umwelt BAFU. 26 p.

Please cite this paper together with the citation for the datafile.

Soil is the habitat and basis of life for countless creatures. The great importance of soil organisms for the fertility of our soils is widely recognized, but information is sparse on their distribution and possible endangerment in Switzerland. In the present project, target species, i.e. species that are closely linked to the soil, were identified, and for the the first time, information was gathered on the degree of endangerment of the soil ecosystem in Switzerland on the basis of Red List species. For eleven Red List groups, the species' soil dependency was determined, i.e. whether their life cycle includes stages in or on the soil. The assessment of soil dependency was made using four classes, which enabled the classification not only of insects but also of vertebrates, land snails, lichens and fungi.

conservation

display_name: conservation

database

display_name: database

eco-fauna

display_name: eco-fauna

ecosystem-protection

display_name: ecosystem-protection

fauna

display_name: fauna

fungi

display_name: fungi

info-fauna

display_name: info-fauna

lichens

display_name: lichens

red-list

display_name: red-list

soil-biodiversity

display_name: soil-biodiversity

soil-dependency

display_name: soil-dependency

soil-organisms

display_name: soil-organisms

soil-quality

display_name: soil-quality

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Information on soil based on the soil dependency of the FOEN red list species


restoring-grassland-multifunctionality

title_for_slug: restoring-grassland-multifunctionality

en: restoration plants grassland mineralization soil-biodiversity biodiversity nematodes ecosystem-multifunctionality fungi bacteria

en: Functional diversity above_belowground fauna

en: Please note that EMF, MF.below, MF.abio and Soil.hetero have been corrected.

en: Please note that C.sto and Corg have been corrected.

en:
Please cite this paper together with the citation for the datafile.

Resch, M. C., Schütz, M., Buchmann, N., Frey, B., Graf, U., van der Putten, W. H., Zimmermann, S., Risch, A. C. 2021. Evaluating long-term success in grassland restoration – an ecosystem multifunctionality approach. Ecological Applications 31, e02271.

 Study area

The study was conducted in the Canton of Zurich, Switzerland, in and around two nature reserves Eigental and Altläufe der Glatt (47°27’ to 47°29’ N, 8°37’ to 8°32’ E, 417 to 572 m a.s.l.). All studied grasslands were located with a radius of approximately 4 km. Average monthly temperatures range from 0.7 ± 2.0 °C (January) to 19.0 ± 1.5 °C (July), and monthly precipitation range from 60 ± 42 mm (January) to 118 ± 46 mm (July [maxima]; 1989-2017; MeteoSchweiz 2018). In our study, we focused on semi-dry and semi-wet oligo- to mesotrophic grasslands characterized by high plant species richness and groundwater fluctuations throughout the year (Delarze et al. 2015, see also Resch et al. 2019).

 Experimental design and sampling

A large-scale restoration experiment to expand and reconnect isolated remnants of species-rich grasslands was initiated in the nature reserve Eigental in 1990. Twenty hectares of adjacent intensive grasslands were chosen for restoration. In 1995, three restoration methods of increasing intervention intensities were implemented. The goal of all three methods was to lower the availability of soil nutrients and hence, facilitate ecosystem development towards the targeted nutrient-poor grasslands. These methods were: Harvest only (hay harvest twice a year), Topsoil (removal of the nutrient-rich topsoil), and Topsoil+Propagules (topsoil removal combined with the application of hay from target vegetation). Plant biomass harvest (once a year in late summer/early autumn) commenced in Topsoil and Topsoil+Propagules five years after the soils were removed and is still ongoing today. We measured restoration success by comparing the three restoration methods with intensively managed (Initial) and semi-natural grasslands (Target) 22 years after restoration. Initial grassland sites share the same agricultural history as the restored sites: mowing and subsequent fertilizing (manure) up to five times a year, as well as different tillage regimes (Resch et al. 2019). Target sites were the sites from which hay for seeding the Topsoil+Propagules sites was collected. Soil conditions (i.e., soil types, soil texture) were comparable to those found in the restored grasslands (Resch et al. 2019). Additionally, Target sites were selected to represent a variety of semi-natural grasslands, including semi-dry to semi-wet conditions. In Target grasslands, biomass is harvested once a year in late summer or early autumn. Eleven 5 m x 5 m (25 m2) plots were randomly established in each of the five treatments (in total 55 plots; for a detailed map see Neff et al. 2020). An additional 2 m x 2 m (4 m2) subplot was randomly established at least 2 m away from each 25 m2 plot for destructive sampling. Data sampling took place between June and September 2017.

Vegetation properties

All plant species were identified within the 25 m2 plots (nomenclature: Lauber and Wagner 1996) in mid-June 2017 (in total 250 species). Vegetation structure and plant biomass were assessed diagonally on a transect of 2 m x 10 cm within the 25 m2 plot in early July 2017. We measured the maximum and mean height of the vegetation at the start, middle and end of the transect and calculated the standard deviation of these measures to describe vegetation structural heterogeneity (Schuldt et al. 2019). Thereafter, biomass was clipped on the entire transect to 1 cm height, sorted into five functional groups (graminoids, forbs, legumes, litter, and woody species), dried at 60 °C for 48 h, and weighed (Meyer et al. 2015).

 Aboveground arthropods

Aboveground arthropods were sampled at two locations in each 25 m2 plot in early July 2017 (see also Neff et al. 2020). Briefly, two cylindrical baskets (50 cm diameter, 67 cm height; woven fabric) were thrown simultaneously from outside the plot into two opposite corners. A closable mosquito mesh sleeve was mounted to the top of the baskets and an integrated metal ring at the bottom was fixed to the ground with metal stakes to assure that insects could not escape. A suction sampler (Vortis, Burkhard Manufacturing Co. Ltd., Hertfordshire, England) was then inserted into one of the baskets through the opening of the sleeve and the plot was “vacuumed" twice for 105 seconds with a 30 seconds break. The collected animals were immediately transferred into 70% ethanol. Arthropods were sorted and assigned to 23 taxonomic groups. Holometabolic larvae were lumped into one category while hemimetabolic larvae were grouped separately from adults in the respective taxonomic rank. We used mean values of individuals per plot for total abundance. Aboveground arthropod richness was defined by the number of different taxa to lowest taxonomic level (in total 23 taxa). All taxa were assigned to one of five trophic levels: 1) primary producers, 2) primary consumers, 3) secondary consumers, 4) tertiary consumers, and 5) quaternary consumers.

 Belowground fauna

Sampling of all belowground fauna took place in mid-July 2017. Earthworms were sampled in two 30 cm x 30 cm x 20 cm soil monoliths at two opposite corners of the 25 m2 plot (opposite to aboveground arthropod sampling). The excavated soil monolith was broken by hand, all earthworms collected and immediately transferred in a 4% formaldehyde solution. Thereafter, earthworm individuals were identified to species level (in total 10 taxa; Christian and Zicsi 1999) and species assigned to three functional groups (Bouché 1977).
To assess soil arthropod communities, we randomly collected one undisturbed soil core (5 cm diameter, 12 cm depth) in each 4 m2 subplot with a slide hammer corer lined with a plastic sleeve (AMS Samplers, American Falls, Idaho, USA). Soil arthropods were extracted using Berlese-Tullgren funnels (3 mm mesh), starting the day of sampling and lasting 14 days. Individuals were stored in 70% ethanol. Soil arthropods were assigned to 41 taxonomic groups and 4 feeding types. Holometabolic and hemimetabolic larvae were treated as previously described for aboveground arthropods. Belowground arthropod richness refers to the 41 taxonomic groups.

For soil nematode sampling, we randomly collected eight soil cores of 2.2 cm diameter (Giddings Machine Company, Windsor, CO, USA) within each 4 m2 subplot to a depth of 12 cm. The eight cores were combined, gently homogenized, placed in coolers, kept at 4 °C and transported to the laboratory at NIOO in Wageningen (NL) within one week after collection. Free-living nematodes were extracted from 200 g of fresh soil using Oostenbrink elutriator (Oostenbrink 1960) and prepared for morphological identification and quantification as described by Resch et al. (2019). Nematodes were identified to family level (39 taxa) according to Bongers (1988), assigned to 17 functional groups, 5 feeding types and 5 colonizer-persister (C-P) classes (Yeates et al. 1993, Bongers 1990, Resch et al. 2019).

We randomly collected two more soil cores (2.2 cm diameter x 12 cm depth) within each 4 m2 subplot to determine soil microbial communities. Again, the soil cores were combined, homogenized, placed in coolers and transported to the laboratory at WSL in Birmensdorf (Switzerland) where the metagenomic DNA was extracted from 8 g sieved soil (2 mm) using the DNeasy PowerMax Soil Kit (Quiagen, Hilden, NRW, GER) according to the manufacturer`s instructions. PCR amplification of the V3-V4 region of the prokaryotic small-subunit (16S) and the ribosomal internal transcribed spacer region (ITS2) of eukaryotes was performed with 1 ng of template DNA utilizing PCR primers and conditions as previously described (Frey et al., 2016). PCRs were run in triplicates and pooled. The pooled amplicons were sent to the Genome Quebec Innovation Centre (Montreal, QC, Canada) for barcoding using the Fluidigm Access Array technology (Fluidigm) and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, CA, USA). Quality filtering, clustering into operational taxonomic units (OTUs) and taxonomic assignment were performed as described by Frey et al. (2016) and Adamczyk et al. (2019). We used a customised pipeline largely based on UPARSE (Edgar 2013) implemented in USEARCH v. 9.2 (Edgar 2010). After discarding singletons of dereplicated sequences, clustering into OTUs with 97% sequence similarity was performed (Edgar 2013). Quality-filtered reads were mapped on the filtered set of centroid sequences. Taxonomic classification of prokaryotic and fungal sequences was conducted querying against most recent versions of SILVA (v.132, Quast et al. 2013) and UNITE (v.8, Nilsson et al. 2018). Only taxonomic assignments with confidence rankings equal or higher than 0.8 were accepted (assignments below 0.8 set to unclassified). Prokaryotic OTUs assigned to mitochondria or chloroplasts as well as eukaryotic OTUs assigned other than fungi were removed prior to data analysis. In addition, prokaryotic and fungal datasets were filtered to discard singletons and doubletons. Thereafter, OTU abundance matrices were rarefied to the lowest number of sequences per community, to normalize the total number of reads and achieve parity between samples (Prokaryota: 29,843 reads; Fungi: 26,690 reads). Finally, prokaryotic and fungal observed richness (number of OTUs) were estimated (Prokaryota: 14,010 OTUs; Fungi: 5,813 OTUs). For prokaryotes, we distinguished five and for fungi six functional types based on lowest taxonomic resolution (Nguyen et al. 2016, Tedersoo et al. 2014). Belowground taxon richness was defined by the total number of earthworm, arthropod, nematode, fungi, and prokaryote taxa assigned to lowest taxonomic level. Finally, all belowground taxa were assigned to the same five trophic levels as the aboveground arthropods.

 Soil chemical and physical properties, soil nitrogen mineralization

We randomly collected three 5 cm diameter x 12 cm depth soil samples in each 4 m2 subplot with a slide hammer corer (AMS Samplers, American Falls, Idaho, USA), pooled them and then made two subsamples. One was field-fresh and stored at 3 °C until analysis, the other was dried for 48 h at 60 °C and passed through a 4 mm mesh. From the dried sample, we measured soil pH potentiometrically in 0.01 M CaCl2 (soil:solution ratio=1:2; 30 minutes equilibration time). Total and organic carbon content were measured on fine-ground samples (≤ 0.5 mm) by dry combustion using a CN analyzer NC 2500 (CE Instruments, Wigan, United Kingdom). Inorganic carbon of samples with a pH > 6.5 was removed with acid vapor prior to analysis of organic carbon (Walthert et al. 2010). We calculated total soil carbon (C) storage after correcting its content for soil depth, stone content and density of fine earth (see below). Exchangeable cations were determined on another 5 g dry soil sample with 50 mL unbuffered 1 M NH4Cl solution (soil:solution ratio=1:10, end-over-end shaker for 1.5 hours) and measured by an ICP-OES (Optima 7300 DV, Perkin-Elmer, Waltham, Massachusetts, USA). Thereafter, cation exchange capacity (CEC) was calculated as the sum of exchangeable cations and protons (and expressed as mmolc per 1 kg soil) and used to describe nutrient retention capacity in our plots. Concentrations of exchangeable protons were calculated as the difference between total and Al-induced exchangeable acidity as determined by the KCl-method (Thomas 1982).

Ammonium (NH4+) and nitrate (NO3−) were extracted from a 20 g fresh subsample with 80 mL 1M KCl for 1.5 hours on an end-over-end shaker and filtered through ashless folded filter paper (DF 5895 150, ALBET LabScience, Hahnemühle FineArt GmbH, Dassel, Germany). NH4+ concentrations were determined colorimetrically by automated flow injection analysis (FIAS 300, Perkin-Elmer, Waltham, Massachusetts, USA). NO3− concentrations were measured colorimetrically according to Norman and Stucki (1981). Potential soil net nitrogen (N) mineralization was assessed during an 8-week incubation period under controlled moisture (60% of field capacity), temperature (20 °C) and light conditions (dark) in the laboratory. We weighed duplicate samples of fresh soil equivalent to 8 g dry soil (24 h at 104 °C) into 50 mL Falcon tubes. Soil samples were extracted for NH4+ and NO3− at the beginning and after eight weeks as described above. Soil net N mineralization was calculated as the difference between the inorganic nitrogen (NH4+ and NO3−) before and after the incubation (Hart et al. 1994), corrected for the total incubation time and represented per day values expressed as mg N kg-1 soil d-1.

To assess soil physical properties, we randomly collected one undisturbed soil core per 4 m2 subplot (5 cm diameter, 12 cm depth) in a steel cylinder that fit into the slide hammer (AMS Samplers, American Falls, Idaho, USA). The cylinder was capped in the field to avoid disturbance. We then measured field capacity in the laboratory. For this purpose, the cylinder and soil therein were saturated in a water bath and drained on a sand/silt-bed with a suction corresponding to 60 cm hydrostatic head. The moist soil was dried at 105 °C to constant weight. Field capacity was calculated by dividing the mass of water by the total mass of wet soil contained at 60 cm hydrostatic head and used to describe water holding capacity. Thereafter, samples were passed through a 4 mm mesh. Fine-earth and skeleton fractions were weighed separately to assess bulk soil density (fine-earth plus skeleton), density of fine earth, and proportion of skeleton. Particle density was determined with the pycnometer method (Blake and Hartge 1986), and total porosity and proportion of fine pores were calculated (Danielson and Sutherland 1986). Clay, silt, and sand contents were quantified with the sediment method (Gee and Bauder 1986).

Surface and soil temperature (12 cm depth, water-resistant digital pocket thermometer; IP65, H-B Instrument, Trappe, Pennsylvania, USA) as well as volumetric soil moisture content (12 cm depth, time domain reflectometry; Field-Scout TDR 300, Spectrum Technologies, Aurora, Illinois, USA) were measured at five random locations within the 4 m2 subplots every month from June to September. We calculated the standard deviation of each temperature and moisture measure over four months to describe seasonal variations. Slope inclination was determined at plot-level via GPS measurements (GPS 1200, Leica Geosystem, Heerbrugg, Switzerland) and categorized into slope gradient classes according to FAO standards (1990). Thickness of the topsoil horizon (equivalent to Ah or Aa horizon) was determined at one soil monolith (30 x 30 x 30 cm3) per 4 m2 subplot in cm and rounded to next integer.

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bacteria

display_name: bacteria

biodiversity

display_name: biodiversity

ecosystem-multifunctionality

display_name: ecosystem-multifunctionality

grassland

display_name: grassland

mineralization

display_name: mineralization

nematodes

display_name: nematodes

plants

display_name: plants

restoration

display_name: restoration

en: Restoring grassland multifunctionality


en: fem crystallographic x-ray-tomography elasticity microstructure geometrical anisotropy

en:
The study aims to determine the effective elastic properties of snow, firn, and bubbly ice based on microstructural quantities. Anisotropy, one of these quantities (the other being ice volume fraction) in snow and ice, has two types: geometrical and crystallographic, resulting in snow's macroscopic anisotropic elastic behavior. The research focuses on the impact of geometrical anisotropy on potential ice volume fractions in snow and ice. 391 micro-CT images from various locations, including laboratories, the Alps, the Arctic, and Antarctica, were analyzed to achieve this.
 The analysis involved microstructure-based finite element simulations, which inherently consider microstructure and calculate the elasticity tensor. Hashin-Shtrikman bounds were utilized to predict the elastic properties of the microstructure samples. These bounds effectively captured the nonlinear interplay between geometrical anisotropy, captured by the Eshelby tensor and density. HS bounds have the advantage of the correct limiting behavior for low to high-ice volume fractions.
 We derived parameterization for five transversely isotropic elasticity tensor components, requiring only two free parameters. This parameterization was valid for ice volume fractions ranging from 0.06 to 0.93. The analysis employing the Thomsen parameter highlighted the dominance of geometrical anisotropy until an ice volume fraction of 0.7. However, to fully comprehend the elasticity of bubbly ice, a comprehensive approach is necessary to integrate coupled elastic theories that account for both geometrical and crystallographic anisotropy.
This dataset includes a Jupyter notebook with all the necessary functions required to predict the elasticity tensor of snow for the given ice volume fraction and anisotropy. Also, the code contains the least squares optimization function to compute the elasticity tensor for the six components of stress and strain. For example, we consider our dataset to calculate the samples' elasticity tensor and reproduce Fig. 7 from the paper. We take the stress and strain values obtained from load states as input for this example.
Also, a .csv file contains all the microstructural information: ice volume fraction, anisotropy, correlation functions, voxels size, and no. of voxels of the samples and the elasticity tensor obtained from finite element simulations and from present work parameterization.

anisotropy

display_name: anisotropy

crystallographic

display_name: crystallographic

elasticity

display_name: elasticity

fem

display_name: fem

geometrical

display_name: geometrical

microstructure

display_name: microstructure

x-ray-tomography

display_name: x-ray-tomography

en: Effective, anisotropic elasticity tensor of snow, firn, and bubbly ice