maintainer: Lisa Hülsmann

en: forest-inventory tree-mortality primeval-forests mortality-models fagus-sylvatica forest-reserves

en: Ukrainian data

en:
READ ME for

Hülsmann L, Bugmann H, Commarmot B, Meyer P, Zimmermann S, Brang P
Data from: Does one model fit all? Patterns of beech mortality in natural forests of three European regions.
Ecological Applications http://dx.doi.org/10.5061/dryad.h4s6t

Forest inventory data of beech for the development of individual-tree mortality models from strict forests reserves in Switzerland, Germany and Ukraine.

The data package provides the files
CH_reduced: inventory data of the reduced dataset from Switzerland that was used to assess the influence of additional environmental and stand characteristics on beech mortality
CH: inventory data from strict forest reserves in Switzerland
DE: inventory data from strict forest reserves in Germany
UA: inventory data from a primeval beech forest in Ukraine

A set of three consecutive inventories was used to generate records for the calibration of mortality models based on trees that were alive in the first and second inventory and either dead or alive in the third inventory.
Diameter at breast height: dbh (mm)
Annual relative basal area increment: relBAI (), calculated based on the first and the second dbh measurement as the compound annual growth rate of the trees basal area (Bigler and Bugmann 2004)
Status of the tree: y, 0 = alive, 1 = dead
Length of the mortality period: dt (years)

Additional environmental and stand characteristics were derived for the reduced Swiss dataset.
Note the varying seasonal level of the covariates considering the entire year, the growing season from April to September (G) and the winter month January to March (W).
All climatic covariates were calculated for both the ‘growth’ (2) and the ‘mortality’ period (3). The stand covariates were derived for the second inventory of each record (2).

Mean diameter at breast height: dbh.mean.2 (mm)
Interquartile range of diameter at breast height: dbh.IQR.2 (mm)
Median diameter at breast height: dbh.median.2 (mm)
Basal area per hectare: BA.2 (m2 ha-1)
Number of trees per hectare: N.2 (ha-1)
pH-value: pH ()
Available water capacity in the soil: AWC (mm)
Mean annual precipitation sum: P.2, P.3 (mm)
Mean precipitation sum during growing season: PG.2, PG.3 (mm)
Mean annual air temperature: mT.2, mT.3 (°C)
Mean air temperature during growing season: mTG.2, mTG.3 (°C)
Mean air temperature during winter months: mTW.2, mTW.3 (°C)
Mean growing degree-days: GDD.2, GDD.3 ()
Mean number of months during growing season with water deficit: mDEFdurG.2, mDEFdurG.3 ()
Mean annual maximum water deficit: mDEFmax.2, mDEFmax.3 (mm)
Overall maximum of the annual maximum water deficit: maxDEFmax.2, maxDEFmax.3 (mm)
Mean of cumulative water deficit during growing season: mDEFcumG.2, mDEFcumG.3 (mm)
Overall maximum of cumulative water deficitduring growing season: maxDEFcumG.2, maxDEFcumG.3 (mm)
Percentage of years with at least one month water deficit: percDEF.2, percDEF.3 (%)

en: Swiss data full

en: German data

en: Swiss data reduced

en:
The datasets comprise nearly 19’000 trees of European beech (_Fagus sylvatica_ L.) from unmanaged forests in Switzerland, Germany / Lower Saxony and Ukraine. Tree death was modelled as a function of size and growth, i.e., stem diameter (DBH) and relative basal area increment (relBAI). To explain the spatial and temporal variability in mortality patterns, we considered a large set of environmental and stand characteristics.

 Inventory data
The strict forest reserves in Switzerland and Germany had been established in the period of 1961-1975 and 1971-1974, respectively. Every reserve included up to 10 permanent plots ranging from 0.09 to 1.8 ha in size, with slightly irregular re-measurement intervals. Permanent plots with pure or mixed beech stands were selected from the reserves of both networks. Reserves with considerable wind disturbance during the monitored intervals were excluded from the analysis. In addition to data from the Swiss and German reserves, data from a 10 ha plot in the primeval beech forest Uholka in Western Ukraine including three remeasurements were used. The inventory data provide diameter measurements at breast height (dbh) for revisited trees with a diameter of more than 4, 7 and 6 cm for Switzerland, Germany and Ukraine, respectively.

 Mortality predictors
A set of three consecutive inventories was used to generate records for the calibration of mortality models based on trees that were alive in the first and second inventory and either dead or alive in the third inventory. As an explanatory variable, the annual relative basal area increment (relBAI) was calculated based on the first and the second dbh measurement as the compound annual growth rate of the trees basal area. Tree dbh in the second inventory was used in addition to relBAI to model tree status (alive or dead) of the third inventory.

To increase the generality of the mortality models, we selected environmental variables that are known to have a considerable influence on growth and mortality of beech. We emphasized the effects of water availability using a large set of drought characteristics that were calculated based on the local site water balance. We also related beech mortality to soil pH, temperature, precipitation and growing degree-days. Additionally, we considered stand characteristics that reflect the development stage, competition and structure of the forests.

 Further information
For further information, refer to Hülsmann _et al_. (2016) Does one model fit all? patterns of beech mortality in natural forests of three European regions. _Ecological Applications_.

fagus-sylvatica

display_name: fagus-sylvatica

forest-inventory

display_name: forest-inventory

forest-reserves

display_name: forest-reserves

mortality-models

display_name: mortality-models

primeval-forests

display_name: primeval-forests

tree-mortality

display_name: tree-mortality

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data from: Does one model fit all? patterns of beech mortality in natural forests of three European regions


maintainer: EnviDat Support

en: bark-beetles drought forest-fire extreme-events protective-effect protection-forest natural-hazards compound-events

state: active

type: dataset

media_type: application/pdf

en: Factsheet summarising the key results of the study (in German).

format: PDF

mimetype: application/pdf

en: Factsheet summarising the methods used in this project (in German).

en: Factsheet summarising the key results of the study (in French).

en: Case study website

media_type: text/html

en: Page of the case study on the project website. It includes figures fo all questions of the survey and additional synthesis graphs.

format: HTML

en: Conclusions and recommendations of the project (in German).

en: Factsheet summarising the key results of the study (in Italian).

en:
This file contains the anonymous answers to the survey for the case study in the protective forest, Val Mesolcina, GR, Switzerland within the BAFU Project "Wenn Risiken kumulieren - Analyse und Umgang mit unerwarteten Ereignissen und kombinierten Risiken".
The survey consists of two parts, based on different concepts: "top-down" and "bottom-up". Answers for both concepts are available in two different worksheets within the Excel file.

format: XLS

en: Description of the study site, extreme event (trigger event) and informations about the survey.

en:
This dataset contains the results of a case study analysing the potential impacts of a compound meteorological extreme event on the protective forest in the Val Mesolcina. These impacts were assessed in an experts survey. 29 Experts from practice, administration and science estimated the probabilities for a loss of the protective function due to a drought-related compound extreme event based on different hazard scenarios. The experts not only assessed these probabilities but also provided estimates about the reliability of the scenarios, other socio-economic consequences and options for adaptation.
This dataset contains the following information:
- Table with all (anonymised) answers from the survey
- Factsheets summarising the results and methods in German, French and Italian
- A detailed description of the study site and survey instructions
- Link to the project website wit illustrations for each individual question of the survey

bark-beetles

display_name: bark-beetles

compound-events

display_name: compound-events

drought

display_name: drought

extreme-events

display_name: extreme-events

forest-fire

display_name: forest-fire

natural-hazards

display_name: natural-hazards

protection-forest

display_name: protection-forest

protective-effect

display_name: protective-effect

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Experts survey protective forest and combined extremes in Val Mesolcina


en: meteorology climate-change swiss-forest-lab temperature wind-speed long-term par meteo relative-humidity precipitation

en: Data plot of the field station (NEF)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Field station data (NEF)

media_type: text/csv

en: Data file.

format: CSV

mimetype: text/csv

en: Site photo of the forest station (NEB)

en: Site photo of the forest station from below (viewing upwards the slope).

format: SERVICE

mimetype: image/jpeg

en: Forest station data (NEB)

en: Site aerial photo (Neunkirch)

en: Site aerial photo from both Neunkirch stations. Source: Google. 2016. Site aerial photo from both Neunkirch stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Data plot of the forest station (NEB)

en: Site photo of the field station (NEF)

en: Site photo of the field station from the side.

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Neunkirch in Switzerland where one station is located within a natural deciduous forest stand (NEB) with European beech (_Fagus sylvatica_; 160 yrs), sycamore maple (_Acer pseudoplatanus_; 160 yrs) and lime trees (_Tilia sp._; 110 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, NEF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Neunkirch is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Neunkirch, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


en: growth-reaction-to-drought-stress leaf-senescence european-summer-drought fagus-sylvatica forests drought-2018

en: Drought and Beech: 1000 beeches data set

media_type: application/zip

en: The data set comprises data from the Drought and Beech 1000 beeches project. The actual data file with monitoring data of 963 beech trees in northern Switzerland over four years (Drought_and_Beech_1000beeches_Data_v1.0.csv), a metadata file with column descriptions (Drought_and_Beech_1000beeches_Legend_v1.0.csv), and a file defining the different survey periods (Drought_and_Beech_1000beeches_Survey_periods_v1.0.csv).

format: ZIP

en: This study investigated multi-year drought impacts on beech forests through a unique large-scale monitoring of 963 individual beech trees, which showed either premature leaf discoloration during the drought in summer 2018 or no visible damage. We conducted the study in two highly drought-affected regions in northern Switzerland and one less drought-affected region located further south. We quantified the development of crown dieback and tree mortality as well as secondary drought damage, i.e. the presence of bleeding cankers and bark beetle infestations, in these trees for three consecutive years. We also determined the impact of several potential climate- and stand-related (predisposing) factors on mortality and drought legacy processes.

european-summer-drought

display_name: european-summer-drought

fagus-sylvatica

display_name: fagus-sylvatica

forests

display_name: forests

growth-reaction-to-drought-stress

display_name: growth-reaction-to-drought-stress

leaf-senescence

display_name: leaf-senescence

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data on multi-year drought impacts on European beech in northern Switzerland


en: richness cities hymennoptera natural-enemies performance-traits urbanization wasps bees hymenoptera cavity-nesting urban-ecology life-history-traits

en: Information on the study sites

en: For each site, the IDs, city, coordinates, structure where the trapnest was attached and height is provided

en: Performance traits and life-history traits

en:
It contains the data of two performance traits (survival and parasitism) and two life-history traits (sex ratio and number of offspring per nest for the hosts) at the nest level.

We assessed performance traits, i.e. survival and parasitism, at the individual cell level. Specifically, for each cell within a nest, we noted whether the cell was alive or dead (survival), and whether it had a parasite or not (parasitism). Further, we calculated the parasitism rate as the number of cells with a parasite divided by the total number of cells. Concerning life-history traits, we calculated the total number of brood cells per nest as the total number of brood cells within a single nest, regardless of whether the larvae were dead, alive or parasitized. Finally, we used the probability that a femalehost emerged from a given cell as a proxy for the sex ratio. To do so, we first identified the sex of the individual hosts. Then, we noted it in a binary way to indicate whether the host was a female or not. We could identify the sex of all hatched hosts. Further, because CNBW first lay females and then males, on some occasions we could also identify the host sex in dead and parasitized cells, that is, when we had already identified the sex of the preceding and the following cells.

en: Taxonomic metrics on CNBW

en:
The data contains at the site level the species richness of cavity-nesting bees and wasps. It also contains site level estimates of the life-history traits and the performance traits.

We calculated species richness, abundance, and number of nests of the hatched hosts separately for bees and wasps. We calculated the abundance of hatched hosts as the number of brood cells where an individual emerged, i.e. the total number of brood cells minus the number of parasitized cells and the number of cells with no emergence for reasons other than parasitism.

City codes: An =Antwerp, Pa = Paris; Po = Poznan; Ta =Tartu; Zu= Zurich

en: Predictors of the study

en: Taxonomic metrics on the natural enemies

en: It contains the species richness and the abundance of natural enemies per site.

en:
 Background
Urban ecosystems are associated with socio-ecological conditions that can filter and promote taxa. However, the strength of the effect of ecological filtering on biodiversity could vary among biotic and abiotic factors. Here, we provide the data used to investigate the effects of habitat amount, temperature, and host-enemy biotic interactions in shaping communities of cavity-nesting bees and wasps (CNBW) and their natural enemies. To do so, we installed trap-nests in 80 sites distributed along urban intensity gradients in 5 European cities (Antwerp, Paris, Poznan, Tartu and Zurich). We quantified the species richness and abundance of CNBW hosts and their natural enemies, as well as two performance traits (survival and parasitism) and two life-history traits (sex ratio and number of offspring per nest for the hosts).
The dataset contains:
* The taxonomic metrics on CNBW
* The taxonomic metrics on the natural enemies from CNBW
* The life-history traits and performance traits

bees

display_name: bees

cavity-nesting

display_name: cavity-nesting

cities

display_name: cities

hymennoptera

display_name: hymennoptera

hymenoptera

display_name: hymenoptera

life-history-traits

display_name: life-history-traits

natural-enemies

display_name: natural-enemies

performance-traits

display_name: performance-traits

richness

display_name: richness

urban-ecology

display_name: urban-ecology

urbanization

display_name: urbanization

wasps

display_name: wasps

en: Community structure, life-history traits and performance traits of urban cavity-nesting bees annd wasps


root-traits

maintainer: Ivano Brunner

title_for_slug: root-traits

en: fine-root-traits belowground-biomass soil-coring ingrowth-cores drought

en: Root-traits

mimetype: application/zip

en:
Fine-root traits of Scots pine in response to enhanced soil water availability deriving from long-term irrigation in the Pfynwald

Data_Fig.1.xlsx
Fine-root biomass of the topsoil (0-10 cm) in the dry and irrigated treatment of the Scots pine forest of the years 2003 to 2016 recorded by soil coring

Data_Tab1+2_2005.xlsx
Fine-root traits from roots of ingrowth cores from 2005 after two years of growth in the dry and irrigated treatment of the Scots pine forest

Data_Tab1+2_2016.xlsx
Fine-root traits from roots of ingrowth cores from 2016 after two years of growth, and from roots of the soil-coring sampling from 2016 in the dry and irrigated treatment of the Scots pine forest

belowground-biomass

display_name: belowground-biomass

drought

display_name: drought

fine-root-traits

display_name: fine-root-traits

ingrowth-cores

display_name: ingrowth-cores

soil-coring

display_name: soil-coring


en: cryosphere climate-change-impact uncertainty snow-water-equivalent rain-on-snow natural-climate-variability

en: climate realizations

en: The dataset contains for three variables (snow water equivalent, surface water input and liquid precipitation) 50 realizations of current and future climate periods for two time horizons (mid end end of century), two emission senarions (RCP 4.5 and 8.5) and 10 climate model chains (all EUR11 chains within CH2018). To quantify natural climate variability for projections of snow conditions and resulting rain-on-snow (ROS) flood events, a weather generator was applied to simulate inherently consistent climate variables for multiple realizations of current and future climates at 100 m spatial and hourly temporal resolution over a 12 x 12 km high-altitude study area in the Swiss Alps. The output of the weather generator was used as input for subsequent simulations with an energy balance snow model. The data was extracted in 2021 from original model output.

climate-change-impact

display_name: climate-change-impact

cryosphere

display_name: cryosphere

natural-climate-variability

display_name: natural-climate-variability

rain-on-snow

display_name: rain-on-snow

snow-water-equivalent

display_name: snow-water-equivalent

uncertainty

display_name: uncertainty

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Multiple realizations of daily snow water equivalent, surface water input and liquid precipitation projections for mid- and late-century


maintainer: Joan Casanelles Abella

en: paris hylaeus-communis osmia-cornuta poznan plant-pollinator-interactions chelostoma-florisomne antwerp zurich dna-metabarcoding osmia-bicornis tartu urban-ecology cavity-nesting-bees trap-nest

en: Explanation data variables

en: Information on the study sites

en: For each site, IDs, city, coordinates, structure where trapnest was attahced and height of the trapnest is provided

en: Larval food composition

en: Urbanization poses threats and opportunities for the biodiversity of wild bees. A main gap relates to the food preferences of wild bees in urban ecosystems, which usually harbour large numbers of plant species, particularly at the larval stage. This data sets describes the larval food of four wild bee species (i.e. Chelostoma florisomne, Hylaeus communis, Osmica bicornis and Osmia cornuta) and three genera (i.e. Chelostoma sp., Hylaeus sp, and Osmia sp.) common in urban areas in five different European cities (i.e. Antwerp, Paris, Poznan, Tartu and Zurich). This data results from a European-level study aimed at understanding the effects of urbanization on biodiversity across different cities and citiscapes, and a Swiss project aimed at understanding the effects of urban ecosystems in wild bee feeding behaviour. Wild bees were sampled using standardized trap-nests in 80 sites (32 in Zurich and 12 in each of the remaining cities), selected following a double gradient of available habitat at local and landscape scales. Larval pollen was obtained from the bee nests and identified using DNA metabarconding. The data provides the plant composition at the species or genus level of the different bee nests of the studied species in the studied sites of the five European cities. For Hylaeus communis, this is the first study in reporting larval food composition.

antwerp

display_name: antwerp

cavity-nesting-bees

display_name: cavity-nesting-bees

chelostoma-florisomne

display_name: chelostoma-florisomne

dna-metabarcoding

display_name: dna-metabarcoding

hylaeus-communis

display_name: hylaeus-communis

osmia-bicornis

display_name: osmia-bicornis

osmia-cornuta

display_name: osmia-cornuta

paris

display_name: paris

plant-pollinator-interactions

display_name: plant-pollinator-interactions

poznan

display_name: poznan

tartu

display_name: tartu

trap-nest

display_name: trap-nest

zurich

display_name: zurich

en: Larval food composition of four wild bee species in five European cities


maintainer: Ionut Iosifescu Enescu

en: open-source hpc open-data reproducibility open-science research-data-management jupyter-notebooks

en: Open Science Support @ WSL (Poster)

en:
This poster was originally created for the swissuniversities Open Science Action Plan: Kick-Off Forum, and showed to the audience on 17.10.2019. It illustrates how the environmental data portal EnviDat provides the tools for fostering Open Science and Reproducibility of scientific research at WSL.

Supporting open science is a highly relevant user requirement for EnviDat and for implementing FAIR (Findability, Accessibility, Interoperability and Reusability) principles at dataset level.
EnviDat encourages WSL scientists to complement data publication with a complete description of research methods and the inclusion of the open source software, code or scripts used for processing the dataset or for obtaining the published results. By openly publishing open software (e.g. as Jupyter notebooks) alongside research data sets, researchers can contribute to mitigate reproducibility issues.

EnviDat also promotes and supports, where possible and practical, the publication of software as Jupyter notebooks. Jupyter notebooks provide a solution for improved documentation and interactive execution of open code in a wide range of programming languages (Python, R, Octave/Matlab, Java or Scala). These programming languages are widely used in environmental research at WSL and well supported by the Jupyter-compatible kernels. We have sucessfully interfaced EnviDat-hosted notebooks with the WSL High-Performance Computing (HPC) Linux Cluster through a JupyterHub/JuypterLab beta installation on the HPC cluster implemented in close collaboration with the WSL IT-Services.
For existing software that cannot be easily migrated to Jupyter Notebooks, the Open Science and Reproducibility is assisted by containerisation. We have proven that several Singularity containers can successfully run on WSL's HPC cluster.

Finally, the researchers can upload the data/results complemented by code (e.g. as Jupyter Notebooks, or Singularity containers) and any additional documentation in EnviDat. Consequently, they will receive a DOI for the entire dataset, which they can reference in their science paper in order to publish a more reproducible research.

_License_: This poster is released by WSL and the EnviDat team to the public domain under a Creative Commons 4.0 CC0 "No Rights Reserved" international license. You can reuse this poster in any way you want, for any purposes and without restrictions.

hpc

display_name: hpc

jupyter-notebooks

display_name: jupyter-notebooks

open-data

display_name: open-data

open-science

display_name: open-science

open-source

display_name: open-source

reproducibility

display_name: reproducibility

research-data-management

display_name: research-data-management

en: Open Science Support at the Swiss Federal Research Institute WSL. The EnviDat Concept


maintainer: Achille Capelli

en: gnss lwc liquid-water-content snow-water-equivalent snow swe gps

en: GNSS derived SWE, LWC and HS from Klosters (1210 m a.s.l. ,46°51’49’’N, 9°53’17’’E) for the two winters 2018-20

en: GNSS derived SWE, LWC and HS from Küblis at 820 m a.s.l. (46°54’48’’N, 9°46’54’’E) for the two winters 2018-20

en: Daily data from Klosters (1210 m a.s.l. ,46°51’49’’N, 9°53’17’’E) for the two winters 2018-2020. These data were processed to daily values from the other data files.

en: Snow profiles data from Küblis at 820 m a.s.l. (46°54’48’’N, 9°46’54’’E) for the two winters 2018-2020.

en: Daily observer data from Küblis at 820 m a.s.l. (46°54’48’’N, 9°46’54’’E) for the two winters 2018-2020.

en: Snow and meteo data from automatic sensors from Küblis at 820 m a.s.l. (46°54’48’’N, 9°46’54’’E) for the two winters 2018-2020.

en: Daily data for Laret at 1510 m a.s.l. (46°50’2’’N, 9°52’17’’E) for the two winters 2018-2020. These data were processed to daily values from the other data files.

en: GNSS derived data for Laret at 1510 m a.s.l. (46°50’2’’N, 9°52’17’’E) for the two winter 2018-2020.

en: Snow and meteo data from automatic sensors for the site Weissfluhjoch at 2540 m a.s.l (46°49’47’’ N, 9°48’34’’E) for the two winters 2018-2020.

en: GNSS derived SWE, HS, and LWC for the site Weissfluhjoch at 2540 m a.s.l (46°49’47’’ N, 9°48’34’’E) for the two winters 2018-2020.

en: Daily data from Küblis at 820 m a.s.l. (46°54’48’’N, 9°46’54’’E) for the two winters 2018-2020. These data were processed to daily values from the other data files.

en: Daily observer data for the site Weissfluhjoch at 2540 m a.s.l (46°49’47’’ N, 9°48’34’’E) for the two winters 2018-2020.

en: Manual profiles

en: Data of the traditional manual profiles for the locations Weissfluhjoch, Klosters and Küblis. For the location of Küblis there are no traditional manual profile data. We provided the data as both PDF and .CAAML format (See https://niviz.org/ or http://caaml.org/Schemas/V5.0/Profiles/SnowProfileIACS/CAAMLv5_SnowProfileIACS.pdf). Moreover, we added LWC and density profiles when available (all locations).

en: Daily data for the site Weissfluhjoch at 2540 m a.s.l (46°49’47’’ N, 9°48’34’’E) for the two winters 2018-2020. These data were processed to daily values from the other data files.

en: Snow and meteo data from automatic sensors for Laret at 1510 m a.s.l. (46°50’2’’N, 9°52’17’’E) for the two winter 2018-2020.

en: Profile data for Laret at 1510 m a.s.l. (46°50’2’’N, 9°52’17’’E) for the two winter 2018-2020.

en: Webcam images

en: Webcam images showing some typical differences in the snow conditions at the four sites (Küblis, Klosters, Laret and Weissfluhjoch) for two time periods (14-18.3.2019 and 27.1-11.2.2020). Both time periods included a precipitation event with partial rain-on–snow occurring at the lower locations.

en: Snow and meteo data from automatic sensors from Klosters (1210 m a.s.l. ,46°51’49’’N, 9°53’17’’E) for the two winters 2018-2020.

en: Daily observer data from automatic sensors from Klosters (1210 m a.s.l. ,46°51’49’’N, 9°53’17’’E) for the two winters 2018-2020.

en: Snow profiles data for the site Weissfluhjoch at 2540 m a.s.l (46°49’47’’ N, 9°48’34’’E) for the two winters 2018-2020.

en: Snow profiles data from Klosters (1210 m a.s.l. ,46°51’49’’N, 9°53’17’’E) for the two winters 2018-2020.

en: This database contains GNSS derived snow water equivalent (SWE), liquid water content (LWC), and snow height (HS) and reference data collected during the two winter 2018-2020 at 4 sites Weissfluhjoch (2540 m asl, 46°49’47’’ N, 9°48’34’’E), Laret (1515 m asl, . 46°50’2’’N, 9°52’17’’E), Klosters (1200 m asl, 46°51’49’’N, 9°53’17’’E), and Küblis (815 m asl, 46°54’48’’N, 9°46’54’’E).

gnss

display_name: gnss

gps

display_name: gps

liquid-water-content

display_name: liquid-water-content

lwc

display_name: lwc

snow

display_name: snow

snow-water-equivalent

display_name: snow-water-equivalent

en: Snow water equivalent measurements with low-cost GNSS receivers along a steep elevation gradient in the East-ern Swiss Alps


maintainer: Dominique Weber

en: management mowing remote-sensing landsat sentinel-2 use-intensity grassland land-use

en: Grassland-use intensity map 2020

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2020. See readme file for more details.

format: GeoTIFF

en: Grassland-use intensity map 2019

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2019. See readme file for more details.

en: Webcam-based reference data

en: Webcam-based reference data from 2020 and 2021 (see readme).

en: Preview time of 1st grassland management event 2020

media_type: image/png

en: Spatial distribution of the timing (day of year; DOY) of the first management event for Switzerland and for three zoomed-in regions (a, b, c). The three zoomed-in regions show different grassland-use intensities, which are reflected in the timing of the first event of the year (Weber et al., 2023; IN REVIEW)

format: PNG

en: Preview number of grassland management events 2020

en: Spatial distribution of the number of management events for Switzerland and for three zoomed-in regions (a, b, c). The three zoomed-in regions show different grassland-use intensities, which are reflected in the distribution of management frequency (Weber et al., 2023; IN REVIEW)

en: Grassland-use intensity map 2021

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2021. See readme file for more details.

en: Grassland-use intensity map 2018

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2018. See readme file for more details.

en: Readme

media_type: text/plain

en: Metadata and description of the maps and webcam-based reference data.

format: TXT

en:
A rule-based algorithm [(Schwieder et al., 2022)](https://doi.org/10.1016/j.rse.2021.112795) was used to produce annual maps for 2018–2021 of grassland-management events, i.e. mowing and/or grazing, for Switzerland using Sentinel-2 and Landsat 8 satellite time series. All satellite images were processed with the [FORCE](https://force-eo.readthedocs.io) framework.

The resulting maps provide information on the number and timing of grassland-management events at a spatial resolution of 10 m × 10 m for the whole of Switzerland. For the final maps, permanent grasslands were masked using a variety of land-use layers, according to [Huber et al. (2022)](https://doi.org/10.1002/rse2.298) but replacing the crop mask with the agricultural-use data from the cantons.

We assessed the detection of management events based on independent reference data, which we acquired from daily time series of publicly available webcams that are widely distributed across Switzerland. We further tested the ecological relevance of the generated intensity measures in relation to nationwide biodiversity data (see [Weber et al., 2023](https://doi.org/10.1002/rse2.372)).

The webcam-based reference data used for verification was subsequently added on 14.02.2024.

grassland

display_name: grassland

land-use

display_name: land-use

landsat

display_name: landsat

management

display_name: management

mowing

display_name: mowing

remote-sensing

display_name: remote-sensing

use-intensity

display_name: use-intensity

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Grassland-use intensity maps for Switzerland


maintainer: Matthias Haeni

en: par wind-speed long-term swiss-forest-lab climate-change meteorology precipitation relative-humidity temperature meteo

en: Site photo of the forest station (OTB)

en: Site photo of the forest station from above (viewing downwards the slope).

en: Field station data (OTF)

en: Data file.

en: Data plot of the forest station (OTB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Forest station data (OTB)

en: Data plot of the field station (OTF)

en: Site aerial photo (Othmarsingen)

en: Site aerial photo from both Othmarsingen stations. Source: Google. 2016. Site aerial photo from both Othmarsingen stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Site photo of the field station (OTF)

en: Site photo of the field station from below (viewing upwards the slope).

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Othmarsingen in Switzerland where one station is located within a natural deciduous forest stand (OTB) with European beech (_Fagus sylvatica_; 120-140 yrs) and lime trees (_Tilia sp._; 120-140 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, OTF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Othmarsingen is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Othmarsingen, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1996 onwards


maintainer: Andrin Caviezel

en: rockfall-experiments rockfall-runout stonenode stonenodedata induced-rockfall deposition-points natural-hazards dem rockfall sensor-stream

en: Induced Rockfall Data, Tschamut, GR

en:
 Induced Rockfall Experimental Data, Tschamut, GR, Switzerland

The archive contains site specific geographical data as well as the deposition points of manually induced rockfall by releasing differently shaped boulders with 30–80 kg of mass. Additionally availabe are the StoneNode v1.0 sensor streams for the equipped rocks.

The _OverviewFigures_ file serves as quick representation of the included data. It also contains the overview table for the rock masses in order to set the dimensions accordingly in RAMMS::ROCKFALL.

The archive contains the following folders:
<\ul>
* DEM: ArcGIS compatible DEM Tschamut_DEM_2m (grid resolution of 2 m) as well as the .asc grid used in RAMMS::ROCKFALL simulations
* _DepositionPoints_: containing two folders _RF Tschamut Frozen_ and _RF Tschamut WET_ containing each a shapefile with the complete deposition data of each series as well as deposition shapfiles for each rock shape.
* _DigitizedRocks_: Digitized point clouds of the used rocks as used for RAMMS::ROCKFALL simulations (.pts files) (dimensions have to be checked).
* _Orthofoto_: Orthophoto of the experimental site obtained via UAV with 5 cm resolution.

en: StoneNode v1.0 Data for equipped experimental Runs.

en: Corresponding StoneNode v1.0 data streams belonging to the deposition points.

en:
 Dataset of an experimental campaign of induced rockfall in Tschamut, Grisons, Switzerland.

The data archive contains site specific geographical data such as DEM and orthophoto as well as the deposition points of manually induced rockfall by releasing differently shaped boulders with 30–80 kg of mass. Additionally available are all the StoneNode data streams for rocks equipped with a sensor. The data set consists of

* Deposition points from two series (wet (27/10/2016) and frozen (08/12/2016) ground)
* Digital Elevation Model (grid resolution 2 m) obtained via UAV
* Orthophoto (5 cm resolution) obtained via UAV
* Digitized rock point clouds (.pts input files for RAMMS::ROCKFALL)
* StoneNode v1.0 raw data stream for equipped rocks.

Further information is found in

* A. Caviezel et al., _Design and Evaluation of a Low-Power Sensor Device for Induced Rockfall Experiments_, IEEE Transactions on Instrumentation and Measurement, 2018, 67, 767-779, http://ieeexplore.ieee.org/document/8122020/
* P. Niklaus et al., _StoneNode: A low-power sensor device for induced rockfall experiments_, 2017 IEEE Sensors Applications Symposium (SAS), 2017, 1-6, http://ieeexplore.ieee.org/document/7894081/

dem

display_name: dem

deposition-points

display_name: deposition-points

induced-rockfall

display_name: induced-rockfall

natural-hazards

display_name: natural-hazards

rockfall

display_name: rockfall

rockfall-experiments

display_name: rockfall-experiments

rockfall-runout

display_name: rockfall-runout

sensor-stream

display_name: sensor-stream

stonenode

display_name: stonenode

stonenodedata

display_name: stonenodedata

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Induced Rockfall Dataset (Small Rock Experimental Campaign), Tschamut, Grisons, Switzerland


maintainer: James W. Kirchner

en: precipitation tracer plynlimon stable-water-isotopes streamflow chloride catchment deuterium

en: 7-hourly stable water istopes

en: Data set of 7-hourly stable water isotope data measured at Carreg Wen (precipitation) and Upper Hafren (streamflow).

mimetype: text/plain

en: Weekly stable water isotopes

en: Data set of weekly stable water isotope data collected at Carreg Wen (precipitation) and Lower Hafren and Tanllwyth (streamflow).

en: Data Set Documentation

en: This file contains a documentation of the data sets, including references to other helpful documentations.

en: The data base contains timeseries of stable water isotopes in precipitation and streamflow at Plynlimon, Wales, UK. One data set contains weekly stable water isotope data from the Lower Hafren and Tanllwyth catchments, and the other data set contains 7-hourly stable water isotope data from Upper Hafren. Both data sets also include chloride concentrations in precipitation and streamflow.

catchment

display_name: catchment

chloride

display_name: chloride

deuterium

display_name: deuterium

plynlimon

display_name: plynlimon

stable-water-isotopes

display_name: stable-water-isotopes

streamflow

display_name: streamflow

tracer

display_name: tracer

en: Stable water isotopes in precipitation and streamflow at Plynlimon, Wales, UK


data-analysis-toolkits

title_for_slug: data-analysis-toolkits

en: statistics bayesian-inference hypothesis-testing data-analysis uncertainty error-propagation

en: Toolkit 9: Experimentwise error rates and statistical fishing expeditions

en: Statistical fishing expeditions, and how to avoid being misled by them

en: Toolkit 4: confidence intervals

en: Toolkit 10: linear regression

en: An overview of the math, logic, and pitfalls of ordinary least-squares linear regression

en: Toolkit 3: tools for transforming data

en: The ladder of powers and a few other cool transformations

en: toolkit 6: averaging in nonlinear functions

en: The average of a nonlinear function will not equal the function evaluated at its average inputs (the mean of the function will differ from from the function of the mean). This toolkit shows how to estimate that averaging bias.

en: Toolkit 5: uncertainty analysis and error propagation

en: Gaussian error propagation, monte carlo methods, and first-order, second-moment error propagation

en: Toolkit 7: hypothesis testing, significance, and power

en: An overview of basic concepts -- and common pitfalls -- in statistical hypothesis testing, statistical significance, and power analysis

en: Toolkit 8: Hodges-Lehmann estimators

en: A quick introduction to Hodges-Lehmann estimators (nonparametric measures of effect size)

en: Toolkit 1: graphically displaying data distributions

en: Toolkit 11: serial correlation

en: Tools for detecting and correcting for serial correlation in analyses of time series

en: Toolkit 2: quantifying data distributions using descriptive statistics

en: Toolkit 12: weighted averages and their uncertainties

en: There are two different ways to calculate the uncertainty of a weighted average. Software packages often don't tell you which one they are reporting, and the resulting errors can be huge.

en:
These are condensed notes covering selected key points in data analysis and statistics. They were developed by James Kirchner for the course "Analysis of Environmental Data" at Berkeley in the 1990's and 2000's. They are not intended to be comprehensive, and thus are not a substitute for a good textbook or a good education!

License: These notes are released by James Kirchner under a Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) license.

bayesian-inference

display_name: bayesian-inference

data-analysis

display_name: data-analysis

error-propagation

display_name: error-propagation

hypothesis-testing

display_name: hypothesis-testing

statistics

display_name: statistics

uncertainty

display_name: uncertainty

en: Data analysis toolkits


en: uetliberg flora-change occurrence plant-species zurich

en:
The list gives the clearly identifiable plant species from Schinz (1775). Die Reise auf den Uetliberg. Verlag des Waysenhauses, Zürich). Several species given in Schinz (1775) are not identifiable to the species level and are not included in the list. Similarly, Vicia pisiformis, Erbsenartige Wicke, given by Schinz (1775) is probably a misidentification and also not included in the list.

Latin plant species name Schinz 1775: Latin plant name (if) given by Schinz (1775); na: not available
German plant species name Schinz 1775: German plant name given by Schinz (1775)
Latin plant species name Info Flora 2024: Latin plant name according to www.infoflora.ch in 2024
German plant species name Info Flora 2024: German plant name according to www.infoflora.ch in 2024
Plant species still occurring in 2020: Plant species given in Schinz (1775) still occurring at the Uetliberg in 2020 (Zürcherische Botanische Gesellschaft. 2020. Flora des Kanton Zürich. Haupt, Bern); occurrence of Thesium alpinum, Alpen-Bergflachs, according to floristic knowledge of Rolf Holderegger and Michèle Büttner; 1: still occurring; 0: no longer occurring / extinct.

en:
The list gives the clearly identifiable plant species from Schinz (1775). Die Reise auf den Uetliberg. Verlag des Waysenhauses, Zürich). Several species given in Schinz (1775) are not identifiable to the species level and are not included in the list. Similarly, *Vicia pisiformis*, Erbsenartige Wicke, given by Schinz (1775) is probably a misidentification and also not included in the list.
Latin plant species name Schinz 1775: Latin plant name (if) given by Schinz (1775); na: not available
German plant species name Schinz 1775: German plant name given by Schinz (1775)
Latin plant species name Info Flora 2024: Latin plant name according to www.infoflora.ch in 2024
German plant species name Info Flora 2024: German plant name according to www.infoflora.ch in 2024
Plant species still occurring in 2020: Plant species given in Schinz (1775) still occurring at the Uetliberg in 2020 (Zürcherische Botanische Gesellschaft. 2020. Flora des Kanton Zürich. Haupt, Bern); occurrence of *Thesium alpinum*, Alpen-Bergflachs, according to floristic knowledge of Rolf Holderegger and Michèle Büttner; 1: still occurring; 0: no longer occurring / extinct.

flora-change

display_name: flora-change

occurrence

display_name: occurrence

plant-species

display_name: plant-species

uetliberg

display_name: uetliberg

zurich

display_name: zurich

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Plant species list from 1775 and 2020 for Uetliberg Zürich


en: catchment-data meteorological-data snowpack snow-hydrology rain-on-snow

en: The file contains all data needed to run simulations with the snow cover model SNOWPACK.

en: Meteorological data used to run SNOWPACK for 58 catchments in the Swiss Alps. The data consists of a 2 km grid of "virtual meteorological stations" for each catchment. It was used to simulate snow cover processes during rain-on-snow events, therefore meteorological data of each catchment contains at least one rain-on-snow event. Further information can be found in the attached readme.txt and in Würzer & Jonas et al. (2017), currently under review in Hydrological Processes.

catchment-data

display_name: catchment-data

meteorological-data

display_name: meteorological-data

rain-on-snow

display_name: rain-on-snow

snow-hydrology

display_name: snow-hydrology

snowpack

display_name: snowpack

en: Meteorological data for investigation of rain-on-snow events in 58 catchments in Switzerland


en: beech temperate-forests forest-reserves swiss-plateau forest-in

en: Data description

en: This document briefly describes the datasets.

en: Results lying deadwood

en: The file results_lying_deadwood.csv contains results of the lying deadwood survey.

en: Results habitat trees

en: The file results_habitat_trees.csv contains results for the number of habitat trees.

en: Results regeneration

en: The file results_regeneration.csv contains results of the regeneration survey.

en: Lookup

en: The file lookup.csv contains description for the values shown in the 5 result tables.

en: Results TreMs

en: The file results_trems.csv contains results for the density of TreMs per ha.

en: Results trees

en:
The file results_trees.csv contains results of living, standing and lying and dead standing
trees as well as for stumps (trees found on the plot but broken / cut below 1.3 m).

en:
The Jorat is one of the largest continously forested areas in the Swiss Plateau. On a forested area of 778 ha, the Parc Naturel du Jorat (PNJ), a periurban parc, has been established in 2022. To document the initial state of the forest within the perimeter of the PNJ, a sample plot inventory (SPI) was carried out on 132 sample plots (SP) in winter 2021/22.
This dataset contains results from this sample plot inventory. It consists of the following files:
- results_trees.csv: Results for or living and dead trees.
- results_regeneration.csv: Results for trees with DBH < 7.0 cm, assessed in three height classes.
- results_lying_deadwood.csv: Results for lying deadwood, assessed no three line transects
- results_trems.csv: Results for occurence of tree related microhabitats (TreMs)
- results_habitat_trees.csv: Results for occurence / densities of trees carrying at least one TreM or with a DBH >= 80 for living trees or >= 36 cm for dead trees respectively.
- lookup.csv: Contains lookup tables which describe the respective results in-depth.
- data_description.pdf: Briefly describes the datasets mentioned above.

beech

display_name: beech

forest-in

display_name: forest-in

forest-reserves

display_name: forest-reserves

swiss-plateau

display_name: swiss-plateau

temperate-forests

display_name: temperate-forests

en: Sample plot inventory data form the Parc Naturel du Jorat


en: raclets anemometer wind-velocity wind-speed wind-direction wind

en: Sonic temperature

en: The data set contains values of temperature (°C) measured with the anemometer at a sampling frequency of 20 Hz.

en: Sonic wind component v

en:
The data contains values for v direction of the wind in a sampling frequency of 20 Hz.
Erroneour spikes were filterd in two steps.

1. Define moving window uₓ = u(i-3:i+3)
2. If u(i)-mean(uₓ) > 2*std(uₓ):u(i) = NaN

Frozen detectors resulted in continuous zero values (not filtered).
The wind speed and direction were calculated as follows:

wind speed = sqrt(u² + v²)
wind direction = 180° + (180° / PI)* arctan2 (-u, -v)

en: Sonic wind component w

en:
The data contains values for w direction of the wind in a sampling frequency of 20 Hz.
Erroneour spikes were filterd in two steps.

1. Define moving window uₓ = u(i-3:i+3)
2. If u(i)-mean(uₓ) > 2*std(uₓ):u(i) = NaN

Frozen detectors resulted in continuous zero values (not filtered).
The wind speed and direction were calculated as follows:

wind speed = sqrt(u² + v²)
wind direction = 180° + (180° / PI)* arctan2 (-u, -v)

en: Sonic wind component u

en:
The data contains values for u direction of the wind in a sampling frequency of 20 Hz.
Erroneour spikes were filterd in two steps.

1. Define moving window uₓ = u(i-3:i+3)
2. If u(i)-mean(uₓ) > 2*std(uₓ):u(i) = NaN

Frozen detectors resulted in continuous zero values (not filtered).
The wind speed and direction were calculated as follows:

wind speed = sqrt(u² + v²)
wind direction = 180° + (180° / PI)* arctan2 (-u, -v)

en: Sonic time

en: The data set contains the time in YYYY-mm-dd HH:MM:SS.sss for the anemometer data. The time is given in UTC+1.

en: A Young 81000 sonic anemomenter was deployed at Gotschnagrat (LON: 46.859 LAT: 9.849) to record three components of the wind velocity (u, v, w in [m s‾ ¹]) and air temperature (Ts in [°C]). The anemomenter was mounted in direction North at a height of 1.5 m above snow surface at the beginning. The time within each data set is given in UTC+1. Instrument specifications can be found [here](http://www.youngusa.com/Manuals/81000-90(I).pdf) .

anemometer

display_name: anemometer

raclets

display_name: raclets

wind

display_name: wind

wind-direction

display_name: wind-direction

wind-speed

display_name: wind-speed

wind-velocity

display_name: wind-velocity

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Snow Drift Station - 3D Ultrasonic


maintainer: Yohann Chauvier

en: conservation filtering flags range-maps landsca gbif taxonomy large-scale hard-limit occurrence-records species-distribution synonyms accepted-name r-package ecoregions species-observations

en: gbif.range R package version 0.2 (deprecated)

en: GitHub URL

en: gbif.range R package version 1.1 (current)

en: wsl.gbif R package version 0.1 (deprecated)

en: Test version, not to be used.

en: Although species range may be obtained using expert maps or modeling methods, expert data is often species-limited and statistical models need more technical expertise as well as many species observations. When unavailable, such information may be extracted from the Global Biodiversity Information facility (GBIF), the largest public data repository inventorying georeferenced species observations worldwide. However, retrieving GBIF records at large scale may be tedious if users are unaware of specific tools and functions that need to be employed. Here we present *gbif.range*, an R library that contains automated methods to generate species range maps from scratch using in-house ecoregions shapefiles and an easy-to-use GBIF download wrapper. Finally, this library also offers a set of additional very useful parameters and functions for large GBIF datasets (generate doi, extract GBIF taxonomy, records filtering...). [gbif.range R project](https://github.com/8Ginette8/gbif.range)

accepted-name

display_name: accepted-name

conservation

display_name: conservation

ecoregions

display_name: ecoregions

filtering

display_name: filtering

flags

display_name: flags

gbif

display_name: gbif

hard-limit

display_name: hard-limit

landsca

display_name: landsca

large-scale

display_name: large-scale

occurrence-records

display_name: occurrence-records

r-package

display_name: r-package

range-maps

display_name: range-maps

species-distribution

display_name: species-distribution

species-observations

display_name: species-observations

synonyms

display_name: synonyms

taxonomy

display_name: taxonomy

en: gbif.range - An R package to generate species range maps based on ecoregions and a user-friendly GBIF wrapper


maintainer: Michael Lehning

en: alpine3d-simulations snow-hydrology alpine3d snow-cover snow snow-distribution alpine-precipitation

en: ADS datasets and simulation inputs

en: The file contains the ADS datasets of snow depth and input data used for simulations.

en:
Dataset (Model input, snow distribution and validation) for the precipitation scaling paper, which should be cited along with the data set citation.

This data is useful for distributed hydrological modelling or other tasks that involve the study of snow distribution and precipitation in the high Alpine.

The format of the data is for Alpine3D (models.slf.ch) model runs but other models could be used, too.

Please cite:

_Vögeli, C., Lehning, M., Wever, N., Bavay M., 2016: Scaling Precipitation Input to Spatially Distributed Hydrological Models by Measured Snow Distribution., Front. Earth Sci. 4: 108. doi: 10.3389/feart.2016.00108._

Dataset is provided as a single zip file.
The archive contains two directories, the valuable distributed snow depth maps for the landscape Davos and the simulation input.
The archive also contains the file: "ReadMeMetadataDataSetPrecipitationScaling" which explains the data structure.

alpine-precipitation

display_name: alpine-precipitation

snow

display_name: snow

snow-cover

display_name: snow-cover

snow-distribution

display_name: snow-distribution

snow-hydrology

display_name: snow-hydrology

en: Precipitation Scaling Data Set (Vögeli et al., Frontiers)


maintainer: Irmi Seidl

en: switzerland energy-cooperatives cooperatives renewable-energy community-energy

en: Codebook

en: Description of variable attributes and valid n

en: Questionnaire with variable names

en: Modified questionnaire with variable names for each item. Should be used together with the data files (.csv or .sav) to reconstruct the data and variable structures.

en: Raw date (SPSS)

en: Raw data in sav. format (SPSS). For comprehension of the data and variable structure, please consult the modified questionnaire with variable names.

en: Raw data (.csv)

en: Raw data in csv. format. For comprehension of the data and variable structure, please consult the codebook and the modified questionnaire with variable names.

en:
 Topic of Survey
The data at hand on energy cooperatives in Switzerland were collected in 2016 as part of the project "Collective financing of renewable energy projects in Switzerland and Germany" of the National Research Programme 71 "Managing Energy Consumption". The cooperatives were surveyed on their organizational structure, their activities in electricity and heat generation, their finances, the political context and their assessments of the future.

 Survey Method
The survey was targeted at all energy cooperatives in Switzerland (this is the basic population). The Swiss Commercial Register was searched for cooperatives and specific keywords in order to determine this basic population and collect addresses. This search in May 2016 resulted in a total of 304 energy cooperatives, to which a questionnaire was sent in July 2016. A pre-test with 8 persons had been carried out before the questionnaire was sent out. The questionnaire was provided in German and French. It was sent by mail and an attached letter referred to a link for the digital version if preferred. The online version was designed with the software "Sawtooth". After three weeks, a first, and after six weeks a second reminder letter was sent to those cooperatives that had not yet completed the questionnaire. The returned hardcopy questionnaires were manually entered into the database and then combined with the electronic data from the online survey. In the course of the survey, the total population was reduced from 304 to 289: in 4 cases the survey was not deliverable, 4 cooperatives had dissolved, 6 were not actually energy cooperatives, 1 case had recently changed its legal form. With a response rate of 47%, the final data set comprises 136 responses (from 77 digital and 59 hardcopy questionnaires). However, not all 136 of the returned questionnaires were filled out completely. We checked for answers that seemed contradictory or incomprehensible. If an error could be clearly identified and the correct answer derived, the answer was adjusted, otherwise the answer was replaced by "missing data".

 Anonymization
Participating cooperatives have been assured that their information will be kept confidential and will only be made public anonymously. For this reason, the data have been anonymized in in order to prevent any identification of individual cooperatives.

 How to Use the Data
* The data are available in CSV and SPSS (sav.) format.
* A codebook and a modified version of the used questionnaire are provided to illustrate the data and variable structure. In the questionnaire, the variable names are assigned to the corresponding questions. In the codebook, further information on these variables (valid n, answer categories) can be found. This information (of the codebook) is already integrated in the SPSS file.

 Current Embargo on Data
These data are currently under embargo and will only be released when the project is completed (not before 2020).

#Additional Information
* The used questionnaire is provided in German and French.
* Descriptive results of the survey were published in a WSL report: https://www.dora.lib4ri.ch/wsl/islandora/object/wsl:18943

community-energy

display_name: community-energy

cooperatives

display_name: cooperatives

energy-cooperatives

display_name: energy-cooperatives

renewable-energy

display_name: renewable-energy

switzerland

display_name: switzerland

educ

en: Education, culture and sport

en: Energy Cooperatives in Switzerland: Survey Results // Energiegenossenschaften in der Schweiz: Befragungsergebnisse


maintainer: Giulia Mazzotti

en: forest-structure snow-distribution snow-modelling snow-energy-balance forest-snow

en: Meteo data to drive FSM2 model

en: Includes meteorological driving data used to run the forest snow model FSM2, processed and parsed in text files that match the format required by FSM2. Separate files are available for each field area (Laret, Drusatscha and Ischlag) and season (2012/13, 2013/14, 2014/15). Each file includes data for the period from October 1st to May 31st at hourly resolution.

en: Grid point nomenclature

en: The grid structure of each forest site and the respective nomenclature applied to label individual points within each grid are outlined here.  Each point marks the location of snow depth measurements and co-located canopy structure parameters.

en: Coordinates data

en: Includes coordinate information of each surveyed point (7 x 276 = 1932 forest points, 2 open areas)

en: Canopy data

en: Includes all canopy structure metrics computed at all surveyed locations

en: Snow depth data open sites

en: Contains all snow detph data accquired at open sites nearby the forest stands during the same period.

en: Snow depth data forest sites

en: Contains all snow depth data acquired at all forest sites during winters 2012/13, 2013714 and 2014/15.

en:
This dataset contains all snow, canopy and meteorological data presented and used in the publication: Mazzotti, G., Essery, R., Moeser, D. & Jonas T. (2020) 'Resolving spatial variability of forest snow using an energy-balance model with a 1-layer canopy'. Water Resources Research, https://doi.org/10.1029/2019WR026129.
This publication must be cited when using this dataset.

forest-snow

display_name: forest-snow

forest-structure

display_name: forest-structure

snow-energy-balance

display_name: snow-energy-balance

snow-modelling

display_name: snow-modelling

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Snow depth, canopy structure and meterorological datasets from the Davos area, Switzerland, Winters 2012/13-2014/15, used for high-resolution forest snow modelling


en: bioenergy switzerland manure biogas review

en: Production de biogaz à partir d’engrais de ferme en Suisse

en: L'objectif de ce livre blanc est de fournir aux décideurs, aux administrations et aux parties prenantes les résultats de recherche les plus récents afin de promouvoir l'utilisation optimale de la bioénergie issue des engrais de ferme dans la transition énergétique suisse. A cette fin, les résultats du centre de compétence suisse pour la recherche en bioénergie - SCCER BIOSWEET - sont résumés et présentés dans un contexte plus large. Si rien d'autre n'est mentionné, les résultats se réfèrent à la Suisse et, dans le cas de la matière première, aux potentiels nationaux de biomasse.

bioenergy

display_name: bioenergy

biogas

display_name: biogas

manure

display_name: manure

review

display_name: review

educ

en: Education, culture and sport


en: geology endemism landscape-evolution madagascar flora

en: Data v1.0

en: used for paper submission only

en: Escarpment evolution drives the diversification of the Madagascar flora

en: This upload contains the data (species checklist, species range maps, time-calibrated phylogenies, topographic change, etc.) generated, analyzed, and presented in the paper .

en: Although much of the endemic biodiversity of Madagascar can be attributed to its isolation as an island in the Indian Ocean, the high rates of speciation throughout its geologic history suggest an influence of local-scale landscape dynamics. The topographic evolution of Madagascar is dominated by the formation of high-relief continental rift escarpment and we argue that the erosion and landward retreat of this topography creates habitat heterogeneity that has served as a speciation pump for the island. The highest plant richness is found along the escarpment and is characterized by steady diversification rates over the last 45 Ma. Modeled landscape evolution by escarpment retreat demonstrates opportunities for allopatric speciation by transient habitat fragmentation through multiple mechanisms, including catchment expansion, isolation of highland remnants and formation of topographic and river barriers The segregation of floral phylogenetic turnover parallel to the escarpment is consistent with these mechanisms and indicates the importance of erosion-driven landscape dynamics on speciation.

endemism

display_name: endemism

flora

display_name: flora

geology

display_name: geology

landscape-evolution

display_name: landscape-evolution

madagascar

display_name: madagascar


en: biomass-dynamics plant-traits climate-change plant-community treeline-ecosystems soil-nutrients

en: Data on soils, tree biomass, plant nutrients, rock mineralogy, climate of treeline ecosystems in Khibiny mountains, Kola Penninsula, Russia

en: Data on soil nutrients and charcteristics, tree and understory biomass, foliage nutrients, mineralogy, soil temperature and moisture along an elevation gradient from boreal forest to mountain tundra in teh Khibiny mountains (Kola Penninsula, Russia). Samples were taken along two gradients at 7 elevation level either under tree canopy (tree) and in open areas (open).

biomass-dynamics

display_name: biomass-dynamics

climate-change

display_name: climate-change

plant-community

display_name: plant-community

plant-traits

display_name: plant-traits

soil-nutrients

display_name: soil-nutrients

treeline-ecosystems

display_name: treeline-ecosystems


maintainer: Franziska Gerber

en: static-data wrf cosmo-wrf landuse topography cryowrf

en: Static data for WRF - Topography

en:
Example GEOGRID.TBL to use with the 1s static data;
Note about naming:
* 121 -> 1-2-1 topography smoothing applied to dataset
* 1 -> one smoothing cycle applied to the data (needs to be changed depending on the chosen resolution to avoid too steep slope angles)

en: Static data for WRF - Soiltype top

en: Static data for WRF - Soiltype bottom

en: Documentation

en: Documentation of the dataset

en: Example namelist.wps to use with the 1s static data

en: Static data for WRF - Landuse

en: Static input data (topography, landuse and soiltype) for the WRF preprocessing system WPS is provided for Switzerland and its neighboring countries between 45-49 N and 4-12 E. The data is provided at a resolution of 1 s. Topography is based on the Aster dataset, while landuse is extracted from the Corine landuse dataset. Soil type is set to silty clay loam for the entire domain. This static input data is valid for WRF and CRYOWRF.

cosmo-wrf

display_name: cosmo-wrf

cryowrf

display_name: cryowrf

landuse

display_name: landuse

static-data

display_name: static-data

topography

display_name: topography

wrf

display_name: wrf

en: High resolution static data for WRF over Switzerland


en: terrestrial-laser-scans antarctica terrestiral-laserscanning gridded-data depth-of-snowfall

en: Scan from 4 January 2019, 1 mm resolution

en: Scan from 2 January 2019, 1 mm resolution

en: Scan from 21 December 2018, 10 cm resolution

en: Scan from 11 January 2019, 1 mm resolution

en: Scan from 4 January 2019, 10 cm resolution

en: Scan from 27 December 2018, 10 cm resolution

en: Deprecated: Scan from 11 January 2019, 10 cm resolution, version 1

en: This resource is deprecated. It contains erroneous data.

en: Scan from 11 January 2019, 10 cm resolution, version 2

en: Scan from 27 December 2018, 1 mm resolution

en: Scan from 21 December 2018, 1 mm resolution

en: Scan from 2 January 2019, 10 cm resolution

en:
Surface topography maps (spatial extent: 400 m x 400 m) obtained at approximately 300 m from the top of the Hammarryggen Ice Rise in Dronning Maud Land, East Antarctica, using a Riegl VZ-6000 Terrestrial Laser Scanner (TLS). Scans were obtained on 5 days in the 2018-2019 Austral summer: on December 21 and 27, and January 2, 4 and 11. By using reflectors installed on bamboo poles, scans were registered with respect to the reflectors, such that the difference between two successive scans reveals the spatial patterns of erosion and deposition of snow. On each scan day, we used multiple scan positions to create one combined point cloud. After applying an octree filter on the point cloud, a 3D surface was obtained. For each day, the dataset contains a 1 mm and a 10 cm octree filter resolution file, only including points in a 400 m x 400 m area centered around the scan positions.

Notes:

* All files in the dataset are in the same coordinate system. However, this coordinate system is arbitrary (i.e., not related to any global coordinate system).

* From the installed reflectors, 4 reflectors could be used over the full period. The scan accuracy is generally higher within the area enclosed by the reflectors.

* The scans from January 2 were found to have exhibited small tilt during the scan and are of lesser accuracy.

* By walking along fixed corridors, disturbance of the snow was limited.

antarctica

display_name: antarctica

depth-of-snowfall

display_name: depth-of-snowfall

gridded-data

display_name: gridded-data

terrestiral-laserscanning

display_name: terrestiral-laserscanning

terrestrial-laser-scans

display_name: terrestrial-laser-scans

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Terrestrial laser scans on Hammarryggen Ice Rise, Dronning Maud Land, East Antarctica


en: water-scarcity water-supply climate-change reservoirs water-demand

en: Water supply

en: Simulated discharge series for a reference period 1981-2010 and till the end of the century. Data are provided for 39 climate model chains and a control run based on the observed meteorology. Data are provided at daily resolution (mm/d).

en: Water demand (deprecated)

en:
Warning: please use the corrected version 2, since this file contains errors for certain categories such as Livestock, Industry or Houshold.

Water demand estimates for the 307 medium-sized catchments for different categories for current and future conditions. One text file is provided per demand category. One column corresponds to one catchment (IDs compare to shapefile), The data are provided at monthly resolution in mm/d and can be converted to volumes by using the catchment area. E.g.
Q[mm/d] * catchment area [m²] /1000 = Q[m³/d]
or to obtain discharge in m³/s
Q[mm/d] * catchment area [m²]/1000/24/3600 = Q [m³/s].
Future irrigation and hydropower water demand are provided per climate model chain.

en: Shapefile of 307 catchments in Switzerland

en: Shapefile of 307 catchments for which estimates of water supply, demand, and reservoir volumes are provided. The OBJECTID entry corresponds to the catchment ID which is used as a reference in the other datasets provided.

en: Reservoir volumes

en: Reservoir volume for the 307 medium-sized catchments for different storage categories: natural lakes, artificial reservoirs, reservoirs for artificial snow production, drinking water reservoirs, and usable volumes of natural lakes. Unit: Mio m³. One column per catchment (see shapefile).

en: Water demand version 2 (corrected version)

en:
The dataset Hydro-CH2018 reservoirs provides estimates of current and future water supply, water demand, and storage volumes for 307 medium-sized catchments in Switzerland.
Water supply for current (1981-2010) and future (2070-2099) climate conditions was simulated using the hydrological model PREVAH. For modeling current water supply, observed meteorological time series were used as input, while simulated meteorological time series derived from 39 model chains of the CH2018 initiative were used as an input for simulating future climate conditions.

Water demand was estimated for six categories:

- 1) Drinking water (households and tourism),
- 2) industry (second and third sector),
- 3) artificial snow production,
- 4) agriculture (irrigation and livestock feeding),
- 5) ecology (residual flows), and
- 6) hydropower.

Future estimates consider changes in demand related to population growth and changes in the hydrological conditions.
Storage volumes are provided for natural lakes (storage capacities and usable volumes), artificial reservoirs, reservoirs for artificial snow production, and drinking reservoirs.

A detailed description of the simulation and estimation procedures can be found in

*  Brunner, M.I., Björnsen Gurung, A., Zappa, M., Zekollari, H., Farinotti, D., Stähli, M., 2019. Present and future water scarcity in Switzerland: Potential for alleviation through reservoirs and lakes. Sci. Total Environ. 666, 1033–1047. https://doi.org/10.1016/j.scitotenv.2019.02.169.

This dataset contains the following information:

1.	Shapefile with the 307 medium-sized Swiss catchments.
2.   Textfiles with the water supply simulations for the control run and the 39 climate model chains (one file per chain) at daily resolution for the 307 catchments.
3.	Textfiles with the current and future demand estimates per category at monthly resolution for the 307 catchments.
4.	Textfiles with the storage volumes per category and catchment.

reservoirs

display_name: reservoirs

water-demand

display_name: water-demand

water-scarcity

display_name: water-scarcity

water-supply

display_name: water-supply

en: Hydro-CH2018 reservoirs


disdrometer-data-gotschnagrat

title_for_slug: disdrometer-data-gotschnagrat

en: visibility disdrometer raclets hydrometeors precipitation

en: Disdrometer Data Gotschnagrat

en: The zip folder contains one netCDF file per day for Gotschnagrat from February 11 to March 27 2019 with a temporal resolution of 30 seconds (time in UTC). The naming convention for the files is Gotschna_YYYYMMDD.nc and the files include the following: characteristics of hydrometeors (e.g. diameter, fall velocity, amount per diameter class,...), precipitation rate, radar reflectivity, visibility range, weather codes and instrument performance.

en: A laser optical disdrometer (Parsivel² , OTT Hydromet) was deployed at Gotschnagrat (LON: 9.849, LAT: 46.859) to measure hydrometeors by extinction when passing a laser beam. The instrument can classify eight different kinds of precipitation, including rain, hail, snow, drizzle, and hybrid forms. The dataset contains information on precipitation amount and type for the period of February 11 to March 27 2019 at Gotschnagrat.

disdrometer

display_name: disdrometer

hydrometeors

display_name: hydrometeors

precipitation

display_name: precipitation

raclets

display_name: raclets

visibility

display_name: visibility


snow-depth-mapping

maintainer: Mauro Marty

title_for_slug: snow-depth-mapping

en: aerial-imagery snow-hydrology snow-water-equivalent snow-depth image-matching avalanche dsm

en: Snow depth map 20150415

media_type: image/tiff

format: TIFF

mimetype: image/tiff

en: Snow depth map 20120320

en: Snow depth map generated from ADS 80 imagery (CIR). GSD of imagery = 0.25 m

en: Snow depth map 20130415

en: Snow depth map 20160126

en:
Snow depth map generated from ADS 100 imagery (CIR). GSD of imagery = 0.16 m
Because of very diffuse light conditions at time of image acquisition the quality of the resulting snow depth values are in some regions quite poor.

en: Snow depth map 20100416

en: Snow depth map 20160309

en: Snow depth map 20140417

en: Snow depth map generated from ADS 100 imagery (CIR). GSD of imagery = 0.18 m

en: Snow depth map 20160420

en:
The available datasets are snow depth maps with a spatial resolution of 2m generated from image matching of ADS 80/100 data. Image acquisition took place at peak of winter (time when the thickest snowpack is expected). The snow depth maps are the difference of a summer DSM from the winter DSM of the corresponding date . The summer DSM used is a product of image matching of ADS 80 data from summer 2013. In the available products buildings, vegetation and outliers were masked (set to NoData).
For the elimination of buildings the TLM layer (swisstopo) was used, because this layer might not represent exactly the
state of infrastructure at time of image acquisition, it is possible that mainly in dense settlement some buildings were not successfully masked. For the relevant area above treeline the masking of buildings showed good results. Vegetation got masked for a height above ground > 1m and was detected in a combination of summer and winter data sets. As Outliers were considered unrealistic snow depths caused by a failure of the image matching algorithm. Snow depths > 15m and smaller than < -15m were classified as outliers. Negative snow depth were kept, because of an uncertainty in image orientation accuracy. It is expected that in regions with negative snow depth also positive snow depth are underestimated by the same amount, which means that an estimation of snow volume should be carried out summing up the absolute values of snow depth (also the negative ones). For volume estimation in small regions the user has to take into account, that orientation accuracy of the images is roughly around 1-2 GSD (30cm), which propagates directly to the snow depth product. Areas which are not covered by snow got assigned a value of 0 as snow depth.

The work is published in:

Bühler, Y.; Marty, M.; Egli, L.; Veitinger, J.; Jonas, T.; Thee, P.; Ginzler, C., (2015). Snow depth mapping in high-alpine catchments using digital photogrammetry. Cryosphere, 9 (1), 229-243. doi: 10.5194/tc-9-229-2015

aerial-imagery

display_name: aerial-imagery

avalanche

display_name: avalanche

dsm

display_name: dsm

image-matching

display_name: image-matching

snow-depth

display_name: snow-depth

snow-hydrology

display_name: snow-hydrology

snow-water-equivalent

display_name: snow-water-equivalent

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: wingtra uav dsm photogrammetry drone-data

en: Data Access

en:
- DSM 10cm resolution
- Orthomosaic 3cm resolution
- Agisoft Metashape Processing Report
- original RGB images

All generated products are also available as a cloud optimized geotiff.

en: We conducted four drone flights in Davos Wolfgang Arelen, in 2020/21 and 2022 to obtain data for the generation of DSMs and orthomosaics at a high resolution. The data was processed with the Agisoft Metashape Professional Software.

drone-data

display_name: drone-data

photogrammetry

display_name: photogrammetry

uav

display_name: uav

wingtra

display_name: wingtra

en: Photogrammetric Drone Data Wolfgang Arelen


en: aerosol clouds backward-trajectories raclets ice-nucleation

en: This dataset contains number concentrations of ice-nucleating particles active at -15 °C observed at Weissfluhjoch during February and March 2019, as well as complementary data (measured aerosol number concentrations and modelled total precipitation along air mass trajectories). This data formed the basis of our paper with the title “Towards parameterising atmospheric concentrations of ice-nucleating particles active at moderate supercooling”.

aerosol

display_name: aerosol

backward-trajectories

display_name: backward-trajectories

clouds

display_name: clouds

ice-nucleation

display_name: ice-nucleation

en: Ice nucleating particle concentrations active at -15 °C at Weissfluhjoch


en: forest species-migration forest-dynamics gui bioclimatic-variables treemig land-use species-interaction forest-model r-package spatial-modelling

en: Description input data

en: Details where the input data come from and how they have been processed

en: TreeMig Simulation Environment and Input Data

en:
The zip file consists of a R-script to provide the framework, an example simulation environment and a set of input data.
- The R-script installAndRunTreeMigWrapperAndGUI.R installs the R-package, links to the input data and starts the graphical user interface.
- The gridded input datasets in TMInputData are specifically tailored to Switzerland and have the same coordinate reference system and a congruent 200m spatial resolution. They consist of climate, topographic, land use and soil data. For details see TMInputDataDetails.pdf.
- TMEnvironment is an example simulation environment, i.e. a set of hierarchically structured folders. For the first example simulation of the tutorial it contains the
  - the TreeMig executables for MacOS, Linux and Windows
  - simulation control files that define the setup and input files of the simulation (in folder C)
  - species parameters (in folder P)
  - bioclimatic data (in folder E)
  - folder R for results
  - folder Plots for plots of the simulation results.
  - This environment can be also used for the subsequent simulations of the tutorial.
- Some additional R-scripts demonstrate more complex applications described in the tutorial, e.g. coupling to another model.

en: Tutorial for using the TreeMig framework; updated

en: TreeMig Tutorial

en:
Starter kit for the TreeMig framework that allows for an easy application of the forest landscape model TreeMig for simulating forest dynamics in space under changing environmental and land use conditions.
The starter kit consists of a set of climate, land-use, topography and soil property input data for Switzerland, a script for installing the framework and running the GUI of the framework with the link to the input data, a tutorial covering a range of simulation examples for Switzerland and a transect through Europe, and an associated example simulation environment containing the model executables and other model inputs.

bioclimatic-variables

display_name: bioclimatic-variables

forest

display_name: forest

forest-dynamics

display_name: forest-dynamics

forest-model

display_name: forest-model

gui

display_name: gui

land-use

display_name: land-use

r-package

display_name: r-package

spatial-modelling

display_name: spatial-modelling

species-interaction

display_name: species-interaction

species-migration

display_name: species-migration

treemig

display_name: treemig

en: Starter Kit for the TreeMig framework v1 for easy simulation of spatio-temporal forest dynamics


en: marine marseille teleo edna mediterraneaen fish-composition

en: Data access

en:
Description: Fish environmental DNA data set collected in 2021 in the Calanques National Park
The eDNA samples were collected in 2021 in two locations (Moyades, M−FPA and “Impérial du large”, I-LPA), during the summer (June to August)and fall (mid-September to November) seasons, with the sampling dates depending on the weather conditions. For the M−FPA, samples were collected between Moyades island and Riou island, while for the I-LPA, they were collected on the south side of the “Impérial du large” island. To take into account the existing bathymetry, in the M−FPA the samples were taken at two sampling sites with depths of 20 and 40 m, while in the I-LPA they were taken at two sites with depths of 20 and 80 m.
At each site, in-situ filtration of seawater was performed using a double-head submersible pump (Subspace, Geneva, Switzerland; nominal flow of ca. 1 L/min) strapped to an underwater scooter with 2 VigiDNA 0.20 µm filtration capsules (SPYGEN, le Bourget du Lac, France), along with disposable sterile tubing. The samples were collected along two horizontal transects (up to 400 m in length) during each closed-circuit rebreather dive, enabling the filtration of a water volume of 15 L/filter per depth, as close as possible to the substrate. Two filter replicates were collected by two divers at each sampling site, except in two cases where bad weather conditions or logistical issues meant that only one replicate was sampled.
After the filtration, the remaining seawater was emptied from the capsule back on the boat and replaced by a 80 mL CL1 conservation buffer (SPYGEN, le Bourget du Lac, France). To prevent any contamination, a strict protocol was followed during the entire process, requiring disposable gloves and single-use filtration equipment. Finally, the samples were stored at room temperature. We followed a strict contamination control protocol in both field and laboratory stages. Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

edna

display_name: edna

fish-composition

display_name: fish-composition

marine

display_name: marine

marseille

display_name: marseille

mediterraneaen

display_name: mediterraneaen

teleo

display_name: teleo

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Environmental DNA Marine France Calanques 2021


en: plant-species photo vascular-plants species-observations testing

en:
Zipped directory containing approximately 5'600 photographs of vascular plants from the Swiss flora, taken at 153 sampling locations. Sampling locations were assigned a TypoCH habitat type.
Folder structure:
 - Each folder represents a plant population, defined by the same species, sampling date, and location.
 - Higher-level directories organize populations observed within the same sampling plot.
Naming convention:
Each image is names img_<index>_<plant organ>.jpg whereby <index> is the number of the photograph within the folder. For each observed population, images have consecutive integers as index. <plant organ> is a single letter indicating the depicted part(s) of the plant:
b = bark
i = inflorescense
f = infructescense
s = several parts
v = vegetative parts

en:
This data set contains roughly 5600 photographs of plants and plant parts from 153 sites recorded in all major biogeographic regions of Switzerland using smartphone cameras. Image names contain a letter referring to depicted plant parts: b = bark, i = inflorescence, f = infructescense, s = several parts, v = vegetative parts.
Photos are grouped in folders by observation (individual or population), i.e., photos in the same folder are of the same species, observed at the same time and sampling plot. At a higher organisational level, these folders are grouped by sampling plot (usually 3×3 m in open areas and 10×10 m in forests). The main folder contains metadata including taxon name, sampling time and location, as well as the TypoCH habitat type encoded as integers.

photo

display_name: photo

plant-species

display_name: plant-species

species-observations

display_name: species-observations

testing

display_name: testing

vascular-plants

display_name: vascular-plants

en: Photos of vegetative and reproductive parts of 560 vascular plant species taken in all biogeographic regions of Switzerland