en: conservation-genetics melanargia-galathea genetic-diversity genetic-structure monitoring

en:
Individual genotypes assessed at six nuclear microsatellite loci (two alleles per locus) for individuals of the butterfly Melanargia galathea (Marbled white) that were collected throughout Switzerland, along the regular grid of the Biodiversity Monitoring (BDM) of Switzerland. For each individual, the sampling site (number) and the genotype are given. Note that due to privacy restrictions, the original geographic coordinates remain disclosed. For original coordinates, data holders should be contacted (Swiss Federal Office for the Environment; Biodiversity Monitoring Switzerland).
The data refer to the following publication: Terzer et al., Distinct spatial patterns of genetic structure and diversity in the butterfly Marbled White (Melanargia galathea) inhabiting fragmented grasslands. Conservation Genetics, https://doi.org/0.1007/s10592-023-01593-4.

conservation-genetics

display_name: conservation-genetics

genetic-diversity

display_name: genetic-diversity

genetic-structure

display_name: genetic-structure

melanargia-galathea

display_name: melanargia-galathea

monitoring

display_name: monitoring

educ

en: Education, culture and sport

en: EnviDat: the Environmental Data Portal

en: Nuclear microsatellite genotypes of the butterfly Melanargia galathea


maintainer: Virginie Marques

en: plankton marine biodiversity environmental-dna fjord dna-metabarcoding fish

state: active

type: dataset

en: Code, data and figures

media_type: application/zip

en: Here there are all the data and code to reproduce the figures and analysis presented in the paper, with a README.md file

format: ZIP

en: Metabarcoding data

en: Raw metabarcoding data for both primers (teleo and 18S) and corresponding file to perform the demultiplexing and primer trimming

en:
This dataset contains the raw environmental DNA data associated with the publication *Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord* in the journal Polar Biology (2023).

 Methods

**Sampling**
We sampled the Lilliehöök fjord on the west coast of Spitsbergen (Svalbard, Norway) over 3 days from 3 to 5 of August 2021. Samples were taken from the glacier front up to the fjord mouth of the Krossfjorden system, around 30 km long, after the Lilliehöök fjord merged with the mouth of Möller fjord. The fjord’s maximum depth has been recorded at 373 m (Svendsen et al. 2002) and has no sill at its entrance, thereby facilitating water exchange with the open ocean of the West Spitsbergen Current. We used a research vessel to sample 5 sites for a total of 15 samples, sampling 3 depths per site (3-m, chlorophyll a maximum and 85-m, unless sea floor was shallower). Shallow and intermediate samples between 3-m and 12-m represent ~35-L of water filtered in-situ using long tubing and a peristaltic pump, and all other deeper samples were taken from a total of 3 Niskin bottles (General Oceanics), representing 22-L of water sampled per sample. Water was filtered through a VigiDNA filtration capsule (SPYGEN) with a 0.20-µm pore size using an Athena peristaltic pump (Proactive Environmental Products, Bradenton, Florida) with a flow rate of ~1-L/min. Each sample was handled with single use tubing and gloves.

**Molecular**
To perform the amplification, we used two sets of primers: teleo (forward: ACACCGCCCGTCACTCT, reverse: CTTCCGGTACACTTACCATG; Valentini et al. 2016) and the universal eukaryotic 1389F/1510R primer pair, amplifying the V9-18S rDNA gene (Amaral-Zettler et al. 2009) (forward: TTGTACACACCGCCC, reverse: CCTTCYGCAGGTTCACCTAC).

 Data content:

+ Metabarcoding data: This zip file contains the 2 sequencing libraries filtered to only retain the samples used in the present study.
+ Code, data and figure: This zip file contains all data and code to reproduce the figures and the analysis in the study, with an associated README explaining the content of each folder.

 Additional informations
For more details, please see the Methods in the associated publication: DOI: 10.1007/s00300-023-03187-9.

biodiversity

display_name: biodiversity

dna-metabarcoding

display_name: dna-metabarcoding

environmental-dna

display_name: environmental-dna

fish

display_name: fish

fjord

display_name: fjord

marine

display_name: marine

plankton

display_name: plankton

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Data: Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord


maintainer: EnviDat Support

en: 18o metamorphism stable-water-isotope advection snow

en: Read-me

media_type: text/plain

en: A short description of the data contained in the zipped-file. Recommended for reading before downloading the dataset.

format: TXT

mimetype: text/plain

en: Data files and read-me

en: raw data and micro-CT data available from contacts

mimetype: application/zip

en:
Stable water isotopes (δ18O) obtained from snow and ice samples of polar regions are used to reconstruct past climate variability, but heat and mass transport processes can affect the isotopic composition. Here we present an experimental study on the effect on the snow isotopic composition by airflow through a snow pack in controlled laboratory conditions. The influence of isothermal and controlled temperature gradient conditions on the δ18O content in the snow and interstitial water vapor is elucidated. The observed disequilibrium between snow and vapor isotopes led to exchange of isotopes between snow and vapor under non-equilibrium processes, significantly changing the δ18O content of the snow. The type of metamorphism of the snow had a significant influence on this process.
Ebner, P. P., Steen-Larsen, H. C., Stenni, B., Schneebeli, M., and Steinfeld, A.: Experimental observation of transient δ18O interaction between snow and advective airflow under various temperature gradient conditions, The Cryosphere Discuss., https://doi.org/10.5194/tc-2017-16, accepted, 2017.

advection

display_name: advection

metamorphism

display_name: metamorphism

snow

display_name: snow

stable-water-isotope

display_name: stable-water-isotope

en: Experiments on stable water isotopes,  snow metamorphism, and advection


en: landscape-change land-use machine-learning modelling landscape land-cover

en: Compressed (.zip) file containing six georeferenced raster files in the GeoTIFF format with embedded coordinate reference system, and a table (comma separated values, .csv) encoding a colour palette for plotting (HEX colour codes for each class). GeoTIFF file names include the time-step and the RCP (e.g. “LULC_2020_2049_RCP45.tiff”). Each raster file has 3484x2207 square pixels (i.e. 7.7 megapixels) and is projected in the Swiss coordinate system CH1903+/LV95 (EPSG:2056).

en:
Code used to produce the Land-use/land-cover forecasts for Switzerland across the 21st century at 100-m resolution.
The script is based on input data which are not included as they are not freely available, therefore it will not run as it is. These input data are described in the accompanying publication on Data Science access to them can be requested to their owners. Alternatively the code can be modified to run on other data.

en: We present forecasts of land-use/land-cover (LULC) change for Switzerland for three time-steps in the 21st century under the representative concentration pathways 4.5 and 8.5, and at 100-m spatial and 14-class thematic resolution. We modelled the spatial suitability for each LULC class with a neural network (NN) using >200 predictors and accounting for climate and policy changes. We used data augmentation to increase performance for underrepresented classes, resulting in an overall quantity disagreement of 0.053 and allocation disagreement of 0.15, which indicate good model performance. These class-specific spatial suitability maps outputted by the NN were then merged in a single LULC map per time-step using the CLUE-S algorithm, accounting for LULC demand for the future and a set of LULC transition rules. As the first LULC forecast for Switzerland at a thematic resolution comparable to available LULC maps for the past, this product lends itself to applications in land-use planning, resource management, ecological and hydraulic modelling, habitat restoration and conservation.

land-cover

display_name: land-cover

land-use

display_name: land-use

landscape

display_name: landscape

landscape-change

display_name: landscape-change

machine-learning

display_name: machine-learning

modelling

display_name: modelling

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: High resolution land use forecasts for Switzerland in the 21st century


swiss-fluxnet-site-davos

title_for_slug: swiss-fluxnet-site-davos

en: meteorological-measurements swiss-forest-lab swiss-fluxnet flux icos greenhouse-gas forest eddy-covariance

en: Site description

format: SERVICE

en: Fluxnet2015 dataset

en: Processed flux and meteo data are also part of the Fluxnet2015 dataset.

en: Processed data

en: Processed flux and meteo data are available from the European Fluxes Database Cluster.

en: Data access

en: The flux and meteo data of the Swiss FluxNet site Davos are openly available. Near real-time flux and meteo data are uploaded daily to the ICOS Carbon Portal.

en:
The Swiss FluxNet Site Davos is a managed subalpine evergreen forest, located on the Seehorn mountain near Davos in the Swiss Alps. The site is dominated by Norway spruce. The tower is owned by the Federal Office for the Environment (FOEN).
Ecosystem flux measurements of CO2, H2O (since 1997) as well as CH4 and N2O (since 2016) are performed with the eddy covariance method.
In addition to Swiss FluxNet, the site is part of the National Air Pollution Monitoring Network (NABEL), the Long term Forest Ecosystem Research (LWF), the biological drought and growth indicator network (TreeNet) and of ICOS Switzerland (Integrated Carbon Observation System). Since November 2019, the site is an ICOS Class 1 Ecosystem station.

Measurements

- Ecosystem flux measurements of CO2, H2O vapour (since 1997) as well a CH4 and N2O (since 2016) are performed with the eddy-covariance method. This method is based on measurements of trace gas mixing ratios, using infrared gas analyzers (for CO2, H2O vapor) and laser spectrometers (for CH4 and N2O), combined with wind speed and wind direction measurements, using 3D sonic anemometers. To resolve the short-term turbulent fluctuations in the atmosphere, very fast measurements are needed: we measure at 10-20 Hz, i.e., 10-20 times per second. To assess the energy budget of each ecosystem, also radiation sensors and soil climate profiles are installed at the site.
- Sub-canopy eddy fluxes (CO2, H2O, since 2023 also CH4).
- Continuous profile concentration and forest floor flux measurement of CO2, H2O, CH4, N2O.
- Auxiliary micrometeorology and soil climate measurements.

Data availability

Near real-time flux and meteo data uploaded daily to the ICOS Carbon Portal. Processed flux and meteo data are also available from the European Fluxes Database Cluster and part of Fluxnet2015 dataset.

Data policy

ICOS data license:
[https://www.icos-cp.eu/data-services/about-data-portal/data-license](https://www.icos-cp.eu/data-services/about-data-portal/data-license)

Detailed site info:
[https://www.swissfluxnet.ethz.ch/index.php/sites/ch-dav-davos/site-info-ch-dav/](https://www.swissfluxnet.ethz.ch/index.php/sites/ch-dav-davos/site-info-ch-dav/)

eddy-covariance

display_name: eddy-covariance

flux

display_name: flux

forest

display_name: forest

greenhouse-gas

display_name: greenhouse-gas

icos

display_name: icos

meteorological-measurements

display_name: meteorological-measurements

swiss-fluxnet

display_name: swiss-fluxnet

swiss-forest-lab

display_name: swiss-forest-lab

en: Swiss FluxNet Site Davos


en: built-up-classification topography urban-morphology urban-compactness planning-outcome urban-sprawl nature-conservation forest-persistence spatial-modelling land-use-and-cover-change forest-gain basic-services

en: Master plan Ubatuba (zones)

en: Mean income in Reais (R$) per census sector (change per year)

format: GeoTIFF

en: Ecological-Economic Zoning (EEZ)

format: SHP

en: Descricao dos dados em portiuguês

media_type: application/pdf

en: Portugues description

format: PDF

en: Native forest cover gains from 2005 to 2015

en: isolated

en: New built-up pixels classified as isolated

en: Urban persistence: Built-up 2005 = Built-up 2015

en: Axial

en: New built-up pixels classified as axial

en: Topographic Index Position (TPI)

en: Increase in sanitation service

en: Increase in waste collection service

en: infill

en: New built-up pixels classified as infill

en: Human Development Index (HDI) per municipality (change per year)

en: slope

en: Slope °

en: Increase in Normalized Difference Vegetation Index

en:
Basic education in % per census sector (change per
year)

en: Increase in clean water provision service

en: Population density per pixel (change per year)

en: Permanent housing density increase

en: Native forest cover persistence from 2005 to 2015

en: Master plan Ihabela (zones)

en: Variables description

en: Table of content. Variables description, source, and other important information

en:
The present dataset is part of the published scientific paper entitled “The role of spatial planning in land change: An assessment of urban planning and nature conservation efficiency at the southeastern coast of Brazil” (Pierri Daunt, Inostroza and Hersperger, 2021). In this work, we evaluated the conformance of stated spatial planning goals and the outcomes in terms of urban compactness, basic services and housing provision, and nature conservation for different land-use strategies. We evaluate the 2005 Ecological-Economic Zoning (EEZ) and two municipal master plans from 2006 in a coastal region in São Paulo State, Brazil. We used Partial Least Squares Path Modelling (PLS-PM) to explain the relationship between the plan strategies and land-use change ten years after implementation in terms of urban compactness, basic services and housing increase, and nature conservation.

We acquired the data for the explanatory variables from different sources listed on Table 1. Since the model is spatially explicit, all input data were transformed to a 30 m resolution raster. Regarding the evaluated spatial plans, we acquired the zones limits from the São Paulo State Environmental Planning Division (CPLA-SP), Ilhabela and Ubatuba municipality.

1)	Land use and cover data: Urban persistence, Urban axial, Urban infill, Urban Isolates, Forest cover persistence, Forest cover gain, NDVI increase

We acquired two Landsat Collection 1 Higher-Level Surface Reflectance images distributed by the U.S. Geological Survey (USGS), covering the entire study area (paths 76 and 77, row 220, WRS-2 reference system, https://earthexplorer.usgs.gov/). We classified one image acquired by the Landsat 5 Thematic Mapper (TM) sensor on 2005-05-150, and one image from the Landsat 8 Operational Land Imager (OLI) sensor from 2015-08-15. We collected 100 samples for forest cover, 100 samples for built-up cover and 100 samples for other classes. We then classified these three classes of land cover at each image date using the Support Vector Machine (SVM) supervised algorithm (Hsu et al., 2003), using ENVI 5.0 software.

Land-use and land-cover changes from 2005 to 2015 were quantified using map algebra, by mathematically adding them together in pairs (10*LULC2015 + LULC2005). We reclassified the LULC data into forest gain (conversion of any 2005 LULC to forest cover in 2015); forest persistence (2005 forested pixels that remained forested in 2015); new built-up area (conversion of any 2005 LULC to built-up in 2015); and urban maintenance (2005 built-up pixels that remained built-up in 2015).

To describe the spatial configuration of the urban expansion, we classified the new built-up areas into axial, infill and isolated, following Inostroza et al. (2013) (For details, please refer to Supplementary Material I at the original publication).

The NDVI was obtained from the same source used for the LULC data. With the Google Engine platform, we used an annual average for the best pixels (without clouds) for 2005 and 2015, and we calculated the changes between dates. We used increases of > 0.2 NDVI to represent an improvement in forest quality.

2)	Federal Census data organization: Urban Basic Services and Housing indicator, socioeconomic and population:

The data used to infer the values of basic services provision, socioeconomic and population drivers was derived from the Brazilian National Census data (IBGE, 2000 and 2010). Population density, permanent housing unit density, mean income, basic education, and the percentage of houses receiving waste collection, sanitation and water provision services, called basic services in the context of this study, were calculated per 30 m pixel. The Human Development Index is only available at the municipality level. We attributed the HDI for the vector file with the municipality border, and we rasterized (30 m resolution) this file in QGIS. Annual rates of change were then calculated to allow comparability between LULC periods. To infer the BSH, we used only areas with an increase in permanent housing density and basic services provision (See Supplementary Material I at the original publication).

3)	Topographic drivers

To infer the values of the topographic driver, we used the slope data and the Topographic Index Position (TPI) based on the digital elevation model from SRTM (30 m resolution) produced by ALOS (freely available at eorc.jaxa.jp/ALOS/en/about/about_index.htm), and both variables were considered constant from 2005 to 2015 (See Supplementary Material I at the original publication).

basic-services

display_name: basic-services

built-up-classification

display_name: built-up-classification

forest-gain

display_name: forest-gain

forest-persistence

display_name: forest-persistence

land-use-and-cover-change

display_name: land-use-and-cover-change

nature-conservation

display_name: nature-conservation

planning-outcome

display_name: planning-outcome

spatial-modelling

display_name: spatial-modelling

topography

display_name: topography

urban-compactness

display_name: urban-compactness

urban-morphology

display_name: urban-morphology

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Spatially explicit data to evaluate spatial planning outcomes in a coastal region in São Paulo State, Brazil


maintainer: Matthias Haeni

en: relative-humidity long-term par meteorology temperature swiss-forest-lab meteo precipitation climate-change wind-speed

en: Site photo of the forest station (OTB)

en: Site photo of the forest station from above (viewing downwards the slope).

mimetype: image/jpeg

en: Data plot of the forest station (OTB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

mimetype: application/pdf

en: Site photo of the field station (OTF)

en: Site photo of the field station from below (viewing upwards the slope).

en: Field station data (OTF)

media_type: text/csv

en: Data file.

format: CSV

mimetype: text/csv

en: Data plot of the field station (OTF)

en: Site aerial photo (Othmarsingen)

en: Site aerial photo from both Othmarsingen stations. Source: Google. 2016. Site aerial photo from both Othmarsingen stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Forest station data (OTB)

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Othmarsingen in Switzerland where one station is located within a natural deciduous forest stand (OTB) with European beech (_Fagus sylvatica_; 120-140 yrs) and lime trees (_Tilia sp._; 120-140 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, OTF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Othmarsingen is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

temperature

display_name: temperature

wind-speed

display_name: wind-speed

educ

en: Education, culture and sport

en: EnviDat: the Environmental Data Portal

en: Othmarsingen, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1996 onwards


en: switzerland spermatophytes vert01 environmental-dna freshwater sper01 vertebrates edna

en: Data access

en:
Catchment-based sampling of river eDNA integrates terrestrial and aquatic biodiversity of alpine landscapes

From 22-Jun-2020 to 26-Jun-2020, we sampled five sites comprising one low, two intermediate and two high-elevation sites per catchment (Fig. 1a). We visited two catchments per day—one in the morning and one in the afternoon—for a total of ten catchments. All samples per catchment were collected within a maximum four-hour period by three groups of samplers. The intermediate and high-elevation sites were situated along two tributaries leading into the low-elevation site of the river. We used three filters for each relative elevation class and filtered 60 L per relative elevation class. We sampled 30 L per tributary for a combined volume of 60 L at the intermediate and high-elevation sites. In total, 180 L were sampled in total per catchment. A filtration device composed of either the Athena® peristaltic pump (Proactive Environmental Products LLC; 1 L/min nominal flow) or the Subspace® underwater peristaltic pump (Subspace Pictures; 1 L/min nominal flow), combined with a VigiDNA® 0.2 µM cross-flow filtration capsule (VigiDNA, SPYGEN) was used in order to filter a large water volume. We used a finer mesh than the recommended VigiDNA® 0.45 µM cross-flow filtration capsule to maximise the capture of biological material since mountain water does not transport high quantities of sediments. For each filtration capsule, we used disposable sterile tubing. At the end of each filtration, we emptied the water inside the capsules, replaced it with 80 ml of CL1 conservation buffer (SPYGEN), and stored it at room temperature. We followed a strict contamination control protocol in both field and laboratory stages (Goldberg et al. 2016; Valentini et al. 2016). Each water sample was processed using disposable gloves and single-use filtration equipment. We used two primer sets targeting vertebrates (Vert01, forward: − TTAGATACCCCACTATGC, reverse: − TAGAACAGGCTCCTCTAG, mean marker length: 97 bp) and spermatophytes (g-h/Sper01, forward: − GGGCAATCCTGAGCCAA, reverse: CCATTGAGTCTCTGCACCTATC, mean marker length: 48 bp). Though both primers are relatively broad with low species-level resolution, we selected them as the goal was to minimise cost and effort and maximise the identification of a broad range of taxa which can represent the species assemblages of the region. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).

edna

display_name: edna

environmental-dna

display_name: environmental-dna

freshwater

display_name: freshwater

spermatophytes

display_name: spermatophytes

switzerland

display_name: switzerland

vertebrates

display_name: vertebrates

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Environmental DNA Freshwater Switzerland VaudCatchment Modipl 2020


maintainer: Felix Neff

en: insects topsoil-removal grassland functional-diversity long-term-experiment diversity restoration functional-traits

en: Plot information

en:
Information on the experimental plots.

- **Plot**: ID of Plot
- **Treatment**: Experimental treatment
- **Landuse_history**: recent agricultural use for Initial; agricultural use before restoration for all restored sites
- **Last_tilled**: Last time the site was tilled
- **Intensity**: Frequency and intensity of mowing and manuring (*intensity1*: mowing once and no manure, i*ntensity2*: 2-3 times mowing and no manure, *intensity3*: 2-3 times mowing and manuring, *intensity4*: 4-5 times mowing and manuring)
- **Slope**: slope gradient according to classes defined by FAO (1990)
- **X**: X coordinate of the plot (CH1903)
- **Y**: Y coordinate of the plot (CH1903)
- **Cluster**: Spatial cluster of the plot

en: Insect abundance

en:
Abundance of adult insects recorded in the samplings on all experimental sites

- **Plot**: ID of Plot
- **Treatment**: Experimental treatment
- **Species**: Insect species name (following [Fauna Europaea](https://fauna-eu.org))
- **Author**: Author and year of species' description (following [Fauna Europaea](https://fauna-eu.org))
- **Group**: Insect group as used in the analyses
- **Number_Adults**: Number of adult individuals recorded
- **Herbivore**: Logical indicating whether the species is feeding as a herbivore (*TRUE*) or not (*FALSE*)

en: Insect traits

en:
Functional traits of all herbivorous insect species sampled in the study.

- **Species**: Insect species name (following [Fauna Europaea](https://fauna-eu.org))
- **Author**: Author and year of species' description (following [Fauna Europaea](https://fauna-eu.org))
- **Group**: Insect group as used in the analyses
- **Body volume**: Body volume determined by body length, body width and body height (in mm$^3$)
- **Body_shape**: Ratio of body length to body width
- **Hind_femur_shape**: Ratio of hind-femur length to hind-femur width
- **Hind_front_leg_ratio**: Ratio of front-leg length to hind-leg length (leg length = femur length + tibia length)
- **Wing_length_rel**: Ratio of wing length to body length
- **Leg_length_rel**: Ratio of front-leg length to body length (leg length = femur length + tibia length)
- **Antenna_length_rel**: Ratio antenna length to body length
- **Eye_width_rel**: Ratio of eye width to head width (Auchenorrhyncha, Heteroptera) / to head height (Orthoptera)
- **Feeding_specialization**: Insect specialization on food source (*m*: monophagous, *o*: oligophagous, *p*: polyphagous)
- **Feeding_tissue**: Feeding tissue used for feeding (*c*: chewers, *x*: xylem, *p*: phloem, *m*: mesophyll, *m-p/r*: mesophyll as well as phloem and/or reproductive organs, *r*: reproductive organs, *se*: ripe seeds)
- **Hibernation**: Hibernation stage (*e*: egg, *e/n*: egg and nymph, *n*: nymph, *a*: adult)
- **Generations**: Number of generations per year (*1.5* stands for *1-2* generations per year)
- **Moisture_pref_mean**: mean of preferred habitat moistures (*1*: xerophilous, *2*: moderately xerophilous, *3*: moderately mesohygrophilous, *4*: mesohygrophilous, *5*: moderately hygrophilous, *6*: hygrophilous, *7*: moderately hydrophilous, *8*: hydrophilous)
- **Moisture_pref_range**: range of preferred habitat moistures (indicating degree of specialization)

en:
This dataset contains all data, on which the following publication below is based.

**Paper Citation**:

Neff, F., Resch, M. C., Marty, A., Rolley, J. D., Schütz, M., Risch, A. C, Gossner, M. M. 2020. Long-term restoration success of insect herbivore communities in semi-natural grasslands: a functional approach. Ecological Applications, 30, e02133. [10.1002/eap.2133](https://doi.org/10.1002/eap.2133)

Please cite this paper together with the citation for the datafile.

 Methods

 Study site
The study area is situated within and nearby to Eigental nature reserve (47°27’36” to 47°29’06” N, 8°37’12” to 8°37’44” E, 461 to 507 m a.s.l.) in the vicinity of Zurich airport (Canton Zurich, Switzerland). Mean annual precipitation and temperature is 903 ± 136 mm and 9.14°C ± 0.50°C (mean ± SD for 2007-2017 (*MeteoSchweiz 2018*)). In 1967, the Eigental nature reserve was established to protect small and isolated remnants of species-rich, semi-natural grasslands (roughly 12 ha), which were embedded in an otherwise intensively managed landscape. It is characterized by oligo- to mesotrophic Molinion (semi-wet, matrix species *Molinia caerulea*) and Mesobromion (semi-dry, matrix species *Bromus erectus*) meadows (*Delarze et al. 2015*), reflecting small-scale habitat heterogeneity, mainly due to site-specific groundwater levels and slope inclination. As in most Central European grasslands, management is necessary to prevent shrub and tree invasions as well as to secure low levels of available soil nutrients and thus to maintain these species-rich habitats ([*Poschlod and WallisDeVries 2002*](https://doi.org/10.1016/S0006-3207(01)00201-4)).
In 1990, the government of the Canton Zurich decided to enlarge the Eigental nature reserve as a counter measure against degradation and biodiversity loss in semi-natural grasslands due to overutilization and the excessive input of nutrients (mostly nitrogen). Eleven patches of adjacent intensively managed grassland (in total roughly 20 ha) were targeted to be transformed into semi-natural grasslands. As a first restoration measure, fertilization was ceased, and biomass harvested three times to remove excessive soil nutrients from the original system and thus benefit plant species with low competitive ability on the long run. In 1995, the restoration efforts were increased and a large-scale experiment comprising three restoration measures with increasing intervention intensities was implemented:

- **Harvest only**: Initial restoration measures were continued with mowing and removing of the aboveground biomass two times a year (early summer and autumn).
- **Topsoil**: Removal of topsoil, depending on the thickness of the A horizon the upper 10 to 20 cm, in four randomly selected areas within the eleven patches in late autumn 1995. The size of the restoration area depended on individual patch size (2700 to 7000 m2).
- **Topsoil + Propagules**: Plant propagules were added on half of the area where topsoil was removed via application of fresh, seed-containing hay and hand-collected propagules of target species originating from semi-dry and semi-wet species-rich grasslands with local and regional provenance (within radius of 7 to 30 km) (1995, 1996, 1997).

Management of *Topsoil* and *Topsoil + Propagules* started five years after treatment implementation and included yearly mowing and removing of aboveground biomass (late summer or early autumn). The experiment was complemented with intensively managed grassland sites that share the same agricultural history as the restored sites (**Initial**; swards dominated by *Lolium perenne*, *L. multiflorum* and *Trifolium repens*): mowing and subsequent fertilizing (manure) up to five times a year, as well as different tillage regimes. Finally, sites were selected in target semi-dry and semi-wet grasslands (**Target**) located within the Eigental nature reserve and another nature reserve nearby (Altläufe der Glatt; 47°28’29” to 47°27’41” N, 8°31’56” to 8°32’26” E, 418 to 420 m a.s.l.). The selected target sites are mown and aboveground biomass removed once a year in late summer or early autumn. For each of the five treatments, we selected eleven plots (5 m × 5 m) spread across the sites. Altogether, the experiment included 55 plots.

 Arthropod sampling
Aboveground arthropods were sampled using suction sampling on four consecutive days in early July 2017 before the grasslands were mown. Arthropods were sampled in two locations on each 5 m × 5 m plot, once in the south-western and once in the north-eastern corner to account for possible spatial heterogeneity within the plots. Arthropods were sorted to order or lower taxonomic levels and individuals were identified to species level. We focused on three groups (Hemiptera: Auchenorrhyncha, Hemiptera: Heteroptera, Orthoptera),

 Functional traits
We used two sets of functional traits in this study.

**Morphometric traits**:
Body volume, body shape, hind femur shape, hind/front leg ratio, wing length, leg length, antenna length and eye width. We used trait measurements from [*Simons et al. (2016)*](http://dx.doi.org/10.1890/15-0616.1) and [*Neff et al. (2019)*](https://doi.org/10.1007/s10980-019-00872-1) and complemented them with measurements on study specimens. These measurements were conducted using a high-resolution measuring stereo microscope (Leica DVM6, Leica Microsystems) including automated high-resolution photo stacking with the software Leica Application Suite X (LAS X, © 2018 Leica Microsystems CMS GmbH) and Leica Map Premium (Leica Microsystems, © 1996-2017 Digital Surf) at WSL Birmensdorf. The eight morphometric traits were calculated from direct measurements of body parts on specimens of all sampled species. From each species, we measured at least one female and one male specimen. Additionally, for species that show wing dimorphism, we included the different wing morphs and weighted them by their prevalence reported in literature. For few species, of which not all wing morphs were available for measurements (10 cases), we estimated relative wing length from congeneric species or from the literature.

**Life-history traits**
Based on an existing data set collected by [*Gossner et al. (2015)*](http://dx.doi.org/10.1890/14-2159.1). We included traits describing different life-history characteristics of herbivore insect species, namely: feeding specialization, feeding tissue, hibernation stage and number of generations per year, which are related to insect species’ vulnerability to changes in plant community composition, microhabitat use and disturbance tolerance. To represent potential changes in habitat moisture with abandonment of intensive land use (e.g., change in ground-water level), we also included two traits related to preferred habitat moisture of the study species: moisture preference, describing species’ optimum habitat moisture, and moisture range, which describes the species’ range of preferable moisture conditions.

 References

Delarze, R., Y. Gonseth, S. Eggenberg, and M. Vust. 2015. Lebensräume der Schweiz: Ökologie - Gefährdung - Kennarten. 3rd ed. Ott, Bern.

Gossner, M. M., N. K. Simons, R. Achtziger, T. Blick, W. H. O. Dorow, F. Dziock, F. Köhler, W. Rabitsch, and W. W. Weisser. 2015. A summary of eight traits of Coleoptera, Hemiptera, Orthoptera and Araneae, occurring in grasslands in Germany. Scientific Data 2:150013.

MeteoSchweiz. 2018. Klimabulletin Jahr 2017. MeteoSchweiz, Zürich.

Neff, F., N. Blüthgen, M. N. Chisté, N. K. Simons, J. Steckel, W. W. Weisser, C. Westphal, L. Pellissier, and M. M. Gossner. 2019. Cross-scale effects of land use on the functional composition of herbivorous insect communities. Landscape Ecology 34:2001–2015.

Poschlod, P., and M. F. WallisDeVries. 2002. The historical and socioeconomic perspective of calcareous grasslands—lessons from the distant and recent past. Biological Conservation 104:361–376.

Simons, N. K., W. W. Weisser, and M. M. Gossner. 2016. Multi-taxa approach shows consistent shifts in arthropod functional traits along grassland land-use intensity gradient. Ecology 97:754–764.

diversity

display_name: diversity

functional-diversity

display_name: functional-diversity

functional-traits

display_name: functional-traits

grassland

display_name: grassland

insects

display_name: insects

long-term-experiment

display_name: long-term-experiment

restoration

display_name: restoration

topsoil-removal

display_name: topsoil-removal

en: Grassland restoration: insects and insect traits


en: drought bark-beetles extreme-events compound-events protection-forest natural-hazards protective-effect forest-fire

en: Case study website

media_type: text/html

en: Page of the case study on the project website. It includes figures fo all questions of the survey and additional synthesis graphs.

format: HTML

en: Conclusions and recommendations of the project (in German).

en: Factsheet summarising the key results of the study (in German).

en: Factsheet summarising the key results of the study (in Italian).

en: Factsheet summarising the methods used in this project (in German).

en:
This file contains the anonymous answers to the survey for the case study in the protective forest, Val Mesolcina, GR, Switzerland within the BAFU Project "Wenn Risiken kumulieren - Analyse und Umgang mit unerwarteten Ereignissen und kombinierten Risiken".
The survey consists of two parts, based on different concepts: "top-down" and "bottom-up". Answers for both concepts are available in two different worksheets within the Excel file.

format: XLS

en: Factsheet summarising the key results of the study (in French).

en: Description of the study site, extreme event (trigger event) and informations about the survey.

en:
This dataset contains the results of a case study analysing the potential impacts of a compound meteorological extreme event on the protective forest in the Val Mesolcina. These impacts were assessed in an experts survey. 29 Experts from practice, administration and science estimated the probabilities for a loss of the protective function due to a drought-related compound extreme event based on different hazard scenarios. The experts not only assessed these probabilities but also provided estimates about the reliability of the scenarios, other socio-economic consequences and options for adaptation.
This dataset contains the following information:
- Table with all (anonymised) answers from the survey
- Factsheets summarising the results and methods in German, French and Italian
- A detailed description of the study site and survey instructions
- Link to the project website wit illustrations for each individual question of the survey

bark-beetles

display_name: bark-beetles

compound-events

display_name: compound-events

drought

display_name: drought

extreme-events

display_name: extreme-events

forest-fire

display_name: forest-fire

natural-hazards

display_name: natural-hazards

protection-forest

display_name: protection-forest

protective-effect

display_name: protective-effect

educ

en: Education, culture and sport

en: Experts survey protective forest and combined extremes in Val Mesolcina


en: par wind-speed temperature relative-humidity meteo precipitation long-term climate-change meteorology swiss-forest-lab

en: Further details on the data repository

en: Meta data documentation.

en: Field station data (SCF)

en: Data file.

en: Data plot of the forest station (SCB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Site photo of the forest station (SCB)

en: Site photo of the forest station from below (viewing upwards the slope).

en: Data plot of the field station (SCF)

en: Forest station data (SCB)

en: Site aerial photo (Schänis)

en: Site aerial photo from both Schänis stations. Source: Google. 2016. Site aerial photo from both Schänis stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Site photo of the field station (SCF)

en: Site photo of the field station from above (viewing downwards the slope).

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Schänis in Switzerland where one station is located within a natural mixed forest stand (SCB) with European beech (_Fagus sylvatica_; 130-150 yrs), European silver fir (_Abies alba_; 130-150 yrs) and European ash (_Fraxinus excelsior_; 130-150 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, SCF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Schänis is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Schänis, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1998 onwards


en: European Snow Booklet public metadata

en:
The core of the European Snow Booklet (ESB), the country reports of 38 European countries, are based on information and metadata on snow measurements collected through a comprehensive survey, the ESB Questionnaire, between August 2017 and March 2018. The station metadata (for example location, elevation, measurement start date) from each country was provided by one or several institutions responsible for snow observations. By answering the questionnaire the contacts agreed that the information and metadata provided could be presented in the ESB. For cases where institutions indicated that information on station locations could be made publicly available, the metadata for the variables snow depth (HS), depth of snowfall (HN) and water equivalent of the snow cover (SWE), is additionally provided here for download (METADATA.xlsx).
Please note that not all institutions gave permission to publish their station metadata. This metadata has to be requested from the non-personal institution contacts provided in the METADATA.xlsx file. In some cases, however, no institutional contact is available and thus the contact of the country representative who filled in the questionnaire is used.
For current, updated station metadata we refer to the (non-personal) institutional contacts provided in METADATA.xlsx and/or the institution webpages. Note, however, that we cannot guarantee for completeness of the dataset for all countries because operational networks are prone to changes.

en: COST European Snow Booklet (ESB)

en: Please find here the web version of the COST European Snow Booklet (ESB).

en: COST European Snow Booklet (ESB) - DORA Link

en: DORA Link of the COST European Snow Booklet (ESB).

en: European Snow Booklet unpublished metadata

en: The entire station metadata of all European institutions that contributed data is stored in METADATA_unpublished.xlsx. This file, however, cannot be accessed, since not all institutions gave permission to publish their station metadata. If you wish to access the metadata, please send a request to marty@slf.ch stating clearly why you want to access these metadata. NOTE: in this file ONLY station metadata (Lat/Lon/Altitude) is given, NO measured snow depth data.

en: List of authors and list of the editorial board of the European Snow Booklet

en:
Here you can find the list of all lead authors of the different chapters of the European Snow Booklet (ESB).
In addition a list of the editorial board that reviewed the ESB is given.

en:
The European Snow Booklet (ESB) is a book of reference for snow measurements that has been produced through collaboration with many European snow practitioners and snow scientists in the framework of the European Cooperation in Science and Technology (COST) Action ES1404 “A European network for a harmonised monitoring of snow for the benefit of climate change scenarios, hydrology and numerical weather prediction (HarmoSnow)”. The ESB provides a unique collection of information about operational snow observations in the European countries and the methods used to perform basic measurements of snow on the ground: snow depth (HS), depth of snowfall (HN), water equivalent of the snow cover (SWE) and presence of snow on the ground (PSG). Information and station metadata (for example location, elevation) for these basic snow variables were collected through a comprehensive survey, the ESB questionnaire between August 2017 and March 2018. Numerous institutions of 38 European countries provided detailed information describing the status of the operational snow observations and the methods used at the time of the survey. Based on the information provided, a country report was written for each European country. Similarities and differences among the countries, that is, the choice of snow variables to be measured, the measurement principles applied, the number of stations, or the spatial and elevational station distribution are pointed out. Thus the collection of country reports demonstrates the relevance of snow measurements for each country. Thus, the intention of the ESB is to foster better knowledge transfer regarding snow measurements between the snow science and operational communities and to improve the communication of information to the general public.

For detailed information on the European countries, we refer to the ESB, which can be downloaded here (envidat.ch). Please note that the ESB is not a living document and information and station metadata are from August 2017 till March 2018, except for Latvia (metadata updated in December 2018).

depth-of-snowfall

display_name: depth-of-snowfall

harmonisation-of-snow-measurements

display_name: harmonisation-of-snow-measurements

snow-depth

display_name: snow-depth

snow-measurement-methods

display_name: snow-measurement-methods

water-equivalent-of-the-snow-cover

display_name: water-equivalent-of-the-snow-cover

educ

en: Education, culture and sport

en: European Snow Booklet – an Inventory of Snow Measurements in Europe


en: detritus decomposition yellowstone wolf carrion fungi biogeochemical-cycling carcass soil-biodiversity bacteria

en:
Site	ID for different carcasses across the Yellowstone Landscape
Location	Sampling location, either under carcass or control plot
Species	Indicating whether carcass was from bison or elk
Gender	Gener of carcass; F = female, M = male, ? = unknown
Lat	Latitude
Long	Longitude
DSK	Days since kill; in days
Soil.N	Soil N concentration (%)
Soil.C	Soil C concentration (%)
Veg.C	Vegetation C concentration (%); dominant grasses sampled
Veg.N	Vegetation N concentration (%); dominant grasses sampled
Veg.CtoN	Vegetation C to N ratio; dominant grasses sampled
Soil.resp	Soil respiration (g m-2 h-1)
soil.temp	Soil temperature (°C)
Soil.moist	Soil moisture (volumentric; %)
CRR	Cotton rotting rate
bacteria.richness	Bacteria richness
bacteria.diversity	Bacteria diverstiy
fungi.richness	Fungi richness
fungi.diversity	Fungi diversity
bacteria.abundance	Bacteria abundance
fungi.abundance	Fungi abundance

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch, A.C., Frossard, A., Schütz, M., Frey, B., Morris, A.W., Bump, J.K. (accepted) Effects of elk and bison carcasses on soil microbial communities and ecosystem functions in Yellowstone, USA. (accepted). Functional Ecology
doi: ...

Methods
Study area and study sites
This study was conducted in YNP’s Northern Range (NR), located in north-western Wyoming and south-western Montana, USA (~44.9163° N, 110.4169° W). The NR expands over ~1000 km2 and features long cold winters and short dry summers. Grasslands and shrublands dominate the NR that is the home of large migratory herds of bison (winter counts 2017: ~3919 individuals; Geremia, Wallen, & White, 2017) and elk (~5349 individuals) as well as their main predators, approximately five packs of wolves with a total of 33 individuals (Smith et al., 2017). As part of a long-term research program within YNP, wolf predation has been studied since their reintroduction in 1995.
For our study, we received ground-truthed coordinates of bison and elk carcasses from winter 2016/17 (November 2016 through April 2017) from the YNP Wolf Project. Between June 20 and July 1, 2017, we visited 24 carcasses in total. At five sites, we could not sample as the carcasses were no longer found. In total we located remains (hairmats, rumen content, bones, teeth) of 19 adult male and female carcasses (7 bison, 12 elk; Supplementary Table 1). Live body weights of adult bison and elk are approximately 730 kg (male bison), 450 kg (female bison), 330 kg (male elk), and 235 kg (female elk, Meagher, 1973; Quimby & Johnson, 1951).
The kills and subsequent consumption happened between 34 and 173 days prior to our sampling (hereafter “days since kill”, DSK), for which we accounted in our statistics. Note that wolves and other scavengers consumed the soft tissue of the carcasses quickly, hence, there is close to no soft tissue left for decomposition as compared to an intact body left on the soil surface. The 19 carcass sites covered the extent of YNP’s NR, with both bison and elk carcasses showing similar distributions; elevation ranged from 1703 to 2884 m a.s.l. (Supplementary Fig 1 & Supplementary Table 1). The carcasses were all located in grassland or sage-brush shrubland, with or without sparsely scattered trees, and both bison and elk carcasses showed the same distribution of DSK. At each study site, we selected a reference plot (hereafter “control”) that was of comparable size, slope aspect and vegetation to the carcass location (hereafter “carcass”). The control was at least 10 m away (Danell, Berteaux, & Brathen, 2002; Melis et al., 2007) from the carcass itself to ensure the absence of potential direct and indirect carcass effects (paired design; (Bump, Webster, et al., 2009; Bump, Peterson, et al., 2009).

Ecosystem functions and soil properties
We randomly collected 50 g of mineral soil from three locations on both control and carcass plots to a depth of 5 cm with sterile techniques and gently mixed the material to obtain a composite sample. Half the soil sample was immediately bagged in plastic bags (whirl packs), stored in a cooler with ice packs (~5 ºC), sieved (2-mm) and frozen within 4-6 hours of collection to assess soil microbial communities. For this purpose, we extracted total genomic DNA from 0.5 g soil using the PowerSoil DNA Isolation Kit (Qiagen, Hilden, Germany). DNA concentrations were measured using PicoGreen (Molecular Probes, Eugene, OR, USA). PCR amplifications of partial bacterial small-subunit ribosomal RNA genes (region V3–V4 of 16S rRNA) and fungal ribosomal internal transcribed spacers (region ITS2) were performed as described previously (Frey et al., 2016). Each sample consisting of 40 ng DNA was amplified in triplicate and pooled before purification with Agencourt AMPure XP beads (Beckman Colter, Berea, CA, USA) and quantified with the Qubit 2.0 fluorometric system (Life Technologies, Paisley, UK). Amplicons were sent to the Genome Quebec Innovation Center (Montreal, Canada) for barcoding using the Fluidigm Access Array technology and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, CA, USA).
Quality control of bacterial and fungal reads was performed using a customized pipeline (Supplementary Table 2; Frey et al., 2016). Paired-ends reads were matched with USEARCH (Edgar & Flyvbjerg, 2015), substitution errors were corrected using Bayeshammer (Nikolenko, Korobeynikov, & Alekseyev, 2013) and PCR primers were trimmed (allowing for 1 mismatch, read length >300 bp for 16S and >200 bp for ITS primers) using Cutadapt (M. Martin, 2011). Sequences were dereplicated and singleton reads removed prior to clustering into operational taxonomic units (OTUs) at 97% identity using USEARCH (Edgar, 2013). The remaining centroid sequences were tested for the presence of ribosomal signatures using Metaxa2 (Bengtsson-Palme et al., 2015) or ITSx (Bengtsson-Palme et al., 2013). Taxonomic assignments of the OTUs were obtained using Bayesian classifier (Wang, Garrity, Tiedje, & Cole, 2007) with a minimum bootstrap support of 60% implemented in mothur (Schloss et al., 2009) by querying the bacterial and fungal reads against the SILVA Release 128 (Quast et al., 2013) and UNITE 8.0 (Abarenkov et al., 2010) reference databases for 16S and ITS OTUs, respectively.
Abundances of the bacterial 16S rRNA gene and fungal ITS amplicon were determined by quantitative real-time PCR (qPCR) on an ABI7500 Fast Real-Time PCR system (Applied Biosystems, Foster City, CA, USA) as described previously (Frossard et al., 2018). The same primers (without barcodes) and cycling conditions as for the sequencing approach were used for the 16S and ITS qPCR. Three standard curves per target region were obtained using tenfold serial dilutions of plasmids generated from cloned targets (Frey, Niklaus, Kremer, Lüscher, & Zimmermann, 2011). Data were converted to represent mean copy number of targets per gram of soil (dry weight).
The other half of the soil sample was bagged in paper, dried to constant weight at 60°C, passed through a 2 mm sieve and analyzed for total C and N concentration with a CE Instruments NC 2100 soil analyzer (CE Elantech Inc., Lakewood NJ, USA). We also collected 20 mature and undamaged leaves of the dominant grass species growing on control and carcass sites, but taxa were not recorded. The plant material was dried at 60°C, finely ground till homogenized and also analyzed to obtain total C and N concentrations. Soil temperature (10 cm depth) was measured with a waterproof digital thermometer (Barnstead International, Dubuque IA, USA) at three locations each at the control and carcass site. Soil moisture (0 – 10 cm depth) was measured with time domain reflectometry (Field-Scout TDR-100; Spectrum Technologies, Plainfield IL, USA) at five randomly chosen points on control and carcass sites. We measured soil respiration at five randomly chosen points at both control and carcass sites with a PP-Systems SRC-1 soil respiration chamber (closed circuit) attached to a PP-Systems EGM-4 infrared gas analyzer (PP-Systems, Amesbury, MA, USA). For each measurement the soil chamber (15 cm high; 10 cm diameter) was tightly placed on the soil surface, after clipping plants to avoid measuring plant respiration or photosynthesis. Measurements were conducted over 120 s.
In addition, we assessed the decomposition rates of standardized OM using the cotton strip assay (Latter & Howson, 1977; Latter & Walton, 1988). Cotton cloth tensile strength loss (CTSL) is a measure of decomposition, and an index to express the combined effect of soil microclimatic, physical, chemical and biological properties on decomposition while accounting for OM quality (Latter & Walton, 1988; Risch, Jurgensen, & Frank, 2007; Withington & Sanford Jr., 2007). We placed five 20 cm wide x 13 cm long sheets of 100% unbleached cotton cloth (American Type SM 1/18’’, Warp: 34/1, Weft: 20/1, Weave plain, 29.5 picks/cm warp, 22 picks/cm weft, 237 g/m2; Daniel Jenny & Co., Switzerland;) at each carcass and control site vertically into the soil by making slits with a flat spade to a depth of 12 cm. We inserted each cloth with the spade, and then pushed the slit closed to assure tight contact with the soil. The cloths were retrieved after 18 to 27 days. After retrieval, the cloths were air-dried, remaining soil gently removed by hand, and 1.5 cm wide strips were cut at the 3.5-5.0 cm (top) and the 9-10.5 cm (bottom) soil depth. The strips were equilibrated at 50 % relative humidity and 20°C for 48 hours (climate chamber) prior to strength testing (Scanpro Awetron TH-1 tensile strength tester; AB Lorentzen and Wettre, Kista, Sweden). Cotton rotting rate (CRR) = (CTScontrol - CTSfinal/CTSfinal)1/3 * (365/t), where CTScontrol is the cotton tensile strength of a control cloth and CTSfinal the cotton tensile strength of the incubated sample, t is the incubation period in days. Control cloths were inserted into the ground and immediately retrieved to account for tensile strength loss associated with cloth insertion. We averaged the CRR of top and bottom strips for further analyses as no difference was found between the two. All sampling and cloth insertion took place between June 20 and July 1, 2017, cloths were retrieved between July 17 and 20, 2017. Soil respiration, average CRR, vegetation N concentration and vegetation C:N ratio are defined as ecosystem functions, soil C and N concentration, soil temperature and moisture as soil abiotic properties, and bacterial and fungal richness (number of taxa), diversity (Shannon) and abundance as soil biotic properties.

Statistical analyses
Univariate analyses for ecosystem functions, soil biotic and abiotic properties
We tested whether individual ecosystem functions, soil biotic and abiotic properties differed between carcass and control (“Location”), bison and elk (“Species”) and days since kill (“DSK”). For this purpose, we used linear mixed effect models (LMM, “nlme” package v 3.1 – 131.1 in R v 3.4.4; Pinheiro, Bates, DebRoy, & Sarkar, 2018; R Core Team, 2019) with Location, Species, Location x Species and DSK as fixed effects. Site was included as random effect to account for the paired design. We developed a separate model for all dependent variables. All but bacterial richness, fungal richness, fungal diversity and vegetation N concentration were natural-log transformed to meet model assumptions. For each LMM, we calculated contrasts to assess the specific comparisons we were interested in with the “lsmeans” package v 2.27-62 (Lenth & Love, 2018): 1) carcass vs control, 2) carcass bison vs control bison, and 3) carcass elk vs control elk. We also tested whether we had differences between bison and elk carcasses or the sites where bison and elk were killed and included contrasts 4) carcass bison vs carcass elk and 5) control bison vs control elk.
We calculated the log response ratio (LRR = ln[carcass/control]) to obtain carcass effects for all variables for both species separately. LRR < 0 indicates higher value at control compared to carcass, LRR > 0 indicates higher values at carcass compared control. We used LRRs for visualization and to assess spatial patterns in carcass effects across YNP. For this purpose we calculated the Moran’s I statistic for each ecosystem function, soil biotic and abiotic property based on a latitude-longitude matrix with the “moran.test” function in the “spdep” package version 1.1-3 (Bivand et al., 2019).
Multivariate analyses
Rare OTUs, defined as OTUs with a low abundance of reads, were retained in multivariate methods because they only marginally influence these analyses (Gobet, Quince, & Ramette, 2010). Bray–Curtis dissimilarity matrices were generated based on square-root-transformed matrices. We used Principal Coordinate Analyses (PCoA) to assess how soil bacterial and fungal communities differed between control and carcass of bison and elk (“vegan” package v 2.5-4, Oksanen et al., 2019). We then extracted PCoA axes scores 1 and 2 and used LMM (“nlme” package) with Location, Species, Location x Species and DSK as fixed effects. Site was, again, included as random effect. We again calculated the contrasts as described above using the “lsmeans” package. We also assessed how ecosystem functions, and soil abiotic and biotic properties were related to the soil bacteria and fungi community structure associated with bison and elk control and carcasses using the “envfit” function in the “vegan” package (Oksanen et al., 2019).
Indicator species analyses were performed using the multipatt function implemented in the “indicspecies” package version 1.7.6 with 100000 permutations (De Caceres & Jansen, 2016). This step allowed to identify OTUs that led to changes in multivariate patterns between control and carcass of both bison and elk separately (De Cáceres, Legendre, & Moretti, 2010). The multipatt function uses a point biserial correlation coefficient statistical test. Indicator OTUs were defined as bacterial and fungal OTUs with more than 50 sequences, i.e., removing rare taxa and taxa with low abundances containing little indicator information (Rime et al., 2015) and that were significantly correlated with Location (p < 0.05, correlation coefficient > 0.3). A heatmap of these OTUs were generated with the vegan and ggplot2 packages. The indicator analyses were performed in R version 3.3.3 (R Core Team, 2017).

References
Abarenkov, K., Henrik Nilsson, R., Larsson, K.-H., Alexander, I. J., Eberhardt, U., Erland, S., … Kõljalg, U. (2010). The UNITE database for molecular identification of fungi – recent updates and future perspectives. New Phytologist, 186(2), 281–285. doi:10.1111/j.1469-8137.2009.03160.x
Bengtsson-Palme, J., Hartmann, M., Eriksson, K. M., Pal, C., Thorell, K., Larsson, D. G. J., & Nilsson, R. H. (2015). metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data. Molecular Ecology Resources, 15(6), 1403–1414. doi:10.1111/1755-0998.12399
Bengtsson-Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., … Nilsson, R. H. (2013). Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in Ecology and Evolution, 4(10), 914–919. doi:10.1111/2041-210X.12073
Bivand, R., Altman, M., Anselin, L., Assuncao, R., Berke, O., Blanchet, G., … Yu, D. (2019). spdep: Spatial dependence, weighthing schemes, statistics. R package version 1.1-3.
Bump, J. K., Peterson, R. O., & Vucetich, J. A. (2009). Wolves modulate soil nutrient heterogeneity and foliar nitrogen by configuring the distribution of ungulate carcasses. Ecology, 90(11), 3159–3167.
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Edgar, R. C. (2013). UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10, 996.
Edgar, R. C., & Flyvbjerg, H. (2015). Error filtering, pair assembly and error correction for next-generation sequencing reads. Bioinformatics, 31(21), 3476–3482. doi:10.1093/bioinformatics/btv401
Frey, B., Niklaus, P. A., Kremer, J., Lüscher, P., & Zimmermann, S. (2011). Heavy-machinery traffic impacts methane emissions as well as methanogen abundance and community structure in oxic forest soils. Applied and Environmental Microbiology, 77(17), 6060–6068. doi:10.1128/AEM.05206-11
Frey, B., Rime, T., Phillips, M., Stierli, B., Hajdas, I., Widmer, F., & Hartmann, M. (2016). Microbial diversity in European alpine permafrost and active layers. FEMS Microbial Ecology, 92(3), fiw018.
Frossard, A., Donhauser, J., Mestrot, A., Gygax, S., Bååth, E., & Frey, B. (2018). Long- and short-term effects of mercury pollution on the soil microbiome. Soil Biology and Biochemistry, 120, 191–199. doi:https://doi.org/10.1016/j.soilbio.2018.01.028
Geremia, C., Wallen, R., & White, P. J. (2017). Status report of the Yellowstone bison population, September 2017. Yellowstone National Park, Mammoth, WY, USA: National Park Service, Yellowstone Center for Resources.
Gobet, A., Quince, C., & Ramette, A. (2010). Multivariate cutoff level analysis (MultiCoLA) of large community data sets. Nucleic Acids Research, 38(15), e155–e155. doi:10.1093/nar/gkq545
Latter, P., & Howson, G. (1977). The use of cotton strips to indicate cellulose decomposition in the field. Pedobiologia, (17), 145–155.
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Lenth, R., & Love, J. (2018). lsmeans: least-squares means. R package version 2.27-62.
Martin, M. (2011). Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.Journal, 17(1), 10–12.
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Melis, C., Selva, N., Teurlings, I., Skarpe, C., Linnell, J. D. C., & Andersen, R. (2007). Soil and vegetation nutrient response to bison carcasses in Białowieża Primeval Forest, Poland. Ecological Research, 22(5), 807–813. doi:10.1007/s11284-006-0321-4
Nikolenko, S. I., Korobeynikov, A. I., & Alekseyev, M. A. (2013). BayesHammer: Bayesian clustering for error correction in single-cell sequencing. BMC Genomics, 14(1), S7. doi:10.1186/1471-2164-14-S1-S7
Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., … Wagner, H. H. (2019). vegan: community ecology package. R package version 2.5-4.
Pinheiro, J., Bates, D., DebRoy, S., & Sarkar, D. (2018). nlme: Linear and nonlinear mixed effect models. R package version 3.1-131.1.
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., … Glöckner, F. O. (2013). The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research, 41(Database issue), D590–D596. doi:10.1093/nar/gks1219
Quimby, D. C., & Johnson, D. E. (1951). Weights and measurements of Rocky Mountain elk. Journal of Wildlife Management, 15, 57–62.
R Core Team. (2017). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Zurich, Switzerland.
R Core Team. (2019). R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
Rime, T., Hartmann, M., Brunner, I., Widmer, F., Zeyer, J., & Frey, B. (2015). Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield. Molecular Ecology, 24(5), 1091–1108. doi:10.1111/mec.13051
Risch, A. C., Jurgensen, M. F., & Frank, D. A. (2007). Effects of grazing and soil micro-climate on decomposition rates in a spatio-temporally heterogeneous grassland. Plant and Soil, 298(1–2), 191–201. doi:10.1007/s11104-007-9354-x
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., … Weber, C. F. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology, 75(23), 7537–7541. doi:10.1128/AEM.01541-09
Smith, D., Stahler, D., Cassidy, K., Stahler, E., Metz, M., Cassidy, B., … Cato, E. (2018). Yellowstone National Park wolf project annual report 2017. Yellowstone National Park, Mammoth, WY, USA: National Park Service, Yellowstone Center of Resources.
Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73(16), 5261–5267. doi:10.1128/AEM.00062-07
Withington, C., & Sanford Jr., R. (2007). Decomposition rates of buried substances increase with altitude in a forest-alpine tundra ecotone. Soil Biology and Biochemistry, (39), 68–75.

Please cite this paper together with the citation for the datafile.

bacteria

display_name: bacteria

biogeochemical-cycling

display_name: biogeochemical-cycling

carcass

display_name: carcass

carrion

display_name: carrion

decomposition

display_name: decomposition

detritus

display_name: detritus

fungi

display_name: fungi

soil-biodiversity

display_name: soil-biodiversity

wolf

display_name: wolf

yellowstone

display_name: yellowstone

en: Elk and bison carcasses in Yellowstone, USA


snow-depth-mapping

maintainer: Mauro Marty

title_for_slug: snow-depth-mapping

en: avalanche snow-hydrology snow-water-equivalent aerial-imagery snow-depth image-matching dsm

en: Snow depth map 20120320

media_type: image/tiff

en: Snow depth map generated from ADS 80 imagery (CIR). GSD of imagery = 0.25 m

format: TIFF

mimetype: image/tiff

en: Snow depth map 20140417

en: Snow depth map generated from ADS 100 imagery (CIR). GSD of imagery = 0.18 m

en: Snow depth map 20150415

en: Snow depth map 20130415

en: Snow depth map 20160309

en: Snow depth map 20160126

en:
Snow depth map generated from ADS 100 imagery (CIR). GSD of imagery = 0.16 m
Because of very diffuse light conditions at time of image acquisition the quality of the resulting snow depth values are in some regions quite poor.

en: Snow depth map 20100416

en: Snow depth map 20160420

en:
The available datasets are snow depth maps with a spatial resolution of 2m generated from image matching of ADS 80/100 data. Image acquisition took place at peak of winter (time when the thickest snowpack is expected). The snow depth maps are the difference of a summer DSM from the winter DSM of the corresponding date . The summer DSM used is a product of image matching of ADS 80 data from summer 2013. In the available products buildings, vegetation and outliers were masked (set to NoData).
For the elimination of buildings the TLM layer (swisstopo) was used, because this layer might not represent exactly the
state of infrastructure at time of image acquisition, it is possible that mainly in dense settlement some buildings were not successfully masked. For the relevant area above treeline the masking of buildings showed good results. Vegetation got masked for a height above ground > 1m and was detected in a combination of summer and winter data sets. As Outliers were considered unrealistic snow depths caused by a failure of the image matching algorithm. Snow depths > 15m and smaller than < -15m were classified as outliers. Negative snow depth were kept, because of an uncertainty in image orientation accuracy. It is expected that in regions with negative snow depth also positive snow depth are underestimated by the same amount, which means that an estimation of snow volume should be carried out summing up the absolute values of snow depth (also the negative ones). For volume estimation in small regions the user has to take into account, that orientation accuracy of the images is roughly around 1-2 GSD (30cm), which propagates directly to the snow depth product. Areas which are not covered by snow got assigned a value of 0 as snow depth.

The work is published in:

Bühler, Y.; Marty, M.; Egli, L.; Veitinger, J.; Jonas, T.; Thee, P.; Ginzler, C., (2015). Snow depth mapping in high-alpine catchments using digital photogrammetry. Cryosphere, 9 (1), 229-243. doi: 10.5194/tc-9-229-2015

aerial-imagery

display_name: aerial-imagery

avalanche

display_name: avalanche

dsm

display_name: dsm

image-matching

display_name: image-matching

snow-hydrology

display_name: snow-hydrology

snow-water-equivalent

display_name: snow-water-equivalent

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


weissfluhjoch-dataset-for-esm-snowmip

maintainer: Nander Wever

title_for_slug: weissfluhjoch-dataset-for-esm-snowmip

en: snow-models snow esm-snowmip snow-depth weissfluhjoch

en: ini file

en: This ini file is required by data-converter from MeteoIO version 1887 (http://models.slf.ch/p/meteoio/)

en: Conversion script

en:
Use this script to convert WFJ_optimaldataset_v6.smet to wfj.smet, the file that is used for the ESM-SnowMIP project. It also requires the file: WFJ_AirPressure_Data.zip

Use: bash create_wfj_dataset.sh > input/wfj.smet

mimetype: text/x-sh

en: Dataset Weissfluhjoch for ESM-SnowMIP

en: This Weissfluhjoch dataset is a processed version of the Weissfluhjoch dataset version 6 from https://doi.org/10.16904/6. This dataset was specially created for the ESM-SnowMIP project. Here it is documented how this dataset has been created.

esm-snowmip

display_name: esm-snowmip

snow

display_name: snow

snow-depth

display_name: snow-depth

snow-models

display_name: snow-models

weissfluhjoch

display_name: weissfluhjoch

educ

en: Education, culture and sport

en: Weissfluhjoch dataset for ESM-SnowMIP


en: meteorology swiss-forest-lab precipitation long-term climate-change wind-speed par relative-humidity temperature meteo

en: Site photo of the forest station (VOB)

en: Site photo of the forest station from the side.

en: Data plot of the field station (VOF)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Site aerial photo (Vordemwald)

en: Site aerial photo from both Vordemwald stations. Source: Google. 2016. Site aerial photo from both Vordemwald stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Forest station data (VOB)

en: Data file.

en: Field station data (VOF)

en: Data plot of the forest station (VOB)

en: Site photo of the field station (VOF)

en: Site photo of the field stationfrom the side.

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Vordemwald in Switzerland where one station is located within a natural mixed forest stand (VOB) with European silver fir (_Abies alba_; 110 yrs) and oak trees (_Quercus sp._; 190-210 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, VOF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Vordemwald is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Vordemwald, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1996 onwards


maintainer: Francesco Comola

en: sediment saltation wind sand cohesion snow

en: Output of the model simulations

en: Model results on granular splash and saltation process of sand and snow particles

en:
The wind-driven saltation of sand and snow shapes dunes and ripples, generates dust emission, and erodes the surface of the Antarctic ice sheet. Here, we use a model based on the discrete element method to simulate grain-flow interactions and study the effect of particle cohesion on saltation dynamics.

The data contains the model output of granular splash simulations and saltation simulations. Granular splash, the main particle entrainment process in saltation, occurs upon impact of saltating particles with the granular bed. We performed Monte Carlo simulations of granular splash for loose sand grains and for cohesive ice grains. The analysis indicate that different values of cohesion have significant effects not on the number of splashed grains, on the ejection velocity, and the rebound velocity.

In our saltation simulations, we trigger particle movement with a single splash event at the inlet section section and let the system evolve until steady state. Our results show that saltation over cohesive surfaces is difficult to initiate but easy to sustain at low wind speed. The occurrence of transport thus depends on the history of the wind speed, a phenomenon known as hysteresis. We also show that saltation over cohesive surfaces presents higher mass fluxes but requires longer distances to saturate, which increases the size of the smallest stable surface ripples. Our model results have implications for large-scale aeolian processes on Earth and Titan, where sand grains are thought to be very cohesive.

cohesion

display_name: cohesion

saltation

display_name: saltation

sand

display_name: sand

sediment

display_name: sediment

wind

display_name: wind

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Saltation of cohesive granular materials


maintainer: Esther Frei

en: stillberg long-term-experiment mountain-ecology literature-review treeline-ecosystems

en: The Stillberg bibliography (Stillberg_bibliography_v1.zip) comprises a comprehensive list of 276 scientific publications, 91 of them published in peer-reviewed ISI journals (Stillberg_bibliography_data_v1.csv) along with the metadata file (Stillberg_bibliography_metadata_v1.csv). Currently the bibliography comprises literature about the main afforestation experiment, the FACE × warming experiment, the nutrient addition experiment, and the G-TREE experiment, as well as further publications related to the Stillberg research site that have been published until August 2023. The bibliography can be filtered for different categories, e.g., experiment, peer-review, source repository or database, and source title.

en:
 Background information

The Stillberg ecological treeline research site in the Swiss Alps was established in 1975, with the aim to develop ecologically, technically, and economically sustainable reforestation techniques at the treeline to reduce the risk of snow avalanches. In the course of time, additional research aspects gained importance, such as the ecology of the treeline ecotone under global change. Over almost fifty years, research at the Stillberg site combined long-term monitoring of the large-scale high-elevation afforestation with experimental manipulations simulating global change impacts. Besides providing a scientific basis and practical guidelines for high-elevation afforestation, this research has contributed to a comprehensive understanding of ecological processes in the treeline ecotone across different compartments and scales, from individual trees, non-tree vegetation and soils to whole ecosystems, in the context of global change resulting in more than 150 publications.

 Dataset generation

We compiled a comprehensive list of scientific publications covering research at the Stillberg research site by conducting searches in the literature databases Web of Science and Google Scholar, as well as in the Digital Object Repository of the Swiss Federal Institute for Forest, Snow and Landscape Research WSL (DORA). We compiled all publications about the afforestation experiment, the FACE × warming experiment, the nutrient addition experiment, the G-TREE experiment, as well as other studies related to the Stillberg research site.

 Data description

The Stillberg bibliography (Stillberg_bibliography_data_v1.csv) comprises a comprehensive list of 276 scientific publications, 91 of them published in peer-reviewed ISI journals. Currently the bibliography comprises literature about the main afforestation experiment, the FACE × warming experiment, the nutrient addition experiment, and the G-TREE experiment, as well as further publications related to the Stillberg research site that have been published until August 2023. The bibliography can be filtered for different categories, e.g., experiment, peer-review, source repository or database, and source title. The bibliography is described in a metadata file (Stillberg_bibliography_metadata_v1.csv). The bibliography along with the metadata file are provided in a ZIP-folder (Stillberg_bibliography_v1.zip).

literature-review

display_name: literature-review

long-term-experiment

display_name: long-term-experiment

mountain-ecology

display_name: mountain-ecology

stillberg

display_name: stillberg

treeline-ecosystems

display_name: treeline-ecosystems

en: Bibliography of the long-term treeline research site Stillberg, Switzerland


en: antarctica microstructure snow-density snowmicropen snow-density-profile

en: SnowMicroPen pts files and processed txt files

en: Zip archive containing the acquired *.pts files (binary files recorded by the SnowMicroPen), and the converted *.txt files using the SMP.ipynb jupyter notebook (see the python code in the other resources in this dataset)

en: Documentation SnowMicroPen measurements

en: This *.zip archive contains all available documentation of the SnowMicroPen measurements, including the mapping of the SMP measurements in the terrestrial laser scan field at PEA (see documentation for 20161220) and at the Hammarryggen Ice Rise (see documentation for 20190104 and 20190111).

en: List of SnowMicroPen measurements

en: List of all SnowMicroPen measurements, including date and location, and processing status. This list has been generated by the python code (see other resources in this dataset).

en: Python code exported from the Jupyter notebook for processing the SnowMicroPen files

en: Manual snow pits and other snow density measurements

en: Jupyter notebook for processing the SnowMicroPen files.

en: SnowMicroPen (SMP) measurements and manual snowpits from Dronning Maud Land, East Antarctica. Measurements were taken in the vicinity of the Belgium Princess Elisabeth Station (PEA), in a transect towards the coast, and on the Lokeryggen and Hammarryggen Ice Rises near the coast. Measurements were taken during 3 individual campaigns in the 2016-2017, 2018-2019 and 2019-2020 field seasons.

antarctica

display_name: antarctica

microstructure

display_name: microstructure

snow-density

display_name: snow-density

snow-density-profile

display_name: snow-density-profile

snowmicropen

display_name: snowmicropen

en: SnowMicroPen measurements and manual snowpits from Dronning Maud Land, East Antarctica


en: meteoswiss numerical-simulation cosmo-wrf high-resolution complex-terrain

en: Postprocessing

en: Postprocessing scripts to map WRF output on swiss coordinates (see Section 7 in COSMOWRFdocumentation.pdf)

en: COSMO-WRF documentation v1.0

en:
Gerber, Franziska; Sharma, Varun (2018). Running COSMO-WRF on very-high resolution over complex terrain. EnviDat. doi:10.16904/envidat.35

Documentation about the procedure to run COSMO-WRF

en: MeteorologicalData

en: Scripts to process meteorological data (see Section 2 in COSMOWRFdocumentation.pdf).

en: WRFrun

en: Scripts to run COSMO-WRF simulation (see Section 6 in COSMOWRFdocumentation.pdf)

en: WPSrun

en: Scripts to run the WRF pre-processing (WPS) for COSMO-WRF simulation (see Section 5 in COSMOWRFdocumentation.pdf)

en: WPSSetup

en: Scripts that need to be changed to compile WPS (see COSMOWRFdocumentation.pdf, Section 4)

en: StaticData

en:
Scripts to process geographical/static data (see Section 3 in COSMOWRFdocumentation.pdf).
- ascii_to_bin_landuse.f90
- ascii_to_bin_soiltype.f90
- ascii_to_bin_topo_wgs84_ws2sf1.f90
- see_slopes.ncl
- soiltype_writing.py
- toposmooth_wgs84_cosmobound.ncl
- write_geogrid.o

en: This is a technical documentation of the procedure to run the Weather Research and Forecasting (WRF) model over complex alpine terrain using Consortium for Small-Scale Modeling (COSMO) reanalysis by the Federal Office of Meteorology and Climatology (MeteoSwiss) as initial and boundary conditions (COMSO-WRF). The setup is adapted for very high resolution simulations based on COSMO-2 (2.2 km resolution) reanalysis. This document gives an overview over steps to setup COSMO-WRF and adaptations needed to run COSMO-WRF. Additionally, the calculation of precipitation rate at a horizontal plane and remapping COSMO-WRF output on Swiss coordinates are documented.

complex-terrain

display_name: complex-terrain

cosmo-wrf

display_name: cosmo-wrf

high-resolution

display_name: high-resolution

meteoswiss

display_name: meteoswiss

numerical-simulation

display_name: numerical-simulation

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: snow-water-equivalent meteodat-gmbh snow gcos wagital

en:
Total water reserves of the snow cover [mio m3] for Wägital catchment, Switzerland, for reference date April 1. Data is separated in 2 elevation zones 900m-1500m asl and 1500m-2300m asl. Time period 1943-2024, status 2024-04-22.

Funded currently or in the past by:

- Federal Office of Meteorology and Climatology MeteoSwiss in the context of GCOS Switzerland
- Meteodat GmbH
- Institute of Geography, University of Zurich
- WSL Institute for Snow and Avalanche Research SLF
- Institute of Geography, ETH Zurich (IAC ETH Zurich)
- AG Kraftwerk Wägital (AXPO and EWZ)

See also https://www.meteodat.ch/waegital.html

gcos

display_name: gcos

meteodat-gmbh

display_name: meteodat-gmbh

snow

display_name: snow

snow-water-equivalent

display_name: snow-water-equivalent

wagital

display_name: wagital

en: Snow water equivalent for reference date April 1 for Wägital catchment, starting 1943


en: terrestrial-laser-scans sea-ice-elevation polar tls sea-ice

en: Data processing documentation

en: Link to post-processed TLS’s of Antarctic sea ice

en: Post Processed TLS's

en: Compressed dat files

en:
This dataset comprises of a post-processed set of terrestrial laser scans (TLS’s) of Antarctic sea ice obtained during the Sea Ice Physics and Ecosystem Experiment-2 (SIPEX-2, http://seaice.acecrc.org.au/sipex2012/) in September-November 2012. The post-processing steps include the registration of the individual scans into a single 3-dimensional point cloud, the removal of unwanted noise caused by particles in the air (i.e., snow crystals), and the final generation of surface grids based on the cleaned individual point returns. The final product includes the ‘xyz’ coordinates of the individual point measurements, and gridded surfaces covering study areas of 100m x 100 m, and at resolutions of 0.01 m, 0.1 m, 0.25 m, 0.5 m and 1 m for each of the survey dates. Additionally, subgrid statistics that include the mean elevation, standard deviation, minimum and maximum elevations, range, and number of point returns in each gridcell are generated. The final product is provided in space-delimited text files, with the surface grids provided in Digital Terrain Model (DTM) format ready for visualization in any GIS software.

How to cite:
Please also cite the original publication when using this data set.: Trujillo, E., K. Leonard, T. Maksym, and M. Lehning (2016), Changes in snow distribution and surface topography following a snowstorm on Antarctic sea ice, J. Geophys. Res. Earth Surf., 121, doi:[10.1002/2016JF003893](https://dx.doi.org/10.1002/2016JF003893).

polar

display_name: polar

sea-ice

display_name: sea-ice

sea-ice-elevation

display_name: sea-ice-elevation

terrestrial-laser-scans

display_name: terrestrial-laser-scans

tls

display_name: tls

en: High resolution sea ice surface topography from the SIPEX-2 expedition, East Antarctica, 2012


en: ritigraben permafrost permos ground-temperature borehole

en: DATA ACCESS

en: Map of PERMOS borehole network

en: PERMOS DATA POLICY

en:
_ENVIDAT NOTE: Data currently unvailable and measures are being taken to recover and restore the data files._

Processed ground temperature measurements at the Ritigraben permafrost borehole (RIT_0102) in canton Valais, Switzerland. The borehole is located at 2690 m asl on a flat site. The surface material is coarse blocks and borehole depth is 30 m. Thermistors used YSI 44006. Year of drilling 2002. This borehole is part of the Swiss Permafrost network, PERMOS (www.permos.ch). Contact phillips@slf.ch for details of processing applied.

borehole

display_name: borehole

ground-temperature

display_name: ground-temperature

permafrost

display_name: permafrost

permos

display_name: permos

ritigraben

display_name: ritigraben

en: RIT1: Processed permafrost borehole data (2690  m asl), Ritigraben, Switzerland


maintainer: Elisabeth Hafner

en: remote-sensing reliability avalanche avalanche-mapping avalanche-size-estimation

en: AvalancheReliabilityData

en: The .zip contains all data used to conduct the reliability study as well as the results, a detailed description of the included files is contained in the included pdf. All geospatial data is provided in the Swiss Coordinate System: CH1903+ / LV95 (EPSG 2056). For any use of the data the proper citation provided is obligatory!

mimetype: application/x-zip-compressed

en:
This dataset contains the data used and collected to investigate the reliability of avalanche size estimates and avalanche outlines (see related publications). Namely this is

 Avalanche size estimates

* the 10 pictures depicting avalanches
* the survey results from the 170 participants

 Avalanche outlines mapped from oblique photographs
* the pictures of the six avalanches
* the avalanche outlines mapped by the 10 participants
* the reference mapped from the georeferenced photographs

 Avalanche outlines from remotely-sensed imagery
* the orthophotos in the four different resolutions (2m, 1m, 50cm, 25cm)
* the area of interest (AoI) delimiting the research area
* the avalanche mappings in each resolution for all five participants
* the shade masks used to separate illuminated and shaded areas

The acquisition of the orthophotos has been partially supported by the Swiss National Science Foundation (SNF; Grant N°200021_172800).

avalanche

display_name: avalanche

avalanche-mapping

display_name: avalanche-mapping

avalanche-size-estimation

display_name: avalanche-size-estimation

reliability

display_name: reliability

remote-sensing

display_name: remote-sensing

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data reliability study: avalanche size estimates and outlines


en: coral-reef edna teleo environmental-dna indian-ocean laperouse fish-composition marine

en: Data access

en: Please use cyberduck to download for the moment

en:
Fish environmental DNA data set collected in the shallow seamount of La Pérouse located between Madagascar and Réunion Island

In 2019, we sampled the shallow seamount of La Pérouse, located between Madagascar and Réunion Island in the WIO. La Pérouse is an extinct volcano with a summit depth at 60 m below the sea surface. The plateau of the summit has a maximum length of 12 km and a maximum width of 4 km. One side of the seamount might have collapsed in the past, leading to a less common crescent-shaped summit. The abyssal plains that surround this isolated pinnacle are at a depth of 5000 m. Despite its proximity to Réunion Island (160 km northwest), La Pérouse and its surroundings are still poorly studied.
To sample eDNA in this location we used a submersible pump (Subspace, Geneva, Switzerland; nominal flow of ~ 1.0 L/min) to collect samples at various depths during close circuit rebreather dives. The pump has an internal battery and can be activated underwater allowing in situ filtration directly at the targeted habitat and depth. The filtration lasted for 30 min to collect a total water volume of ~ 30 L. During close circuit rebreather dives, water samples from various depths, ranging from 60 to 140 m below the sea surface, were collected using only the Submersible method (eight stations: no replicates). Out of the eight water samples, six were collected during the day, while two were collected at night (IS2_1 at 62 m and IS7_1 at 100–125 m). We applied this filtration protocols to collect and filter water throughout a VigiDNA® 0.2 μM cross-flow filtration capsule (SPYGEN, le Bourget du Lac, France) using disposable sterile tubing for each filtration capsule. After the filtration process, the remaining water in the capsules was emptied. The capsules were then filled with 80 ml of lysis conservation buffer (CL1 buffer SPYGEN, le Bourget du Lac, France) and stored at room temperature in the dark. At La Pérouse, a total of eight water samples were collected during the MONT LA PÉROUSE expedition (https://gombessa-expeditions.com/mont-la-perouse/) on board the ship La Curieuse to the seamount La Pérouse from October 27th to November 5th 2019. We followed a strict contamination control protocol in both field and laboratory stages. Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

coral-reef

display_name: coral-reef

edna

display_name: edna

environmental-dna

display_name: environmental-dna

fish-composition

display_name: fish-composition

indian-ocean

display_name: indian-ocean

laperouse

display_name: laperouse

marine

display_name: marine

teleo

display_name: teleo

en: Environmental DNA Marine France LaPerouse 2019