maintainer: James W. Kirchner

en: arma-noise deconvolution de-mixing irf transfer-function impulse-response-function greens-function system-identification nonlinear-deconvolution time-series-analysis irfnnhsr

en: Impulse Response Function script

en: Benchmark demonstration scripts and results

en: README file for IRFnnhs.R and benchmark demonstration scripts

en:
The R script IRFnnhs.R, which efficiently estimates impulse response functions for environmental systems that are nonlinear, nonstationary, or heterogeneous, based on their input and output time series.

Scripts and results for a series of benchmark tests are also provided, to accompany Kirchner, J.W., Impulse response functions for heterogeneous, nonstationary, and nonlinear systems, estimated by deconvolution and demixing of noisy time series, _Sensors_, 22(9), 3291, https://doi.org/10.3390/s22093291, 2022.

arma-noise

display_name: arma-noise

de-mixing

display_name: de-mixing

deconvolution

display_name: deconvolution

greens-function

display_name: greens-function

impulse-response-function

display_name: impulse-response-function

irf

display_name: irf

irfnnhsr

display_name: irfnnhsr

nonlinear-deconvolution

display_name: nonlinear-deconvolution

system-identification

display_name: system-identification

time-series-analysis

display_name: time-series-analysis

transfer-function

display_name: transfer-function

en: Impulse response functions for nonlinear nonstationary and heterogeneous systems


maintainer: EnviDat Support

en: landslide-early-warning soil-water-content soil-temperature soil-moisture soil-water-matrix-potential

state: active

type: dataset

en: Detailed description of soil moisture measurment sites, soil properties and sensor installations (in German)

media_type: application/pdf

format: PDF

en: In-situ soil moisture measurements, Wasen i.E., flat location, 2019-2023

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, and two additional soil temperature measurements (oC), air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: April 2019-Dec 2023.
Location: flat terrain, meadow
For a detailed description of site, soil and vegetation: see attached document.

format: XLS

en: In-situ soil moisture measurements, Trub, 2021-2023

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, as well as air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: April 2021-Dec 2023.
Location: slope, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Langnau i E, 2021-2023

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each. Meteorological variables, such as air temperature or precipitation can be received from MeteoSwiss.
Time intervall: 1 hour. Measurement period: June 2021-Dec 2023.
Location: flat terrain, meadow (measurement site of MeteoSwiss)
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Ranflüh, 2021-2023

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, as well as air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: April 2021-Dec 2023.
Location: hillslope, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Wasen i.E., steep slope, 2019-2023

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, and two additional soil temperature measurements (oC), air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: April 2019-Dec 2023.
Location: steep hillslope, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Napf, 2021-2023

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each. Meteorological variables such as air temperature or precipitation can be received from MeteoSwiss.
Time intervall: 1 hour.
Measurement period: June 2021-Dec 2023.
Location: flat terrain, meadow (official MeteoSwiss station)
For a detailed description of site, soil and vegetation: see attached document.

en: In the context of landslide early warning research, soil moisture (e.g. volumetric soil water content and soil water potential) has been measured at six locations in the Napf-region (Emmental, central Switzerland) since April 2019. Here, we provide the hourly mean values of all sensors from all 6 locations after a comprehensive data control, filtering and aggregation (from 10-min to 1-hour values). A sub-set of these data (for the locations Wasen i.E.) has previously been published in envidat.ch at https://www.doi.org/10.16904/envidat.369 applying the same data post-processing method. The dataset is complemented with meteorological data (locally measured air temperature and precipitation) as well as soil temperature. A detailed description of the sites and measurement installations can be found in a separate report (attached with the data).

landslide-early-warning

display_name: landslide-early-warning

soil-moisture

display_name: soil-moisture

soil-temperature

display_name: soil-temperature

soil-water-content

display_name: soil-water-content

soil-water-matrix-potential

display_name: soil-water-matrix-potential

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: In-situ soil moisture measurements Napf-region


maintainer: Joan Casanelles Abella

en: urban floral-inventories angiospermae tartu poznan floral-resources antwerp zurich paris plants

en: Floral units, mean number of flowers per floral unit and floral abundance of the different plants counted in quadrats in the study sites in Zurich during the four sampling periods

format: SERVICE

en: List of plant species sampled in the five cities (Antwerp, Paris, Poznan, Tartu and Zurich) during the different sampling perionds (four for Zurich, three for the other cities) with their frequency (oc1-oc16) within a 100 m radius

en: Trait values for the sampled plants

en: Data of a survey of flowering plants in 80 sites in five European cities and urban agglomerations (Antwerp, Belgium; greater Paris, France; Poznan, Poland; Tartu, Estonia; and Zurich, Switzerland) sampled between April and July 2018.

angiospermae

display_name: angiospermae

antwerp

display_name: antwerp

floral-inventories

display_name: floral-inventories

floral-resources

display_name: floral-resources

paris

display_name: paris

plants

display_name: plants

poznan

display_name: poznan

tartu

display_name: tartu

urban

display_name: urban

zurich

display_name: zurich

en: Flowering Plants (Angiospermae) in Urban Green Areas in five European Cities


radiosondes

maintainer: Jörg Wieder

title_for_slug: radiosondes

en: holoballoon pressure wind radiosonde relative-humidity raclets temperature wind-direction

en: Radiosond Template Files

media_type: application/zip

en:
The "template" files contain standard parameters, i.e. ambient pressure (mbar and Pa), temperature (°C), relative humidity (%), wind speed (m s‾ ¹) and wind direction (true deg), as well as additional information, e.g. time (UTC and local time), dew point (°C), mixing ration (g/kg), density (kg m³), altitude (m MSL), height above ground (ft and m AGL), and geographic coordinates (longitude, latitude). If the wind speed was zero, no wind direction is given.
The zip files contain ascents on the following days:
February 10 (morning and afternoon),
February 11 (morning),
February 16 (afternoon),
February 22 (morning),
March 1 (morning),
March 5 (morning),
March 11 (morning),
March 12 (morning),
March 13 (morning),
March 14 (morning),
March 17 (afternoon), and
March 18.
The data was managed with Windsond Receiver Application Demo Version 2.92, (C) Sparv Embedded AB 2016.

format: ZIP

mimetype: application/zip

en: Radiosond Sounding Files

en:
The "soundings" radiosond data contains information on ambient pressure (mbar), temperature (C), relative humidity (%), wind speed (m s‾ ¹) and wind direction (true deg), and are ordered with respect to the height above ground (m AGL) with a step size of 20 m. The first line of each file idicates the geographic location and the start time (in UTC) of the ascent. If the wind speed was zero, no wind direction is given.
The zip files contain ascents on the following days:
February 10 (morning and afternoon),
February 11 (morning),
February 16 (afternoon),
February 22 (morning),
March 1 (morning),
March 5 (morning),
March 11 (morning),
March 12 (morning),
March 13 (morning),
March 14 (morning),
March 17 (afternoon), and
March 18.
The data was managed with Windsond Receiver Application Demo Version 2.92, (C) Sparv Embedded AB 2016.

en: Radiosondes (Windsond, Sparv Embedded AB) were started in Davos Wolfgang (LON: 9.853594, LAT: 46.835577) to report height profiles of pressure, relative humidity and temperature at specific days. In addition to regular launches of radiosondes, sondes were attached to [HoloBalloon](https://www.envidat.ch/group/clouds-in-situ-raclets) to report the ambient conditions of the in-situ measurements. Further profiles of meteorological measures were recorded at [HoloGondel](https://www.envidat.ch/group/clouds-in-situ-raclets) which was installed at the gondola moving between Gotschnaboden and Gotschnagrat at 2285 m a.s.l.

holoballoon

display_name: holoballoon

pressure

display_name: pressure

raclets

display_name: raclets

radiosonde

display_name: radiosonde

relative-humidity

display_name: relative-humidity

temperature

display_name: temperature

wind

display_name: wind

wind-direction

display_name: wind-direction

en: Radiosondes


en: avalanche-accident-statistics avalanche-accidents number-of-caught-persons avalanche-fatalities number-of-dead-persons

en: Fatal avalanche accidents in Switzerland since 1995-1996

media_type: text/csv

format: CSV

mimetype: text/csv

en:
Attention: this data is not updated after 2022 anymore.
This data collection contains information concerning all accidents by snow avalanches causing at least one fatality in Switzerland. The data set commences on 01/10/1995. After the completion of a hydrological year, the new data is added.
The following information is provided:
 * avalanche identifier
 * date of the accident
 * accuracy of the date in range of days before and after
 * canton
 * name of the locality
 * start zone of the avalanche
  * coordinates (Swiss coordinate system, approximately in middle of start zone)
  * accuracy of the coordinates in meters
 * elevation (in meteres above sea level, app. in middle of start zone)
 * slope aspect (main orientation of start zone)
 * slope inclination (in degree, steepest point within start zone)
 * number of dead persons
 * number of caught persons
 * number of fully buried persons
 * forecasted avalanche danger level
 * activity/location of the accident party at the time of the incident

avalanche-accident-statistics

display_name: avalanche-accident-statistics

avalanche-accidents

display_name: avalanche-accidents

avalanche-fatalities

display_name: avalanche-fatalities

number-of-caught-persons

display_name: number-of-caught-persons

number-of-dead-persons

display_name: number-of-dead-persons

educ

en: Education, culture and sport


maintainer: Matthias Haeni

en: relative-humidity precipitation long-term swiss-forest-lab temperature meteorology par meteo wind-speed climate-change

en: Site photo of the field station (ISF)

en: Site photo of the field station from the side.

mimetype: image/jpeg

en: Site photo of the forest station (ISB)

en: Site photo of the forest station from below (viewing upwards the slope).

en: Data plot of the forest station (ISB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

mimetype: application/pdf

en: Site aerial photo (Isone)

en: Site aerial photo from both Isone stations. Source: Google. 2016. Site aerial photo from both Isone stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Data plot of the field station (ISF)

en: Forest station data (ISB)

en: Data file.

en: Field station data (ISF)

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Isone in Switzerland where one station is located within a natural broad-leaved forest stand (ISB) with European beech (_Fagus sylvatica_; 70-100 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, ISF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Isone is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

swiss-forest-lab

display_name: swiss-forest-lab

wind-speed

display_name: wind-speed

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Isone, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


en: uncertainty rain-on-snow climate-change-impact cryosphere snow-water-equivalent natural-climate-variability

en: climate realizations

en: The dataset contains for three variables (snow water equivalent, surface water input and liquid precipitation) 50 realizations of current and future climate periods for two time horizons (mid end end of century), two emission senarions (RCP 4.5 and 8.5) and 10 climate model chains (all EUR11 chains within CH2018). To quantify natural climate variability for projections of snow conditions and resulting rain-on-snow (ROS) flood events, a weather generator was applied to simulate inherently consistent climate variables for multiple realizations of current and future climates at 100 m spatial and hourly temporal resolution over a 12 x 12 km high-altitude study area in the Swiss Alps. The output of the weather generator was used as input for subsequent simulations with an energy balance snow model. The data was extracted in 2021 from original model output.

climate-change-impact

display_name: climate-change-impact

cryosphere

display_name: cryosphere

natural-climate-variability

display_name: natural-climate-variability

rain-on-snow

display_name: rain-on-snow

snow-water-equivalent

display_name: snow-water-equivalent

uncertainty

display_name: uncertainty

educ

en: Education, culture and sport

en: Multiple realizations of daily snow water equivalent, surface water input and liquid precipitation projections for mid- and late-century


maintainer: Michael Lombardo

en: transport pore-water water measurements soil snow

media_type: text/plain

en: Descriptions of the nomenclature, Hydrus files, and videos.

format: TXT

en: Description of the videos

en: The Hydrus files used for the inverse fitting of the hydraulic conductivity.

en: Videos of the capillary rise experiments

en: This dataset consists of data related to capillary rise experiments performed with neutron radiography. There are 4 videos of capillary rise experiments as well as the files used to perform the inverse fitting with Hydrus. The videos show the upward flow of water in glass columns filled with sand and snow or sand, gravel, and snow. The videos show the 2D evolution of the unitless optical density with time. The Hydrus files were used to fit the parameter values of the Mualem-van Genuchten model. The experiments were performed at the Paul Scherrer Institute (PSI) in Villigen, Switzerland.

measurements

display_name: measurements

pore-water

display_name: pore-water

snow

display_name: snow

soil

display_name: soil

transport

display_name: transport

water

display_name: water

en: Capillary rise rise experiments in snow using neutron radiography


maintainer: Marcus Schaub

en: forest diameter-at-breast-height lwf tree-species dbh drought scots-pine crown-condition irrigation swiss-forest-lab tree

en: Shapefile	of measurement location

en: Site photo 1

en: Site photo 3

en: Swiss Forest Health Inventory

media_type: text/html

format: HTML

mimetype: text/html

en: Dataset

en: Site photo 2

en: Long-term Irrigation	Experiment Pfynwald homepage

en: To study the performance of mature Scots pine (_Pinus sylvestris_ L.) under chronic drought conditions in comparison to their immediate physiological response to drought release, a controlled long-term and large-scale irrigation experiment has been set up in 2003. The experiment is located in a xeric mature Scots pine forest in the Pfynwald (46° 18' N, 7° 36' E, 615 m a.s.l.) in one of the driest inner-Alpine valleys of the European Alps, the Valais (mean annual temperature: 9.2°C, annual precipitation sum: 657 mm, both 1961-1990). Tree age is on average 100 years, the top height is 10.8 m and the stand density is 730 stems ha-1 with a basal area of 27.3 m2 ha-1. The forest is described as _Erico Pinetum sylvestris_ and the soil is a shallow pararendzina characterized by low water retention. The experimental site (1.2 ha; 800 trees) is split up into eight plots of 1'000 m2 each. During April-October, irrigation is applied on four randomly selected plots with sprinklers of 1 m height at night using water from an adjacent water channel. The amount of irrigation corresponds to a supplementary rainfall of 700 mm year-1. Trees in the other four plots grow under naturally dry conditions. Soil moisture has been monitored since the beginning of the project at 3 soil depths (10, 20 and 60 cm). The crown condition of each tree is being assessed each year since 2003. Tree measurement data such as diameter at breast height, tree height, and social status were assessed in 2002, 2009 and 2014. The duration of the irrigation experiment is planned for 20 years.

crown-condition

display_name: crown-condition

dbh

display_name: dbh

diameter-at-breast-height

display_name: diameter-at-breast-height

drought

display_name: drought

forest

display_name: forest

irrigation

display_name: irrigation

lwf

display_name: lwf

scots-pine

display_name: scots-pine

tree

display_name: tree

tree-species

display_name: tree-species

en: Tree measurements 2002-2016 from the long-term irrigation experiment Pfynwald, Switzerland


en: antarctica topography landuse cryowrf wrf

en: WPSinput

en: Input files to run the Weather Research and Forecasting model (WRF) preprocessing system WPS with REMA topography and AntarcticaLC2000 landuse data (see Documentation for details).

en: Scripts

en: Scripts to run the preprocessing to produce WRF binary tiles from REMA and AntarcticaLC2000 for topography and landuse (see Documentation for procedure).

en: Documentation

en: Documentation about how the provided dataset was produced including details to reproduce the dataset.

en:
Reference Elevation Model of Antarctica (REMA) topography and AntarcticaLC2000 landuse data
are now available as static data input for the Weather Research and Forecasting model (WRF). Topography
and landuse are made available at a spatial resolution of 1 km. This documentation describes the methods
applied to convert REMA and AntarcticaLC2000 to WRF readable format and shows how this improves
the representation of the Antarctic topography and landuse categories over coastal Antarctic regions.

antarctica

display_name: antarctica

cryowrf

display_name: cryowrf

landuse

display_name: landuse

topography

display_name: topography

wrf

display_name: wrf

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: REMA topography and AntarcticaLC2000 for WRF


en: statistical-model land-use-change land-use urbanization landscape-services modeling switzerland

en: Scripts for Assessing potential landscape service trade-offs driven by urbanization in Switzerland

en:
Scripts ordered by their main purpose within sequential folders in this ReadMe marked with

Within the folders the capital letters refer to the parallel or sequential use of the scripts; scripts here in ReadMe are marked with

 00_Function Scripts
 Functions.r
Script containing several functions for analyzing statistical models: cohen.kappa, meva.table, D2, max-Tss, plot-TSS

 Service_functions.R
Script containing functions for calculating all services and returning sums (and median for bd and rec) as well as rasters

 01_Data Preparation
 A_AS_raster_preparation.R
Preparation of the land use rasters for the years 1985, 1997, and 2009 based on the original Arealstatistik (AS/ASCH); Assigning our categories and assining new values to all "construction sites" for calibrating the models
For model projection starting point (2009) and for service calculations (all ASCH years) the "other" categories were assigned to the land use categories based on dominant neighbor, so that there were no empty cells
Creation of water & mountainous area raster that stayed stable throughout the projections
Creation of MFH raster (2009), to have as base for all new projection years, as this category never becames any other

 B_Factors_preparation.R
Preparation of the factor rasters that were used to calculate service values per cell (see Table 2): LWfactor, Transportation, Vol, Rivers, Lakes, slope, TWW, Hazard_risk

 B_Predictors_preparation.R
Preparation of the raster of the predictors used for calibrating (ASCH years) and projecting (stable) the transition models that do not depend on the land use categories: Temperature (ASCH years), solar radiation (stable), Public transportation access (stable), Elevation (stable), Workers density (ASCH years), Population change (ASCH transitions)

 B_Regions_preparation.R
Preparation of bioregions as raster to be used to mask asxxxx later to calculated services and land use area just for one region

 C_Pred_proj.R
Projecting the dynamic predictors into the future for projecting the land use transitions with the model: Linear extrapolations for workers densities and population; more detailed extrapolation of temperature (based on data for all stations that matched between the temp table we used for the calibration period and the projections from CS2M, and then making a spatial interpolation for all years based on the interpolation of temperature for all years per station)

 02_Model calibration
 A_Bioreg_pred_corr.R
Calculating correlation between the predictors for each bioregion and land use category, Output are those with too high correlation so that one predictor can be removed from transitions were both predictors occur

 A_trans_numbers_bioreg.R
Calculate transition numbers for each bioregion to decide which transitions to primarily consider

 B_Bioreg_ext_eval.R
Calculating TSS based on the external evaluation for the bioregion transitions that happened often enough to try to model them (calibration data: 85-97, evaluation data: 97-09)

 B_Bioreg_int_eval.R
Calculating TSS based on the internal evaluation for the bioregion transitions that happened often enough to try to model them (calibration data: 70%, evaluation data: 30%)

 C_Bioreg_TSS_analysis.R
Extracting TSS numbers from internal and external evaluation, calculating mean and median for each transition for each region for each evaluation method and saving as csv per region to be able to select only the transitions with high enough model performance

 D_Bioreg_Models_for_prediction.R
Calibration of the models that were then used to project land use transitions into the future; calibrated separately for each bioregion

 E_Residuals_trans_models.R
Calculation of Moran's I statistics to analyze the residuals of the land use transition models

 03_Projections
 A_Bioreg_Projections_run.R
Master script for: Extrapolaitng into the future with the regional models and then assembling for each time step to calculate new AS predictors; Several Outputs: txt file to test for NAs in Predictors, txt file with random seed number for sampling, txt file with times for calculation steps (check progress of script while running), csv sheet with projected transition frequencies, tif-rasters for every region and time step, pdf with raster plot for every region and time step

 04_Service calculation
 A_Bioreg_as_services.R
Calculate services per bioregion for years 1985, 1997, 2009

 A_Service_calculation_bioregions.R
Extracting service numbers(sums) per bioregions for all projection runs and storing them in a list of matrixes to be available for further plotting; can be run for swiss wide projections or regional ones

 05_Analysis
 A_Bioreg_ASCH_development.R
Extracting the occurrence of each category per region for all runs (first part), then for ASCH years, and then plotting them nicely; only works for regional projections

 A_Bioreg_Predictors_importanceD2.R
Calculating D2 for each transition and each considered predictor from bivariate models to get value of importance

 B_Bioreg_Pred_imp_analysis.R
Using calculated D2 to sort Predictors according to their importance for each transition

 A_Bioreg_Spatial_results_analysis.R
Plotting randomly sampled runs for ASCH and services to analyses their spatial development

 A_Bioreg_Transition_numbers_check_v1.R
Analyzing the frequency for all transitions for all regions and producing the point plots for each transition separately

 A_Bioreg_Transition_numbers_check_v2.R
Analyzing percentage and numbers of all transitions but plotting them per region and originating ASCH category

 B_Transition_Analysis.R
Further Analysis of transition numbers

 A_Service_analysis.R
Plotting of the service development for bioregions in several ways for analyzing

en: Data for Assessing potential landscape service trade-offs driven by urbanization in Switzerland

en:
The provided folder structure follows the set up of the scripts.
Data is only provided when it has been fully produced by us, otherwise dummies are given.
For data that will be produced by one of the scripts, no dummies are given.
The folders may contain sub-folders, which would be filled if the scripts were all run

 00_Analysis_Data
Data produced throughout the process of the calibration and projection that is later needed for analysis

 01_Raw_Data
Primary data from external sources that were used to compile the rasters and numbers used during the calibration and projection of landscape transitions as well as service calculation

 02_Prepared_Data
Data that will be prepared for further use by scripts are put in here
Additionally it contains the parameter sheets for the transition predictors that we compiled

 03_Model_Data
 Model outputs
Folder were the projection models statistics will be saved
 Models
Folder into which the actual transition models will be saved
 Residuals
Folder into which data on models residuals will be saved for future use

 04_Projected_Data
The output of the projections will be saved into this folder

 05_Service_Data
Any service calculations will be saved in here

 06_Results_Analysis
Any Analysis plots and tables as well as intermediate data will be saved here in the respective sub-folder

en:
Data and scripts of publication:

Madleina Gerecke, Oskar Hagen, Janine Bolliger, Anna M. Hersperger, Felix Kienast, Bronwyn Price, Loïc Pellissier (2019) Assessing potential landscape service trade-offs driven by urbanization in Switzerland. Palgrave communications.

Contains land use projections for Switzerland and scripts and data for these projections as well as the calculation of landscape services.

Data Folder:
Contains sub-folder with the data necessary for this study (provided were no copyright issues, otherwise placeholders with descriptions), and folders where produced data may be stored

Scripts Folder:
Contains scripts organized into subfolders depending on their purpose

Note: Some abbreviations within the scripts and data are derived from German words and not English.

land-use

display_name: land-use

land-use-change

display_name: land-use-change

landscape-services

display_name: landscape-services

modeling

display_name: modeling

statistical-model

display_name: statistical-model

switzerland

display_name: switzerland

urbanization

display_name: urbanization

en: Land use projections and services for Switzerland


en: artificial-lighting alan ecosystem-services sustainability outdoor-lighting

en: R code for NMDS of ground-dwelling arthropods

format: OCTET

en: Raw data for ground-dwelling arthropod NMDS analysis

en: Raw data Moran's I test

en: Raw data for ground-dwelling arthropod analysis

en: Raw data for flying insects NMDS analysis

en: R code for PERMANOVA Analysis of ground-dwelling arthropods.

en: R code of flight-active and ground-dwelling arthropod combined analysis.

en: Raw data for flying insects and ground-dwelling arthropod combined analysis

en: R code for NMDS of flight-active insects

en: R code for PERMANOVA Analysis of flight-active insects.

en: R code of ground-dwelling arthropod analysis.

en: Raw data for flying insects analysis

en: R code of flight-active insects analysis.

en: Raw data and R Code to do all the analysis performed for the paper "Advancing sustainable LED solutions to mitigate light-pollution impacts on arthropods". Including data for both flight-active insects and ground-dwelling arthropods combined (PT_TRF_all.csv), flight-active insects alone (ALANeX_PT_all_clean_control.csv) and ground-dwelling insects alone (ALANeX_TRF_all_clean_control.csv). For the NMDS analysis, there is a data set for the flight-active insects (ALANeX_PT_NMDS.csv) and the ground-dwelling arthropods (ALANeX_TRF_NMDS.csv). For the Morans I use the 'ALANeX_MoransI.csv' dataset.

alan

display_name: alan

artificial-lighting

display_name: artificial-lighting

ecosystem-services

display_name: ecosystem-services

outdoor-lighting

display_name: outdoor-lighting

sustainability

display_name: sustainability


en: digital-zoning-plans spatial-planning land-use-change land-use-transformations land-use-simulations

en: Legend simulated maps

en:
Table of Content: 1. General context of the data set "LUSzoning”; 2. Background and aims of the study using the data set LUSzoning; 3. The data set LUSzoning.
1. General context of the data set "LUSzoning".
The data set "LUSzoning" stands for Land-use simulations integrating zoning regulations in Spanish functional urban areas. The data set has been generated as part of the CONCUR research project (https://www.wsl.ch/en/projects/concur.html) led by Dr. Anna M. Hersperger and funded by the Swiss National Science Foundation (ERC TBS Consolidator Grant (ID: BSCGIO 157789) for the period 2016-2021. The CONCUR research project is interdisciplinary and aims to develop a scientific basis for adequately integrating spatial policies (in this case, digital zoning plans) into quantitative land-change modelling approaches at the urban regional level.
2.	Background and aims of the study using the data set “LUSzoning”.
As part of the CONCUR project, a specific task was to integrate planning spatial policies in land-change modelling. Planning can be implemented in modelling using either hard or gradual restrictions. Different studies have addressed the inclusion of spatial planning policies in land-use change modelling. However, the integration of zoning constraints is generally established as hard or Boolean-based restrictions (e.g., whether urban development is allowed or not), while not accounting for the spatial heterogeneity or gradual characteristics within planning zones (e.g., whether planning regulations allow low, medium or high urban density), though these could improve real patterns simulations in urban areas. We assume Spanish General Zoning plans were suitable to explore the integration of planning into land-change modelling as soft constrains because they define land-use intensities in the buildable zoning areas. In light of the above considerations, the overall aim of the study was to model urban land-use changes using a multi-scenario approach that integrates digitized zoning plans for the Functional Urban Areas (FUAs) of Madrid, Barcelona, Valencia, and Zaragoza. The following specific objectives were addressed: i) to analyse the role of planning by defining three future scenarios that integrate digitized zoning plans and one scenario that assumes almost no planning intervention; ii) to introduce zoning constraints that reflect different degrees of urban densities; iii) to generate a transferable spatially-explicit modelling framework to integrate planning into land-use change simulations.
Four future land-use demands scenarios were defined for the FUAs. Storylines were created considering probable development scenarios related to zoning plans, current Spanish legislation and sustainability goals defined along two axes: a high market-oriented vs. high planning-intervention axis, and an axis of short-term economic growth vs. long-term sustainable growth. The sustainable development scenario (S1) is characterized by low gross floor area (GFA) growth that is limited to areas that are currently under development according to zoning plans. The business-as-usual scenario (S2) is characterized by medium GFA growth in the range of on-going trends. The strong development scenario (S3) is characterized by high GFA growth rates. Growth is restricted to buildable areas without urbanization project designated in zoning plans. The unrestricted development scenario (S4) prioritizes a high degree of market liberalization characterized by high GFA growth that surpasses population demands. S4 follows a rapid economic growth pattern with almost no planning intervention.
3.	 The data set “LUSzoning”.
The dataset includes 16 .asc raster layers providing the simulated land-uses under four defined scenarios for Barcelona, Madrid, Valencia and Zaragoza Functional Urban Areas (FUAs) for 2030. The simulated raster layers were created using CLUMondo simulation framework and have a spatial resolution of 30m. The .asc layers name include the name of the FUA and scenario number. For example, the output from simulating the urban growth for the city of Zaragoza under Scenario 2 is named “Zaragoza_S2.tif”. Furthermore, a .txt file named “Legend.txt” includes the numeric value of the land-use and the category of land-use that represents to interpret the .asc raster layers. The name of the land-use classes is a reclassification of the Urban Atlas 2012 land-use classes within the four Spanish FUAs analyzed.

digital-zoning-plans

display_name: digital-zoning-plans

land-use-simulations

display_name: land-use-simulations

land-use-transformations

display_name: land-use-transformations

spatial-planning

display_name: spatial-planning

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: LUSzoning: Land-use simulations integrating zoning regulations in Spanish functional urban areas


weather-station-davos-wolfgang

title_for_slug: weather-station-davos-wolfgang

en: raclets temperature pressure weather relative-humidity

en: Weather Station Davos Wolfgang

en: The data file contains date and time (YYYY-MM-DD hh:mm:ss) in UTC, temperature (°C), relative humidity (%), pressure (hPa) at 10 m above ground and above sea level. The data was averaged over 10 minutes.

en: The dataset contains weather parameters measured at Davos Wolfgang (LON: 9.853594, LAT: 46.835577).

pressure

display_name: pressure

raclets

display_name: raclets

relative-humidity

display_name: relative-humidity

temperature

display_name: temperature

weather

display_name: weather


maintainer: Chunhong Zhao

en: austin urban-morphology landscape land-dynamics land-use

en: Land use dynamics in Austin since 1992

en: The present dataset is part of the published scientific paper Zhao C, Weng Q, Hersperger A M. Characterizing the 3-D urban morphology transformation to understand urban-form dynamics: a case study of Austin, Texas, USA. Landscape and urban planning, 2020, 203:103881. The overall objective of this paper is to understand urban form dynamics in the Austin metropolitan area for the periods 2006–2011 and 2011–2016. The study also aims to understand to what extent the changes in the built environment (in terms of ‘efficient growth’ versus ‘inefficient growth’) from the 1990s to 2016 in the Austin metropolitan area corresponded with ‘compact and efficient growth’ planning policy documents. The UMT distribution can be found in the paper. The area of transitioning UMT was provided in Table 2 and Table 3 can be found in the Appendix of the paper. A protocol was developed to perform the content analysis of the strategic plans and gather the data. The detailed list of protocol items can be found in Appendix B of the paper. This study demonstrates the advantage of applying Lidar data to characterize 3-D urban morphology type (UMT) transition and understand its dynamics, which helps develop a comprehensive understanding of the urbanization process and provides a tool for planning intentions and policies evaluation on urban development over time. The UMT maps can be found in Appendix A of the paper. The Lidar point datasets and the 30 × 30 m National Land Cover Database (NLCD) are the two main data sources of UMT mapping. Lidar datasets were gathered from different projects that had been conducted and collected by state agencies and other organizations between 2007 and 2017. Table A1 in the appendix in the paper shows the accuracies and acquisition parameters of the Lidar projects from 2007 to 2017. Land use/cover dynamics in Austin metropolitan area dataset provides Land use/cover patterns in the years 1992, 2001, 2004, 2006, 2008, 2011, 2013, 2016 with a spatial resolution of 30 meters. Since NLCD 1992 used a different classification system for the urban land classes, we first reclassified the NLCD 1992 using a customized Arcpy package.

austin

display_name: austin

land-dynamics

display_name: land-dynamics

land-use

display_name: land-use

landscape

display_name: landscape

urban-morphology

display_name: urban-morphology

en: Land use/cover dynamics in Austin metropolitan area since 1992


maintainer: Anita Risch

en: invertebrates exclusion ecosystem-functions grazing ecosystem-multifunctionality vertebrates grassland swiss-national-park ecosystem-coupling subalpine

en: Datafile

en:
ID: Plot ID composited of Fence & Treatment number (90 plots total)

Grassland: Name of the six subalpine grasslands where the exclosure setups were erected. In large grasslands (GRIM, MING, STAB), we established four hierarchical exclosure setups (two in short- and two in tall-grass vegetation), whereas in the small grasslands (BOTS, DADA, MARG) only one setup was erected per vegetation type. BOTS = Val dal Botsch, GRIM = Grimmels, MING = Val Mingér, STAB = Alp Stabelchod, DADA = Stabelchod da daint, MARG = Margunet

Fence: Number of exclosure setup (1 - 18). Note that uneven numbers (1,3,5,7,9,11,13,15,17) represent setups established on short-grass vegetation, even numbers (2,4,6,8,10,12,14,16,18) setups established in tall-grass vegetation
Vegetation	Vegetation type, 1 = short-grass vegetation, 2 = tall-grass vegetation; (9 replicate fences on each vegetation type)
Treatment	Progressive animal exclusion, numbers indicate which animals had access to the plot: 1 = Large/medium/small mammals, and invertebrates have access ("L/M/S/I"), 2 = Medium/small mammals, and invertebrates have access (“M/S/I”), 3 = Small mammals and invertebrates have access (“S/I”), 4 = Invertebrates have access (“I”), 5 = No animals have access (“None”)

Bulkden:	Fine fraction soil bulk density (g cm-3)

Soil.moist	: Soil moisture (%)

Soil.org.C: Rhizosphere soil C content (%)

pH: Soil pH

Nema.PC1: First principal component (PC1) of principal component analysis (PCA) of the soil nematode community composition

Nema.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil nematode community composition

Micro.PC1: 	First principal component (PC1) of principal component analysis (PCA) of the soil microbial community composition

Micro.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil microbial community composition

Abv.Inv.PC1: First principal component (PC1) of principal component analysis (PCA) of the aboveground-dwelling invertebrate community composition

Abv.Inv.PC2: Second principal component (PC2) of principal component analysis (PCA) of the aboveground-dwelling invertebrate community composition

Arthr.PC1: First principal component (PC1) of principal component analysis (PCA) of the soil arthropod community composition

Arthr.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil arthropod community composition

Plant.PC1: First principal component (PC1) of principal component analysis (PCA) of the plant community composition

Plant.PC2: Second principal component (PC2) of principal component analysis (PCA) of the plant community composition

Root.biomass: Root biomass (g m-2)

Micro.biomass	: Microbial biomass carbon (mg kg-1)

Plant.richness: Plant species richness

Plant.N: Plant tissue nitrogen content (%)

Soil.N.min: Soil net nitrogen mineralisation (kg ha-1 season)

Soil.resp: Soil carbon dioxide emissions (soil respiration; g m-2 h-1)

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:
 > Risch AC, Ochoa-Hueso R, van der Putten WH, Bump JK, Busse MD, Frey B, Gwiazdowicz DJ, Page-Dumroese DS, Vandegehuchte ML, Zimmermann S, Schütz M. Size-dependent loss of aboveground animals differentially affects grassland ecosystem coupling and functions. 2018. Nature Communications 9: 3684. [doi: 10.1038/s41467-018-06105-4](https://doi.org/10.1038/s41467-018-06105-4).

Please cite this paper together with the citation for the datafile.

#Methods
Study sites
The experimental exclosure setups were installed within the SNP (IUCN category Ia preserve; Dudley 2008), in south-eastern Switzerland. The park covers 172 km2 of forests and subalpine and alpine grasslands along with scattered rock outcrops and scree slopes. The entire area has been protected from human impact (no hunting, fishing, camping or off-trail hiking) since 1914. Large, fairly homogenous patches of short- and tall-grass vegetation, which originate from different historical management and grazing regimes, cover the park’s subalpine grasslands entirely. Short-grass vegetation developed in areas where cattle used to rest (nutrient input) prior to the park’s foundation (14th century to 1914) (Schütz and others 2003, 2006) and is dominated by lawn grass species such as Festuca rubra L., Briza media L. and Agrostis capillaris L. (Schütz and others 2003, 2006). Today, this vegetation type is intensively grazed by diverse vertebrate and invertebrate communities that inhabit the park and consume up to 60% of the available biomass (Risch and others 2013). Tall-grass vegetation developed where cattle formerly grazed, but did not rest, and is dominated by rather nutrient-poor tussocks of Carex sempervirens Vill. and Nardus stricta L. (Schütz and others 2003, 2006). This vegetation type receives considerably less grazing, with only roughly 20% of the biomass consumed (Risch and others 2013). Consequently, the two vegetation types together represent a long-term trajectory of changes in grazing regimes. Underlying bedrock of all grasslands is dolomite, which renders these grasslands rather poor in nutrients regardless of former and current land-use regimes.
Experimental design
To progressively exclude aboveground vertebrate and invertebrate animals, we established 18 size-selective exclosure setups (nine in short-grass, nine in tall-grass vegetation) distributed over six subalpine grasslands across the SNP (Risch and others 2013, 2015). Elevation differences of exclosure locations did not exceed 350 m (between 1975 and 2300 m a.s.l.). The exclosures were established immediately after snowmelt in spring 2009 and were left in place for five consecutive growing seasons (until end of 2013). They were, however, temporarily dismantled every fall (late October after first snowfall) to protect them from avalanches. They were re-established in the same location every spring immediately after snowmelt. Each size-selective exclosure setup consisted of five plots (2 x 3 m) that progressively excluded aboveground vertebrates and invertebrates from large to small. The plots are labelled according to the guilds that had access to them “L/M/S/I”, “M/S/I”, “S/I”, “I”, “None”; L = large mammals, M = medium mammals, S = small mammals, I = invertebrates, None = no animals had access. As we only had permission to have the experimental setup in place for five consecutive growing seasons, the experiment had to be completely dismantled in the late fall of 2013 and all material removed from the SNP.
Our exclosure design was aimed at excluding mammalian herbivores, but naturally also excluded the few medium and small mammalian predators, as well as the entire aboveground invertebrate food web. A total of 26 large to small mammal species can be found in the SNP, but large apex predators are missing (wolf, bear, lynx) . Reptiles, amphibians and birds are scarce to absent in the subalpine grasslands under study. Only two reptile species occur in the park and they are confined to rocky areas that warm up enough for them to survive. One frog species spawns in an isolated pond far from our grasslands. Only three bird species occasionally feed on the subalpine grasslands. Using game cameras (Moultrie 6MP Game Spy I-60 Infrared Digital Game Camera, Moultrie Feeders, Alabaster, AL, USA), we did observe that the medium- and small-sized mammals (marmot/hares and mice) were not afraid to enter the fences and feed on their designated plots. We never spotted reptiles, amphibians or birds on camera. We distinguished between 59 higher aboveground-dwelling invertebrate taxa that our size-selective exclosures excluded (see also methods for aboveground-dwelling invertebrates below).
The “L/M/S/I” plot (not fenced) was located at least 5 m from the 2.1 m tall and 7 x 9 m large main electrical fence that enclosed the other four plots. The bottom wire of this fence was mounted at 0.5 m height and was not electrified to enable safe access for medium and small mammals, while fencing out the large ones. Within each main fence, we randomly established four 2 x 3 m plots separated by 1-m wide walkways from one another and from the main fence line: 1) the “M/S/I” plots were unfenced, allowing access to all but the large mammals; 2) the “S/I” plots (10 x 10 cm electrical mesh fence) excluded all medium-sized mammals. Note that the bottom 10 cm of this fence remained non-electrified to enable safe access for small mammals; 3) the “I” plots (2 x 2 cm metal mesh fence) excluded all mammals. We double-folded the mesh at the bottom 50 cm to reduce the mesh size to smaller than 1 x 1 cm openings; and 4) the “None” plots were surrounded by a 1 m tall mosquito net (1.5 x 2 mm) to exclude all animals. The top of the plot was covered with a mosquito-meshed wooden frame mounted to the corner posts (roof). We treated these plots a few times with biocompatible insecticide (Clean kill original, Eco Belle GmbH, Waldshut-Tiengen, Germany) to remove insects that might have entered during data collection or that hatched from the soil, but amounts were negligible and did not impact soil moisture conditions within these plots.
To assess whether the design of the “None” exclosure (mesh and roof) affected the response variables within the plots and, therefore, influenced the results, we established an additional six “micro-climate control” exclosures (one in each of the six grasslands) (Risch and others 2013, 2015). These exclosures were built as the “None” exclosures but were open at the bottom (20 cm) of the 3-m side of the fence facing away from the prevailing wind direction to allow invertebrates to enter. A 20-cm high and 3-m long strip of metal mesh was used to block access to small mammals. Thus, this construction allowed a comparable micro-climate to the “None” plots, but also a comparable feeding pressure by invertebrates to the “I” plots. We compared various properties within these exclosures against one another to assess if our construction altered the conditions in the “None” plots. We showed that differences in plant (e.g., vegetation height, aboveground biomass) and soil properties (e.g., soil temperature, moisture) found between the “I” and the “None” treatments were not due to the construction of the “None” exclosure, but a function of animal exclusions, although the amount of UV light reaching the plant canopy was significantly reduced (Risch and others 2013).
Aboveground invertebrate sampling
Aboveground invertebrates were sampled with two different methods to capture both ground- and plant-dwelling organisms: 1) we randomly placed two pitfall traps (67 mm in diameter, covered with a roof) filled with 20% propylene glycol in one 1 x 1 m subplot of the 2 x 3 m treatment plots in spring 2013 (May) and emptied them every two weeks until late September 2013 (Vandegehuchte and others 2017b, 2018). A pitfall trap consisted of a plastic cylinder (13 cm depth, 6.75 cm diameter). Within each cylinder we placed a 100 ml plastic vial with outer diameter 6.70 cm and on top of the cylinder we placed a plastic funnel to guide the invertebrates into the vials. Each trap was cover with a cone-shaped and transparent plastic roof to protect the trap from rain (Vandegehuchte and others 2017b, 2018). Note that in the “None” plots only one trap was placed as control to check for effectiveness of the exclosure. 2) We vacuumed all invertebrates from a 60 x 60 cm area on another 1 x 1 m subplot with a suction sampler (Vortis, Burkhard manufacturing CO, Ltd., Rickmansworth, Hertfordshire, UK) every month from June to September 2013 (Vandegehuchte and others 2017b, 2018). For this purpose, we quickly placed a square plastic frame (60 x 60 x 40 cm) with a closable mosquito mesh sleeve attached to the top edge into the plot from the outside. The suction sample was then inserted into through the sleeve and operated for 45 s to collect the invertebrates (Vandegehuchte and others 2017b, 2018).
We sorted the ≈100 000 individuals collected with both methods by hand and identified each individual morphologically to the lowest taxonomic level feasible (59 taxa, including orders, suborders, subfamilies, families; phylum for Mollusca). These taxa belonged to the following feeding types: 19 herbivores, 16 detritivores, 9 predators, 8 mixed feeders, 5 omnivores and 2 non-classified feeders (or not feeding as adults) (Vandegehuchte and others 2017b). We summed the numbers from the two pitfall traps and the suction sampling over the course of the 2013 season to represent the aboveground invertebrate abundance and community composition of a plot. Note: we did not specifically attempt to catch flying invertebrates with e.g., sticky traps, thus a few flying insects may have been missed with our vacuum sampling approach.
Sampling of plant properties
The vascular plant species composition was assessed at peak biomass every summer (July) by estimating the frequency of occurrence of each species with the pin count method in each plot (Frank and McNaughton 1990). A total of 172 taxa occurred within our 90 plots and we calculated plant species richness for each plot separately. We used the 2013 data in this study. Plant quality was assessed every year in July and September; here we use plant quality at the end of the experiment (September 2013). Two 10 x 100 cm wide strips of vegetation per plot were clipped, combined, dried at 65°C, and ground (Pulverisette 16, Fritsch, Idar-Oberstein, Germany) to pass through a 0.5 mm sieve. Twenty randomly selected samples across all treatments were analysed for N (Leco TruSpec Analyser, Leco, St. Joseph, Michigan, USA) (Vandegehuchte and others 2015). Nitrogen concentrations of the other samples were then estimated from models established for the experiment and the entire SNP relating Fourier transform-near infrared reflectance (FT-NIR) spectra to the measured values of N using a multi-purpose FT-NIR spectrometer (Bruker Optics, Fällanden, Switzerland) (Vandegehuchte and others 2015). Root biomass was sampled every fall by collecting five 2.2 cm diameter x 10 cm deep soil samples (Giddings Machine Company, Windsor, CO, USA) per plot (450 samples year-1). The samples were dried at 30 °C and roots were sorted from the sample by hand. We sorted each sample for 1 h which allowed to retrieve over 90% of all roots present in the samples (Risch and others 2013). The roots were then dried at 65 °C for 48 and weighed to the nearest mg. We averaged the values per plot and used the 2013 data only in this study.
Sampling of edaphic communities
In 2009, 2010, and 2011 we collected three composited soil samples (5 cm diameter x 10 cm depth; AMS Samplers, American Falls, ID, USA) and assessed bacterial community structure using T-RFLP profiling (Liu and others 1997; Blackwood and others 2003; Hodel and others 2014). We detected a total of 89 operational taxonomic units (OTUs). These values are in accordance with other studies reporting OTU richness (Wirthner and others 2011; Zumsteg and others 2012; Meola and others 2014) using T-RFLP profiling, a method that detects the most abundant, and thus likely, the most relevant, taxa. We averaged the data over the three years of collections for our calculations. Microbial biomass carbon (MBC) was determined with the substrate-induced method (Anderson and Domsch 1978) every fall (September) between 2009 and 2013 by collecting three mineral soil samples (5 cm diameter × 10 cm mineral soil core, AMS Samplers, American Falls, ID, USA). The three samples were combined (90 samples for each sampling year), immediately put on ice, taken to the laboratory, passed through a 2-mm sieve and stored at 4°C. Again, we only used the 2013 data in this study.
Soil samples (5 cm diameter x 10 cm depth) to extract soil arthropods were collected in June, July, and August 2011 with a soil corer lined with a plastic sleeve to ensure an undisturbed sample (total of 270 samples). The plastic line core was immediately sealed on both ends using cling film and put into a cooler. All plots were sampled within three days and the extraction of arthropods started the evening of the sampling day using a high-gradient Tullgren funnel apparatus (Crossley and Blair 1991; Vandegehuchte and others 2015). Samples were kept in the extractor for four days and the soil arthropods were collected in 95% ethanol. All individuals were counted and each individual was identified morphologically to the lowest level feasible [76 taxa, including orders, suborders, subfamilies, families (Protura, Thysanoptera, Aphidina, Psylina, Coleoptera, Brachycera, Nematocera, Auchenorryncha, Heteroptera, Formicidae); sub-phylum for Myriapoda, for Acari and Collembola also including morpho-species). Note that we also included larval stages (nine of the 76 taxa) (Vandegehuchte and others 2015). All data were summed over the season. A detailed species list for mites and collembolans is published (Vandegehuchte and others 2017a) [https://doi.org/10.1371/journal.pone.0118679.s001]. Earthworms are rare in the SNP and therefore were not included. We collected eight random 2.2 cm diameter x 10 cm deep soil cores from each plot in September 2013 to determine the soil nematode community composition. The samples were mixed and the nematodes were extracted from 100 ml of fresh soil using Oostenbrink elutriators (Oostenbrink 1960). All nematodes in a 1 ml of the 10 ml extract were counted, a minimum of 150 individuals sample-1 were identified to genus or family level using (Bongers 1988), the numbers of all nematodes were extrapolated to the entire sample and expressed for a 100 g dry sample. In total we identified 63 genus or family levels (Vandegehuchte and others 2015). The list of all the nematodes found is published (Vandegehuchte and others 2015) [http://www.oikosjournal.org/appendix/oik-03341] or DOI: [doi: 10.1111/oik.03341].
We are aware that sampling soil microbes from 2009 to 2011 and soil arthropods in 2011 was not ideal, but we are positive that this does not bias the results. Most of the parameters measured in our experiment either already showed a treatment response after the first growing season (e.g., plant biomass) or did not respond over the entire time experiment (e.g., microbial biomass C). The microbial community composition (2009 – 2011) was highly influenced by inter-annual differences in temperature and precipitation, but did not differ between treatments or vegetation types (Hodel and others 2014). We therefore felt comfortable using the 2009 through 2011 data for describing the soil microbial community in our experimental treatments. Similarly, we are positive that our soil arthropod data are representative. We did assess soil arthropods in August 2012 and found no differences to the August 2011 data. However, we did not feel comfortable combining the 2011 June, July, August data with only August data for 2012 for our analyses.
Sampling of soil properties
We collected three soil samples (5 cm diameter x 10 cm depth) in each plot in September 2013 after removing the vegetation. First, we collected the top layer of mineral soil rich in organic matter, the surface organic layer or rhizosphere, typically 1 to 3 cm in depth with a soil corer (AMS Samples, American Falls, Idaho, USA). Second, we collected a 10 cm mineral soil core beneath this surface layer. The cores for each layer were composited, dried at 65 °C for 48 h and fine-ground to pass a 0.5 mm screen. We then analysed all samples for total C using a Leco TruSpec Analyser (Leco, St. Joseph, Michigan, USA). Mineral soil pH was measured potentiometrically in 1:2 soil:CaCl2 solution with an equilibration time of 30 min.
Soil net N mineralisation was assessed during the 2013 growing season (Risch and others 2015). For this purpose, we randomly collected a 5 cm diameter x10 cm deep soil sample with a soil corer (AMS Samples, American Falls, Idaho, USA) after clipping the vegetation in June 2013. After weighing and sieving (4 mm mesh) the soil, we extracted a 20 g subsample in 1 mol l-1 KCl for 1.5 h on an end-over-end shaker and thereafter filtered it through ashless folded filter paper (DF 5895 150, ALBET LabScience, Hahnenmühle FineArt GmbH, Dassel, Germany). From these filtrates NO3- concentrations were measured colorimetrically (Norman and Stucki 1981) and NH4+with flow injection analysis (FIAS 300, Perkin Elmer, Waltham Massachusetts, USA) (Risch and others 2015). We dried the rest of the sample 105 °C to constant mass to determine fine,fraction bulk density. A second soil sample was collected within each plot in June 2013 with a corer lined with a 5 x 13 cm aluminium cylinder. The corer was driven 11.5 cm deep into the soil so that the top 1.5 cm of the cylinder remained empty. Into this space we placed a polyester bag (250 µm) filled an ion-exchanger resin to capture the incoming N. The bag was filled with a 1:1 mixture of acidic and alkaline exchanger resin (ion-exchanger I KA/ion exchanger IIIAA, Merck AG, Darmstadt, Germany). We then removed 1.5 cm soil at the bottom of the cylinder and placed a second resin exchanger bag into this space to capture the N leached from the soil column. To assure that the exchange resin was saturated with H+ and Cl- prior to filling the bags, the mixture was stirred with 1.2 ml l-1 HCl for 1 h and then rinsed with demineralized water until the electrical conductivity of the water reached 5 µm cm-1. The cylinder with the resin bags in place was reinserted into the soil with the top flush to the soil surface and incubated for three months. We recollected the cylinders in September 2013. Each resin bag and 20 g of sieved soil (4 mm mesh) from each cylinder were then separately extracted with KCl and NO3- and NH4+ concentrations were measured. Nitrate and NH4+ concentrations of all samples were then converted to a content basis by multiplying their values with fine fraction bulk density. Net N mineralisation was thereafter calculated as the difference between the N content of the samples collected at the end of the three-month incubation (including the N extracted from the bottom resin bag) and the N content at the beginning of the incubation (Risch and others 2015).
Soil CO2 emissions were measured every two weeks between 0900 and 1700 hrs from early May through late September 2013 with a PP-Systems SRC-1 soil respiration chamber (15 cm high, 10 cm diameter; closed circuit) attached to a PP-Systems EGM-4 infrared gas analyser (PP-Systems, Amesbury, MA, USA) on two locations per plot (Risch and others 2013). The chamber was placed on randomly placed, permanently installed PVC collars (10 cm diameter) driven 5 cm into the soil at the beginning of the study (Risch and others 2013). Freshly germinated plants growing within the collars were removed prior to each measurement to avoid measuring plant respiration or photosynthesis. The two measurements collected per plot and sampling date were averaged.
Soil moisture (with time domain reflectometry; Field-Scout TDR-100, Spectrum Technologies, Plainfield, Illionois, USA) and temperature (with a waterproof digital pocket thermometer; Barnstead International, Dubuque, Iowa, USA) were measured at five random locations per plot every two weeks during the growing seasons during the experiment for the 0 to 10 cm depth (Risch and others 2013, 2015). As soil moisture and soil temperature were highly negatively correlated (Risch and others 2013), we only used soil moisture for this study. We used plot-level averages of all values available to capture soil moisture variability during the five years of the experiment. The results remained unchanged when we only used soil moisture from the 2013 growing season.
Numeral calculations and statistical analyses
Ecosystem coupling. We conducted principal component analyses (PCAs; unscaled) at the complete dataset level using the abundances of each taxonomical entity to describe each of the five different communities used in this study: aboveground-dwelling invertebrates, vascular plants, soil microorganisms, soil arthropods and soil nematodes. We retained the first two components (PCA axis 1 and PCA axis 2) of each analysis as we found them to adequately represent the temporal and spatial variability of our 90 treatment plots in previous studies55,67. Together they explained a total of 71.70% of the variation for aboveground invertebrates, 44.36% for plants, 44.85% for soil microorganisms, 61.85% for soil arthropods and 77.19% for soil nematodes. In addition, we used soil pH and soil organic C content as a proxy for soil chemical properties, soil bulk density as a proxy for soil physical properties and soil moisture (negatively correlated with soil temperature) as a proxy for soil micro-climatic conditions for an overall total of fourteen constituents.
We calculated ecosystem coupling9 for each exclosure treatment within each vegetation type (i.e., 2  5 treatment combinations in total) as an integrated measure of pairwise ecological interactions between ecosystem constituents representing ecological communities and the soil abiotic environment. These ecological interactions are defined by non-parametric Spearman rank correlation analyses between two constituents, excluding interactions involving two abiotic constituents (e.g., soil pH vs. soil moisture) and interactions between the first (PC1) and second (PC2) component of each community type, as these are orthogonal by definition. Interactions between abiotic constituents were excluded from the analyses because the focus of our study was on communities and how they interact with one another and their surrounding environment; therefore, including abiotic-abiotic interactions was not of interest here. Given that the effectiveness of our experimental design resulted in that no community composition data of aboveground-dwelling invertebrates was available for the “None” plots (all animals excluded), only thirteen instead of fourteen constituents were included in the ecosystem coupling calculations for this treatment. The complete absence of aboveground invertebrates represents the most extreme case of disturbance between aboveground animal communities and the rest of the ecosystem constituents. This may have resulted in a slight overestimation of ecosystem coupling for these plots.
	Average ecosystem coupling was calculated as follows:
Ecosystem coupling=
where Xi is the absolute Coupling was calculated value of the Spearman’s rho coefficient of the ith correlation for each treatment within each vegetation type (i.e., based on nine replicates each), considering and n is the number of pairwise comparisons considered (n = a total of 80; interactions (56 in the case of the “None” treatment). We considered a total of 40 biotic-biotic interactions (i.e., concerning two community-level principal components such as plants and microbes; 24 in the case of the “None” treatment) and 40 abiotic-biotic (i.e., concerning one community-level principal component and one abiotic factor, e.g., plant community and soil properties; 32 in the case of the “None” treatment).	Coupling was calculated for each treatment within each vegetation type (i.e., based on nine replicates each), considering a total of 80 interactions (56 in the case of the “None” treatment). We considered a total of 40 biotic-biotic interactions (i.e., concerning two community-level principal components such as plants and microbes; 24 in the case of the “None” treatment) and 40 abiotic-biotic (i.e., concerning one community-level principal component and one abiotic factor, e.g., plant community and soil properties; 32 in the case of the “None” treatment).
To establish whether constituents were significantly and positively coupled within treatments (i.e., the average of their correlation coefficients were greater than in a null model where correlation only happens by chance), we calculated one-tailed p-values based on permutation tests with 999 permutations.

We considered six ecosystem functions and process rates commonly used to assess ecosystem functioning (Meyer and others 2015; Manning and others 2018). Plant N content represents a measure of forage quality, while plant richness has been shown to stabilise biomass production, thus allowing the system to respond to changes in herbivory. Soil net N mineralisation, soil respiration, root biomass, and microbial biomass represent fluxes or stocks of energy. For all functions and processes higher values represent higher functioning (Manning and others 2018). All these variables were measured in the last year of the experiment (2013). We then quantified ecosystem multifunctionality using the multiple threshold approach (Byrnes and others 2014; Manning and others 2018), which considers the number of functions that are above a certain threshold, over a series of threshold values (typically 10-99%) that are defined based on the maximum value of each function. We weighted all our functions equally for these calculations (Manning and others 2018). The number of functions in a plot with values higher than a given threshold value for the respective function is summed up. The sum represents ecosystem multifunctionality for that plot. Given that choosing any particular threshold as a measure of ecosystem multifunctionality is arbitrary, we calculated the average of thresholds from 10-90% (in 10% intervals) as a more integrated representation of ecosystem multifunctionality.
We used Pearson correlations to explore the relationships between ecosystem coupling (all interactions, biotic-biotic interactions, abiotic-biotic interactions involving above- and belowground constituents, and all interactions, biotic-biotic interactions, abiotic-biotic interactions involving belowground constituents only) and ecosystem multifunctionality by calculating the slopes of all relationships between ecosystem coupling and multifunctionality for all thresholds between 10 and 99%. We also related ecosystem coupling with the average of multifunctionality at thresholds between 30-80% as explained before and considered this correlation as a robust indication of the type of association between these two variables. In addition, we explored the relationships between ecosystem coupling (all interactions, biotic-biotic interactions, abiotic-biotic interactions involving above- and belowground constituents, and all interactions, biotic-biotic interactions, abiotic-biotic interactions involving belowground constituents only) and individual ecosystem functions. The effects of exclosures and vegetation type on individual functions and multifunctionality were evaluated using linear mixed effects models ('lme' function of the nlme package), with exclosure and vegetation type as fixed effects and fence as a random factor. All statistical analyses and numerical calculations were done in R version 3.4.0 (R Core Team 2016).

#References

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- Blackwood CB, Marsh T, Kim S-H, Paul EA. 2003. Terminal Restriction Fragment Length Polymorphism Data Analysis for Quantitative Comparison of Microbial Communities. Appl Environ Microbiol 69:926–32. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC143601/
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- Liu WT, Marsh TL, Cheng H, Forney LJ. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63:4516–22. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168770/
- Manning P, van der Plas F, Soliveres S, Allan E, Maestre FT, Mace G, Whittingham MJ, Fischer M. 2018. Redefining ecosystem multifunctionality. Nat Ecol Evol 2:427–36. https://doi.org/10.1038/s41559-017-0461-7
- Meola M, Lazzaro A, Zeyer J. 2014. Diversity, resistance and resilience of the bacterial communities at two alpine glacier forefields after a reciprocal soil transplantation. Environ Microbiol 16:1918–34. https://onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.12435
- Meyer ST, Koch C, Weisser WW. 2015. Towards a standardized Rapid Ecosystem Function Assessment (REFA). Trends Ecol Evol 30:390–7. http://www.sciencedirect.com/science/article/pii/S0169534715000968
- Norman R., Stucki JW. 1981. The determination of nitrate and nitrite in soil extracts by ultraviolet spectrophotometry. Soil Sci Soc Am J 45:347–53.
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- Oostenbrink M. 1960. Estimating nematode populations by some selected methods. In: Sasser NJ, Jenkins WR, editors. Nematology. Chapel Hill, NC, USA: University of North Carolina Press. pp 85–101.
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- Risch AC, Schütz M, Vandegehuchte ML, Van Der Putten WH, Duyts H, Raschein U, Gwiazdowicz DJ, Busse MD, Page-Dumroese DS, Zimmermann S. 2015. Aboveground vertebrate and invertebrate herbivore impact on net N mineralization in subalpine grasslands. Ecology 96:3312–22.
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- Schütz M, Risch AC, Leuzinger E, Krüsi BO, Achermann G. 2003. Impact of herbivory by red deer (Cervus elaphus L.) on patterns and processes in subalpine grasslands in the Swiss National Park. For Ecol Manage 181:177–88.
- Vandegehuchte ML, van der Putten WH, Duyts H, Schütz M, Risch AC. 2017a. Aboveground mammal and invertebrate exclusions cause consistent changes in soil food webs of two subalpine grassland types, but mechanisms are system-speciﬁc. Oikos 126:212–23.
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- Vandegehuchte ML, Trivellone V, Schütz M, Firn J, de Schaetzen F, Risch AC. 2018. Mammalian herbivores affect leafhoppers associated with specific plant functional types at different timescales. Funct Ecol 32:545–55.
- Wirthner S, Frey B, Busse MD, Schütz M, Risch AC. 2011. Effects of wild boar (Sus scrofa L.) rooting on the bacterial community structure in mixed-hardwood forest soils in Switzerland. Eur J Soil Biol 47:296–302. http://dx.doi.org/10.1016/j.ejsobi.2011.07.003
- Zumsteg A, Luster J, Göransson H, Smittenberg RH, Brunner I, Bernasconi SM, Zeyer J, Frey B. 2012. Bacterial, Archaeal and Fungal Succession in the Forefield of a Receding Glacier. Microb Ecol 63:552–64. https://doi.org/10.1007/s00248-011-9991-8

ecosystem-coupling

display_name: ecosystem-coupling

ecosystem-functions

display_name: ecosystem-functions

ecosystem-multifunctionality

display_name: ecosystem-multifunctionality

exclusion

display_name: exclusion

grassland

display_name: grassland

grazing

display_name: grazing

invertebrates

display_name: invertebrates

subalpine

display_name: subalpine

swiss-national-park

display_name: swiss-national-park

vertebrates

display_name: vertebrates

en: Ecosystem coupling and multifunctionality - exclosure experiment


en: place-attachment sense-of-place electrodermal-activity landscape urban-ecology

en: 04. Scripts

en: 03. Publication Ready Data

en: 00. EDA Raw Data

en: 05. Visuals

en: 02. Questionnaire Data

en: 01. EDA Processed Data

en: This repository contains data on EDA measurements of visitors with different cultural backgrounds in virtual urban park settings. The parks are a Persian garden (Shiraz, Iran) and a historical park in Zurich, Switzerland. The cultural background of the visitors is Persian and Central European. The repository contains raw data from EDA, processed time series and statistical procedures.

electrodermal-activity

display_name: electrodermal-activity

place-attachment

display_name: place-attachment

sense-of-place

display_name: sense-of-place

urban-ecology

display_name: urban-ecology

educ

en: Education, culture and sport

en: Electrodermal Activity (EDA) of Bi-cultural Visitors In Virtual Park Settings


maintainer: Thorsten Bartels-Rausch

en: cryosphere arctic polar antartic laboratory-study snow sea-salt-aerosol

en: Experimental Results: Uptake coefficients vs. temperature and ozone concentration

en:
* Final Data to Figure 3: Uptake coefficients as a function of temperature at 5E12 molecules per cm3 ozone concentration.
* Final Data to Figure 6: Uptake coefficients at different temperatures as a function of gas- phase ozone concentration.

The average ozone uptake coefficients of the three cycles between the bypass and the flow tube per repeat is taken as the mean uptake coefficient for each experiment. Gamma was corrected for gas phase diffusion limitation following the Cooney–Kim– Davis (CKD) method52 (see supporting material of publication for details).

en: Experimental results of uptake coefficient vs. temperature and ozone concentration

en:
Data to Figure 3: Measured uptake coefficients as a function of temperature at 5E12 molecules per cm3 ozone concentration.

Data to Figure 6: Measured uptake coefficients at different temperatures as a function of gas- phase ozone concentration.

en: The reaction of ozone with bromide in polar regions results in the formation of reactive bromide species with impacts on ozone budget and the oxidative capacity of the lower atmosphere. Here, we present a data investigating the temperature dependence of bromide oxidation by ozone using a coated wall flow tube reactor coated with an aqueous mixture of citric acid and sodium bromide, a proxy for sea salt aerosol in snow or the free troposphere. Thus study shows the effect of of organic species at relatively mild temperatures between the freezing point and eutectic temperature as typical for Earth's cryosphere.

antartic

display_name: antartic

arctic

display_name: arctic

cryosphere

display_name: cryosphere

laboratory-study

display_name: laboratory-study

polar

display_name: polar

sea-salt-aerosol

display_name: sea-salt-aerosol

snow

display_name: snow

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Kinetic experiments on the oxidation of bromide by ozone from 289-245 K.


en: urban-morphology built-up-classification topography forest-gain planning-outcome spatial-modelling forest-persistence nature-conservation urban-sprawl basic-services land-use-and-cover-change urban-compactness

en: Master plan Ubatuba (zones)

en: Population density per pixel (change per year)

format: GeoTIFF

en: Mean income in Reais (R$) per census sector (change per year)

en: slope

en: Slope °

en: Increase in waste collection service

en:
Basic education in % per census sector (change per
year)

en: Increase in clean water provision service

en: Permanent housing density increase

en: Increase in sanitation service

en: Topographic Index Position (TPI)

en: Ecological-Economic Zoning (EEZ)

format: SHP

en: Descricao dos dados em portiuguês

en: Portugues description

en: isolated

en: New built-up pixels classified as isolated

en: Native forest cover gains from 2005 to 2015

en: Human Development Index (HDI) per municipality (change per year)

en: Urban persistence: Built-up 2005 = Built-up 2015

en: infill

en: New built-up pixels classified as infill

en: Increase in Normalized Difference Vegetation Index

en: Variables description

en: Table of content. Variables description, source, and other important information

en: Axial

en: New built-up pixels classified as axial

en: Native forest cover persistence from 2005 to 2015

en: Master plan Ihabela (zones)

en:
The present dataset is part of the published scientific paper entitled “The role of spatial planning in land change: An assessment of urban planning and nature conservation efficiency at the southeastern coast of Brazil” (Pierri Daunt, Inostroza and Hersperger, 2021). In this work, we evaluated the conformance of stated spatial planning goals and the outcomes in terms of urban compactness, basic services and housing provision, and nature conservation for different land-use strategies. We evaluate the 2005 Ecological-Economic Zoning (EEZ) and two municipal master plans from 2006 in a coastal region in São Paulo State, Brazil. We used Partial Least Squares Path Modelling (PLS-PM) to explain the relationship between the plan strategies and land-use change ten years after implementation in terms of urban compactness, basic services and housing increase, and nature conservation.

We acquired the data for the explanatory variables from different sources listed on Table 1. Since the model is spatially explicit, all input data were transformed to a 30 m resolution raster. Regarding the evaluated spatial plans, we acquired the zones limits from the São Paulo State Environmental Planning Division (CPLA-SP), Ilhabela and Ubatuba municipality.

1)	Land use and cover data: Urban persistence, Urban axial, Urban infill, Urban Isolates, Forest cover persistence, Forest cover gain, NDVI increase

We acquired two Landsat Collection 1 Higher-Level Surface Reflectance images distributed by the U.S. Geological Survey (USGS), covering the entire study area (paths 76 and 77, row 220, WRS-2 reference system, https://earthexplorer.usgs.gov/). We classified one image acquired by the Landsat 5 Thematic Mapper (TM) sensor on 2005-05-150, and one image from the Landsat 8 Operational Land Imager (OLI) sensor from 2015-08-15. We collected 100 samples for forest cover, 100 samples for built-up cover and 100 samples for other classes. We then classified these three classes of land cover at each image date using the Support Vector Machine (SVM) supervised algorithm (Hsu et al., 2003), using ENVI 5.0 software.

Land-use and land-cover changes from 2005 to 2015 were quantified using map algebra, by mathematically adding them together in pairs (10*LULC2015 + LULC2005). We reclassified the LULC data into forest gain (conversion of any 2005 LULC to forest cover in 2015); forest persistence (2005 forested pixels that remained forested in 2015); new built-up area (conversion of any 2005 LULC to built-up in 2015); and urban maintenance (2005 built-up pixels that remained built-up in 2015).

To describe the spatial configuration of the urban expansion, we classified the new built-up areas into axial, infill and isolated, following Inostroza et al. (2013) (For details, please refer to Supplementary Material I at the original publication).

The NDVI was obtained from the same source used for the LULC data. With the Google Engine platform, we used an annual average for the best pixels (without clouds) for 2005 and 2015, and we calculated the changes between dates. We used increases of > 0.2 NDVI to represent an improvement in forest quality.

2)	Federal Census data organization: Urban Basic Services and Housing indicator, socioeconomic and population:

The data used to infer the values of basic services provision, socioeconomic and population drivers was derived from the Brazilian National Census data (IBGE, 2000 and 2010). Population density, permanent housing unit density, mean income, basic education, and the percentage of houses receiving waste collection, sanitation and water provision services, called basic services in the context of this study, were calculated per 30 m pixel. The Human Development Index is only available at the municipality level. We attributed the HDI for the vector file with the municipality border, and we rasterized (30 m resolution) this file in QGIS. Annual rates of change were then calculated to allow comparability between LULC periods. To infer the BSH, we used only areas with an increase in permanent housing density and basic services provision (See Supplementary Material I at the original publication).

3)	Topographic drivers

To infer the values of the topographic driver, we used the slope data and the Topographic Index Position (TPI) based on the digital elevation model from SRTM (30 m resolution) produced by ALOS (freely available at eorc.jaxa.jp/ALOS/en/about/about_index.htm), and both variables were considered constant from 2005 to 2015 (See Supplementary Material I at the original publication).

basic-services

display_name: basic-services

built-up-classification

display_name: built-up-classification

forest-gain

display_name: forest-gain

forest-persistence

display_name: forest-persistence

land-use-and-cover-change

display_name: land-use-and-cover-change

nature-conservation

display_name: nature-conservation

planning-outcome

display_name: planning-outcome

spatial-modelling

display_name: spatial-modelling

topography

display_name: topography

urban-compactness

display_name: urban-compactness

urban-morphology

display_name: urban-morphology

en: Spatially explicit data to evaluate spatial planning outcomes in a coastal region in São Paulo State, Brazil


aerosol-data-davos-wolfgang

title_for_slug: aerosol-data-davos-wolfgang

en: particles drincz ice-nucleation aerosol raclets inp

en: APS Dataset Davos Wolfgang

en: The APS file contains aerosol data (total number concentration, median, mean, geometric mean, mode and geometric standard deviation of the size distribution) for aerodynamic diameters between 0.5 μm and ~20 μm as well as instrument characteristics, in a temporal resolution of 20 seconds, with time in UTC, measured at Davos Wolfgang.

mimetype: application/x-netcdf

en: OPC GT-526S Dataset Davos Wolfgang

en: Particle counts were recorded in six size channels (0.3, 0.5, 0.8, 1.5, 2.5 and 5 μm) in a resolution of 20 seconds (time in UTC) by a particle counter (GT-526S, Met One Instruments, Inc.).

en: DRINCZ Dataset Davos Wolfgang

en: The DRINCZ file contains information on temperature (in °C) dependent frozen fractions, number of Ice Nuleating Particles (INP, per standard liter) and differential INP concentrations (per standard liter and Kelvin).

en: OPC-N3 Dataset Davos Wolfgang

en: Particle concentrations in a size range of 0.35 μm to 40 μm were measured with an OPC-N3 (Alphasense, Inc.) in a resolution of 20 seconds (time in UTC). PM₁, PM₂,₅ and PM₁₀ were directly derived.

en: SMPS Dataset Davos Wolfgang

en: The SMPS file contains aerosol data (particle concentration, total number concentration, median, mean, geometric mean, mode and geometric standard deviation of the size distribution) in a size range between 12 and 460 nm (electrical mobility diameter) as well as instrument characteristics (sample temperature, pressure, relative humidity, mean free path and gas viscosity), in a temporal resolution of 2 minutes, with time in UTC, measured at Davos Wolfgang.

en:
Aerosol properties were measured between February 8 and March 31 2019 at the measurement site Davos Wolfgang (LON: 9.853594, LAT: 46.835577). Optical and aerodynamic particle counters, as well as a scanning mobility particle size spectrometer and an ice nuclei counter were deployed to report particle concentrations and size distributions in fine (10-1000 nm) and coarse mode (> 1000 nm), cloud condensation nuclei concentrations (CCNCs) and ice nuclei particle concentrations (ICNCs). The ambient particles were transported via a heated inlet to be distributed to the particle detecting devices inside the setup room.

Optical Particle Counter (OPC): Light scattering of a diode laser beam caused by travelling particles is used in the both, the OPC-N3 (0.41 - 38.5 μm) and GT-526S (0.3 – 5 μm), to determine their size and number concentration. For the OPC-N3, particle size spectra and concentration data are used afterwards to calculate PM₁, PM₂,₅ and PM₁₀ (assumptions: particle density: 1.65 g cmˉ³, refractive index: 1.5+i0).

Aerodynamic Particle Sizer (APS): The APS (3321, TSI Inc.) measured the particle size distribution for aerodynamic diameters between 0.5 μm and ~20 μm by the particle’s time-of-flight and light-scattering intensity (assumptions: particle density 1 g cmˉ³).

Scanning Mobility Particle Size Spectrometer (SMPS): Particle number concentrations in a size range between 12 and 460 nm (electrical mobility diameter) were measured at Davos Wolfgang, using a Scanning Mobility Particle Sizer Spectrometer (3938, TSI Inc.). The classifier (3082, TSI Inc.) was equipped with a neutralizer (3088, TSI Inc.) and a differential mobility analyzer working with negative polarity (3081, TSI Inc.). The size selected particles were counted by a water-based condensation particle counter (3788 , TSI Inc.). The TSI AIM software was used to provide particle size distributions by applying multiple charge and diffusion loss corrections (assumptions: particle density 1 g cmˉ³).

Coriolis μ and DRINCZ: A microbial air sampler (Coriolis μ, bertin Instruments) was used to collect airborne particles for investigating their ice nucleating ability with a droplet freezing device. Particles larger than 0.5 μm were drawn with an air flow rate of up to 300 l minˉ¹ into the cone and centrifuged into the wall of the cone due to the forming vortex. The liquid sample was transferred into the DRoplet Ice Nuclei Counter Zurich (DRINCZ, ETH Zurich) to study heterogeneous ice formation (immersion freezing mode) of ambient airborne particles.

aerosol

display_name: aerosol

drincz

display_name: drincz

ice-nucleation

display_name: ice-nucleation

inp

display_name: inp

particles

display_name: particles

raclets

display_name: raclets

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Aerosol Data Davos Wolfgang


wind-lidar-davos-wolfgang

title_for_slug: wind-lidar-davos-wolfgang

en: wolfgangpass raclets wind profiles lidar

en: Wind LIDAR data Wolfgang

en: A Leosphere WidCube 100S was deployed at Davos Wolfang, measuring wind profiles as well as performing PPI and RHI scans. Time format is in UTC with highest time resolution of 5 seconds.

en: Scanning wind Lidar from Meteoswiss was installed at Davos Wolfgang (LON: 9.853594, LAT: 46.835577) and measured from 200 m above ground to 8100 m. The time resolution is up to 5 seconds. The Lidar was measuring wind profiles but also performed plan position indicator (PPI) and range height indicator (RHI) scans.

lidar

display_name: lidar

profiles

display_name: profiles

wind

display_name: wind

wolfgangpass

display_name: wolfgangpass

en: Wind LIDAR Davos Wolfgang


data-analysis-toolkits

title_for_slug: data-analysis-toolkits

en: data-analysis hypothesis-testing error-propagation uncertainty statistics bayesian-inference

en: Toolkit 2: quantifying data distributions using descriptive statistics

en: Toolkit 5: uncertainty analysis and error propagation

en: Gaussian error propagation, monte carlo methods, and first-order, second-moment error propagation

en: Toolkit 8: Hodges-Lehmann estimators

en: A quick introduction to Hodges-Lehmann estimators (nonparametric measures of effect size)

en: Toolkit 7: hypothesis testing, significance, and power

en: An overview of basic concepts -- and common pitfalls -- in statistical hypothesis testing, statistical significance, and power analysis

en: Toolkit 3: tools for transforming data

en: The ladder of powers and a few other cool transformations

en: Toolkit 11: serial correlation

en: Tools for detecting and correcting for serial correlation in analyses of time series

en: Toolkit 4: confidence intervals

en: Toolkit 9: Experimentwise error rates and statistical fishing expeditions

en: Statistical fishing expeditions, and how to avoid being misled by them

en: toolkit 6: averaging in nonlinear functions

en: The average of a nonlinear function will not equal the function evaluated at its average inputs (the mean of the function will differ from from the function of the mean). This toolkit shows how to estimate that averaging bias.

en: Toolkit 10: linear regression

en: An overview of the math, logic, and pitfalls of ordinary least-squares linear regression

en: Toolkit 12: weighted averages and their uncertainties

en: There are two different ways to calculate the uncertainty of a weighted average. Software packages often don't tell you which one they are reporting, and the resulting errors can be huge.

en: Toolkit 1: graphically displaying data distributions

en:
These are condensed notes covering selected key points in data analysis and statistics. They were developed by James Kirchner for the course "Analysis of Environmental Data" at Berkeley in the 1990's and 2000's. They are not intended to be comprehensive, and thus are not a substitute for a good textbook or a good education!

License: These notes are released by James Kirchner under a Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) license.

bayesian-inference

display_name: bayesian-inference

data-analysis

display_name: data-analysis

error-propagation

display_name: error-propagation

hypothesis-testing

display_name: hypothesis-testing

statistics

display_name: statistics

uncertainty

display_name: uncertainty

en: Data analysis toolkits


maintainer: Sven-Eric Hopf

en: ash-dieback iap forest fraxinus monitoring

en: Monitoring of ash trees as part of the Intercantonal Forest Observation Programme

en: Packgroun information on data for the publication: Spread and Severity of Ash Dieback in Switzerland – Tree Characteristics and Landscape Features Explain Varying Mortality Probability, (Klesse et al. 2021, Front. For. Glob. Change 4:645920., doi: 10.3389/ffgc.2021.645920)

en:
In 2013, the Institute for Applied Plant Biology (IAP) started a monitoring programme to study the development and the spatial variation of the ash dieback disease with the aim to find some partially resistant European ash trees (Fraxinus excelsior).
We collaborate as co-authors for the publication: Spread and Severity of Ash Dieback in Switzerland - Tree Characteristics and Landscape Features Explain Varying Mortality Probability (Klesse et al. 2021 in frontiers)

ash-dieback

display_name: ash-dieback

forest

display_name: forest

fraxinus

display_name: fraxinus

iap

display_name: iap

monitoring

display_name: monitoring

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.