maintainer: Dominique Weber

en: landsat use-intensity remote-sensing grassland sentinel-2 management mowing land-use

en: Grassland-use intensity map 2018

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2018. See readme file for more details.

format: GeoTIFF

en: Grassland-use intensity map 2021

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2021. See readme file for more details.

en: Preview time of 1st grassland management event 2020

media_type: image/png

en: Spatial distribution of the timing (day of year; DOY) of the first management event for Switzerland and for three zoomed-in regions (a, b, c). The three zoomed-in regions show different grassland-use intensities, which are reflected in the timing of the first event of the year (Weber et al., 2023; IN REVIEW)

format: PNG

en: Preview number of grassland management events 2020

en: Spatial distribution of the number of management events for Switzerland and for three zoomed-in regions (a, b, c). The three zoomed-in regions show different grassland-use intensities, which are reflected in the distribution of management frequency (Weber et al., 2023; IN REVIEW)

en: Grassland-use intensity map 2020

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2020. See readme file for more details.

en: Readme

en: Metadata and description of the maps and webcam-based reference data.

en: Webcam-based reference data

en: Webcam-based reference data from 2020 and 2021 (see readme).

en: Grassland-use intensity map 2019

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2019. See readme file for more details.

en:
A rule-based algorithm [(Schwieder et al., 2022)](https://doi.org/10.1016/j.rse.2021.112795) was used to produce annual maps for 2018–2021 of grassland-management events, i.e. mowing and/or grazing, for Switzerland using Sentinel-2 and Landsat 8 satellite time series. All satellite images were processed with the [FORCE](https://force-eo.readthedocs.io) framework.

The resulting maps provide information on the number and timing of grassland-management events at a spatial resolution of 10 m × 10 m for the whole of Switzerland. For the final maps, permanent grasslands were masked using a variety of land-use layers, according to [Huber et al. (2022)](https://doi.org/10.1002/rse2.298) but replacing the crop mask with the agricultural-use data from the cantons.

We assessed the detection of management events based on independent reference data, which we acquired from daily time series of publicly available webcams that are widely distributed across Switzerland. We further tested the ecological relevance of the generated intensity measures in relation to nationwide biodiversity data (see [Weber et al., 2023](https://doi.org/10.1002/rse2.372)).

The webcam-based reference data used for verification was subsequently added on 14.02.2024.

grassland

display_name: grassland

land-use

display_name: land-use

landsat

display_name: landsat

management

display_name: management

mowing

display_name: mowing

remote-sensing

display_name: remote-sensing

use-intensity

display_name: use-intensity

en: Grassland-use intensity maps for Switzerland


automatic-classification-of-avalanches

maintainer: Alec van Herwijnen

title_for_slug: automatic-classification-of-avalanches

en: machine-learning localization seismic monitoring avalanche

state: active

type: dataset

en:
This tar file contains classification results for two seismic geophone arrays deployed above Davos, Switzerland. The of the first array located at the Dischma Valley was used to automatically identify all seismic events produced by avalanches, whereas the classification perfomed at the second array located at the Wannengrat field site was used to identify airplanes and earthquakes.
Furthermore, this tar file also contains the median back-azimuth of all classified events at the Dischma field site.

format: SERVICE

mimetype: application/x-tar

en: This dataset contains the classification and localization results obtained during the automatic classification of avalanches during the winter season 2017.

avalanche

display_name: avalanche

localization

display_name: localization

machine-learning

display_name: machine-learning

monitoring

display_name: monitoring

seismic

display_name: seismic

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Automatic Classification of Avalanches


swiss-fluxnet-site-lageren

maintainer: EnviDat Support

title_for_slug: swiss-fluxnet-site-lageren

en: eddy-covariance swiss-forest-lab forest swiss-fluxnet greenhouse-gas meteorological-measurements flux

en: Site description

en: Data access

en: The flux and meteo data of the Swiss FluxNet site Lägeren are openly available from the European Fluxes Database Cluster.

en: Fluxnet2015 dataset

en: The flux and meteo data of the Swiss FluxNet site Lägeren are also part of the Fluxnet2015 dataset.

en:
The Swiss FluxNet Site Lägeren is a managed mixed deciduous mountain forest located on the steep Lägeren mountain (NW of Zurich, Swiss Plateau). The forest is highly diverse, dominated by beech, but also including ash, maple, spruce and fir trees. Eddy covariance flux measurements were started in April 2004. The site was part of the international CarboEurope IP network and the National Air Pollution Monitoring Network (NABEL). In addition to Swiss FluxNet, the site is part of the Long-term Forest Ecosystem Research (LWF) of WSL and the biological drought and growth indicator network (TreeNet) of WSL.

Measurements

- Ecosystem flux measurements of CO2, H2O vapour are performed with the eddy-covariance method. This method is based on measurements of trace gas mixing ratios, using infrared gas analyzers (for CO2, H2O vapor), combined with wind speed and wind direction measurements, using 3D sonic anemometers. To resolve the short-term turbulent fluctuations in the atmosphere, very fast measurements are needed: we measure at 10-20 Hz, i.e., 10-20 times per second. To assess the energy budget of each ecosystem, also radiation sensors and soil climate profiles are installed at the site.
- Sub-canopy eddy fluxes (CO2, H2O), soil respiration campaigns
- Continuous CO2 profile measurements.
- Auxiliary micrometeorology and soil climate measurements.

Data availability

All data are available from the European Fluxes Database Cluster, but are also part of Fluxnet2015 dataset.

Data policy

ICOS data license:
[https://www.icos-cp.eu/data-services/about-data-portal/data-license](https://www.icos-cp.eu/data-services/about-data-portal/data-license)

Detailed site info:
[https://www.swissfluxnet.ethz.ch/index.php/sites/ch-lae-laegeren/site-info-ch-lae//](https://www.swissfluxnet.ethz.ch/index.php/sites/ch-lae-laegeren/site-info-ch-lae/)

eddy-covariance

display_name: eddy-covariance

flux

display_name: flux

forest

display_name: forest

greenhouse-gas

display_name: greenhouse-gas

meteorological-measurements

display_name: meteorological-measurements

swiss-fluxnet

display_name: swiss-fluxnet

swiss-forest-lab

display_name: swiss-forest-lab

en: Swiss FluxNet Site Lägeren


maintainer: Christoph Marty

en: snow water-cycle hydrology snowfall climate-change-impacts

en: Synthesis report chapter

media_type: application/pdf

format: PDF

mimetype: application/pdf

en: DORA Persistent URL

en:
This report was prepared as one of the synthesis report chapters of the Hydro-CH2018 project of the Federal Office for the Environment (FOEN). An important feature of snow cover is the fact that its volume and duration is subject to large year-to-year fluctuations. As frozen precipitation, snow cover is nothing other than a natural water reservoir that delays precipitation to runoff and is thus of outstanding importance for the seasonal water balance in Switzerland. Over a whole year, approximately 40% (22 km3) of the annual runoff currently comes from snow melting and only 1% from glacier melting. Typically, the snow cover in the Alpine region builds up over the autumn and winter months, reaches its maximum between February and May, depending on the altitude, and dominates the runoff processes during melting in the following spring and summer months.
Due to the great dependence on minus temperatures and precipitation, the snow cover reacts sensitively to temperatures above 0° Celsius and more or less precipitation. Due to climate change and the associated warming, the proportion of precipitation that falls as snow decreases measurably. In addition to this reduction in snowfall, the warmer temperatures also cause the snow cover to melt more quickly. The decline in snowfall has so far mainly affected lower altitudes, where winter temperatures often reach positive levels.
As climate change progresses, this trend is likely to continue and above all affect higher zones. Even at higher altitudes, the snow cover will then start later, melt away earlier and is increasingly no longer permanently present. This development will also have an effect on the water bodies. Today nival regimes, i.e. regimes shaped by snow, are shifting towards pluvial regimes, i.e. regimes dominated by rain. Overall, winter runoff increases, summer runoff decreases. By the end of the century, the proportion of runoff from snowmelt will decrease throughout Switzerland, albeit to a lesser extent than the proportion from glacier melt.

climate-change-impacts

display_name: climate-change-impacts

hydrology

display_name: hydrology

snow

display_name: snow

snowfall

display_name: snowfall

water-cycle

display_name: water-cycle

en: Snow and the water cycle in a changing climate


en: wind-speed meteo meteorology precipitation climate-change par swiss-forest-lab temperature long-term relative-humidity

en: Data plot of the field station (NOF)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Data plot of the forest station (NOB)

en: Site photo of the field station (NOF)

en: Site photo of the field station from the side.

mimetype: image/jpeg

en: Forest station data (NOB)

media_type: text/csv

en: Data file.

format: CSV

mimetype: text/csv

en: Site photo of the forest station (NOB)

en: Site photo of the forest station from the side.

en: Field station data (NOF)

en: Site aerial photo (Novaggio)

en: Site aerial photo from both Novaggio stations. Source: Google. 2016. Site aerial photo from both Novaggio stations. Retrieved November 15, 2016, from https://www.google.ch/maps

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Novaggio in Switzerland where one station is located within a natural deciduous forest stand (NOB) with Turkey oak (_Quercus cerris_; 70 yrs), sweet chestnut (_Castanea sativa_; 90 yrs) and silver birch (_Betula pendula_; 70 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, NOF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Novaggio is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

temperature

display_name: temperature

wind-speed

display_name: wind-speed

educ

en: Education, culture and sport

en: Novaggio, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1996 onwards


en: snow-distribution canopy-height snow-depth forest-structure airborne-laser-scanning

en: Snow depth maps

media_type: application/zip

en: Snow depth maps from two snow-on flights at each of the three field areas Davos (March 20th and 31st 2017), Engadien (March 20th and 31st, 2017) and Grand Mesa (February 8th and 16th, 2017)

format: ZIP

mimetype: application/zip

en: Readme

media_type: text/plain

format: TXT

mimetype: text/plain

en: Canopy height maps

en: Canopy height maps of each of the three field areas Davos, Engadine and Grand Mesa

en: Terrain elevation maps

en: Digital elevation model computed from snow-off flights for each of the field areas Davos, Engadine and Grand Mesa

en:
This dataset includes snow depth, canopy height and terrain elevation maps of forest stands in the Grisons (CH) and at Grand Mesa (CO,USA) derived from airborne lidar. Data were acquired i) within a pilot mission of NASA's Airborne Snow Observatory in the Swiss Alps in March 2017 and ii) during NASA’s SnowEx campaign at Grand Mesa in February 2017. Snow depth maps are available for two dates separated by approx.1 week, and include an area of ca. 0.5km2 for each of the three sites Davos, Engadine and Grand Mesa.
All data were presented and analyzed in the publication 'Revisiting Snow Cover Variability and Canopy Structure within Forest Stands: Insights from Airborne Lidar Data' (Mazzotti et al., 2019, WRR, doi: 10.1029/2019WR024898). This publication must be cited when using this dataset.

Paper Citation:
 > _Giulia Mazzotti; William Ryan Currier; Jeffrey S. Deems; Justin M. Pflug; Jessica D. Lundquist; Tobias Jonas (2019). Revisiting Snow Cover Variability and Canopy Structure Within Forest Stands: Insights From Airborne Lidar Data. Water Resources Research, 55, 6198– 6216, [doi: 10.1029/2019WR024898](https://doi.org/10.1029/2019WR024898)._

airborne-laser-scanning

display_name: airborne-laser-scanning

canopy-height

display_name: canopy-height

forest-structure

display_name: forest-structure

snow-depth

display_name: snow-depth

snow-distribution

display_name: snow-distribution

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: ALS-based snow depth and canopy height maps from flights in 2017 (Grisons, CH and Grand Mesa, CO)


maintainer: Loïc Pellissier Pellissier

en: functional-traits herbivores-communities plant-herbivore-interactions community-indices elevation environmental-gradients alps

en: Orthoptera traits

en: Orthoptera functional traits (incisive mandibular strength averaged by species)

en: Orthoptera surveys

en: Species inventories of Orthoptera

en: Plant traits

en: Plant functional traits (SLA, LDMC, carbon and nitrogen content, punch strenght; averaged by species)

en: Vegetion surveys

en: Species inventories of plants

en: Nematode surveys

en: Surveys of soil nematode along elevation

en: Study sites

en: Coordinates and elevation of the study sites

en: Despite the common role of above- and below-ground herbivore communities in mediating ecosystem functioning, our understanding of the variation of species communities along natural gradient is largely strongly biased toward aboveground organisms. This dataset enables to study the variations in assemblages of two dominant groups of herbivores, namely, aboveground orthoptera and belowground nematodes together with their food plants. Herbivores and plant surveys were conducted in 48 natural grasslands along six elevation gradients, selected to span the major macro-climatic and environmental conditions of the Swiss Alps. It compiles herbivores and plant surveys, information on the study sites as well as plant and herbivores functional traits sought to be involved in trophic interactions and to respond to climatic variation along the elevation. Plant functional traits considered are the SLA, the LDMC, the C/N content, the punch strength (i.e. force required to pierce the leave lamina), the mandibular strength for Orthoptera insect. Data were collected during the summer 2016 and 2017.

alps

display_name: alps

community-indices

display_name: community-indices

elevation

display_name: elevation

environmental-gradients

display_name: environmental-gradients

functional-traits

display_name: functional-traits

herbivores-communities

display_name: herbivores-communities

plant-herbivore-interactions

display_name: plant-herbivore-interactions

en: Above- and below-ground herbivore communities along elevation


en: shortwave-radiation incoming weissfluhjoch outgoing longwave-radiation

en: DATA ACCESS

en: Processing doc

en: Metadata

en: Parameter file

en:
Corrected incoming and outgoing shortwave and longwave 2 min radiation measurements at the Weissfluhjoch summit, Davos, CH.

 References
1. Marty, C., Philipona, R., Frohlich, C., Ohmura, A.. Altitude dependence of surface radiation fluxes and cloud forcing in the alps: results from the alpine surface radiation budget network. 2002. Theoretical and Applied Climatology. Volume 72. Issue 3-4. 137-155. http://dx.doi.org/10.1007/s007040200019. 10.1007/s007040200019.
2. Christoph Marty. Surface Radiation, Cloud Forcing and Greenhouse Effect in the Alps. 2000. Institute fuer Klimaforschung ETH. Zuercher Klima-Schriften. Volume 79. http://e-collection.library.ethz.ch/eserv/eth:23491/eth-23491-01.pdf.

incoming

display_name: incoming

longwave-radiation

display_name: longwave-radiation

outgoing

display_name: outgoing

shortwave-radiation

display_name: shortwave-radiation

weissfluhjoch

display_name: weissfluhjoch

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: ASRB_WFJ: Shortwave and longwave radiation measurements (2 min) at the Weissfluhjoch research site, Davos


en: visual-attractiveness perception-of-ecosystem-services nfi-photos adults-and-teenagers online-questionnaire-survey

en: Dataset in csv-format

en: Questionnaire German

en: Questionnaire French

en: SPSS-Dataset

en: Questionnaire Italian

en: Codebook to SPSS-file

en: This questionnaire survey was conducted as an online survey and aimed at investigating the relationship between physical forest characteristics, visual attractiveness of forest and the perception of ecological and cultural ecosystem services in urban forests. Each participant was shown 6 photos out of a pool of 50 photos taken from the Swiss National Forest Inventory (NFI) database. Physical forest characteristics were derived from the photos. The study was conducted as part of the "WaMos meets LFI" (WML) project.

adults-and-teenagers

display_name: adults-and-teenagers

nfi-photos

display_name: nfi-photos

online-questionnaire-survey

display_name: online-questionnaire-survey

perception-of-ecosystem-services

display_name: perception-of-ecosystem-services

visual-attractiveness

display_name: visual-attractiveness

en: Relationship between physical forest characteristics, visual attractiveness and perception of ecosystem services in urban forests


maintainer: Yohann Chauvier

en: point-process-model plant-species covariate-correction background-data survey-effort independent-dataset cluster random-stratified-sampling environmental-stratification target-group

en: Non-copyright data, scripts, diversity outputs

en:
Aim: While species distribution models (SDMs) are standard tools to predict species distributions, they can suffer from observation and sampling biases, particularly presence-only SDMs that often rely on species observations from non-standardized sampling efforts. To address this issue, sampling background points with a target-group strategy is commonly used, although more robust strategies and refinements could be implemented. Here, we exploited a dataset of plant species from the European Alps to propose and demonstrate efficient ways to correct for observer and sampling bias in presence-only models.

Innovation: Recent methods correct for observer bias by using covariates related to accessibility in model calibrations (classic bias covariate correction, Classic-BCC). However, depending on how species are sampled, accessibility covariates may not sufficiently capture observer bias. Here, we introduced BCCs more directly related to sampling effort, as well as a novel corrective method based on stratified resampling of the observational dataset before model calibration (environmental bias correction, EBC). We compared, individually and jointly, the effect of EBC and different BCC strategies, when modelling the distributions of 1’900 plant species. We evaluated model performance with spatial block split-sampling and independent test data, and assessed the accuracy of plant diversity predictions across the European Alps.

Main conclusions: Implementing EBC with BCC showed best results for every evaluation method. Particularly, adding the observation density of a target group as bias covariate (Target-BCC) displayed most realistic modelled species distributions, with a clear positive correlation (r≃0.5) found between predicted and expert-based species richness. Although EBC must be carefully implemented in a species-specific manner, such limitations may be addressed via automated diagnostics included in a provided R function. Implementing EBC and bias covariate correction together may allow future studies to address efficiently observer bias in presence-only models, and overcome the standard need of an independent test dataset for model evaluation.

background-data

display_name: background-data

cluster

display_name: cluster

covariate-correction

display_name: covariate-correction

environmental-stratification

display_name: environmental-stratification

independent-dataset

display_name: independent-dataset

plant-species

display_name: plant-species

point-process-model

display_name: point-process-model

random-stratified-sampling

display_name: random-stratified-sampling

survey-effort

display_name: survey-effort

target-group

display_name: target-group

en: Novel methods to correct for observer and sampling bias in presence-only species distribution models


en: budburst phenology spongy-month chilling hatch

en: Phenology and performance/preference tests Data

en:
-"Synchronex_Cuttings_Pheno.txt" provides the budburst date ('Stage 2') of each twig of the six studies species in the four different temperature treatments ("ambient", "a+5"=Ambient +5°C, 'Greenhouse-5'= Greenhouse at temperature >5°C, 'Greenhouse_10' = Greenhouse at temperature >10°C); 'Success' give the percentage of buds within the twig that succeeded to reach at least stage 2 during the experiment.

'Synchronex-Gypsy.txt' provides the number of eggs that have hatched at each monitoring date (Day of the year in columns); "DOY_hatch_1" corresponds to the first DOY when at least one egg has hatched; "Replicate_egg_mass" correspond to the egg mass replicate (1 to 5)

'PerformanceTest_GypsyMoth.txt' provides the biomass in mg of the caterpillars fed with fresh leaves of each tested tree species during one week. "Fresh_alive" is the biomass of only the living caterpillars after 1 week and "Freshpermoth" corresponds the weight per living caterpillar (Fresh alive/Nalive)

'PreferenceTest_All_species.txt' provides the total surface of leaf disc of each tested tree species remaining after exposing 5 caterpillars to these leaves during 24H. "Total_area" is the surface of the disc of each species measured after 24h exposed to the spongy moth first instars. For each species 'control' means the surface of the disc after 24H without any exposure to the larvae. 'EatenPercent correspond to the percentage surface loss compared to the control.

en: Temperature data Spongy moth experiment

en:
4 files with hourly temperature recorded at the height of buds in each of the four temperature treatments:
- Winter6: greenhouse where temperature was kept >6°C over winter
- Winter10: greenhouse where temperature was kept >10°C over winter
- OTC_Ambient: Open Top Chamber at Ambient temperature
- OTC_Warm: Open Top Chamber at +3.5°C warmer temperature

en: 3 R-Scripts used for the analyses of the temperature, phenology and performance/preference tests

en:
The files correspond to the data and R-script used for the analyses of the following paper "Feasting on the ordinary or starving for the exceptional: phenological synchrony between spongy moth and budburst of European trees in a warmer climate" published in Ecology and Evolution by Vitasse et al. 2023.
There are three zip files corresponding to the Temperature data, phenology/preference/performance tests and R-Scripts for the analyses.

Input data:
'Synchrony_Cuttings_Pheno.txt':

budburst

display_name: budburst

chilling

display_name: chilling

hatch

display_name: hatch

phenology

display_name: phenology

spongy-month

display_name: spongy-month

educ

en: Education, culture and sport

en: Synchrony between spongy moth hatching and leaf phenology of temperate trees


maintainer: Matthias Haeni

en: swiss-forest-lab par temperature wind-speed long-term meteorology relative-humidity meteo precipitation climate-change

en: Forest station data (ALB)

en: Data plot of the forest station (ALB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Site aerial photo (Alpthal)

en: Site aerial photo from the Alpthal forest station. Source: Google. 2016. Site aerial photo from the Alpthal forest station. Retrieved November 11, 2016, from https://www.google.ch/maps

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for one meteorological station in Alpthal in Switzerland which is located within a natural coniferous forest (ALB) with Norway spruce (_Picea abies_; 180-230 yrs) as dominant tree species. The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Alpthal is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Alpthal, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


en: shortwave-radiation radiation weisfluhjoch longwave-radiation davos

en: Processing doc

en: Description of processing code that was ported to R by P. Frei (2016).

en: Metadata

en: DATA ACCESS

en: ASRB radiation station at the Weissfluhjoch versuchsfeld.

en: Parameter file

en: Description of ASRB parameters.

en:
Incoming and outgoing shortwave and longwave 2 min radiation measurements at the Weissfluhjoch research site, Davos, CH. The experimental site at the Weissfluhjoch (WFJ, 46.83 N, 9.81 E) is located at an altitude of 2540 m in the Swiss Alps near Davos. During the winter months, almost all precipitation falls as snow at this altitude. As a consequence, a continuous seasonal snow cover builds up every winter, with a maximum snow height ranging from 153–366 cm over the period 1934–2012. The measurement site is located in an almost flat part of a southeast oriented slope.

 References
1. Marty, C., Philipona, R., Frohlich, C., Ohmura, A.. Altitude dependence of surface radiation fluxes and cloud forcing in the alps: results from the alpine surface radiation budget network. 2002. Theoretical and Applied Climatology. Volume 72. Issue 3-4. 137-155. http://dx.doi.org/10.1007/s007040200019. 10.1007/s007040200019.
2. Christoph Marty. Surface Radiation, Cloud Forcing and Greenhouse Effect in the Alps. 2000. Institute fuer Klimaforschung ETH. Zuercher Klima-Schriften. Volume 79. http://e-collection.library.ethz.ch/eserv/eth:23491/eth-23491-01.pdf.

davos

display_name: davos

longwave-radiation

display_name: longwave-radiation

radiation

display_name: radiation

shortwave-radiation

display_name: shortwave-radiation

weisfluhjoch

display_name: weisfluhjoch

en: ASRB_WFJVF: Shortwave and longwave radiation measurements (2 min) at the Weissfluhjoch research site, Davos


en: terrestiral-laserscanning depth-of-snowfall gridded-data terrestrial-laser-scans antarctica

en: Scan from 2 January 2019, 10 cm resolution

en: Scan from 21 December 2018, 1 mm resolution

en: Scan from 11 January 2019, 10 cm resolution, version 2

en: Deprecated: Scan from 11 January 2019, 10 cm resolution, version 1

en: This resource is deprecated. It contains erroneous data.

en: Scan from 27 December 2018, 1 mm resolution

en: Scan from 21 December 2018, 10 cm resolution

en: Scan from 4 January 2019, 10 cm resolution

en: Scan from 2 January 2019, 1 mm resolution

en: Scan from 27 December 2018, 10 cm resolution

en: Scan from 4 January 2019, 1 mm resolution

en: Scan from 11 January 2019, 1 mm resolution

en:
Surface topography maps (spatial extent: 400 m x 400 m) obtained at approximately 300 m from the top of the Hammarryggen Ice Rise in Dronning Maud Land, East Antarctica, using a Riegl VZ-6000 Terrestrial Laser Scanner (TLS). Scans were obtained on 5 days in the 2018-2019 Austral summer: on December 21 and 27, and January 2, 4 and 11. By using reflectors installed on bamboo poles, scans were registered with respect to the reflectors, such that the difference between two successive scans reveals the spatial patterns of erosion and deposition of snow. On each scan day, we used multiple scan positions to create one combined point cloud. After applying an octree filter on the point cloud, a 3D surface was obtained. For each day, the dataset contains a 1 mm and a 10 cm octree filter resolution file, only including points in a 400 m x 400 m area centered around the scan positions.

Notes:

* All files in the dataset are in the same coordinate system. However, this coordinate system is arbitrary (i.e., not related to any global coordinate system).

* From the installed reflectors, 4 reflectors could be used over the full period. The scan accuracy is generally higher within the area enclosed by the reflectors.

* The scans from January 2 were found to have exhibited small tilt during the scan and are of lesser accuracy.

* By walking along fixed corridors, disturbance of the snow was limited.

antarctica

display_name: antarctica

depth-of-snowfall

display_name: depth-of-snowfall

gridded-data

display_name: gridded-data

terrestiral-laserscanning

display_name: terrestiral-laserscanning

terrestrial-laser-scans

display_name: terrestrial-laser-scans

educ

en: Education, culture and sport

en: Terrestrial laser scans on Hammarryggen Ice Rise, Dronning Maud Land, East Antarctica


data-interactive-avalanche-segmentation

title_for_slug: data-interactive-avalanche-segmentation

en: interactive segmentation snow deep-learning avalanche

en:
Images and corresponding avalanche annotations used for interactive avalanche segmentation:
SLF train, vali and test
WebNew
GroundPic
UserPic
UIBK dataset: List of images used
Pictures are from SLF (mostly from the Dischma Cams) if not otherwise indicated. If used, the data needs to be properly cited!

avalanche

display_name: avalanche

deep-learning

display_name: deep-learning

interactive

display_name: interactive

segmentation

display_name: segmentation

snow

display_name: snow

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data interactive avalanche segmentation


maintainer: Sofia Pagliarin

en: barcelona milan imperviousness copernicus urban-atlas soil-sealing

en: Information on data sources

en: Shareable project in Esri ArcGIS format including the HRL IMD data in raster format for each of the territorial boundaries as specified in letter a)-h), see Dataset description

en:
Dataset description

This dataset is a recalculation of the Copernicus 2015 high resolution layer (HRL) of imperviousness density data (IMD) at different spatial/territorial scales for the case studies of Barcelona and Milan. The selected spatial/territorial scales are the following:

 * a)	Barcelona city boundaries
 * b)	Barcelona metropolitan area, Àrea Metropolitana de Barcelona (AMB)
 * c)	Barcelona greater city (Urban Atlas)
 * d)	Barcelona functional urban area (Urban Atlas)
 * e)	Milan city boundaries
 * f)	Milan metropolitan area, Piano Intercomunale Milanese (PIM)
 * g)	Milan greater city (Urban Atlas)
 * h)	Milan functional urban area (Urban Atlas)

In each of the spatial/territorial scales listed above, the number of 20x20mt cells corresponding to each of the 101 values of imperviousness (0-100% soil sealing: 0% means fully non-sealed area; 100% means fully sealed area) is provided, as well as the converted measure into squared kilometres (km2).

 Dataset composition

The dataset is provided in .csv format and is composed of:

_IMD15_BCN_MI_Sources.csv_: Information on data sources

 _IMD15_BCN.csv_: This file refers to the 2015 high resolution layer of imperviousness density (IMD) for the selected territorial/spatial scales in Barcelona:
 * a)	Barcelona city boundaries (label: bcn_city)
 * b)	Barcelona metropolitan area, Àrea metropolitana de Barcelona (AMB) (label: bcn_amb)
 * c)	Barcelona greater city (Urban Atlas) (label: bcn_grc)
 * d)	Barcelona functional urban area (Urban Atlas) (label: bcn_fua)

 _IMD15_MI.csv_: This file refers to the 2015 high resolution layer of imperviousness density (IMD) for the selected territorial/spatial scales in Milan:
 * e)	Milan city boundaries (label: mi_city)
 * f)	Milan metropolitan area, Piano intercomunale milanese (PIM) (label: mi_pim)
 * g)	Milan greater city (Urban Atlas) (label: mi_grc)
 * h)	Milan functional urban area (Urban Atlas) (label: mi_fua)

_IMD15_BCN_MI.mpk_: the shareable project in Esri ArcGIS format including the HRL IMD data in raster format for each of the territorial boundaries as specified in letter a)-h).

Regarding the territorial scale as per letter f), the list of municipalities included in the Milan metropolitan area in 2016 was provided to me in 2016 from a person working at the PIM.

In the IMD15_BCN.csv and IMD15_MI.csv, the following columns are included:

 * Level: the territorial level as defined above (a)-d) for Barcelona and e)-h) for Milan);
 * Value: the 101 values of imperviousness density expressed as a percentage of soil sealing (0-100%: 0% means fully non-sealed area; 100% means fully sealed area);
 * Count: the number of 20x20mt cells corresponding to a certain percentage of soil sealing or imperviousness;
 * Km2: the conversion of the 20x20mt cells into squared kilometres (km2) to facilitate the use of the dataset.

 Further information on the Dataset

This dataset is the result of a combination between different databases of different types and that have been downloaded from different sources. Below, I describe the main steps in data management that resulted in the production of the dataset in an Esri ArcGIS (ArcMap, Version 10.7) project.

 1. The high resolution layer (HRL) of the imperviousness density data (IMD) for 2015 has been downloaded from the official website of Copernicus. At the time of producing the dataset (April/May 2021), the 2018 version of the IMD HRL database was not yet validated, so the 2015 version was chosen instead. The type of this dataset is raster.

 2. For both Barcelona and Milan, shapefiles of their administrative boundaries have been downloaded from official sources, i.e. the ISTAT (Italian National Statistical Institute) and the ICGC (Catalan Institute for Cartography and Geology). These files have been reprojected to match the IMD HRL projection, i.e. ETRS 1989 LAEA.

 3. Urban Atlas (UA) boundaries for the Greater Cities (GRC) and Functional Urban Areas (FUA) of Barcelona and Milan have been checked and reconstructed in Esri ArcGIS from the administrative boundaries files by using a Eurostat correspondence table. This is because at the time of the dataset creation (April/May 2021), the 2018 Urban Atlas shapefiles for these two cities were not fully updated or validated on the Copernicus Urban Atlas website. Therefore, I had to re-create the GRC and FUA boundaries by using the Eurostat correspondence table as an alternative (but still official) data source. The use of the Eurostat correspondence table with the codes and names of municipalities was also useful to detect discrepancies, basically stemming from changes in municipality names and codes and that created inconsistent spatial features. When detected, these discrepancies have been checked with the ISTAT and ICGC offices in charge of producing Urban Atlas data before the final GRC and FUA boundaries were defined.

Steps 2) and 3) were the most time consuming, because they required other tools to be used in Esri ArcGIS, like spatial joins and geoprocessing tools for shapefiles (in particular dissolve and area re-calculator in editing sessions) for each of the spatial/territorial scales as indicated in letters a)-h).

Once the databases for both Barcelona and Milan as described in points 2) and 3) were ready (uploaded in Esri ArcGIS, reprojected and their correctness checked), they have been ‘crossed’ (i.e. clipped) with the IMD HRL as described in point 1) and a specific raster for each territorial level has been calculated. The procedure in Esri ArcGIS was the following:

 * Clipping: Arctoolbox > Data management tools > Raster > Raster Processing > Clip. The ‘input’ file is the HRL IMD raster file as described in point 1) and the ‘output’ file is each of the spatial/territorial files. The option "Use Input Features for Clipping Geometry (optional)” was selected for each of the clipping.
 * Delete and create raster attribute table: Once the clipping has been done, the raster has to be recalculated first through Arctoolbox > Data management tools > Raster > Raster properties > Delete Raster Attribute Table and then through Arctoolbox > Data management tools > Raster > Raster properties > Build Raster Attribute Table; the "overwrite" option has been selected.

 Other tools used for the raster files in Esri ArcGIS have been the spatial analyst tools (in particular, Zonal > Zonal Statistics). As an additional check, the colour scheme of each of the newly created raster for each of the spatial/territorial attributes as per letters a)-h) above has been changed to check the consistency of its overlay with the original HRL IMD file. However, a perfect match between the shapefiles as per letters a)-h) and the raster files could not be achieved since the raster files are composed of 20x20mt cells.

The newly created attribute tables of each of the raster files have been exported and saved as .txt files. These .txt files have then been copied in the excel corresponding to the final published dataset.

barcelona

display_name: barcelona

copernicus

display_name: copernicus

imperviousness

display_name: imperviousness

milan

display_name: milan

soil-sealing

display_name: soil-sealing

urban-atlas

display_name: urban-atlas

en: Soil sealing Barcelona and Milan different territorial levels


wind-lidar-davos-wolfgang

title_for_slug: wind-lidar-davos-wolfgang

en: profiles wolfgangpass raclets lidar wind

en: Wind LIDAR data Wolfgang

en: A Leosphere WidCube 100S was deployed at Davos Wolfang, measuring wind profiles as well as performing PPI and RHI scans. Time format is in UTC with highest time resolution of 5 seconds.

en: Scanning wind Lidar from Meteoswiss was installed at Davos Wolfgang (LON: 9.853594, LAT: 46.835577) and measured from 200 m above ground to 8100 m. The time resolution is up to 5 seconds. The Lidar was measuring wind profiles but also performed plan position indicator (PPI) and range height indicator (RHI) scans.

lidar

display_name: lidar

profiles

display_name: profiles

raclets

display_name: raclets

wind

display_name: wind

wolfgangpass

display_name: wolfgangpass

en: Wind LIDAR Davos Wolfgang


maintainer: Achille Capelli

en: liquid-water-content snow gps swe gnss lwc snow-water-equivalent

en: Profile data for Laret at 1510 m a.s.l. (46°50’2’’N, 9°52’17’’E) for the two winter 2018-2020.

en: Snow profiles data from Küblis at 820 m a.s.l. (46°54’48’’N, 9°46’54’’E) for the two winters 2018-2020.

en: GNSS derived data for Laret at 1510 m a.s.l. (46°50’2’’N, 9°52’17’’E) for the two winter 2018-2020.

en: Snow and meteo data from automatic sensors from Klosters (1210 m a.s.l. ,46°51’49’’N, 9°53’17’’E) for the two winters 2018-2020.

en: Snow and meteo data from automatic sensors for Laret at 1510 m a.s.l. (46°50’2’’N, 9°52’17’’E) for the two winter 2018-2020.

en: Daily observer data for the site Weissfluhjoch at 2540 m a.s.l (46°49’47’’ N, 9°48’34’’E) for the two winters 2018-2020.

en: Daily data for the site Weissfluhjoch at 2540 m a.s.l (46°49’47’’ N, 9°48’34’’E) for the two winters 2018-2020. These data were processed to daily values from the other data files.

en: Snow and meteo data from automatic sensors for the site Weissfluhjoch at 2540 m a.s.l (46°49’47’’ N, 9°48’34’’E) for the two winters 2018-2020.

en: Snow profiles data for the site Weissfluhjoch at 2540 m a.s.l (46°49’47’’ N, 9°48’34’’E) for the two winters 2018-2020.

en: Daily data from Küblis at 820 m a.s.l. (46°54’48’’N, 9°46’54’’E) for the two winters 2018-2020. These data were processed to daily values from the other data files.

en: Daily observer data from Küblis at 820 m a.s.l. (46°54’48’’N, 9°46’54’’E) for the two winters 2018-2020.

en: Manual profiles

en: Data of the traditional manual profiles for the locations Weissfluhjoch, Klosters and Küblis. For the location of Küblis there are no traditional manual profile data. We provided the data as both PDF and .CAAML format (See https://niviz.org/ or http://caaml.org/Schemas/V5.0/Profiles/SnowProfileIACS/CAAMLv5_SnowProfileIACS.pdf). Moreover, we added LWC and density profiles when available (all locations).

en: GNSS derived SWE, HS, and LWC for the site Weissfluhjoch at 2540 m a.s.l (46°49’47’’ N, 9°48’34’’E) for the two winters 2018-2020.

en: Snow and meteo data from automatic sensors from Küblis at 820 m a.s.l. (46°54’48’’N, 9°46’54’’E) for the two winters 2018-2020.

en: Daily observer data from automatic sensors from Klosters (1210 m a.s.l. ,46°51’49’’N, 9°53’17’’E) for the two winters 2018-2020.

en: Daily data from Klosters (1210 m a.s.l. ,46°51’49’’N, 9°53’17’’E) for the two winters 2018-2020. These data were processed to daily values from the other data files.

en: GNSS derived SWE, LWC and HS from Klosters (1210 m a.s.l. ,46°51’49’’N, 9°53’17’’E) for the two winters 2018-20

en: Snow profiles data from Klosters (1210 m a.s.l. ,46°51’49’’N, 9°53’17’’E) for the two winters 2018-2020.

en: Webcam images

en: Webcam images showing some typical differences in the snow conditions at the four sites (Küblis, Klosters, Laret and Weissfluhjoch) for two time periods (14-18.3.2019 and 27.1-11.2.2020). Both time periods included a precipitation event with partial rain-on–snow occurring at the lower locations.

en: Daily data for Laret at 1510 m a.s.l. (46°50’2’’N, 9°52’17’’E) for the two winters 2018-2020. These data were processed to daily values from the other data files.

en: GNSS derived SWE, LWC and HS from Küblis at 820 m a.s.l. (46°54’48’’N, 9°46’54’’E) for the two winters 2018-20

en: This database contains GNSS derived snow water equivalent (SWE), liquid water content (LWC), and snow height (HS) and reference data collected during the two winter 2018-2020 at 4 sites Weissfluhjoch (2540 m asl, 46°49’47’’ N, 9°48’34’’E), Laret (1515 m asl, . 46°50’2’’N, 9°52’17’’E), Klosters (1200 m asl, 46°51’49’’N, 9°53’17’’E), and Küblis (815 m asl, 46°54’48’’N, 9°46’54’’E).

gnss

display_name: gnss

gps

display_name: gps

liquid-water-content

display_name: liquid-water-content

lwc

display_name: lwc

snow-water-equivalent

display_name: snow-water-equivalent

en: Snow water equivalent measurements with low-cost GNSS receivers along a steep elevation gradient in the East-ern Swiss Alps


maintainer: Zhao

en: planning driving-factors land-dynamics urban-land-use austin

en: Potential driving factors of urban transformations of Austin over 25 years

en: In this study, the Austin metropolitan area, Texas, U.S., one of the fastest urban transformations and transformations regions, is selected to test the hypothesis that spatial planning and policies are important factors of urban transformations. Despite ample previous work in understanding the interactions between human and urban form transformation at specific areas, the actual interventions and outcomes of planning and policies (e.g., ‘smart growth’) on urban forms have been poorly measured. In this study, the potential influencing factors of urban transformations of Austin over 25 years were selected and collected.

austin

display_name: austin

driving-factors

display_name: driving-factors

land-dynamics

display_name: land-dynamics

planning

display_name: planning

urban-land-use

display_name: urban-land-use

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


maintainer: Varun Sharma

en: mesoscale-modelling blowing-snow snow-atmosphere-interaction alps antarctica

en: REPRODUCIBILITY_SIMULATION.zip contains all the extraneous files required to perform the simulations in associated manuscript (see Citations 3 in README.txt). The purpose of sharing these files apart from purposes of reproducibility is to also serve as templates for users to learn the workflow of CRYOWRF and perform simulations for their own purposes.

en:
REPRODUCIBILITY_POSTPROCESSING.zip contains data and scripts used to produce all figures from for the associated manuscript submitted for peer review ( see section on Citations below )

The folders stand for the three case studies presented in the manuscript. Two case studies (case Ia and case Ib) are on simulations in Antarctica and one case study
case II is for simulations in the Alps.

The associated data in the form of netcdf files or text files were produced using CRYOWRF v1.0

Apart from reproducibility, the intention of sharing these scripts is also to make it easy for new users to adopt CRYOWRF and be efficient, in particular in processing snowpack outputs.

The scripts were tested on multiple machines (different OSes) with the attached YAML file (wrf_analysis.yml) to setup the conda environment. All scripts were run using spyder as the IDE.

en:
This repository contains data required for reproducibility of the results to be published in the associated manuscript.

Apart from reproducibility, the attached datasets also serve as templates for new users to adopt CRYOWRF in their research.

The datasets consist of two folders organized in zip format:

1. REPRODUCIBILITY_SIMULATION:
  Consists of namelists for WPS, WRF and SNOWPACK to reproduce simulations published in the manuscript
  Additional files include datasets (from IMAU-FDM / RACMO, see "credits" below ) as well as helper python scripts to
  produce *.sno files
  which are used as initial conditions for SNOWPACK in CRYOWRF.

2. REPRODUCIBILITY_POSTPROCESSING:
   Includes outputs of CRYOWRF and python scripts used to prepare figures in the manuscript.

Each of the folders have their own readme files for more details.

 Code
citation: Varun Sharma. (2021, July 2). vsharma-next/CRYOWRF: CRYOWRF v1.0 (Version v1.0). Zenodo. http://doi.org/10.5281/zenodo.5060165

location: https://gitlabext.wsl.ch/atmospheric-models/CRYOWRF   (stable releases / institutional repo)
        https://github.com/vsharma-next/CRYOWRF            (dev branches / developer repo)

 Publication
**Introducing CRYOWRF v1.0: Multiscale atmospheric flow simulations with advanced snow cover modelling.**
Varun Sharma, Fraziska Gerber and Michael Lehning, Submitted to Geoscientific Model Development

 Acknowledgements
We thank Peter Kuipers Munneke (P.KuipersMunneke@uu.nl) for preparing and sharing outputs of IMAU-FDM and RACMO used for initial conditions for case Ia. The relevant citations for the methods through which these datasets were generated are:

* Kuipers Munneke, P., S. R. M. Ligtenberg, B. P. Y. Noël, I. M. Howat, J. E. Box, E. Mosley-Thompson, J. R. McConnell, K. Steffen, J. T. Harper, S. B. Das and M. R. van den Broeke. 2015. Elevation change of the Greenland ice sheet due to surface mass balance and firn processes, 1960-2014. The Cryosphere, 9, 2009-2025. doi:10.5194/tc-9-2009-2015

 * Ligtenberg, S. R. M., P. Kuipers Munneke, B. P. Y. Noël, and M. R. van den Broeke. 2018. Brief communication: Improved simulation of the present-day Greenland firn layer (1960-2016). The Cryosphere, 12, doi:10.5194/tc-12-1643-2018

alps

display_name: alps

antarctica

display_name: antarctica

blowing-snow

display_name: blowing-snow

mesoscale-modelling

display_name: mesoscale-modelling

snow-atmosphere-interaction

display_name: snow-atmosphere-interaction

en: Reproducibility Dataset for CRYOWRF v1.0


en: teleo dna-metabarcoding edna bay-biscay atlantic-region actinopterygii chondrichthyes fish-composition

en: Data access

en:
Environmental DNA complements scientific trawling in surveys of marine fish biodiversity (Dataset 2020)

In October 2020 we chose 16 sites from the 2020 EVHOE survey for eDNA sampling. The French international EVHOE bottom trawl survey is carried out annually during autumn in the BoB to monitor demersal fish resources. All sites were located on the continental shelf (26–170 m depth), except one on the upper slope with a depth of 1045 m. To perform eDNA sampling, we collected water samples at 15 sites (Figure 1a). At each site, we sampled seawater using Niskin bottles deployed with a circular rosette. There were nine bottles on the rosette, each of them able to hold ∼5 l of water. At each site, we first cleaned the circular rosette and bottles with freshwater, then lowered the rosette (with bottles open) to 5 m above the sea bottom, and finally closed the bottles remotely from the boat. The 45 l of sampled water was transferred to four disposable and sterilized plastic bags of 11.25 l each to perform the filtration on-board in a laboratory dedicated to the processing of eDNA samples. To speed up the filtration process, we used two identical filtration devices, each composed of an Athena® peristaltic pump (Proactive Environmental Products LLC, Bradenton, Florida, USA; nominal flow of 1.0 l min–1 ), a VigiDNA 0.20 μm filtration capsule (SPYGEN, le Bourget du Lac, France), and disposable sterile tubing. Each filtration device filtered the water contained in two plastic bags (22.5 l), which represent two replicates per sampling site. We followed a rigorous protocol to avoid contamination during fieldwork, using disposable gloves and single-use filtration equipment and plastic bags to process each water sample. At the end of each filtration, we emptied the water inside the capsule that we replaced by 80 ml of CL1 conservation buffer and stored the samples at room temperature following the specifications of the manufacturer (SPYGEN, Le Bourget du Lac, France). We processed the eDNA capsules at SPYGEN, following the protocol proposed by Polanco-Fernández et al., (2020). We performed library preparation and sequencing at Fasteris (Geneva, Switzerland). Specifically, we prepared four libraries using the MetaFast protocol (a ligation-based method) and sequenced them separately. We carried out paired-end sequencing using a MiSeq sequencer (2 × 125 bp, Illumina, San Diego, CA, USA) on two MiSeq Flow Cell Kits (v3; Illumina), following the manufacturer’s instructions. We analysed the sequence reads using the OBITools package (http:
//metabarcoding.org/obitools; Boyer et al., 2016), following the protocol described by Valentini et al. (2016).

Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

actinopterygii

display_name: actinopterygii

atlantic-region

display_name: atlantic-region

bay-biscay

display_name: bay-biscay

chondrichthyes

display_name: chondrichthyes

dna-metabarcoding

display_name: dna-metabarcoding

edna

display_name: edna

fish-composition

display_name: fish-composition

teleo

display_name: teleo

en: Environmental DNA Marine France Evhoe 2020


en: decomposition bacteria soil-biodiversity wolf detritus biogeochemical-cycling carrion yellowstone fungi carcass

en:
Site	ID for different carcasses across the Yellowstone Landscape
Location	Sampling location, either under carcass or control plot
Species	Indicating whether carcass was from bison or elk
Gender	Gener of carcass; F = female, M = male, ? = unknown
Lat	Latitude
Long	Longitude
DSK	Days since kill; in days
Soil.N	Soil N concentration (%)
Soil.C	Soil C concentration (%)
Veg.C	Vegetation C concentration (%); dominant grasses sampled
Veg.N	Vegetation N concentration (%); dominant grasses sampled
Veg.CtoN	Vegetation C to N ratio; dominant grasses sampled
Soil.resp	Soil respiration (g m-2 h-1)
soil.temp	Soil temperature (°C)
Soil.moist	Soil moisture (volumentric; %)
CRR	Cotton rotting rate
bacteria.richness	Bacteria richness
bacteria.diversity	Bacteria diverstiy
fungi.richness	Fungi richness
fungi.diversity	Fungi diversity
bacteria.abundance	Bacteria abundance
fungi.abundance	Fungi abundance

format: XLS

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch, A.C., Frossard, A., Schütz, M., Frey, B., Morris, A.W., Bump, J.K. (accepted) Effects of elk and bison carcasses on soil microbial communities and ecosystem functions in Yellowstone, USA. (accepted). Functional Ecology
doi: ...

Methods
Study area and study sites
This study was conducted in YNP’s Northern Range (NR), located in north-western Wyoming and south-western Montana, USA (~44.9163° N, 110.4169° W). The NR expands over ~1000 km2 and features long cold winters and short dry summers. Grasslands and shrublands dominate the NR that is the home of large migratory herds of bison (winter counts 2017: ~3919 individuals; Geremia, Wallen, & White, 2017) and elk (~5349 individuals) as well as their main predators, approximately five packs of wolves with a total of 33 individuals (Smith et al., 2017). As part of a long-term research program within YNP, wolf predation has been studied since their reintroduction in 1995.
For our study, we received ground-truthed coordinates of bison and elk carcasses from winter 2016/17 (November 2016 through April 2017) from the YNP Wolf Project. Between June 20 and July 1, 2017, we visited 24 carcasses in total. At five sites, we could not sample as the carcasses were no longer found. In total we located remains (hairmats, rumen content, bones, teeth) of 19 adult male and female carcasses (7 bison, 12 elk; Supplementary Table 1). Live body weights of adult bison and elk are approximately 730 kg (male bison), 450 kg (female bison), 330 kg (male elk), and 235 kg (female elk, Meagher, 1973; Quimby & Johnson, 1951).
The kills and subsequent consumption happened between 34 and 173 days prior to our sampling (hereafter “days since kill”, DSK), for which we accounted in our statistics. Note that wolves and other scavengers consumed the soft tissue of the carcasses quickly, hence, there is close to no soft tissue left for decomposition as compared to an intact body left on the soil surface. The 19 carcass sites covered the extent of YNP’s NR, with both bison and elk carcasses showing similar distributions; elevation ranged from 1703 to 2884 m a.s.l. (Supplementary Fig 1 & Supplementary Table 1). The carcasses were all located in grassland or sage-brush shrubland, with or without sparsely scattered trees, and both bison and elk carcasses showed the same distribution of DSK. At each study site, we selected a reference plot (hereafter “control”) that was of comparable size, slope aspect and vegetation to the carcass location (hereafter “carcass”). The control was at least 10 m away (Danell, Berteaux, & Brathen, 2002; Melis et al., 2007) from the carcass itself to ensure the absence of potential direct and indirect carcass effects (paired design; (Bump, Webster, et al., 2009; Bump, Peterson, et al., 2009).

Ecosystem functions and soil properties
We randomly collected 50 g of mineral soil from three locations on both control and carcass plots to a depth of 5 cm with sterile techniques and gently mixed the material to obtain a composite sample. Half the soil sample was immediately bagged in plastic bags (whirl packs), stored in a cooler with ice packs (~5 ºC), sieved (2-mm) and frozen within 4-6 hours of collection to assess soil microbial communities. For this purpose, we extracted total genomic DNA from 0.5 g soil using the PowerSoil DNA Isolation Kit (Qiagen, Hilden, Germany). DNA concentrations were measured using PicoGreen (Molecular Probes, Eugene, OR, USA). PCR amplifications of partial bacterial small-subunit ribosomal RNA genes (region V3–V4 of 16S rRNA) and fungal ribosomal internal transcribed spacers (region ITS2) were performed as described previously (Frey et al., 2016). Each sample consisting of 40 ng DNA was amplified in triplicate and pooled before purification with Agencourt AMPure XP beads (Beckman Colter, Berea, CA, USA) and quantified with the Qubit 2.0 fluorometric system (Life Technologies, Paisley, UK). Amplicons were sent to the Genome Quebec Innovation Center (Montreal, Canada) for barcoding using the Fluidigm Access Array technology and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, CA, USA).
Quality control of bacterial and fungal reads was performed using a customized pipeline (Supplementary Table 2; Frey et al., 2016). Paired-ends reads were matched with USEARCH (Edgar & Flyvbjerg, 2015), substitution errors were corrected using Bayeshammer (Nikolenko, Korobeynikov, & Alekseyev, 2013) and PCR primers were trimmed (allowing for 1 mismatch, read length >300 bp for 16S and >200 bp for ITS primers) using Cutadapt (M. Martin, 2011). Sequences were dereplicated and singleton reads removed prior to clustering into operational taxonomic units (OTUs) at 97% identity using USEARCH (Edgar, 2013). The remaining centroid sequences were tested for the presence of ribosomal signatures using Metaxa2 (Bengtsson-Palme et al., 2015) or ITSx (Bengtsson-Palme et al., 2013). Taxonomic assignments of the OTUs were obtained using Bayesian classifier (Wang, Garrity, Tiedje, & Cole, 2007) with a minimum bootstrap support of 60% implemented in mothur (Schloss et al., 2009) by querying the bacterial and fungal reads against the SILVA Release 128 (Quast et al., 2013) and UNITE 8.0 (Abarenkov et al., 2010) reference databases for 16S and ITS OTUs, respectively.
Abundances of the bacterial 16S rRNA gene and fungal ITS amplicon were determined by quantitative real-time PCR (qPCR) on an ABI7500 Fast Real-Time PCR system (Applied Biosystems, Foster City, CA, USA) as described previously (Frossard et al., 2018). The same primers (without barcodes) and cycling conditions as for the sequencing approach were used for the 16S and ITS qPCR. Three standard curves per target region were obtained using tenfold serial dilutions of plasmids generated from cloned targets (Frey, Niklaus, Kremer, Lüscher, & Zimmermann, 2011). Data were converted to represent mean copy number of targets per gram of soil (dry weight).
The other half of the soil sample was bagged in paper, dried to constant weight at 60°C, passed through a 2 mm sieve and analyzed for total C and N concentration with a CE Instruments NC 2100 soil analyzer (CE Elantech Inc., Lakewood NJ, USA). We also collected 20 mature and undamaged leaves of the dominant grass species growing on control and carcass sites, but taxa were not recorded. The plant material was dried at 60°C, finely ground till homogenized and also analyzed to obtain total C and N concentrations. Soil temperature (10 cm depth) was measured with a waterproof digital thermometer (Barnstead International, Dubuque IA, USA) at three locations each at the control and carcass site. Soil moisture (0 – 10 cm depth) was measured with time domain reflectometry (Field-Scout TDR-100; Spectrum Technologies, Plainfield IL, USA) at five randomly chosen points on control and carcass sites. We measured soil respiration at five randomly chosen points at both control and carcass sites with a PP-Systems SRC-1 soil respiration chamber (closed circuit) attached to a PP-Systems EGM-4 infrared gas analyzer (PP-Systems, Amesbury, MA, USA). For each measurement the soil chamber (15 cm high; 10 cm diameter) was tightly placed on the soil surface, after clipping plants to avoid measuring plant respiration or photosynthesis. Measurements were conducted over 120 s.
In addition, we assessed the decomposition rates of standardized OM using the cotton strip assay (Latter & Howson, 1977; Latter & Walton, 1988). Cotton cloth tensile strength loss (CTSL) is a measure of decomposition, and an index to express the combined effect of soil microclimatic, physical, chemical and biological properties on decomposition while accounting for OM quality (Latter & Walton, 1988; Risch, Jurgensen, & Frank, 2007; Withington & Sanford Jr., 2007). We placed five 20 cm wide x 13 cm long sheets of 100% unbleached cotton cloth (American Type SM 1/18’’, Warp: 34/1, Weft: 20/1, Weave plain, 29.5 picks/cm warp, 22 picks/cm weft, 237 g/m2; Daniel Jenny & Co., Switzerland;) at each carcass and control site vertically into the soil by making slits with a flat spade to a depth of 12 cm. We inserted each cloth with the spade, and then pushed the slit closed to assure tight contact with the soil. The cloths were retrieved after 18 to 27 days. After retrieval, the cloths were air-dried, remaining soil gently removed by hand, and 1.5 cm wide strips were cut at the 3.5-5.0 cm (top) and the 9-10.5 cm (bottom) soil depth. The strips were equilibrated at 50 % relative humidity and 20°C for 48 hours (climate chamber) prior to strength testing (Scanpro Awetron TH-1 tensile strength tester; AB Lorentzen and Wettre, Kista, Sweden). Cotton rotting rate (CRR) = (CTScontrol - CTSfinal/CTSfinal)1/3 * (365/t), where CTScontrol is the cotton tensile strength of a control cloth and CTSfinal the cotton tensile strength of the incubated sample, t is the incubation period in days. Control cloths were inserted into the ground and immediately retrieved to account for tensile strength loss associated with cloth insertion. We averaged the CRR of top and bottom strips for further analyses as no difference was found between the two. All sampling and cloth insertion took place between June 20 and July 1, 2017, cloths were retrieved between July 17 and 20, 2017. Soil respiration, average CRR, vegetation N concentration and vegetation C:N ratio are defined as ecosystem functions, soil C and N concentration, soil temperature and moisture as soil abiotic properties, and bacterial and fungal richness (number of taxa), diversity (Shannon) and abundance as soil biotic properties.

Statistical analyses
Univariate analyses for ecosystem functions, soil biotic and abiotic properties
We tested whether individual ecosystem functions, soil biotic and abiotic properties differed between carcass and control (“Location”), bison and elk (“Species”) and days since kill (“DSK”). For this purpose, we used linear mixed effect models (LMM, “nlme” package v 3.1 – 131.1 in R v 3.4.4; Pinheiro, Bates, DebRoy, & Sarkar, 2018; R Core Team, 2019) with Location, Species, Location x Species and DSK as fixed effects. Site was included as random effect to account for the paired design. We developed a separate model for all dependent variables. All but bacterial richness, fungal richness, fungal diversity and vegetation N concentration were natural-log transformed to meet model assumptions. For each LMM, we calculated contrasts to assess the specific comparisons we were interested in with the “lsmeans” package v 2.27-62 (Lenth & Love, 2018): 1) carcass vs control, 2) carcass bison vs control bison, and 3) carcass elk vs control elk. We also tested whether we had differences between bison and elk carcasses or the sites where bison and elk were killed and included contrasts 4) carcass bison vs carcass elk and 5) control bison vs control elk.
We calculated the log response ratio (LRR = ln[carcass/control]) to obtain carcass effects for all variables for both species separately. LRR < 0 indicates higher value at control compared to carcass, LRR > 0 indicates higher values at carcass compared control. We used LRRs for visualization and to assess spatial patterns in carcass effects across YNP. For this purpose we calculated the Moran’s I statistic for each ecosystem function, soil biotic and abiotic property based on a latitude-longitude matrix with the “moran.test” function in the “spdep” package version 1.1-3 (Bivand et al., 2019).
Multivariate analyses
Rare OTUs, defined as OTUs with a low abundance of reads, were retained in multivariate methods because they only marginally influence these analyses (Gobet, Quince, & Ramette, 2010). Bray–Curtis dissimilarity matrices were generated based on square-root-transformed matrices. We used Principal Coordinate Analyses (PCoA) to assess how soil bacterial and fungal communities differed between control and carcass of bison and elk (“vegan” package v 2.5-4, Oksanen et al., 2019). We then extracted PCoA axes scores 1 and 2 and used LMM (“nlme” package) with Location, Species, Location x Species and DSK as fixed effects. Site was, again, included as random effect. We again calculated the contrasts as described above using the “lsmeans” package. We also assessed how ecosystem functions, and soil abiotic and biotic properties were related to the soil bacteria and fungi community structure associated with bison and elk control and carcasses using the “envfit” function in the “vegan” package (Oksanen et al., 2019).
Indicator species analyses were performed using the multipatt function implemented in the “indicspecies” package version 1.7.6 with 100000 permutations (De Caceres & Jansen, 2016). This step allowed to identify OTUs that led to changes in multivariate patterns between control and carcass of both bison and elk separately (De Cáceres, Legendre, & Moretti, 2010). The multipatt function uses a point biserial correlation coefficient statistical test. Indicator OTUs were defined as bacterial and fungal OTUs with more than 50 sequences, i.e., removing rare taxa and taxa with low abundances containing little indicator information (Rime et al., 2015) and that were significantly correlated with Location (p < 0.05, correlation coefficient > 0.3). A heatmap of these OTUs were generated with the vegan and ggplot2 packages. The indicator analyses were performed in R version 3.3.3 (R Core Team, 2017).

References
Abarenkov, K., Henrik Nilsson, R., Larsson, K.-H., Alexander, I. J., Eberhardt, U., Erland, S., … Kõljalg, U. (2010). The UNITE database for molecular identification of fungi – recent updates and future perspectives. New Phytologist, 186(2), 281–285. doi:10.1111/j.1469-8137.2009.03160.x
Bengtsson-Palme, J., Hartmann, M., Eriksson, K. M., Pal, C., Thorell, K., Larsson, D. G. J., & Nilsson, R. H. (2015). metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data. Molecular Ecology Resources, 15(6), 1403–1414. doi:10.1111/1755-0998.12399
Bengtsson-Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., … Nilsson, R. H. (2013). Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in Ecology and Evolution, 4(10), 914–919. doi:10.1111/2041-210X.12073
Bivand, R., Altman, M., Anselin, L., Assuncao, R., Berke, O., Blanchet, G., … Yu, D. (2019). spdep: Spatial dependence, weighthing schemes, statistics. R package version 1.1-3.
Bump, J. K., Peterson, R. O., & Vucetich, J. A. (2009). Wolves modulate soil nutrient heterogeneity and foliar nitrogen by configuring the distribution of ungulate carcasses. Ecology, 90(11), 3159–3167.
Bump, J. K., Webster, C. R., Vucetich, J. A., Peterson, R. O., Shields, J. M., & Powers, M. D. (2009). Ungulate carcasses perforate ecological filters and create biogeochemical hotspots in forest herbaceous layers allowing trees a competitive advantage. Ecosystems, 12(6), 996–1007. doi:10.1007/s10021-009-9274-0
Danell, K., Berteaux, D., & Brathen, K. A. (2002). Effect of muskox carcasses on nitrogen concentration in tundra vegetation. Arctic, 55(4), 389392.
De Caceres, M., & Jansen, F. (2016). indicspecies: relationship between species and groups of species. R package version 1.7.6.
De Cáceres, M., Legendre, P., & Moretti, M. (2010). Improving indicator species analysis by combining groups of sites. Oikos, 119(10), 1674–1684. doi:10.1111/j.1600-0706.2010.18334.x
Edgar, R. C. (2013). UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10, 996.
Edgar, R. C., & Flyvbjerg, H. (2015). Error filtering, pair assembly and error correction for next-generation sequencing reads. Bioinformatics, 31(21), 3476–3482. doi:10.1093/bioinformatics/btv401
Frey, B., Niklaus, P. A., Kremer, J., Lüscher, P., & Zimmermann, S. (2011). Heavy-machinery traffic impacts methane emissions as well as methanogen abundance and community structure in oxic forest soils. Applied and Environmental Microbiology, 77(17), 6060–6068. doi:10.1128/AEM.05206-11
Frey, B., Rime, T., Phillips, M., Stierli, B., Hajdas, I., Widmer, F., & Hartmann, M. (2016). Microbial diversity in European alpine permafrost and active layers. FEMS Microbial Ecology, 92(3), fiw018.
Frossard, A., Donhauser, J., Mestrot, A., Gygax, S., Bååth, E., & Frey, B. (2018). Long- and short-term effects of mercury pollution on the soil microbiome. Soil Biology and Biochemistry, 120, 191–199. doi:https://doi.org/10.1016/j.soilbio.2018.01.028
Geremia, C., Wallen, R., & White, P. J. (2017). Status report of the Yellowstone bison population, September 2017. Yellowstone National Park, Mammoth, WY, USA: National Park Service, Yellowstone Center for Resources.
Gobet, A., Quince, C., & Ramette, A. (2010). Multivariate cutoff level analysis (MultiCoLA) of large community data sets. Nucleic Acids Research, 38(15), e155–e155. doi:10.1093/nar/gkq545
Latter, P., & Howson, G. (1977). The use of cotton strips to indicate cellulose decomposition in the field. Pedobiologia, (17), 145–155.
Latter, P., & Walton, D. (1988). The cotton strip assay for cellulose decomposition studies in soil: history of the assay and development. In Cotton strip assay: an index for decomposition in soils (pp. 7–9). ITE Symposium, Institute of Terrestrial Ecology, Natural Environment Research Council, UK.
Lenth, R., & Love, J. (2018). lsmeans: least-squares means. R package version 2.27-62.
Martin, M. (2011). Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.Journal, 17(1), 10–12.
Meagher, M. M. (1973). The bison of Yellowstone National Park. NPS Scientific Monograph (Vol. 1). National Park Service, Yellowstone Center for Resources.
Melis, C., Selva, N., Teurlings, I., Skarpe, C., Linnell, J. D. C., & Andersen, R. (2007). Soil and vegetation nutrient response to bison carcasses in Białowieża Primeval Forest, Poland. Ecological Research, 22(5), 807–813. doi:10.1007/s11284-006-0321-4
Nikolenko, S. I., Korobeynikov, A. I., & Alekseyev, M. A. (2013). BayesHammer: Bayesian clustering for error correction in single-cell sequencing. BMC Genomics, 14(1), S7. doi:10.1186/1471-2164-14-S1-S7
Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., … Wagner, H. H. (2019). vegan: community ecology package. R package version 2.5-4.
Pinheiro, J., Bates, D., DebRoy, S., & Sarkar, D. (2018). nlme: Linear and nonlinear mixed effect models. R package version 3.1-131.1.
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., … Glöckner, F. O. (2013). The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research, 41(Database issue), D590–D596. doi:10.1093/nar/gks1219
Quimby, D. C., & Johnson, D. E. (1951). Weights and measurements of Rocky Mountain elk. Journal of Wildlife Management, 15, 57–62.
R Core Team. (2017). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Zurich, Switzerland.
R Core Team. (2019). R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
Rime, T., Hartmann, M., Brunner, I., Widmer, F., Zeyer, J., & Frey, B. (2015). Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield. Molecular Ecology, 24(5), 1091–1108. doi:10.1111/mec.13051
Risch, A. C., Jurgensen, M. F., & Frank, D. A. (2007). Effects of grazing and soil micro-climate on decomposition rates in a spatio-temporally heterogeneous grassland. Plant and Soil, 298(1–2), 191–201. doi:10.1007/s11104-007-9354-x
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., … Weber, C. F. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology, 75(23), 7537–7541. doi:10.1128/AEM.01541-09
Smith, D., Stahler, D., Cassidy, K., Stahler, E., Metz, M., Cassidy, B., … Cato, E. (2018). Yellowstone National Park wolf project annual report 2017. Yellowstone National Park, Mammoth, WY, USA: National Park Service, Yellowstone Center of Resources.
Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73(16), 5261–5267. doi:10.1128/AEM.00062-07
Withington, C., & Sanford Jr., R. (2007). Decomposition rates of buried substances increase with altitude in a forest-alpine tundra ecotone. Soil Biology and Biochemistry, (39), 68–75.

Please cite this paper together with the citation for the datafile.

bacteria

display_name: bacteria

biogeochemical-cycling

display_name: biogeochemical-cycling

carcass

display_name: carcass

carrion

display_name: carrion

decomposition

display_name: decomposition

detritus

display_name: detritus

fungi

display_name: fungi

soil-biodiversity

display_name: soil-biodiversity

wolf

display_name: wolf

yellowstone

display_name: yellowstone

en: Elk and bison carcasses in Yellowstone, USA


maintainer: Frank Techel

en: machine-learning avalanche-size avalanche natural-avalanches snowpack-model

en: Data set AV2 used for training the avalanche-size estimator (Sections 2.1.2 and 3.2 in Mayer et al.)

en: Data set AV3 was used for validation of the avalanche-day classifier (Sections 2.1.3 and 3.3(1) in Mayer et al.).

en: Data set AV1 was used for training the avalanche-day classifier (Sections 2.1.1, 2.2, and 3.1 in Mayer et al.).

en: Data set DL was used for validation of the avalanche-day classifier and the avalanche-size estimator. The data set contains the quality-checked danger levels merged with the respective SNOWPACK simulations (Sections 2.3 and 3.3(2) in Mayer et al.).

en:
The data set contained in this repository was used in the analysis by Mayer et al. (2023):
Mayer, S. I., Techel, F., Schweizer, J., and van Herwijnen, A.: Prediction of natural dry-snow avalanche activity using physics-based snowpack simulations, EGUsphere, https://doi.org/10.5194/egusphere-2023-646, 2023.

avalanche

display_name: avalanche

avalanche-size

display_name: avalanche-size

machine-learning

display_name: machine-learning

natural-avalanches

display_name: natural-avalanches

snowpack-model

display_name: snowpack-model

en: Data-set for prediction of natural dry-snow avalanche activity and avalanche size using physics-based snowpack simulations


en: southern-switzerland dryocosmus-kuriphilus torymus-sinensis biological-control castanea-sativa population-evolution pest-invasion

en:
Data has been collected from summer 2011 to 2016.

Main reasons for NA values:

-	D. kuriphilus still not arrived in the site.
-	No galls were found during the field sampling.
-	Site has not been sampled in the correspondent year because of time, weather or money constrains.
-    T. sinensis not found in the galls

Variable description:

Year = sampling year.

Coordinate, elevation, slope, aspect = average site characteristics.

ts_arrival = T. sinensis arrival year.

dk_arrival = D. kuriphilus arrival year.

dk_parasitism_by_ts = D. kuriphilus parasitism rate by T. sinensis. Formula: (no. of T. sinensis/ no. of D. kuriphilus chambers) * 100 at gall level.

dk_infestation = Percentage of attacked buds. Formula: no. of attacked buds / no. of total developed buds*100 (as presented in Kotobuki et al. 1985) at shoot level.

ts_per_bud = number of alive T. sinensis individual calculated at bud level.

dk_per_bud = number of alive D. kuriphilus individual calculated at bud level.

dk_pot_per_bud = overall number (dead and alive) D. kuriphilus individual calculated at bud level.

total_gall_nr_per_bud = average gall number per bud.

chamber_per_galls = average D. kuriphilus chamber number per gall.

For details see the submitted publication with the same name

References
Kotobuki, K., Mori, K. and Sato, Y. (1985) ‘2 methods to estimate the tree damage by chestnut gall wasp Dryocosmus-kuriphilus’, Bulletin of the fruit tree research station A (Yatabe), 2(12), pp. 29–36.

en:
This dataset contains the population evolution of a pest and its biocontrol agent in terms of presence proportion at gall level and absolute number of insects.

The study area extends from the Cuneo region (Piedmont, Italy) to southern Switzerland. In order to provide a complete range of data covering the entire process from the pest arrival to complete biological control by its natural enemy T. sinensis, a space-for-time substitution approach has been adopted so as to create a temporal gradient of the epidemic stages over the whole study area.

The southernmost Swiss sites roughly represent the arrival and establishment of the pest without the presence of the natural enemy, the central ones the early epidemic stage and the epidemic peak, whereas the northern ones the end of the epidemic with the beginning of the biocontrol. The Italian ones represent the beginning of the equilibrium between the two population as well as the situation with stable T. sinensis populations on the long term.

These data are used in the paper entitled: Torymus sinensis local and regional early population dynamics in the Insubrian and Piedmont regions

biological-control

display_name: biological-control

castanea-sativa

display_name: castanea-sativa

dryocosmus-kuriphilus

display_name: dryocosmus-kuriphilus

pest-invasion

display_name: pest-invasion

population-evolution

display_name: population-evolution

southern-switzerland

display_name: southern-switzerland

torymus-sinensis

display_name: torymus-sinensis

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: lichen elevational-gradient climate-change functional-taxonomic-group disturbance lichen-growthform bryophyte biodiversity endemic endemic-species functional-taxonomic-groups moss lichen-growth-form climate-change-impact madeira-island liverwort photobiont bryophyte-life-strategy

en: MadCrypto – Bryophyte and macrolichen diversity in laurel forests of Madeira

en:
This dataset includes species lists of bryophytes and macrolichens (presence/absence) sampled on the forest floor and on trees in disturbed and undisturbed plots along elevation gradients in the laurel forests of Madeira island. It also contains species specific information (bryophytes: red list status, endemic status, taxonomic group, life strategy; macrolichens: photobiont type, growth form) as well as plot information (Plot_ID, sampling date, coordinates, elevation a.s.l. (m), disturbance type, sampled host tree species).

The dataset was used for the paper
Boch S, Martins A, Ruas S, Fontinha S, Carvalho P, Reis F, Bergamini A, Sim-Sim M (2019) Bryophyte and macrolichen diversity show contrasting elevation relationships and are negatively affected by disturbances in laurel forests of Madeira island. Journal of Vegetation Science.

en:
This dataset includes species lists of bryophytes and macrolichens (presence/absence) sampled on the forest floor and on trees in disturbed and undisturbed plots along elevation gradients in the laurel forests of Madeira island. It also contains species specific information (bryophytes: red list status, endemic status, taxonomic group, life strategy; macrolichens: photobiont type, growth form) as well as plot information (Plot_ID, sampling date, coordinates, elevation a.s.l. (m), disturbance type, sampled host tree species).

The dataset was used for the paper
Boch S, Martins A, Ruas S, Fontinha S, Carvalho P, Reis F, Bergamini A, Sim-Sim M (2019) Bryophyte and macrolichen diversity show contrasting elevation relationships and are negatively affected by disturbances in laurel forests of Madeira island. Journal of Vegetation Science 30: 1122–1133.

The excel file contains 5 sheets:
1) Plot information
2) Bryophyte data with species specific information, separated per substrate
3) Macrolichen data with species specific information, separated per substrate
4) Bryophyte data with species specific information (plot level data). Species lists of the two substrates were merged; if one substrate in a plot hosted a species identified only to genus level (genus spec.) but the second investigated substrate hosted an identified species of the same genus, we removed the genus spec. entry in the particular plot. The species list of sheet 2 and 4 might therefore differ slightly.
5) Macrolichen data with species specific information (plot level data). Species lists of the two substrates were merged; if one substrate in a plot hosted a species identified only to genus level (genus spec.) but the second investigated substrate hosted an identified species of the same genus, we removed the genus spec. entry in the particular plot. The species list of sheet 3 and 5 might therefore differ slightly.

biodiversity

display_name: biodiversity

bryophyte

display_name: bryophyte

bryophyte-life-strategy

display_name: bryophyte-life-strategy

climate-change

display_name: climate-change

climate-change-impact

display_name: climate-change-impact

disturbance

display_name: disturbance

elevational-gradient

display_name: elevational-gradient

endemic

display_name: endemic

endemic-species

display_name: endemic-species

functional-taxonomic-group

display_name: functional-taxonomic-group

functional-taxonomic-groups

display_name: functional-taxonomic-groups

lichen

display_name: lichen

lichen-growth-form

display_name: lichen-growth-form

lichen-growthform

display_name: lichen-growthform

liverwort

display_name: liverwort

madeira-island

display_name: madeira-island

moss

display_name: moss

photobiont

display_name: photobiont


maintainer: Henning Löwe

en: granular-snow grain-shape fast-sintering discrete-element-modelling angle-of-repose

en: Angle of repose and 3D CT images

en:
5 Snow types were examined and glass beads as a cohesion-less reference, named as follows:

RG: rounded grains (sieved with 0.7 - 1.4 mm)

FC: faceted grains (1.4 - 2 mm)

FCS: small faceted grains (0.7 - 1.4 mm)

IB: ice beads (4 mm)

IBS: small ice beads (2 - 2.2 mm)

GB: glass beads(2 mm)

en:
Angle of repose experiments were performed with different snow types at temperatures between -2 and -40°C. They were used to examine granular snow dynamics on the grain-scale with focus on the role of grain shape and cohesion. The angle of repose was observed by sieving snow onto a round, freestanding base until a stationary heap was formed.

This dataset consists of 1) the images of the experimental heaps that were taken to determine the angle of repose, 2) one binary 3D micro computed tomography image of each snow type. The CT images were taken with the SLF micro-CT40 to characterize snow properties and grain shape.

The experiments with natural snow types (rounded and faceted grains) and spherical model snow allowed for an examination of the differences in granular properties between natural grain shapes and spherical particles in view of Discrete Element Modelling. With the chosen temperatures, the effect of sintering could be observed that increases the angle of repose with increasing temperature.

angle-of-repose

display_name: angle-of-repose

discrete-element-modelling

display_name: discrete-element-modelling

fast-sintering

display_name: fast-sintering

grain-shape

display_name: grain-shape

granular-snow

display_name: granular-snow

en: Angle of repose experiments with natural and spherical snow


maintainer: Frank Hagedorn

en: beech fertilization soil-temperature dissolved-organic-phosphorus seasons forest-topsoil nitrogen phosphorus nutrient-fluxes zero-tension-lysimeters

en:
Data on dissolved organic and inorganic phosphorus and nitrogen concentrations in leachates and their corresponding
fluxes from the litter layer, the Oe/Oa horizon, and the A horizon of two German beech forest sites.
Leachate samples were taken in April 2018, July 2018, October 2018, Feb./Mar. 2019, and July 2019
with zero-tension lysimeters after artificial irrigation. Soil samples were taken in July 2019.
For more details please refer to the publication.

beech

display_name: beech

dissolved-organic-phosphorus

display_name: dissolved-organic-phosphorus

fertilization

display_name: fertilization

forest-topsoil

display_name: forest-topsoil

nitrogen

display_name: nitrogen

nutrient-fluxes

display_name: nutrient-fluxes

phosphorus

display_name: phosphorus

seasons

display_name: seasons

soil-temperature

display_name: soil-temperature

zero-tension-lysimeters

display_name: zero-tension-lysimeters

en: Phosphorus and nitrogen leaching from beech forest soils


bryophytes-of-europe-traits-bet-dataset

title_for_slug: bryophytes-of-europe-traits-bet-dataset

en: liverworts indicator-values bioclimatic-variables red-list hornworts iucn mosses life-history-traits

en: PDF including the (trait) explanations.

en: Excel file including the BET dataset and (trait) explanations.

en: Text file including the BET dataset.

en: The Bryophytes of Europe Traits (BET) dataset includes values for 65 biological and ecological traits and 25 bioclimatic variables for all 1816 bryophytes included in the European Red List (Hodgetts et al. 2019). The traits are compiled from several regional trait datasets and manually complemented using Floras, species-specific literature and expert knowledge. The bioclimatic variables are calculated using the European range of each species. Details regarding the trait compilation and extraction of bioclimatic variables can be found in the corresponding data paper (Van Zuijlen et al. 2023).

bioclimatic-variables

display_name: bioclimatic-variables

hornworts

display_name: hornworts

indicator-values

display_name: indicator-values

iucn

display_name: iucn

life-history-traits

display_name: life-history-traits

liverworts

display_name: liverworts

mosses

display_name: mosses

red-list

display_name: red-list


en: studibach switzerland groundwater time-series alptal

en:
Groundwater time series of the monitoring network in the Studibach (C7) catchment, Alptal, Switzerland published in
Rinderer M., van Meerveld I, McGlynn B. (2019): From points to patterns – Assessing runoff source area dynamics and hydrological connectivity using time series clustering. Water Resources Research, doi: 2018WR023886R

en: Groundwater time series between 2010 and 2014 of the distributed monitoring system in the Studibach (C7), Alptal, Switzerland. Data published in Rinderer M., van Meerveld I, McGlynn B. (2019): From points to patterns – Assessing runoff source area dynamics and hydrological connectivity using time series clustering. Water Resources Research, doi: 2018WR023886R

alptal

display_name: alptal

groundwater

display_name: groundwater

studibach

display_name: studibach

switzerland

display_name: switzerland

time-series

display_name: time-series

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Groundwater time series Studibach (Rinderer et al., 2019, WRR)


en: population-genetics nuclear-microsatellite-markers switzerland drosophila-suzukii trichopria-drosophilae multilocus-genotypes biological-control simple-sequence-repeats

en: Multilocus genotypes (biallelic coding for 21 nuclear microsatellites) of Trichopria drosophilae described in Gugerli et al. Agrarforschung Schweiz 2019. Missing data denoted as '999'. Population codes (PopNo) are the following: 1, Vezia; 3, Contone ; 5, Davesco; 6, Corteglia; 7, Mezzana; 8, Stabio; 9, Gordola; 10, Sementina; 12, Brusata di Novazzano; 14, Monteggio; 16, Giubiasco; 17, ComoBP; 18, VD; 19, Weil_D; 20, Dossenheim; 21, BioPlanet_Como. Coordinates (CoordCH_E, CoordCH_N) refer to the Swiss coordinates system CH1903.

en: Table comprising all pertinent information for multiplex PCRs of species-specific nuclear microsatellite makers for Trichopria drosophilae, comprising all 21 newly developed markers, details on full sequences with GenBank accession numbers, primer sequences (including labeling and pig-tails), and repeat motives. PCRs with respective annealing temperatures (AnnealingTemp) refer to Type-It Multiplex PCR Kit (Qiagen, Hilden, Germany).

en:
 Nuclear microsatellite markers and genotype data for _Trichopria ddrosophilae_

This data set comprises (i) the characteristics of a set of 21 species-specific nuclear microsatellites for PCR amplification in _Trichopria drosophilae_ (ii) and genotype data for samples collected in southern Switzerland (Canton of Ticino), with few reference samples from Canton of Vaud, southern Germany, and northern Italy (lab-reared population).
Markers were developed by Ecogenics GmbH, Balgach (Switzerland), using MiSeq Nano 2x250 v2 format (on a mix of 10 individuals). Multiplex PCR assays for multilocus genotyping were established by Ecological Genetics (WSL Birmensdorf), and population genetic analyses are found in Gugerli et al., Agrarforschung Schweiz 2019.

biological-control

display_name: biological-control

drosophila-suzukii

display_name: drosophila-suzukii

multilocus-genotypes

display_name: multilocus-genotypes

nuclear-microsatellite-markers

display_name: nuclear-microsatellite-markers

population-genetics

display_name: population-genetics

simple-sequence-repeats

display_name: simple-sequence-repeats

trichopria-drosophilae

display_name: trichopria-drosophilae

en: Nuclear microsatellite markers for Trichopria drosophilae, parasitoid wasp on Drosophila suzukii


en: precipitation long-term climate-change wind-speed relative-humidity par swiss-forest-lab temperature meteo meteorology

en: Site photo of the forest station (VSB)

en: Site photo of the forest station from below (viewing upwards the slope).

en: Data plot of the forest station (VSB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Field station data (VSF)

en: Data file.

en: Data plot of the field station (VSF)

en: Forest station data (VSB)

en: Site photo of the field station (VSF)

en: Site photo of the field station from the side.

en: Site aerial photo (Visp)

en: Site aerial photo from both Visp stations. Source: Google. 2016. Site aerial photo from both Visp stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Visp in Switzerland where one station is located within a natural mixed forest stand (VSB) with Scots pine (_Pinus sylvestris_; 40-80 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, VSF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Visp is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Visp, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards