maintainer: Océane Hames

en: snow-deposition antarctica snow-transport mosaic arctic-sea-ice openfoam

en: MOSAiC Met City preliminary (Level 2) wind data

en:
Extract from the preliminary MOSAiC atmospheric data (Level 2) for the time period 6th to 13th of November, 2019.
This data was used to set up the fluid forcing parameters in the snowBedFoam simulations on MOSAiC sea ice. It is being published in this repository with the kind permission from Matthew Shupe and his team.
The final processed and quality controlled version of this dataset (Level 3) has not been published yet. A complete reference will be added in this description once it is released.

en:
OpenFOAM-5.0 scripts containing the implemented Eulerian-Lagrangian snow transport model.
The code file provided here is not updated. The most recent version of the script can be found on the WSL/SLF GitLab repository: https://gitlabext.wsl.ch/atmospheric-models/snowbedfoam-v1-0.git

en: Paper Draft

en: This is the initial draft of the paper where the snowBedFoam 1.0. results are tested against Terrestrial Laser Scan (TLS) measurements of snow dynamics on Arctic sea ice (MOSAiC expedition). It highlights the numerical limitations of our model as well as the measurement uncertainties, which may occur in such extreme environments.

en:
OpenFOAM-2.3.0. scripts containing the implemented Eulerian-Lagrangian snow transport model.

The code file provided here is not updated. The most recent version of the script can be found on the WSL/SLF GitLab repository: https://gitlabext.wsl.ch/atmospheric-models/snowbedfoam-v1-0.git

en: Snowdrift measurements around Neumayer Station III

en: Files containing the topographical data barometrically measured in June 2009 around the German Antarctic Research station Neumayer III. Those measurements are compared to the snowBedFoam simulations to assess the ability of the model to reproduce real snow distribution observations.

en: Neumayer III simulations

en:
Snow distribution results around Neumayer Station III obtained for the sensitivity analysis and comparison to measurements. The file contains several sub-folders, namely:
-COMP: simulation output for the comparison to measurements;
-FLOW: simulation output for the study of wind forcing impact;
-simulation_exampleCase: example case of a snowBedFoam simulation with the reference Neumayer Station mesh;
-SNOW: simulation output for the study of snow properties impact;
-STRUCT: simulation output for the study of structure properties impact.

en:
snowBedFoam 1.0. is a snow transport solver implemented in the computational fluid dynamics software OpenFOAM. It is adapted from the standard multi-phase flow solver DPMFoam for application in snow-influenced environments.
To simulate aeolian snow transport, snowBedFoam 1.0. handles coupled Eulerian–Lagrangian phases, which involve a finite number of particles (snow) spread in a continuous phase (air). The snow erosion and deposition are modelled through physics-based equations similar to the ones employed in the well-established LES-Lagrangian Stochastic Model (Comola and Lehning, 2017 ; Sharma et al., 2018 ; Melo et al., 2022). This modelling approach is computationally intensive and thus adapted to simulate snow movement and distribution on small scale terrain.
First, snowBedFoam 1.0. was applied to topographical data collected on Arctic sea ice during the MOSAiC expedition (Clemens-Sewall, 2021). Together with atmospheric data from the MOSAiC Met City (Shupe et al., 2021) used for the fluid forcing, the model was able to accurately simulate the zones of erosion and deposition of snow along a complex ice ridge structure (Hames et al., 2022).
Second, snowBedFoam 1.0. was used to simulate the snow distribution around the German Antarctic research station Neumayer Station III. The effect of snow properties, fluid forcing and aerodynamic structures on the snow accumulation were assessed.
snowBedFoam 1.0 was implemented in 2 different OpenFOAM versions, namely OpenFOAM-2.3.0 and OpenFOAM-5.0. The latter offers more options for turbulence models and boundary conditions. The fundamental model equations were not changed from one implementation to the other, thus both still correspond to snowBedFoam 1.0. The two branches are called snowBedFoam-v1-2.3.0 (OpenFOAM-2.3.0) and snowBedFoam-v1-5.0 (OpenFOAM-5.0). The core codes of snowBedFoam 1.0. are directly accessible on the WSL/SLF GitLab repository (more details in the Resources section).

antarctica

display_name: antarctica

arctic-sea-ice

display_name: arctic-sea-ice

mosaic

display_name: mosaic

openfoam

display_name: openfoam

snow-deposition

display_name: snow-deposition

snow-transport

display_name: snow-transport

en: snowBedFoam: an OpenFOAM Eulerian-Lagrangian solver for modelling snow transport


soil-respiration-exclosure-experiment

maintainer: EnviDat Support

title_for_slug: soil-respiration-exclosure-experiment

en: soil-respiration grazing subalpine grassland ungulates

state: active

type: dataset

en: Soil respiration Switzerland

en:
ID: Fence number

Year	:Year of sampling

mean.CO2: soil respiration measured with PP-systems SRC-1 soil respriation chamber attached to a EGM-4 infrared gas analyser; units CO2 g m-2 h-1

Grassland: Grasslands where fences were errected. Note that on large grasslands (STAB, GRIM, MING) 2 pairs of fences were errected (2 in short, 2 in tall-grass vegetation), on small grasslands (DADA, MARG, BOTS) only one pair of fences was errected (1 short-grass; one-tallgrass vegetation)

Fence: Fence number; un-even numbers on short-grass vegetation (1,3,5,7,9,11,13,15,17), even numbers on tall-grass vegetation (2,4,6,8,10,12,14,16,18)

Vegetation:	1 = shortgrass vegetation, 2 = tall-grass vegetation (9 replicate fences on each vegetation type)

Treatment	: 1 = all herbivores grazing, 2 = large ungulates (red deer, chamois) excluded

format: XLS

en:
Location of data collection
The Swiss National Park (SNP) is located in the southeastern part of Switzerland, and covers an area of 170 km2, 50 km2 of which is forested, 33 km2 is occupied by alpine and 3 km2 by subalpine grasslands. Elevations range from 1350 to 3170 m a.s.l., and mean annual precipitation and temperature are 871 mm and 0.6°C measured at the Park’s weather station in Buffalora (1980 m a.s.l.) between 1960 and 2009 (MeteoSchweiz 2011). Founded in 1914, the SNP received minimal human disturbance for almost 100 years (no hunting, fishing, or camping, visitors are not allowed to leave the trails). Large (> 1 ha) homogeneous patches of short- and tall-grass vegetation characterize the subalpine grasslands. The average vegetation height of short-grass vegetation is 2 to 5 cm. Red fescue (Festuca rubra L.), quaking grass (Briza media L.) and common bent grass (Agrostis tenuis Sipthrob) are the predominating plant species in this vegetation type. Tussocks of evergreen sedge (Carex sempervirens Vill.) and mat grass (Nardus stricta L.) are predominant in the tall-grass vegetation, which averages 20 cm in vegetation height (Schütz and others 2006). Short-grass vegetation developed in areas where cattle and sheep rested (high nutrient input) during agricultural land-use (from 14th century until 1914); tall-grass vegetation developed in areas where cattle and sheep used to graze, but did not rest (Schütz and others 2003, 2006). Herbivores were shown to consume > 60% of the biomass in short-grass compared to < 20% in tall-grass vegetation (Schütz and others 2006). The herbivore community present in the SNP can be divided into four groups based on body size/weight: large [red deer (Cervus elaphus L.) and chamois (Rupricapra rupricapra L.); 30 - 150 kg], medium [marmot (Marmota marmota L.) and snow hare (Lepus timidus L.); 3 – 6 kg], and small vertebrate herbivores (small rodents: e.g. Clethrionomys spp., Microtus spp., Apodemus spp.; 30 – 100 g) as well as invertebrates (e.g. grasshoppers, caterpillars, cicadas, < 5 g).

Experimental design
We selected 18 subalpine grassland sites (9 short-grass, 9 tall-grass vegetation). The sites were spread across the entire park on dolomite parent material at altitudes of 1975 to 2300 meters. At each site we established an exclosure network (fences) in spring 2009 (early June), immediately after snowmelt. Each exclosure network consisted of a total of five 2 × 3 m sized plots that progressively excluded the different herbivores listed above (further labeled according to the herbivore guilds that had access to the respective plots “All”, “Marmot/Mice/Invertebrates”, “Mice/Invertebrates”, “Invertebrates”, “None”). The “All” treatment was thus accessible to all herbivores, was not fenced and was located at least 5 m away from a 2.1 m tall and 7 × 9 m main fence that enclosed the other four treatments. This fence was constructed of 10 × 10 cm wooden posts and electrical equestrian tape (AGRARO ECO, Landi, Bern, Switzerland; 20 mm width) mounted at 0.7 m, 0.95 m, 1.2 m, 1.5 m and 2.1 m above the ground that were connected to a solar charged battery (AGRARO Sunpower S250, Landi, Bern, Switzerland). We also mounted non-electrically charged equestrian tape at 0.5 m to help exclude deer and chamois, yet allow marmots and hares to enter safely. Within each main fenced area we randomly established four 2 × 3 m plots: (1) The “Marmot/Mice/Invertebrates” plot remained unfenced, thus, with the exception of red deer and chamois, all herbivores were able to access the plot, (2) The “Mice/Invertebrates” plot consisted of a 90 cm high electric sheep fence (AGRARO Weidezaunnetz ECO, Landi, Bern, Switzerland; mesh size 10 × 10 cm) connected to the solar panel and excluded all medium sized mammals (marmots, hares), but provided access for small mammals and invertebrates, (3) The “Invertebrates” plot provided access for invertebrates only and was surrounded by 1 m high metal mesh (Hortima AG, Hausen, Schweiz; mesh size 2 × 2 cm), (4) The “None” plot was surrounded by a 1 m tall mosquito net (Sala Ferramenta AG, Biasca, Switzerland; mesh size 1.5 × 2 mm) to exclude all herbivores. This plot was covered with a roof constructed of a wooden frame lined with mosquito mesh that was mounted on the wooden corner posts. We also treated this plot with a biocompatible insecticide (Clean kill original, Eco Belle GmbH, Waldshut-Tiengen, Germany) when needed to remove insects that might have entered during data collection or that hatched from the soil.

!!! The here published data set only contains data for “All”, and “Marmot/Mice/Invertebrates” (= ungulates excluded) plots !!!

Data collection
In-situ soil CO2 emissions were measured with a PP-Systems SRC-1 soil respiration chamber (closed circuit) attached to a PP-Systems EGM-4 infrared gas analyzer (PP-Systems, Amesbury, MA, USA) on two randomly selected locations on one subplot within each of the 90 plots. For each measurement the soil chamber (15 cm high; 10 cm diameter) was placed on a permanently installed PVC collar (10 cm diameter) driven five centimeters into the soil at the beginning of the study (June 2009). The measurements were conducted between 0900 and 1700 hours every two weeks from early to early September 2009, 2010, 2011 and 2013. Freshly germinated plants growing within the PVC collars were removed prior to each measurement to avoid measuring plant respiration/photosynthesis. The two measurements collected per plot every two weeks were averaged.

Please acknowledge the funding of the study: funded by the Swiss National Science Foundation, SNF grant-no 31003A_122009/1 to Anita C. Risch, Martin Schütz and Flurin Filli

grassland

display_name: grassland

grazing

display_name: grazing

soil-respiration

display_name: soil-respiration

subalpine

display_name: subalpine

ungulates

display_name: ungulates

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Soil respiration - exclosure experiment


maintainer: Felix Neff

en: long-term-experiment grassland insects restoration topsoil-removal diversity functional-traits functional-diversity

en: Insect traits

media_type: text/csv

en:
Functional traits of all herbivorous insect species sampled in the study.

- **Species**: Insect species name (following [Fauna Europaea](https://fauna-eu.org))
- **Author**: Author and year of species' description (following [Fauna Europaea](https://fauna-eu.org))
- **Group**: Insect group as used in the analyses
- **Body volume**: Body volume determined by body length, body width and body height (in mm$^3$)
- **Body_shape**: Ratio of body length to body width
- **Hind_femur_shape**: Ratio of hind-femur length to hind-femur width
- **Hind_front_leg_ratio**: Ratio of front-leg length to hind-leg length (leg length = femur length + tibia length)
- **Wing_length_rel**: Ratio of wing length to body length
- **Leg_length_rel**: Ratio of front-leg length to body length (leg length = femur length + tibia length)
- **Antenna_length_rel**: Ratio antenna length to body length
- **Eye_width_rel**: Ratio of eye width to head width (Auchenorrhyncha, Heteroptera) / to head height (Orthoptera)
- **Feeding_specialization**: Insect specialization on food source (*m*: monophagous, *o*: oligophagous, *p*: polyphagous)
- **Feeding_tissue**: Feeding tissue used for feeding (*c*: chewers, *x*: xylem, *p*: phloem, *m*: mesophyll, *m-p/r*: mesophyll as well as phloem and/or reproductive organs, *r*: reproductive organs, *se*: ripe seeds)
- **Hibernation**: Hibernation stage (*e*: egg, *e/n*: egg and nymph, *n*: nymph, *a*: adult)
- **Generations**: Number of generations per year (*1.5* stands for *1-2* generations per year)
- **Moisture_pref_mean**: mean of preferred habitat moistures (*1*: xerophilous, *2*: moderately xerophilous, *3*: moderately mesohygrophilous, *4*: mesohygrophilous, *5*: moderately hygrophilous, *6*: hygrophilous, *7*: moderately hydrophilous, *8*: hydrophilous)
- **Moisture_pref_range**: range of preferred habitat moistures (indicating degree of specialization)

format: CSV

mimetype: text/csv

en: Plot information

en:
Information on the experimental plots.

- **Plot**: ID of Plot
- **Treatment**: Experimental treatment
- **Landuse_history**: recent agricultural use for Initial; agricultural use before restoration for all restored sites
- **Last_tilled**: Last time the site was tilled
- **Intensity**: Frequency and intensity of mowing and manuring (*intensity1*: mowing once and no manure, i*ntensity2*: 2-3 times mowing and no manure, *intensity3*: 2-3 times mowing and manuring, *intensity4*: 4-5 times mowing and manuring)
- **Slope**: slope gradient according to classes defined by FAO (1990)
- **X**: X coordinate of the plot (CH1903)
- **Y**: Y coordinate of the plot (CH1903)
- **Cluster**: Spatial cluster of the plot

en: Insect abundance

en:
Abundance of adult insects recorded in the samplings on all experimental sites

- **Plot**: ID of Plot
- **Treatment**: Experimental treatment
- **Species**: Insect species name (following [Fauna Europaea](https://fauna-eu.org))
- **Author**: Author and year of species' description (following [Fauna Europaea](https://fauna-eu.org))
- **Group**: Insect group as used in the analyses
- **Number_Adults**: Number of adult individuals recorded
- **Herbivore**: Logical indicating whether the species is feeding as a herbivore (*TRUE*) or not (*FALSE*)

en:
This dataset contains all data, on which the following publication below is based.

**Paper Citation**:

Neff, F., Resch, M. C., Marty, A., Rolley, J. D., Schütz, M., Risch, A. C, Gossner, M. M. 2020. Long-term restoration success of insect herbivore communities in semi-natural grasslands: a functional approach. Ecological Applications, 30, e02133. [10.1002/eap.2133](https://doi.org/10.1002/eap.2133)

Please cite this paper together with the citation for the datafile.

 Methods

 Study site
The study area is situated within and nearby to Eigental nature reserve (47°27’36” to 47°29’06” N, 8°37’12” to 8°37’44” E, 461 to 507 m a.s.l.) in the vicinity of Zurich airport (Canton Zurich, Switzerland). Mean annual precipitation and temperature is 903 ± 136 mm and 9.14°C ± 0.50°C (mean ± SD for 2007-2017 (*MeteoSchweiz 2018*)). In 1967, the Eigental nature reserve was established to protect small and isolated remnants of species-rich, semi-natural grasslands (roughly 12 ha), which were embedded in an otherwise intensively managed landscape. It is characterized by oligo- to mesotrophic Molinion (semi-wet, matrix species *Molinia caerulea*) and Mesobromion (semi-dry, matrix species *Bromus erectus*) meadows (*Delarze et al. 2015*), reflecting small-scale habitat heterogeneity, mainly due to site-specific groundwater levels and slope inclination. As in most Central European grasslands, management is necessary to prevent shrub and tree invasions as well as to secure low levels of available soil nutrients and thus to maintain these species-rich habitats ([*Poschlod and WallisDeVries 2002*](https://doi.org/10.1016/S0006-3207(01)00201-4)).
In 1990, the government of the Canton Zurich decided to enlarge the Eigental nature reserve as a counter measure against degradation and biodiversity loss in semi-natural grasslands due to overutilization and the excessive input of nutrients (mostly nitrogen). Eleven patches of adjacent intensively managed grassland (in total roughly 20 ha) were targeted to be transformed into semi-natural grasslands. As a first restoration measure, fertilization was ceased, and biomass harvested three times to remove excessive soil nutrients from the original system and thus benefit plant species with low competitive ability on the long run. In 1995, the restoration efforts were increased and a large-scale experiment comprising three restoration measures with increasing intervention intensities was implemented:

- **Harvest only**: Initial restoration measures were continued with mowing and removing of the aboveground biomass two times a year (early summer and autumn).
- **Topsoil**: Removal of topsoil, depending on the thickness of the A horizon the upper 10 to 20 cm, in four randomly selected areas within the eleven patches in late autumn 1995. The size of the restoration area depended on individual patch size (2700 to 7000 m2).
- **Topsoil + Propagules**: Plant propagules were added on half of the area where topsoil was removed via application of fresh, seed-containing hay and hand-collected propagules of target species originating from semi-dry and semi-wet species-rich grasslands with local and regional provenance (within radius of 7 to 30 km) (1995, 1996, 1997).

Management of *Topsoil* and *Topsoil + Propagules* started five years after treatment implementation and included yearly mowing and removing of aboveground biomass (late summer or early autumn). The experiment was complemented with intensively managed grassland sites that share the same agricultural history as the restored sites (**Initial**; swards dominated by *Lolium perenne*, *L. multiflorum* and *Trifolium repens*): mowing and subsequent fertilizing (manure) up to five times a year, as well as different tillage regimes. Finally, sites were selected in target semi-dry and semi-wet grasslands (**Target**) located within the Eigental nature reserve and another nature reserve nearby (Altläufe der Glatt; 47°28’29” to 47°27’41” N, 8°31’56” to 8°32’26” E, 418 to 420 m a.s.l.). The selected target sites are mown and aboveground biomass removed once a year in late summer or early autumn. For each of the five treatments, we selected eleven plots (5 m × 5 m) spread across the sites. Altogether, the experiment included 55 plots.

 Arthropod sampling
Aboveground arthropods were sampled using suction sampling on four consecutive days in early July 2017 before the grasslands were mown. Arthropods were sampled in two locations on each 5 m × 5 m plot, once in the south-western and once in the north-eastern corner to account for possible spatial heterogeneity within the plots. Arthropods were sorted to order or lower taxonomic levels and individuals were identified to species level. We focused on three groups (Hemiptera: Auchenorrhyncha, Hemiptera: Heteroptera, Orthoptera),

 Functional traits
We used two sets of functional traits in this study.

**Morphometric traits**:
Body volume, body shape, hind femur shape, hind/front leg ratio, wing length, leg length, antenna length and eye width. We used trait measurements from [*Simons et al. (2016)*](http://dx.doi.org/10.1890/15-0616.1) and [*Neff et al. (2019)*](https://doi.org/10.1007/s10980-019-00872-1) and complemented them with measurements on study specimens. These measurements were conducted using a high-resolution measuring stereo microscope (Leica DVM6, Leica Microsystems) including automated high-resolution photo stacking with the software Leica Application Suite X (LAS X, © 2018 Leica Microsystems CMS GmbH) and Leica Map Premium (Leica Microsystems, © 1996-2017 Digital Surf) at WSL Birmensdorf. The eight morphometric traits were calculated from direct measurements of body parts on specimens of all sampled species. From each species, we measured at least one female and one male specimen. Additionally, for species that show wing dimorphism, we included the different wing morphs and weighted them by their prevalence reported in literature. For few species, of which not all wing morphs were available for measurements (10 cases), we estimated relative wing length from congeneric species or from the literature.

**Life-history traits**
Based on an existing data set collected by [*Gossner et al. (2015)*](http://dx.doi.org/10.1890/14-2159.1). We included traits describing different life-history characteristics of herbivore insect species, namely: feeding specialization, feeding tissue, hibernation stage and number of generations per year, which are related to insect species’ vulnerability to changes in plant community composition, microhabitat use and disturbance tolerance. To represent potential changes in habitat moisture with abandonment of intensive land use (e.g., change in ground-water level), we also included two traits related to preferred habitat moisture of the study species: moisture preference, describing species’ optimum habitat moisture, and moisture range, which describes the species’ range of preferable moisture conditions.

 References

Delarze, R., Y. Gonseth, S. Eggenberg, and M. Vust. 2015. Lebensräume der Schweiz: Ökologie - Gefährdung - Kennarten. 3rd ed. Ott, Bern.

Gossner, M. M., N. K. Simons, R. Achtziger, T. Blick, W. H. O. Dorow, F. Dziock, F. Köhler, W. Rabitsch, and W. W. Weisser. 2015. A summary of eight traits of Coleoptera, Hemiptera, Orthoptera and Araneae, occurring in grasslands in Germany. Scientific Data 2:150013.

MeteoSchweiz. 2018. Klimabulletin Jahr 2017. MeteoSchweiz, Zürich.

Neff, F., N. Blüthgen, M. N. Chisté, N. K. Simons, J. Steckel, W. W. Weisser, C. Westphal, L. Pellissier, and M. M. Gossner. 2019. Cross-scale effects of land use on the functional composition of herbivorous insect communities. Landscape Ecology 34:2001–2015.

Poschlod, P., and M. F. WallisDeVries. 2002. The historical and socioeconomic perspective of calcareous grasslands—lessons from the distant and recent past. Biological Conservation 104:361–376.

Simons, N. K., W. W. Weisser, and M. M. Gossner. 2016. Multi-taxa approach shows consistent shifts in arthropod functional traits along grassland land-use intensity gradient. Ecology 97:754–764.

diversity

display_name: diversity

functional-diversity

display_name: functional-diversity

functional-traits

display_name: functional-traits

insects

display_name: insects

long-term-experiment

display_name: long-term-experiment

restoration

display_name: restoration

topsoil-removal

display_name: topsoil-removal

en: Grassland restoration: insects and insect traits


maintainer: Dirk Nikolaus Karger

en: species-distribution-models climate-variablity amphibians range-maps generalized-additive-models reptiles sdm random-forests iucn niche-models chelsa generalized-linear-models interannual-climate-variability mammals

en: File containing the record dimension, genus, and species of the respective netcdf files

format: SERVICE

media_type: text/plain

en: Readme file containing the file naming convention, file dimensions, and variable names

format: TXT

en: Reptiles

media_type: application/zip

en: Species distribution models based on different climate predictor groups

format: ZIP

en: Mammals

en: Amphibians

en: File containing the climate predictors as SAGA grid files (.sgrd)

en: We modelled the global distribution of 730 amphibian, 1276 reptile, and 1961 mammal species globally as a function of current climate at a 0.5° spatial resolution using four different predictor groups composed of different combinations of input variables: mean climatic conditions, spatial climatic variability, and temporal (interannual) climatic variability.

amphibians

display_name: amphibians

chelsa

display_name: chelsa

climate-variablity

display_name: climate-variablity

generalized-additive-models

display_name: generalized-additive-models

generalized-linear-models

display_name: generalized-linear-models

interannual-climate-variability

display_name: interannual-climate-variability

iucn

display_name: iucn

mammals

display_name: mammals

niche-models

display_name: niche-models

random-forests

display_name: random-forests

range-maps

display_name: range-maps

reptiles

display_name: reptiles

sdm

display_name: sdm

species-distribution-models

display_name: species-distribution-models

en: Global species distributions for mammals, reptiles, and amphibians


tree-species-map-of-switzerland

maintainer: Tiziana Li Koch

title_for_slug: tree-species-map-of-switzerland

en: remote-sensing switzerland tree-species map forest

media_type: image/png

en: Image of the tree species map

format: PNG

en:
Dominant tree species map of Switzerland
We created a tree species map of Switzerland for the dominant tree species in the forested areas. The spatial resolution of the map is 10 m and the coordinate system is ETRS89-extended / LAEA Europe (EPSG 3035). The map comprises Sentinel-2 index time series from the year 2020, a digital elevation model and species reference data from the Swiss National Forest Inventory. The map is available as raster (.tif) or vector dataset (.gpkg).
**Access will be granted upon request.**
In total, the following 15 species were mapped:
*Abies alba*, *Acer pseudoplatanus*, *Alnus glutinosa*, *Alnus incana*, *Betula pendula*, *Castanea sativa*, *Fagus sylvatica*, *Fraxinus excelsior*, *Picea abies*, *Pinus cembra*, *Pinus mugo arborea*, *Pinus sylvestris*, *Quercus petraea*, *Quercus robur*, *Sorbus aucuparia*.

 Approach

 Data
- Swiss National Forest Inventory Data (stand species with > 60 % dominance in upper canopy; on at least more than 9 plots dominant)
- Sentinel-2 time series (2020, Indices: CCI, CIRE, NDMI, EVI, NDVI)
- Digital elevation model (DEM) (swissalti3d, 5 m)
- Biogeographical regions (Federal Office for the Environment FOEN)
- Forest mask 2017 (Approach: Waser et al., 2015)

 Modeling approach
We identified the most meaningful variables that led to separation of the respective groups by using random forest models with a forward feature selection (Meyer et al., 2018; Ververidis & Kotropoulos, 2005). In this approach, the final random forest model is solely built from the selected meaningful variables. By identifying meaningful variables, we can determine which variables might influence the grouping. Further, to avoid overfitting and overly optimistic results, we applied 10-fold spatial cross-validation and put all pixels from a plot in the same spatial fold.
The modeling was realized using the CAST package in R (Meyer et al., 2022), based on the well-known caret package (Kuhn, 2022). We used the ranger package in R (Wright & Ziegler, 2017) to implement the random forest models, due to its short computation time.

 Training data for modeling
- 295 Sentinel-2, DEM & Biogeographical variables
- 10525 tree species pixels

 Selected variables for final model
1. EVI of 2020.05.16
2. NDMI of 2020.03.12
3. CIRE of 2020.04.16
4. NDMI of 2020.07.05
5. CCI of 2020.05.11
6. dem
7. CCI of 2020.08.14
8. NDMI of 2020.08.24
9. CCI of 2020.12.22
10. NDMI of 2020.04.21
11. NDMI of 2020.11.17
12. NDMI of 2020.08.09
13. CIRE of 2020.03.22
14. CIRE of 2020.08.09
14. CCI of 2020.11.02
15. CIRE of 2020.06.10

 Overall Accuracy of final model
- 0.759

 Nationwide prediction
- Predicted throughout forest mask 2017 (Approach: Waser et al., 2015)
- Not applied on incomplete Sentinel-2 time series (own category in final map: incomplete_ts)
- Applied the Area of Applicability (Meyer 2022) to sort out pixels outside of the feature space; basically where the model had not the same values for pixels as in the available training data

 *Be aware that the map is only validated with the training data itself, an independent validation with other data sources remains missing*

 References
- Kuhn, M. (2022). Classification and Regression Training. 6.0-93.
- Meyer, H., Reudenbach, C., Hengl, T., Katurji, M., & Nauss, T. (2018). *Improving performance of spatio-temporal machine learning models using forward feature selection and target-oriented validation*. Environmental Modelling and Software, 101, 1-9. https://doi.org/10.1016/j.envsoft.2017.12.001
- Meyer, H., Milà, C., & Ludwig, M. (2022). *CAST: 'caret' Applications for Spatial-Temporal Models*. 0.7.0.
- Ververidis, D., & Kotropoulos, C. (2005). *Sequential forward feature selection with low computational cost*. 2005 13th European Signal Processing Conference.
- Waser, L., Fischer, C.,Wang, Z., & Ginzler, C. (2015). *Wall-to-Wall Forest Mapping Based on Digital Surface Models from Image-Based Point Clouds and a NFI Forest Definition*. Forests, 6, 12, 4510–4528.
- Wright, M. N., & Ziegler, A. (2017). *ranger: A Fast Implementation of Random Forests for High Dimensional Data in C++ and R*. Journal of Statistical Software, 77(1), 1-17. https://doi.org/doi:10.18637/jss.v077.i01

forest

display_name: forest

map

display_name: map

remote-sensing

display_name: remote-sensing

switzerland

display_name: switzerland

tree-species

display_name: tree-species

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Tree species map of Switzerland


en: eddy-covariance-measurements mass-flux turbulence meteorological-data large-eddy-simulations antarctica micro-rain-radar drifting-snow blowing-snow

en: Measurement data from snow particle counter at MRR site

en: Near-surface observations of drifting snow from a Snow Particle Counter (SPC) installed at the location of the Micro Rain Radar.

en: Measurement data from micro-meteorological station

en: Automatic in-situ measurements of micro-meteorology and snow transport

en: Measurement data from Micro Rain Radar (MRR)

en: Remote sensing data of blowing snow from a Micro Rain Radar (MRR).

en: Simulation data for a situation with negligible snow transport

en: Results from two LES-LSM simulations called NoDrift_1 and NoDrift_2, which reproduce the conditions observed at the S17 site on 12th January 2019, 05:40 to 05:50 UTC.

en: Simulation data for a situation with significant snow transport

en: Data from two LES-LSM simulations called Drift_1 and Drift_2, which reproduce the conditions observed at the S17 site on 11th January 2019, 00:40 to 00:50 UTC.

en: Source code of the large-eddy simulations coupled with a Lagrangian stochastic model (LES-LSM), available on GitLab.

en: Readme

en: Meta data

en:
This dataset contains measurement and simulation data. The measurements characterize the standard meteorology, turbulence, and snow transport at the S17 site near Syowa Station in East Antarctica during an expedition in austral summer 2018/2019. Large-eddy simulations with sublimating particles provide additional insight into the latent and sensible heat exchange between snow and air in two example situations observed at the S17 site.

A part of the measurement data was recorded by an automatic measurement station from 10th January 2019 to 26th January 2019. This measurement station was equipped with standard meteorological sensors, a three-dimensional ultrasonic anemometer, an open-path infrared gas analyzer, a snow particle counter, an infrared radiometer for measurements of the surface temperature, and a sonic ranging sensor measuring changes in snow surface elevation.

At a horizontal distance of approximately 500 m, a Micro Rain Radar (MRR) was installed in a tilted configuration with an elevation angle of 7° for remote sensing of blowing snow between 25th December 2018 and 24th January 2019. In addition, near-surface in-situ measurements of snow transport were performed at the location of the MRR by deploying a snow particle counter from 27th December 2018 to 24th January 2019.

The simulations cover a 18 x 18 x 6 m³ domain and reproduce the steady-state conditions during a 10-min interval with significant snow transport and another 10-min interval with negligible snow transport. We provide the model source code and the post-processed simulation data, i.e., horizontally averaged quantities as a function of height and time.

antarctica

display_name: antarctica

blowing-snow

display_name: blowing-snow

drifting-snow

display_name: drifting-snow

eddy-covariance-measurements

display_name: eddy-covariance-measurements

large-eddy-simulations

display_name: large-eddy-simulations

mass-flux

display_name: mass-flux

meteorological-data

display_name: meteorological-data

micro-rain-radar

display_name: micro-rain-radar

turbulence

display_name: turbulence

en: Meteorology and snow transport at S17 near Syowa, Antarctica, in austral summer 2018/2019


en: water-budget water-isotopes soil-solution forest-ecosystems xylem-water

en: Water isotope signatures and gravimetric water content of xylem samples.

en: Water isotopic signature of deposition samples.

en: Water isotope signatures of soil solution samples.

en: Overview of most deposition water isotopic signatures.

en: Column descriptions for soil solution, deposition, xylem and bulk soil samples.

en: Overview of most bulk soil water isotopic signatures.

en: Overview of most soil solution water isotopic signatures.

en: Overview of most xylem water isotopic signatures.

en: Water isotope signatures and gravimetric water content of bulk soil samples.

en:
The isotope composition of different forest water pools was analyzed at 10 sites of the Long-term Forest Ecosystem Research programme in 2021 and 2022. The sampling was done during the vegetation season and included fortnightly xylem water samples taken by stem increment cores and each year 3 bulk soil water sampling campaigns (in April, June, September of 2021 and 2022). Both sample types were cryogenically extracted at WSL and analyzed on a Picarro 2140 with Micro-Combustion-Module. Gravimetric water content in both sample types was computed based on pre-and post-extraction weights. In addition to xylem and bulk soil waters, we analyzed the isotope composition of soil solution from a suction cup lysimeters in three soil depths 0, 15, 50, 80 cm and precipitation from samplers below the canopy and outside of the forest, all collected fortnightly from collection periods of varying length (longest from 2017-2022).
Precipitation samples are further described [here](https://www.doi.org/10.16904/envidat.lwf.15). Lysimeter samples are described further [here](https://www.doi.org/10.16904/envidat.lwf.28).

forest-ecosystems

display_name: forest-ecosystems

soil-solution

display_name: soil-solution

water-budget

display_name: water-budget

water-isotopes

display_name: water-isotopes

xylem-water

display_name: xylem-water

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Water isotope signatures in Swiss forest ecosystems in 2021 and 2022


en: airborne-laser-scanning snow-distribution canopy-height forest-structure snow-depth

en: Snow depth maps

en: Snow depth maps from two snow-on flights at each of the three field areas Davos (March 20th and 31st 2017), Engadien (March 20th and 31st, 2017) and Grand Mesa (February 8th and 16th, 2017)

mimetype: application/zip

en: Terrain elevation maps

en: Digital elevation model computed from snow-off flights for each of the field areas Davos, Engadine and Grand Mesa

en: Canopy height maps

en: Canopy height maps of each of the three field areas Davos, Engadine and Grand Mesa

en: Readme

mimetype: text/plain

en:
This dataset includes snow depth, canopy height and terrain elevation maps of forest stands in the Grisons (CH) and at Grand Mesa (CO,USA) derived from airborne lidar. Data were acquired i) within a pilot mission of NASA's Airborne Snow Observatory in the Swiss Alps in March 2017 and ii) during NASA’s SnowEx campaign at Grand Mesa in February 2017. Snow depth maps are available for two dates separated by approx.1 week, and include an area of ca. 0.5km2 for each of the three sites Davos, Engadine and Grand Mesa.
All data were presented and analyzed in the publication 'Revisiting Snow Cover Variability and Canopy Structure within Forest Stands: Insights from Airborne Lidar Data' (Mazzotti et al., 2019, WRR, doi: 10.1029/2019WR024898). This publication must be cited when using this dataset.

Paper Citation:
 > _Giulia Mazzotti; William Ryan Currier; Jeffrey S. Deems; Justin M. Pflug; Jessica D. Lundquist; Tobias Jonas (2019). Revisiting Snow Cover Variability and Canopy Structure Within Forest Stands: Insights From Airborne Lidar Data. Water Resources Research, 55, 6198– 6216, [doi: 10.1029/2019WR024898](https://doi.org/10.1029/2019WR024898)._

airborne-laser-scanning

display_name: airborne-laser-scanning

canopy-height

display_name: canopy-height

forest-structure

display_name: forest-structure

snow-depth

display_name: snow-depth

snow-distribution

display_name: snow-distribution

en: ALS-based snow depth and canopy height maps from flights in 2017 (Grisons, CH and Grand Mesa, CO)


maintainer: Virginie Marques

en: plankton biodiversity fish marine fjord environmental-dna dna-metabarcoding

en: Code, data and figures

en: Here there are all the data and code to reproduce the figures and analysis presented in the paper, with a README.md file

en: Metabarcoding data

en: Raw metabarcoding data for both primers (teleo and 18S) and corresponding file to perform the demultiplexing and primer trimming

en:
This dataset contains the raw environmental DNA data associated with the publication *Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord* in the journal Polar Biology (2023).

 Methods

**Sampling**
We sampled the Lilliehöök fjord on the west coast of Spitsbergen (Svalbard, Norway) over 3 days from 3 to 5 of August 2021. Samples were taken from the glacier front up to the fjord mouth of the Krossfjorden system, around 30 km long, after the Lilliehöök fjord merged with the mouth of Möller fjord. The fjord’s maximum depth has been recorded at 373 m (Svendsen et al. 2002) and has no sill at its entrance, thereby facilitating water exchange with the open ocean of the West Spitsbergen Current. We used a research vessel to sample 5 sites for a total of 15 samples, sampling 3 depths per site (3-m, chlorophyll a maximum and 85-m, unless sea floor was shallower). Shallow and intermediate samples between 3-m and 12-m represent ~35-L of water filtered in-situ using long tubing and a peristaltic pump, and all other deeper samples were taken from a total of 3 Niskin bottles (General Oceanics), representing 22-L of water sampled per sample. Water was filtered through a VigiDNA filtration capsule (SPYGEN) with a 0.20-µm pore size using an Athena peristaltic pump (Proactive Environmental Products, Bradenton, Florida) with a flow rate of ~1-L/min. Each sample was handled with single use tubing and gloves.

**Molecular**
To perform the amplification, we used two sets of primers: teleo (forward: ACACCGCCCGTCACTCT, reverse: CTTCCGGTACACTTACCATG; Valentini et al. 2016) and the universal eukaryotic 1389F/1510R primer pair, amplifying the V9-18S rDNA gene (Amaral-Zettler et al. 2009) (forward: TTGTACACACCGCCC, reverse: CCTTCYGCAGGTTCACCTAC).

 Data content:

+ Metabarcoding data: This zip file contains the 2 sequencing libraries filtered to only retain the samples used in the present study.
+ Code, data and figure: This zip file contains all data and code to reproduce the figures and the analysis in the study, with an associated README explaining the content of each folder.

 Additional informations
For more details, please see the Methods in the associated publication: DOI: 10.1007/s00300-023-03187-9.

biodiversity

display_name: biodiversity

dna-metabarcoding

display_name: dna-metabarcoding

environmental-dna

display_name: environmental-dna

fish

display_name: fish

fjord

display_name: fjord

marine

display_name: marine

plankton

display_name: plankton

en: Data: Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord


maintainer: Ueli Reber

en: biodiversity environmental--policy switzerland policy-documents policy-analysis bgb text-corpus

en: Replication files

en:
 Introduction

The ZIP file contains all data and code to replicate the analyses reported in the following paper.

Reber, U., Fischer, M., Ingold, K., Kienast, F., Hersperger, A. M., Grütter, R., & Benz, R. (2022). Integrating biodiversity: A longitudinal and cross-sectoral analysis of Swiss politics. *Policy Sciences*. [https://doi.org/10.1007/s11077-022-09456-4](https://doi.org/10.1007/s11077-022-09456-4)

If you use any of the material included in this repository, please refer to the paper. If you use (parts of) the text corpus, please also refer to the sources used for its compilation listed below. The content of the texts may not be changed.

 Data folder

The data folder contains the following files.

* _corpus.parquet_: Text corpus of Swiss policy documents
* _dict_de.csv_: Biodiversity dictionary (German)
* _dict_fr.csv_: Biodiversity dictionary (French)
* _dict_it.csv_: Biodiversity dictionary (Italian)
* _topic_labels.csv_: labels/codes for policy sectors
* _topics.csv_: labels/codes for policy sectors

The corpus and the dictionary were compiled by the authors specifically for this project. The labels/codes for policy sectors are based on the [coding scheme](http://ws-old.parlament.ch/affairs/topics) of the Swiss Parliament.

 Text corpus

The text corpus consists of 439,984 Swiss policy documents in German, French, and Italian from 1999 to 2018. The corpus was compiled from the following source between 2020-10-01 and 2021-01-31.

* Transcripts and parliamentary businesses (e.g. questions, motions, parliamentary initiatives) via the [Web Services (WS)](https://www.parlament.ch/de/%C3%BCber-das-parlament/fakten-und-zahlen/open-data-web-services) provided by the Swiss Parliament
* The official compilation of federal legislation ("Amtliche Sammlung", AS) via [opendata.swiss](https://opendata.swiss/de/dataset/official-compilation-of-federal-legislation-bs-as-1947-2018) provided by the Swiss Federal Archives (SFA)
* The federal gazette ("Bundesblatt") via [fedlex.admin.ch](https://www.fedlex.admin.ch/de/fga/index)
* Decisions of federal courts via [entscheidsuche.ch (ES)](https://entscheidsuche.ch/)

The corpus is stored in a single data frame to use with R saved as [PARQUET](https://parquet.apache.org/) file (corpus.parquet). The data frame has the following structure.

* _text_id_: Unique identifier for each text (source information as prefix, e.g. "t_")
* _doc_type_: Document type (see coding scheme below)
* _branch_: Government branche (1 legislative, 2 executive, 3 judicative)
* _stage_: Stage of policy process (1 drafting, 2 introduction, 3 interpretation)
* _year_: Year of publication
* _topic_: Policy sector (coding scheme in separate file in data folder)
* _lang_: Language (de, fr, it)
* _text_: Text

The following list contains the coding scheme for the doc_type variable.

* 101: Federal gazette // Draft for public consultation ("Vernehmlassungsverfahren")
* 102: Federal gazette // Explanation of draft for parliament ("Botschaft")
* 103: Federal gazette // Strategy, action plan
* 104: Federal gazette // Federal council decree ("Bundesratsbeschluss")
* 105: Federal gazette // (Simple) Federal decree ("(Einfacher) Bundesbeschluss")
* 106: Federal gazette // General decree ("Allgemeinverfügung")
* 107: Federal gazette // Treaty ("Übereinkommen")
* 108: Federal gazette // Treaty ("Abkommen")
* 109: Federal gazette // Draft for parliament ("Entwurf")
* 110: Federal gazette // Report ("Bericht")
* 111: Federal gazette // Report of parliamentary comission ("Bericht")
* 112: Federal gazette // Report of federal council ("Bericht")
* 201: Parl. businesses // Submitted text
* 202: Parl. businesses // Reason text
* 203: Parl. businesses // Federal council response
* 204: Parl. businesses // Initial situation
* 205: Parl. businesses // Proceedings
* 301: Parl. transcripts // Speech of MP
* 302: Parl. transcripts // Speech of federal council
* 401: Federal legislation // Legal text of the official compilation (law, ordinances, etc.)
* 501: Court decisions // Federal Supreme Court
* 502: Court decisions // Federal Criminal Court
* 503: Court decisions // Federal Administrative Court

 Code folder

The code folder contains all R code for the analyses. The files are numbered chronologically.

* _1_classifier_training.R_: Training of classifiers for classification of policy sectors
* _2_classifier_application.R_: Classification of documents in corpus
* _3_dictionary_application.R_: Biodiversity indexing of documents in corpus
* _4_stm_truncation.R_: Truncation of indexed documents to keep only relevant parts
* _5_stm_translation.R_: Translation of FR and IT documents to DE
* _6_stm_model.R_: Preprocesssing and structural topic model
* _7_plots.R_: Plots and numbers as included in the paper

The code/functions folder contains custom functions used in the scripts, e.g. to support topic model interpretation.

Package versions and setup details are noted in the code files.

 Contact

Please direct any questions to Ueli Reber (ueli.reber@eawag.ch).

bgb

display_name: bgb

environmental--policy

display_name: environmental--policy

policy-analysis

display_name: policy-analysis

policy-documents

display_name: policy-documents

switzerland

display_name: switzerland

text-corpus

display_name: text-corpus

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Replication files for "Integrating biodiversity: A longitudinal and cross-sectoral analysis of Swiss politics"


maintainer: Sebastian Schlögl

en: atmosphere snow stable-boundary-layer turbulent-sensible-heat-fluxes atmospheric-turbulence

en: Turbulence data WFJ07

en: upper sensor

en: Turbulence data GR00

en: sensor in 2 m height

en: sensor in 1 m height

en: Turbulence data AA00

en: sensor in 0.2 m height

en: sensor in 25 m height

en: Turbulence data PM07

en: NWW

en: lower sensor

en: SEE

en: Turbulence data WFJ11

en:
We used five different atmospheric turbulence datasets from four test sites, with these sites showing differences in their topographical characteristics. We chose one typical alpine test site with high topographical complexity (Weissfluhjoch, Davos, Switzerland) and three test sites consisting of one glacier site (Plaine Morte, Crans-Montana, Switzerland) and two polar sites (Greenland and Antarctica) representing a quasi-ideal site with homogeneous surface and quasi infinite fetch in all directions.
The turbulent sensible heat flux was calculated using the eddy-covariance method. Note that the sonic temperature fluctuations have been converted into virtual temperature fluctuations.
Three-dimensional wind velocity and air temperature were processed using a linear detrending (Rannik and Vesala, 1999) and a planar fit approach (Massmann and Lee, 2002) to rotate the coordinate system. Air temperature, relative humidity and air pressure from weather stations were used to calculate air properties, which are required for the data processing. The weather stations are located in the immediate vicinity of the turbulence tower and are affected by the same air masses. Turbulence data were averaged to 30-min intervals, whilst changing to a 15-min time interval marginally affects the heat fluxes at the Weissfluhjoch test site (Mott et al., 2011). Note that we define a negative sensible heat flux as being directed towards the snow surface and a positive sensible heat flux as being directed upwards.
The selected datasets and corresponding test sites are briefly introduced below:

Weissfluhjoch 2007 (WFJ07): A vertical set-up of two three-dimensional ultrasonic anemometers (CSAT3, Campbell Scientific, Inc.) was used at the traditional field site Weissfluhjoch (2540 m asl.) to measure three-dimensional wind velocity and air temperature at a frequency of 20 Hz. The sensors were mounted 3 m and 5 m above the ground and provided reliable data for 50 days between 11 February 2007 and 24 April 2007. Further information on the field campaign can be found in Stössel et al. (2010) and Mott et al. (2011).

Weissfluhjoch 2011-13 (WFJ11): Three-dimensional wind velocity and air temperature were recorded at 5 m above the ground at a frequency of 10 Hz with a three-dimensional ultrasonic anemometer (CSAT3). The analysis was conducted for data obtained between February and March in the years 2011-13.

Plaine Morte 2007 (PM07): Two three-dimensional ultrasonic anemometers (CSAT3) were installed on a horizontal boom facing opposite directions (west-north-west vs. east-south-east) at 3.75 m above the ground to measure air temperature and three-dimensional wind velocity at 20 Hz. The data were collected at the almost flat field site on the Plaine Morte glacier (2750 m asl.) near Crans-Montana, Switzerland from February to April 2007. High quality meteorological data were additionally recorded and used to force the model. A detailed description about the set-up at the Plaine Morte glacier can be found in Huwald et al. (2009) and Bou-Zeid et al. (2010).

Greenland 2000 (GR00): High-frequency three-dimensional ultrasonic anemometer measurements (CSAT3) were recorded at 50 Hz at the Summit Camp (72.3 °N, 38.8 °W, 3208 m asl.) located on the northern dome of the Greenland ice sheet. Data were collected at 1 m and 2 m above the snow surface during summer in 2000 and 2001. Additionally, meteorological measurements were obtained for the post processing and used to force the model. More information about the field campaign can be found in Cullen et al. (2007, 2014).

Antarctica 2000 (AA00): A set-up of three vertical three-dimensional ultrasonic anemometers (DA-600, Kaijo Denki) were installed at Mizuho Station (70°42' S, 44°20' E, 2230 m asl.) in Eastern Antarctica at 0.2, 1 and 25 m and recorded turbulence data at a frequency of 100 Hz from October to November 2000. Longwave and shortwave radiation, relative humidity, air and snow surface temperature were additionally measured and used to force the model. More information about the field campaign can be found in Nishimura and Nemoto (2005).

atmosphere

display_name: atmosphere

atmospheric-turbulence

display_name: atmospheric-turbulence

snow

display_name: snow

stable-boundary-layer

display_name: stable-boundary-layer

turbulent-sensible-heat-fluxes

display_name: turbulent-sensible-heat-fluxes

en: How do stability corrections perform in the stable boundary layer over snow?


en: snow-stratigraphy avalanche snow wet-snow-avalanche dry-snow-avalanche climate-projections climate-change snow-instability

en: Climate scenarios .smet

en: contains one .smet file per combination of station, climate model chain and RCP scenario. Each .smet file contains the downscaled meteorological data (time span 1.9.1981-31.8.2099) that was used to drive the SNOWPACK simulations.

en: Projections of avalanche activity

en: contains one file per IMIS station that indicates the daily probability for the occurrence of dry- or wet-snow avalanches in the vicinity of the respective station for each day during the time period 1.12.1981-31.05.2099 (months December to May) and all climate model chains and RCP scenarios.

en: SNOWPACK settings

en: contains .ini and .sno file indicating the settings used to drive SNOWPACK with the climate scenarios

en:
This data set includes 21st century projections of dry- and wet-snow avalanche activity for seven sites in the Swiss Alps as well as the downscaled climate scenarios and SNOWPACK configuration files used to produce these projections. The methods used to produce these data are described in the research article:
Mayer, S., Hendrick, M., Michel, A., Richter, B., Schweizer, J., Wernli, H., and van Herwijnen, A.: Changes in snow avalanche activity in response to climate warming in the Swiss Alps, EGUsphere, 2024, 1-32, https://doi.org/10.5194/egusphere-2024-1026, 2024.
We used downscaled climate projections to drive the snow cover model SNOWPACK and evaluated future dry- and wet-snow avalanche occurrences in the vicinity of seven automatic weather stations from the IMIS network using machine learning models trained with observed records of avalanche activity. Projections are available for three different emission scenarios (Representative Concentration Pathways, RCP2.6, RCP4.5 and RCP8.5) and eight climate model chains from the CH2018 ensemble. The output of the model chain is given by a daily probability for dry- or wet-snow avalanche occurrences. These probabilities can then be used to classify a day as a dry- and wet-snow avalanche day (AvD) or non-avalanche day.

avalanche

display_name: avalanche

climate-change

display_name: climate-change

climate-projections

display_name: climate-projections

dry-snow-avalanche

display_name: dry-snow-avalanche

snow-instability

display_name: snow-instability

snow-stratigraphy

display_name: snow-stratigraphy

wet-snow-avalanche

display_name: wet-snow-avalanche

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: picea-abies soil forest nitrogen face co2

en: Collection of soil solution

en: Soil solution collected by suction cups

en: Water analyses

en: Analyses of water, especially soil solution

en: Soil C and N

en: Analyses of C, N and their stable isotopes in the soil, and soil pH

en: Collection points

en: Collection points under the trees

en: Resin bags

en: Ammonium, nitrate and their 15N in resin bags

en: Gross N mineralisation and nitrification

en: Gross rates of N mineralisation and nitrification (15N dilution)

en: Data obtained in the free-air CO2 enrichment (FACE) experiment at Hofstetten, NW Switzerland, between 2009 and 2016. This dataset contains analyses of the soil solution throughout the experiment, especially for nitrate, as well as different analyses done at the end of the experiment: ammonium and nitrate captured by ion-exchange resin bags and extracted from soil cores, gross N mineralisation and nitrification measured by isotope dilution.

face

display_name: face

forest

display_name: forest

nitrogen

display_name: nitrogen

picea-abies

display_name: picea-abies

soil

display_name: soil

en: Nitrogen availability under trees exposed to CO2 enrichment (FACE)


maintainer: Alexis Shakas

en: irrigation pinus-sylvestris drone-data drought ert

en: This .csv file contains the soil water potential data for all treatments (irrigation, irrigation-stop and control) and for the whole year of 2022. The data is given as a mean value and with an upper and lower uncertainty bound, given from the manufacturer. The depth of the sensor is given in cm, and the measured values are in units of kPa.

en: This zip file contains all raw and processed data for the electrical resistivity and drone campaigns that took place in Pfynwald, 2022

en:
This collection of datasets consists of various measurements taken during the year 2022 in Pfynwald. It combines 2 electrical resistivity transects which were monitored in May and July, before and after the irrigation season. The transects transverse all treatments (irrigation, control, irrigation stop). Each transect was repeated twice during the day for a period of 3 days to a week.
In addition there are raw and post-processed drone images (and resulting PRI maps), which were used to compare the below ground responses (from resistivity) to the above ground (crown) stress.
Here, the raw data is stored and a link to a git project is provided where python code is stored to reproduce all the results the published manuscript: "Does optimality partitioning theory fail for belowground traits? Insights from geophysical imaging of a drought-release experiment in a dry Scots Pine forest", New Phytologist, Shakas et al., 2024. The in-depth explanations from each processing step are found in the code (git project).

drone-data

display_name: drone-data

drought

display_name: drought

ert

display_name: ert

irrigation

display_name: irrigation

pinus-sylvestris

display_name: pinus-sylvestris

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Pfynwald Geoelectric Experiment 2022


en: meteoswiss high-resolution complex-terrain cosmo-wrf numerical-simulation

en: WRFrun

en: Scripts to run COSMO-WRF simulation (see Section 6 in COSMOWRFdocumentation.pdf)

en: StaticData

en:
Scripts to process geographical/static data (see Section 3 in COSMOWRFdocumentation.pdf).
- ascii_to_bin_landuse.f90
- ascii_to_bin_soiltype.f90
- ascii_to_bin_topo_wgs84_ws2sf1.f90
- see_slopes.ncl
- soiltype_writing.py
- toposmooth_wgs84_cosmobound.ncl
- write_geogrid.o

en: WPSrun

en: Scripts to run the WRF pre-processing (WPS) for COSMO-WRF simulation (see Section 5 in COSMOWRFdocumentation.pdf)

en: COSMO-WRF documentation v1.0

media_type: application/pdf

en:
Gerber, Franziska; Sharma, Varun (2018). Running COSMO-WRF on very-high resolution over complex terrain. EnviDat. doi:10.16904/envidat.35

Documentation about the procedure to run COSMO-WRF

format: PDF

mimetype: application/pdf

en: WPSSetup

en: Scripts that need to be changed to compile WPS (see COSMOWRFdocumentation.pdf, Section 4)

en: MeteorologicalData

en: Scripts to process meteorological data (see Section 2 in COSMOWRFdocumentation.pdf).

en: Postprocessing

en: Postprocessing scripts to map WRF output on swiss coordinates (see Section 7 in COSMOWRFdocumentation.pdf)

en: This is a technical documentation of the procedure to run the Weather Research and Forecasting (WRF) model over complex alpine terrain using Consortium for Small-Scale Modeling (COSMO) reanalysis by the Federal Office of Meteorology and Climatology (MeteoSwiss) as initial and boundary conditions (COMSO-WRF). The setup is adapted for very high resolution simulations based on COSMO-2 (2.2 km resolution) reanalysis. This document gives an overview over steps to setup COSMO-WRF and adaptations needed to run COSMO-WRF. Additionally, the calculation of precipitation rate at a horizontal plane and remapping COSMO-WRF output on Swiss coordinates are documented.

complex-terrain

display_name: complex-terrain

cosmo-wrf

display_name: cosmo-wrf

high-resolution

display_name: high-resolution

meteoswiss

display_name: meteoswiss

numerical-simulation

display_name: numerical-simulation

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


maintainer: Jonas Stillhard

en: forest-dynamics fagus-sylvatica primeval-beech-forest long-term-data-sets carpathian-biosphere-reserve stand-inventory-data forest permanent-forest-plot-data dem forest-structure

en: Dataset

en: Data description

en: Available online on publishers website

en:
In 2000, a permanent forest plot of 10 ha has been established in the core zone of the primeval beech forest of Uholka.
 All living and dead trees with a diameter at breast height (DBH) ≥ 60 mm were identified to species, DBH measured, stems tagged and mapped.
Since then, the plot has been remeasured in 2005, 2010, and 2015. In total, 4,820 individual trees were measured with 14,116 individual measurements throughout all four inventories.
In spring 2018, an Airborne Laser Scan was carried out, covering the Uholka‐Shyrokyi Luh forest. This data set allows us to derive a high‐resolution digital elevation model (DEM) of the plot area.
The data set allows for important insights into the development and the spatial and temporal dynamics of primeval beech forests.

carpathian-biosphere-reserve

display_name: carpathian-biosphere-reserve

dem

display_name: dem

fagus-sylvatica

display_name: fagus-sylvatica

forest-dynamics

display_name: forest-dynamics

forest-structure

display_name: forest-structure

long-term-data-sets

display_name: long-term-data-sets

permanent-forest-plot-data

display_name: permanent-forest-plot-data

primeval-beech-forest

display_name: primeval-beech-forest

stand-inventory-data

display_name: stand-inventory-data

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Stand inventory data from the 10‐ha forest research plot in Uholka, Ukraine


maintainer: Roman Zweifel

en: carbon-dioxide seehornwald forest-function eddy-covariance-measurements biomass ecosystem-functioning picea-abies atmospheric-conditions metadata forest-canopy forest-biomass davos automated-monitoring water-relations carbon-sequestration co2 forest-area forest icp-forests carbon-cycle forest-characteristics ilter lwf dbh forest-dynamics tree-stem eddy-covariance carbon-storage climate-growth flux treenet open-data forest-ecosystems twd subalpine climate-change dendrometer stem-growth ecophysiology forest-monitoring sap-flow icos

en: Readme

en: Readme file contains the list of material that comes with the download

en: Collection of files with information about the research site Seehornwald Davos CH-DAV

en: Site description of the Seehornwald Davos (CH-DAV) research site. The material provided offers information on the biomass and growth of trees in CH-DAV, including supporting materials such as maps, geolocations and analyses. CH-DAV is part of networks such as ICOS, LWF, TreeNet, ICPForests and is dedicated to forest monitoring and research.

atmospheric-conditions

display_name: atmospheric-conditions

automated-monitoring

display_name: automated-monitoring

biomass

display_name: biomass

carbon-cycle

display_name: carbon-cycle

carbon-dioxide

display_name: carbon-dioxide

carbon-sequestration

display_name: carbon-sequestration

carbon-storage

display_name: carbon-storage

climate-change

display_name: climate-change

climate-growth

display_name: climate-growth

davos

display_name: davos

dbh

display_name: dbh

dendrometer

display_name: dendrometer

ecophysiology

display_name: ecophysiology

ecosystem-functioning

display_name: ecosystem-functioning

eddy-covariance

display_name: eddy-covariance

eddy-covariance-measurements

display_name: eddy-covariance-measurements

flux

display_name: flux

forest

display_name: forest

forest-area

display_name: forest-area

forest-biomass

display_name: forest-biomass

forest-canopy

display_name: forest-canopy

forest-characteristics

display_name: forest-characteristics

forest-ecosystems

display_name: forest-ecosystems

forest-function

display_name: forest-function

forest-monitoring

display_name: forest-monitoring

icos

display_name: icos

icp-forests

display_name: icp-forests

ilter

display_name: ilter

lwf

display_name: lwf

metadata

display_name: metadata

open-data

display_name: open-data

picea-abies

display_name: picea-abies

sap-flow

display_name: sap-flow

seehornwald

display_name: seehornwald

stem-growth

display_name: stem-growth

subalpine

display_name: subalpine

tree-stem

display_name: tree-stem

treenet

display_name: treenet

twd

display_name: twd

water-relations

display_name: water-relations

en: Site description Davos Seehornwald CH-DAV


en: bacteria soil soil-chemistry grassland fungi soil-biodiversity restoration soil-biology plants biodiversity nematodes topsoil-removal

en: Networks

en:
Treatment	Treatment groups; Y.4-18 = restored grasslands; Initial = intensively managed grasslands; Target = species-rich semi-wet to semi-dry grasslands
Correlation	non-parametric Spearman rank correlations
Vertex.1+2	Comparison between network components; N.pool = total soil nitrogen pool [kg ha-1 12 cm-1]; Corg.pool = soil organic carbon pool [kg ha-1 12 cm-1], pH = soil pH [CaCl2]; BD = bulk density [g cm-3]; FC = field capacity [%]
	PCoA 1 + 2 biotic communities [Veg = vegetation; Nem = nematoda; Fun = fungi; Prok = prokaryota]
Type	Interactions type; A.A = abiotic.abiotic; A.B = abiotic.biotic; B.B = biotic.biotic

en: Soil properties

en:
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)
N.pool	Soil nitrogen pool (June 2017); corrected for bulk density and 12 cm sampling depth [kg ha-1 12cm-1]
Corg.pool	Soil organic carbon pool (June 2017); corrected for bulk density and 12 cm sampling depth [kg ha-1 12cm-1]
pH	soil pH [CaCl2]
BD	Bulk density [g cm-3]
FC	Field capacity [%]
Veg.1	principle coordinate axis 1 (vegetation)
Veg.1	principle coordinate axis 2 (vegetation)
Nem.1	principle coordinate axis 1 (nematoda)
Nem.2	principle coordinate axis 2 (nematoda)
Fun.1	principle coordinate axis 1 (fungi)
Fun.2	principle coordinate axis 2 (fungi)
Prok.1	principle coordinate axis 1 (prokaryota)
Prok.2	principle coordinate axis 2 (prokaryota)
Veg.H	Shannon diversity (vegetation)
Nem.H	Shannon diversity (nematoda)
Fun.H	Shannon diversity (fungi)
Prok.H	Shannon diversity (prokaryota)

en: Vegetation data

en:
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)
column I-LW	Plant abundance per species (in total 327 plant species) expressed as cover percentage estimation according to van der Maarel (vdM 1979; 7 classes: 1-7); nomenclature according to Lauber & Wagner (1996)

en: Nematode data

en:
Sample.data
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)

Taxonomy
ASV.ID	unit number.letter code per amplicon sequence variant (in total 904)
Taxonomic rank	Phylum, Class, Order, Family, Genus, Species

Abundance
columns	Plot.ID (see Sample.data)
rows	ASV.ID (see Taxonomy)

en: Distance to target results

en:
Community	biotic community (vegetation, nematoda, fungi, prokaryota)
Treatment	Treatment groups; Y.4-30= restored grasslands (time since restoration); Initial=intensively managed grasslands (I)
Comparison	within- or between-community Bray-Curtis dissimilarity distance comparison
Label	within-community distances of initial/restored grasslands: treatment abbreviation; between-communities distances of initial/restored-to-target grasslands: treatment abbreviation plus Target (T; species-rich grasslands)
mean	Mean distance to Target (6 plots per treatment group)
sd	Standard deviation of distances to Target (6 plots per treatment group)

en: Ecosystem coupling_interactions

en:
Treatment	Treatment groups; Y.4-18 = restored grasslands; Initial = intensively managed grasslands; Target = species-rich semi-wet to semi-dry grasslands
Type	Interactions type; A.A = abiotic.abiotic; A.B = abiotic.biotic; B.B = biotic.biotic
Correlation	non-parametric Spearman rank correlations between biotic and abiotic parameters (ecological interactions)

en: Fungi data

en:
Sample.data
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)

Taxonomy
OTU.ID	consecutive numbers for operational taxonomic units (OTUe 1-7794)
Taxonomic rank	Domain, Phylum, Class, Order, Family, Genus, Species

Abundance
columns	Plot.ID (see Sample.data)
rows	OTU.ID (see Taxonomy)

en:
This dataset contains all data, on which the following publication below is based.

Paper Citation:

_Resch, M.C., Schütz, M., Ochoa-Hueso, R., Buchmann, N., Frey, B., Graf, U., van der Putten, W.H., Zimmermann, S., Risch, A.C. (in review). Long-term recovery of above- and belowground interactions in restored grassland after topsoil removal and seed addition. Journal of Applied Ecology_

Please cite this paper together with the citation for the datafile.

Study area and experimental design
The study was conducted in and around two nature reserves, Eigental and Altläufe der Glatt, which were located approximately 5 km apart (47°27´ to 47°29´ N, 8°37´ to 8°32´ E, 417 to 572 m a.s.l., Canton of Zurich, Switzerland; Figure S1 and S2, Table S1). Mean annual temperature and precipitation are 9.8 ± 0.6 °C and 990 ± 168 mm (Kloten climate station 1988-2018; MeteoSchweiz, 2019). TFor this study, we used a space-for-time approach based on eight restoration sites that were between 3 and 32 years old. We measured recovery and restoration success by comparing the restored grasslands with intensively managed and semi-natural grasslands. Using a space-for-time approach requires high similarities in historical properties of the site, such as soil conditions and management regimes, to assure that temporal processes are appropriately represented by spatial patterns (Walker et al., 2010). This was the case in our study. The restored sites had similar soil conditions (i.e., soil type, structure, water availability) as the targeted semi-natural grasslands, while they shared the same agricultural legacy with intensively managed grasslands, i.e., biomass harvest and fertilization (manure and/or slurry) three to five times a year as well as tillage. We randomly established three 5 m x 5 m (25-m2) plots for plant identification and three 2 m x 2 m (4-m2) subplots for soil biotic and abiotic data collection at least 2 m away from the 25-m2 plots in each restoration site. Sites of similar age were grouped into four age classes: Y.4 (3 & 4 years after restoration), Y.18 (17 & 19 years), Y.24 (23 & 25 years), and Y.30 (27 & 32 years). Six intensively managed (Initial) and six semi-natural grassland (Target) sites complemented the experimental set-up, for a total of 36 plots. All plots were sampled under similar conditions, i.e., day of the year, air temperature, soil moisture, and time since last rain event, in June/July 2017 (intensively managed and semi-natural plots) and 2018 (restored plots).

Collection of plants and selected soil biota data
Plant species cover (in %) was visually estimated in each 25-m2 plot in mid-June (Braun-Blanquet, 1964; nomenclature: Lauber & Wagner, 1996). We calculated Shannon diversity and assessed plant community structure. We included soil microbial (fungi, procaryotes) and nematodes in our study as they represent the majority of soil biotic diversity and abundance (Bardgett & van der Putten, 2014), cover various trophic levels of the soil food web (Bongers & Ferris, 1999), and play key roles in soil functioning and ecosystem processes (Bardgett & van der Putten, 2014). In particular, soil nematodes were found to be well suited belowground indicators to evaluate recovery/development after restoration (e.g. Frouz, et al. 2008; Kardol et al., 2009; Resch et al., 2019). We randomly collected ten soil cores (2.2 cm diameter x 12 cm depths; sampler from Giddings Machine Company, Windsor, USA) in the 4-m2 subplots to assess soil nematode and microbial (fungal, prokaryotic) diversities and community structures. For soil nematodes, eight of the soil cores were combined and gently homogenized, placed in coolers and stored at 4 °C and transported to the laboratory (Netherlands Institute of Ecology, NIOO, Wageningen, Netherlands) within three days after collection. Free-living nematodes were extracted from 200 g of fresh soil using Oostenbrink elutriators (Oostenbrink, 1960). After extraction, each sample was divided into three subsamples, two for molecular identification and one to determine nematode abundance (see Resch et al., 2019). For the molecular work, two subsamples were stored in 70% ethanol (final volume 10 mL each) and transported to the laboratory at the Swiss Federal Research Institute WSL (Birmensdorf, Switzerland). Each subsample was reduced to roughly 200 μL by centrifugation and removal of the supernatant. The remaining ethanol was vaporized (65 °C for 3 h). Thereafter, 180 μL ATL buffer solution (Qiagen, Hilden, Germany) was immediately added and samples were stored at 4 °C until further processing. From these samples, nematode metagenomic DNA was extracted using the DNeasy Blood & Tissue Kit (Qiagen, Hilden, Germany) according to the manufacturer`s protocol, except for the incubation step which was run at 56 °C for 4 h. PCR amplification of the V6-V8 region of the eukaryotic small-subunit (18S) was performed with 7.5 μL of genomic DNA template (ca. 1 ng/μL) in 25 μL reactions containing 5 μL PCR reaction buffer, 2.5 mM MgCL2, 0.2 mM dNTPs, 0.8 μM of each primer (NemF: Sapkota & Nicolaisen, 2015; 18Sr2b: Porazinska et al., 2009), 0.5 μL BSA, and 0.25 μL GoTaq G2 Hot Start Polymerase (Promega Corporation, Madison, USA). Amplification was using an initial DNA denaturation step of 95 °C for 2 min, followed by 35 cycles at 94 °C for 40 sec, 58 °C for 40 sec, 72 °C for 1 min, and a final elongation step at 72 °C for 10 min. Filtering, dereplication, sample inference, chimera identification, and merging of paired-end reads was implemented using the DADA2 pipeline (v.1.12; Callahan et al., 2016) to finally assign amplicon sequence variants (ASVs) as taxonomic units.
We combined and homogenized the remaining two soil cores to assess soil microbes, placed them in coolers (4 °C) and transported them to the laboratory at WSL. Metagenomic DNA was extracted from 8 g sieved soil (2 mm) using the DNAeasy PowerMax Soil Kit (Qiagen, Hilden, Germany) according to the manufacturer´s protocol. PCR amplification of the V3-V4 region of the small-subunit (16S) of prokaryotes (i.e., bacteria and archaea) and the ribosomal internal transcribed spacer region (ITS2) of fungi was performed with 1 ng of template DNA using PCR primers and conditions as previously described (Frey et al., 2016). PCRs were run in triplicates, pooled and sent to the Genome Quebec Innovation Centre (Montreal, QC, Canada) for barcoding using the Fluidigm Access Array technology (Fluidigm) and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, USA). Quality filtering, clustering into operational taxonomic units (OTUs, 97% similarity cutoffs) and taxonomic assignment were performed as previously described (Resch et al., 2021).Taxonomic classification of nematode, prokaryotic and fungal sequences was conducted querying against the most recent versions of PR2 (v.4.11.1; Guillou et al., 2013), SILVA (v.132; Quast et al., 2013), and UNITE (v.8; Nilsson et al., 2019) reference sequence databases. Taxonomic assignment cutoffs were set to confidence rankings ≥ 0.8 (below ranked as unclassified). Prokaryotic OTUs assigned to mitochondria or chloroplasts as well as OTUs or ASVs assigned to other than Fungi or Nematoda were manually removed prior to data analysis. The three datasets were filtered to discard singletons and doubletons. Taxonomic abundance matrices were rarefied to the lowest number of sequences per community to achieve parity of the total number of reads between samples (Prokaryotes: 10,929 reads; Fungi: 18,337 reads; Nematodes: 6,662 reads). We calculated Shannon diversity and assessed community structures for soil nematodes, prokaryotes and fungi based on their relative abundances of ASV or OTU at the taxon level.

Collection of soil physical and chemical properties
We randomly collected one undisturbed soil core (5 cm diameter, 12 cm depth) per 4-m2 subplot using a steel cylinder that fit into the soil corer. The cylinders were capped to avoid disturbance during transport and used to measure field capacity, rock content and fine earth density as previously described (Resch et al., 2021). We randomly collected another three soil cores (5 cm diameter, 12 cm depths) in each 4-m2 subplot to determine soil chemical properties. The cores were pooled, dried at 60 °C for 48 h and passed through a 2 mm sieve. We measured soil pH (CaCl2) on dried samples, total nitrogen (N) and organic carbon (C) concentration on dried and fine-ground samples (≤ 0.5 mm; for details see Resch et al., 2021). We calculated total N and organic C pools after correcting its concentration for soil depth, rock content and fine earth density.

bacteria

display_name: bacteria

biodiversity

display_name: biodiversity

fungi

display_name: fungi

grassland

display_name: grassland

nematodes

display_name: nematodes

plants

display_name: plants

restoration

display_name: restoration

soil

display_name: soil

soil-biodiversity

display_name: soil-biodiversity

soil-biology

display_name: soil-biology

soil-chemistry

display_name: soil-chemistry

topsoil-removal

display_name: topsoil-removal

en: Long-term recovery of above-and belowground interactions in restored grasslands


en: nonlinear-deconvolution streamflow time-series rainfall-runoff-modelling hydrology precipitation nonstationarity ecohydrology

en: Zip-compressed folder containing two versions of the ERRA script. ERRA_v1.06.R uses Rcpp to speed up several key calculations, but requires a C++ compiler. ERRA_v1.06_no_Rcpp.R is a bit slower but does not require a C++ compiler or Rcpp. Public use of these scripts is permitted under GNU General Public License 3 (GPL3); for details see https://www.gnu.org/licenses/

en: An introduction to ERRA v1.06.pdf

en: "An introduction to ERRA" presents a series of vignettes that introduce some of the capabilities of the Ensemble Rainfall-Runoff Analysis (ERRA) script, and that show how to invoke them. This introduction also includes documentation for ERRA function calls, largely reproducing the documentation embedded in the ERRA script itself.

en: {{deprecated version}} ERRA_scripts.zip

en: Zip-compressed folder containing two versions of the ERRA script. ERRA_v1.0.R uses Rcpp to speed up several key calculations, but requires a C++ compiler. ERRA_v1.0_no_Rcpp.R is a bit slower but does not require a C++ compiler or Rcpp. Public use of these scripts is permitted under GNU General Public License 3 (GPL3); for details see https://www.gnu.org/licenses/

en: Demonstration scripts.zip

en: Zip-compressed folder containing demonstration scripts, source data, and output files for the ERRA results shown in "Introduction to ERRA" and in J.W. Kirchner, "Characterizing nonlinear, nonstationary, and heterogeneous hydrologic behavior using Ensemble Rainfall-Runoff Analysis (ERRA): proof of concept", Hydrology and Earth System Sciences, 2024.

en: {{deprecated version}} An introduction to ERRA.pdf

en:
ERRA is a data-driven, nonparametric, model-independent method for quantifying rainfall-runoff relationships across a spectrum of time lags, in systems that may be nonlinear, nonstationary, and spatially heterogeneous.
Researchers using ERRA in published work should cite J.W. Kirchner, "Characterizing nonlinear, nonstationary, and heterogeneous hydrologic behavior using Ensemble Rainfall-Runoff Analysis (ERRA): proof of concept", Hydrology and Earth System Sciences, 2024 (for ERRA itself) and J.W. Kirchner, "Impulse response functions for nonlinear, nonstationary, and heterogeneous systems, estimated by deconvolution and de-mixing of noisy time series", Sensors, 22(9), 3291, https://doi.org/10.3390/s22093291, 2022 (for the underlying mathematics).
This data set includes two versions of the ERRA script written in the open-source programming language R, a detailed user's guide, and sample scripts and source data for all of the results in Kirchner (2024).
These scripts are made publicly available under GNU General Public License 3; for details see https://www.gnu.org/licenses/. The data and documentation are made available under Creative Commons Attribution Share-Alike CC-BY-SA.
ETH Zurich, WSL, and James Kirchner make ABSOLUTELY NO WARRANTIES OF ANY KIND, including NO WARRANTIES, expressed or implied, that this software is free of errors or is suitable for any particular purpose. Users are solely responsible for determining the suitability and reliability of this software for their own purposes.

ecohydrology

display_name: ecohydrology

hydrology

display_name: hydrology

nonlinear-deconvolution

display_name: nonlinear-deconvolution

nonstationarity

display_name: nonstationarity

precipitation

display_name: precipitation

rainfall-runoff-modelling

display_name: rainfall-runoff-modelling

streamflow

display_name: streamflow

time-series

display_name: time-series

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: ERRA -- an R script for Ensemble Rainfall-Runoff Analysis


rorcc

maintainer: Tobias Wechsler

title_for_slug: rorcc

en: design-discharge run-of-river-power-plants hydropower environmental-flow climate-change

en: RoRCC

en:
The dataset “RoRCC” consists of simulation-based results on climate change impacts on Alpine RoR power production; it is based on 21 Swiss RoR power plants, with a total production of 5.9 TWh a-1. The dataset contains the following information:
-	metadata on the RoR power plants under consideration
-	annual and seasonal production scenarios differentiated into three emission scenarios (RCP2.6, RCP4.5, RCP8.5) and three future periods (T1: 2020–2049, T2: 2045–2074, T3: 2070–2099)
-	annual and seasonal production loss due to environmental flow requirements
-	annual and seasonal the technical increase potential (via design discharge optimisation)
-	annual and seasonal changes in the hydrological cycle for the three emission scenarios (RCP2.6, RCP4.5, RCP8.5) and three future periods (T1: 2020–2049, T2: 2045–2074, T3: 2070–2099)

en:
The dataset "RoRCC" consists of simulation-based results on climate change impacts on Alpine RoR power production; it is based on 21 Swiss RoR power plants, with a total production of 5.9 TWh a-1. The dataset contains the following information:
1) metadata on the RoR power plants under consideration, 2) annual and seasonal production potential scenarios under into three emission scenarios (RCP2.6, RCP4.5, RCP8.5) and three future periods (T1: 2020–2049, T2: 2045–2074, T3: 2070–2099), 3) annual and seasonal streamflow scenarios, 4) annual and seasonal production loss due to environmental flow requirements, 5) annual and seasonal the technical increase potential (via design discharge optimisation) and 6) annual and seasonal changes in the hydrological cycle.

climate-change

display_name: climate-change

design-discharge

display_name: design-discharge

environmental-flow

display_name: environmental-flow

hydropower

display_name: hydropower

run-of-river-power-plants

display_name: run-of-river-power-plants


maintainer: Zhao

en: planning urban-land-use driving-factors land-dynamics austin

en: Potential driving factors of urban transformations of Austin over 25 years

en: In this study, the Austin metropolitan area, Texas, U.S., one of the fastest urban transformations and transformations regions, is selected to test the hypothesis that spatial planning and policies are important factors of urban transformations. Despite ample previous work in understanding the interactions between human and urban form transformation at specific areas, the actual interventions and outcomes of planning and policies (e.g., ‘smart growth’) on urban forms have been poorly measured. In this study, the potential influencing factors of urban transformations of Austin over 25 years were selected and collected.

austin

display_name: austin

driving-factors

display_name: driving-factors

land-dynamics

display_name: land-dynamics

planning

display_name: planning

urban-land-use

display_name: urban-land-use


maintainer: Ionut Iosifescu Enescu

en: jupyter-notebooks reproducibility research-data-management open-science hpc open-data open-source

en: Open Science Support @ WSL (Poster)

en:
This poster was originally created for the swissuniversities Open Science Action Plan: Kick-Off Forum, and showed to the audience on 17.10.2019. It illustrates how the environmental data portal EnviDat provides the tools for fostering Open Science and Reproducibility of scientific research at WSL.

Supporting open science is a highly relevant user requirement for EnviDat and for implementing FAIR (Findability, Accessibility, Interoperability and Reusability) principles at dataset level.
EnviDat encourages WSL scientists to complement data publication with a complete description of research methods and the inclusion of the open source software, code or scripts used for processing the dataset or for obtaining the published results. By openly publishing open software (e.g. as Jupyter notebooks) alongside research data sets, researchers can contribute to mitigate reproducibility issues.

EnviDat also promotes and supports, where possible and practical, the publication of software as Jupyter notebooks. Jupyter notebooks provide a solution for improved documentation and interactive execution of open code in a wide range of programming languages (Python, R, Octave/Matlab, Java or Scala). These programming languages are widely used in environmental research at WSL and well supported by the Jupyter-compatible kernels. We have sucessfully interfaced EnviDat-hosted notebooks with the WSL High-Performance Computing (HPC) Linux Cluster through a JupyterHub/JuypterLab beta installation on the HPC cluster implemented in close collaboration with the WSL IT-Services.
For existing software that cannot be easily migrated to Jupyter Notebooks, the Open Science and Reproducibility is assisted by containerisation. We have proven that several Singularity containers can successfully run on WSL's HPC cluster.

Finally, the researchers can upload the data/results complemented by code (e.g. as Jupyter Notebooks, or Singularity containers) and any additional documentation in EnviDat. Consequently, they will receive a DOI for the entire dataset, which they can reference in their science paper in order to publish a more reproducible research.

_License_: This poster is released by WSL and the EnviDat team to the public domain under a Creative Commons 4.0 CC0 "No Rights Reserved" international license. You can reuse this poster in any way you want, for any purposes and without restrictions.

hpc

display_name: hpc

jupyter-notebooks

display_name: jupyter-notebooks

open-data

display_name: open-data

open-science

display_name: open-science

open-source

display_name: open-source

reproducibility

display_name: reproducibility

research-data-management

display_name: research-data-management

en: Open Science Support at the Swiss Federal Research Institute WSL. The EnviDat Concept


maintainer: Frank Hagedorn

en: plfa forest c13-labeling drought biogeochemical-cycling microbial-biomass

en: Gao_Frank_C13 pulse labeling.xlsx

en:
Data of manuscript by Gao t al. : Drought resistance and resilience of rhizosphere communities in forest soils from the cellular to ecosystem scale – insights from 13C pulse labeling
Inludes data on 13C pulse-labeling experiment in young beech model ecosystems and a mature pine forest. Data of soil climate, total PLFA, 13C label strength in PLFA of pulse-labeling carried out under drought and after rewetting

en: Data of 13C-pulselabeling experiments in a young beech model ecosystem and a mature pine forest exposed to drought and rewetting. Data include microclimate during the experiment, total PLFA contents, d13C signatures in PLFA , microbial biomass, soil-respired CO2 measure during 30 days following 3-4 hour long pulse labeling with highly 13C-enriched CO2.

biogeochemical-cycling

display_name: biogeochemical-cycling

drought

display_name: drought

forest

display_name: forest

microbial-biomass

display_name: microbial-biomass

plfa

display_name: plfa

en: Gao_Drought resistance and resilience of rhizosphere communities_13C-PLFA


maintainer: Giulia Mazzotti

en: forest-structure snow-energy-balance snow-distribution snow-modelling forest-snow

en: Meteo data to drive FSM2 model

en: Includes meteorological driving data used to run the forest snow model FSM2, processed and parsed in text files that match the format required by FSM2. Separate files are available for each field area (Laret, Drusatscha and Ischlag) and season (2012/13, 2013/14, 2014/15). Each file includes data for the period from October 1st to May 31st at hourly resolution.

en: Snow depth data open sites

en: Contains all snow detph data accquired at open sites nearby the forest stands during the same period.

en: Grid point nomenclature

en: The grid structure of each forest site and the respective nomenclature applied to label individual points within each grid are outlined here.  Each point marks the location of snow depth measurements and co-located canopy structure parameters.

en: Coordinates data

en: Includes coordinate information of each surveyed point (7 x 276 = 1932 forest points, 2 open areas)

en: Canopy data

en: Includes all canopy structure metrics computed at all surveyed locations

en: Snow depth data forest sites

en: Contains all snow depth data acquired at all forest sites during winters 2012/13, 2013714 and 2014/15.

en:
This dataset contains all snow, canopy and meteorological data presented and used in the publication: Mazzotti, G., Essery, R., Moeser, D. & Jonas T. (2020) 'Resolving spatial variability of forest snow using an energy-balance model with a 1-layer canopy'. Water Resources Research, https://doi.org/10.1029/2019WR026129.
This publication must be cited when using this dataset.

forest-snow

display_name: forest-snow

forest-structure

display_name: forest-structure

snow-distribution

display_name: snow-distribution

snow-energy-balance

display_name: snow-energy-balance

snow-modelling

display_name: snow-modelling

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Snow depth, canopy structure and meterorological datasets from the Davos area, Switzerland, Winters 2012/13-2014/15, used for high-resolution forest snow modelling