maintainer: M. Carol Resch

en: topsoil-removal vegetation diversity grassland restoration nematodes long-term-experiment

en: Nematode colonizer-persister classes

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

CP1.a: C-P (colonizer-persister) class 1 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to enrichment indicators according to Ferris, Bongers, & de Goede 2001
CP2.a: C-P (colonizer-persister) class 2 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to stress indicators according to Ferris, Bongers, & de Goede 2001
CP3.a: C-P (colonizer-persister) class 3 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990
CP4.a: C-P (colonizer-persister) class 4 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990
CP5.a: C-P (colonizer-persister) class 5 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

en: Nematode families

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

column 3-41: Nematode abundance (individuals per 100g dry soil) per family; nomenclature according to Bongers 1988

en: Nematode feeding types

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

He.ecto.a: Herbivorous ectoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

He.endo.a: Herbivorous endoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ba.a: Bacterivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Fu.a: Fungivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Om.a: Omnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ca.a: Carnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

en: Nemadotes and vegetation

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

X: X-Coordinate

Y: Y-Coordinate

Ri.veg: Total number of plant species

Div.veg: Shannon diversity of plant species

Ri.nem: Total number of nematode families

Div.nem: Shannon diversity of nematode families

abund: Total nematode abundance (individuals per 100g dry soil)

MI: Maturity index according to Bongers 1990; calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

PPI: Plant parasite index according to Bongers 1990; calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

PPI.MI: Plant parasite to Maturity index according to Bongers, van der Meulen, & Korthals 1997; calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

CI: Channel index according to Ferris, Bongers, & de Goede 2001 (%); calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

EI: Enrichment index according to Ferris, Bongers, & de Goede 2001 (%); calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

SI: Structure index according to Ferris, Bongers, & de Goede 2001 (%); calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

He.a: Herbivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

He.ecto.a: Herbivorous ectoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

He.endo.a: Herbivorous endoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ba.a: Bacterivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Fu.a: Fungivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Om.a: Omnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ca.a: Carnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Om.Ca.a	Sum of omnivorous and carnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014
CP1.a: C-P (colonizer-persister) class 1 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to enrichment indicators according to Ferris, Bongers, & de Goede 2001

CP2.a: C-P (colonizer-persister) class 2 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to stress indicators according to Ferris, Bongers, & de Goede 2001

CP3.a: C-P (colonizer-persister) class 3 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

CP4.a: C-P (colonizer-persister) class 4 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

CP5.a: C-P (colonizer-persister) class 5 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

CP3-5.a: Sum of C-P3, C-P4 and C-P5 nematode abundance (individuals per 100g dry soil) equivalent to structure indicators according to Ferris, Bongers, & de Goede 2001

protect.sp.pro: plant species categorized into species of concern based on their red list status in Switzerland as well as their protection status in Switzerland and the Canton Zurich (Moser, Gygax, Bäumler, Wyler, & Palese, 2002)

tar.sp: Number of target species (all species recorded in the eleven target plots plus propagules of species applied by hand, resulting in a total of 143 species)

Indi.moist: Plant indicator values for soil moisture according to Landolt et al. 2010

Indi.nutri: Plant indicator values for soil nutrients according to Landolt et al. 2010

Management: level of mowing and manuring frequency (35-40 kg N ha-1 application-1); intensity1 = mowing once and no manure; intensity2 = 2-3 times mowing and no manure; intensity3 = 2-3 times mowing and manuring; intensity4 = 4-5 times mowing and manuring

Tillage: last time of tillage

Land.use.history: for Initial plots = recent agricultural use; for all restored sites = agricultural use before restoration
Mowing	earliest date of biomass harvesting (excluding “Initial”) based on contracts between farmers and the Nature Protection Agency of Zurich

Soil.type: based on soil mapping survey 1991 (before restoration)

Soil.texture: determined by the sediment method (Gee & Bauder 1986) and classified into soil textural classes according to FAO (1990)

pH: soil pH (CaCl2)

Slope: slope gradient classes according to FAO (1990; %)

en: Plant community composition (plant species)

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

column 3-252: Plant abundance per species (in total 252 plant species) expressed as cover percentage estimation according to van der Maarel (vdM 1979; 7 classes: 1-7); nomenclature according to Lauber & Wagner (1996)

en: Coordinates of one research plot were wrong. This was corrected in the current version of the file.

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:
 > Resch, M.C., Schütz, M., Graf, U., Wagenaar, R., van der Putten, W.H., Risch, A.C. 2019. Does topsoil removal in grassland restoration benefit both soil nematode and plant communities? Journal of Applied Ecology 56: 1782-1793.

Please cite this paper together with the citation for the datafile.

 Methods
 Study area and experimental settings
The study was conducted in a nature reserve (Eigental: 47° 27’ to 47° 29’ N, 8° 37’ E, 461 to 507 m a.s.l.) that is located on the Swiss Central plateau close to Zurich airport (Canton Zurich, Switzerland). The mean annual temperature in this area ranges from 8.9 to 10.6 °C, mean annual precipitation from 910 to 1260 mm [10-year average (2007-2017); MeteoSchweiz, 2018]. The main soil types are calcaric to gleyic Cambisol and Gleysols. The reserve was established in 1967 to protect small remnants of oligotrophic semi-natural grasslands (roughly 12 ha). The plant community can be characterized as Molinion and Mesobromion (semi-wet to semi-dry), depending on the site-specific groundwater level and slope inclination (Delarze, Gonseth, Eggenberg, & Vust, 2015). These remnants represent species-rich islands in an otherwise intensively managed agricultural landscape. Semi-natural grasslands covered an area of 60,000 ha in the Canton Zurich in 1939, however, by 2005 only roughly 600 ha remained (Baudirektion Kanton Zürich, 2007). In 1990, the government of Canton Zurich decided to enlarge the nature reserve Eigental. The goal was to incorporate eleven patches of 20 ha adjacent intensively farmed land and transform these patches into semi-natural grasslands. The patches had a different agricultural history, ranging from permanent (no tillage for >50 years) to temporary grassland (as part of crop rotation; last tillage <5 years). On all freshly integrated patches fertilization was stopped in 1992 and from then on biomass was harvested three times a year and removed. After 5 years without noticeable effects on vegetation composition, the Nature Conservation Agency of Canton Zurich decided to increase the restoration efforts. In 1995, a large-scale experiment was initialized to evaluate if certain treatments can facilitate restoration within a reasonable timeframe of 5 to 10 years after treatment implementation.
The three restoration treatments used were:
i. “Harvest only”: Plots are being mowed two to three times a year and the biomass is removed.
ii. “Topsoil”: Topsoil was removed to a depth of 10 to 20 cm, depending on the depth of the O and A horizon, in four randomly selected areas within each of the eleven patches in late autumn 1995. The size of each topsoil removal area depended on individual patch size and was between 2700 and 7000 m2.
iii. “Topsoil+Propagules”: Propagules from target vegetation were added on half of the area where topsoil was removed, using fresh, seed-containing hay originating from a mixture of semi-dry to semi-wet species-rich grasslands of local provenance (within a radius of 7 km). Hay applications were conducted twice in 1995 and 1996. Repeated applications were chosen to account for the low quantity of available plant material per transfer, since area ratio between receptor and donor sites was roughly 1:1. In addition, hand-collected propagules from 15 selected target species of regional provenance (within a radius of 30 km) were equally applied in 1996 and 1997.
“Topsoil” and “Topsoil+Propagules” plots are mowed once a year, and the biomass is removed. Mowing on these plots started five years after the treatment was implemented.
Eleven permanent plots of 5 m x 5 m were randomly established in each treatment to monitor the vegetation development. The experiment was complemented with 11 control plots that represent the initial state of intensively managed grasslands, further referred to as “Initial”, and 11 control plots that represent the targeted state of donor sites for “Topsoil+Propagules”, further referred to as “Target”. Consequently, the experiment consists of 55 plots (5 treatments x 11 replicates). Management of intensively used grasslands includes mowing and fertilizing (manure) between two to five times a year, as well as different tillage regimes (no tillage for >50 years; last time of tillage <5 years).

 Nematode and plant sampling
Soil nematodes were sampled in 2 m x 2 m plots, randomly established at least 2 m away from the vegetation plots. We collected eight soil cores with a 2.2 cm diameter soil core sampler (Giddings Machine Company, Windsor, CO, USA) to a depth of 12 cm (representing the majority of the plant rooting system) in each plot at the beginning of July 2017. The eight cores within each replicate plot were combined, gently homogenized, placed in coolers and transported to the laboratory of NIOO in Wageningen, the Netherlands, within one week. Free-living nematodes were extracted from 200 g of fresh soil using Oostenbrink elutriator (Oostenbrink, 1960) and concentrated, resulting in 6 mL nematode solution. The nematode solution was subdivided into three subsamples, two for morphological identification and quantification, and one for molecular work (not used in this study). For morphological identification and quantification, nematodes were heat-killed at 90 °C and fixed in 4 % formaldehyde solution (final volume 10 mL per subsample). All nematodes in 1 mL of formaldehyde solution were counted, and a minimum of 150 individuals per 1 mL sample (or all if less nematodes were present) were identified to family level using Bongers (1988). We then extrapolated the numbers of each nematode taxa identified to the entire sample and expressed them per 100 g dry soil for further analyses.
We calculated number of nematode taxa and Shannon diversity and assessed nematode community composition. In addition, we classified the nematode taxa into feeding types (herbivores, bacterivores, fungivores, omni-carnivores), structural and functional guilds (Table S4). Structural guilds assign nematode taxa according to life-history traits into five colonizer-persister (C-P) classes, ranging from one (early colonizers of new resources) to five (persisters in undisturbed habitats; Bongers 1990). C-P classes can be categorized as indicators for nutrient-enriched (C-P1), stressed (C-P2) and structured (C-P3 + C-P4 + C-P5) soil conditions (Ferris, Bongers, & de Goede, 2001). Functional guilds assign nematode taxa according to their C-P classification combined with their feeding habits (Ferris, Bongers, & de Goede, 2001). Based on the structural and functional guild classification we calculated five additional indices to assess soil nutrient status, disturbance and food web characteristics using NINJA (Sieriebriennikov, Ferris, & de Goede, 2014). 1) The Maturity index indicates the degree of different environmental perturbations (e.g., tillage, nutrient enrichment, pollution) and is used to monitor colonization and subsequent succession after disturbances (Bongers, 1990). 2) The ratio between the Plant Parasite (C-P of herbivorous nematodes only) to Maturity index is used to monitor the recovery of disturbed habitats incorporating information of life-history traits for all feeding types (Bongers, van der Meulen, & Korthals, 1997). 3) The Enrichment index indicates nutrient-enriched soils and agricultural management practices (Ferris, Bongers, & de Goede, 2001). 4) The Structure index provides information about the succession stage of the soil food web and therefore correlates with the degree of maturity of an ecosystem (Ferris, Bongers, & de Goede, 2001). 5) The Channel index provides information about the predominant decomposition pathways, where higher values stand for a higher proportion of energy transformed through the slow fungal decomposition channel (Ferris, Bongers, & de Goede, 2001). In addition, the Structure and Enrichment indices can be displayed in a biplot where nematode assemblages are plotted along a structure (x-axis) and enrichment (y-axis) trajectory (increasing index values). Each biplot quadrat reflects different levels of disturbance, soil nutrient pools and decomposition pathways (Ferris, Bongers, & de Goede, 2001).
The plant surveys were conducted on the 25 m2 permanent plots in June 2017. Plant species cover was visually assessed according to the semi-quantitative cover-abundance scale of Braun-Blanquet (1964; nomenclature: Lauber & Wagner, 1996). We calculated number of species and Shannon diversity, and assessed plant community composition. We also counted the number of target species (all species recorded in the eleven target plots plus propagules of species applied by hand, resulting in a total of 143 species) and categorized plant species into species of concern based on their red list status in Switzerland as well as their protection status in Switzerland and the Canton Zurich (Moser, Gygax, Bäumler, Wyler, & Palese, 2002). Furthermore, we calculated indicator values for soil moisture and soil nutrients for each species according to Landolt et al. (2010).

 References
Baudirektion Kanton Zürich (2007). 10 Jahre Naturschutz-Gesamtkonzept für den Kanton Zürich 1995-2005 – Stand der Umsetzung. Zürich: Baudirektion Kanton Zürich.
Bongers, T. (1988). De nematoden van Nederland. Utrecht: Stichting Uitgeverij Koninklijke Nederlandse Natuurhistorische Vereniging.
Bongers, T. (1990). The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia, 83, 14-19. doi:10.1007/BF00324627
Bongers, T., van der Meulen, H., & Korthals, G. (1997). Inverse relationship between the nematode maturity index and plant parasite index under enriched nutrient conditions. Applied Soil Ecology, 6, 195-199. doi:10.1016/S0929-1393(96)00136-9
Braun-Blanquet, J. (1964). Pflanzensoziologie, Grundzüge der Vegetationskunde (3rd ed.). Wien: Springer.
Delarze, R., Gonseth, Y., Eggenberg, S., & Vust, M. (2015). Lebensräume der Schweiz: Ökologie - Gefährdung - Kennarten (3rd ed.). Bern: Ott.
Ferris, H., Bongers, T., & de Goede, R.G.M. (2001). A framework for soil food web diagnostics: extension of the nematode faunal analysis concept. Applied Soil Ecology, 18, 13-29. doi:10.1016/S0929-1393(01)00152-4
Landolt, E., Bäumler, B., Erhardt, A., Hegg, O., Klötzli, F., Lämmler, W., … Wohlgemuth, T. (2010). Flora indicativa. Ecological indicator values and biological attributes of the Flora of Switzerland and the Alps (2nd ed.). Bern: Haupt.
Lauber, K., & Wagner, G. (1996). Flora Helvetica. Flora der Schweiz. Bern: Haupt.
MeteoSchweiz (2018). Klimabulletin Jahr 2017, Zürich: MeteoSchweiz.
Moser, D., Gygax, A., Bäumler, B., Wyler, N., & Palese, R. (2002) Rote Liste der gefährteten Farn- und Blütenpflanzen der Schweiz. Bern: BUWAL.
Oostenbrink, M. (1960). Estimating nematode populations by some selected methods. In N.J. Sasser & W.R. Jenkins (Eds.), Nematology (pp. 85-101). Chapel Hill: University of North Carolina Press.
Sieriebriennikov, B., Ferris, H., & de Goede, R.G.M (2014). NINJA: An automated calculation system for nematode-based biological monitoring. European Journal of Soil Biology, 61, 90-93. doi:10.1016/j.ejsobi.2014.02.004

diversity

display_name: diversity

grassland

display_name: grassland

long-term-experiment

display_name: long-term-experiment

nematodes

display_name: nematodes

restoration

display_name: restoration

topsoil-removal

display_name: topsoil-removal

vegetation

display_name: vegetation

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Grassland restoration: nematodes and plant communities


historical-vegetation-height-model-nfi

maintainer: Mauro Marty

title_for_slug: historical-vegetation-height-model-nfi

en: nfi vhm dsm forest historical photogrammetry

state: active

type: dataset

en: 1979-1985 Vegetation Height Model

format: GeoTIFF

en: 1998-2006 Vegetation Height Model

media_type: text/plain

en: Description of available data

format: TXT

en: 1985-1991 Vegetation Height Model

en: 1990-1998 Vegetation Height Model

en:
The main datasets available are 4 nationwide **Digital Surface Models (DSMs)** and corresponding **Vegetation Height Models (VHMs)** with a spatial resolution of 1 m.
The Vegetation Height Models are calculated by subtraction of a Digital Terrain Model (swissAlti3d version 2017, swisstopo) from the generated DSMs. DSMs were derived by image matching of **scanned historical images** (panchromatic 8-bit) acquired with a RC10 frame camera, in the context of the swisswide image acquisition campaigns of swisstopo.
Nationwide products could be generated for the **four epochs**
 1979-1985 / 1985-1991 / 1990-1998 / 1998-2006.
Additional information about successful image matching vs. interpolation of pixels and about the year of image acquisition are available in the corresponding files (**matched_area_xxxx_xxxx_binay.tif** and **meta_acquisition_year_xxxx_xxxx.json**, respectively).
To separate vegetation from non-vegetation areas a mask derived from a combination of information of the Topographic landscape model - TLM (swisstopo) and a NDVI layer was used and is supplied as **"TLM_mask.tif"**
Due to the occurrence of unrealistic vegetation height values caused by the failure of the image matching process (mainly overexposed images and clouds or very steep rocky terrain), pixel values > 60 m were set to NoData and < 0 m to 0.
All datasets are available in the Reference System **LV95 (EPSG: 2056) LN02 (EPSG: 5728)** and share the common **extent definition** (xmin ymin xmax ymax): 2480000 1070000 2840000 1300000

dsm

display_name: dsm

forest

display_name: forest

historical

display_name: historical

nfi

display_name: nfi

photogrammetry

display_name: photogrammetry

vhm

display_name: vhm

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Historical Vegetation Height Model NFI


maintainer: Frank Hagedorn

en: forest drought biogeochemical-cycling plfa c13-labeling microbial-biomass

en: Gao_Frank_C13 pulse labeling.xlsx

en:
Data of manuscript by Gao t al. : Drought resistance and resilience of rhizosphere communities in forest soils from the cellular to ecosystem scale – insights from 13C pulse labeling
Inludes data on 13C pulse-labeling experiment in young beech model ecosystems and a mature pine forest. Data of soil climate, total PLFA, 13C label strength in PLFA of pulse-labeling carried out under drought and after rewetting

format: XLS

en: Data of 13C-pulselabeling experiments in a young beech model ecosystem and a mature pine forest exposed to drought and rewetting. Data include microclimate during the experiment, total PLFA contents, d13C signatures in PLFA , microbial biomass, soil-respired CO2 measure during 30 days following 3-4 hour long pulse labeling with highly 13C-enriched CO2.

biogeochemical-cycling

display_name: biogeochemical-cycling

drought

display_name: drought

microbial-biomass

display_name: microbial-biomass

plfa

display_name: plfa

en: Gao_Drought resistance and resilience of rhizosphere communities_13C-PLFA


maintainer: Lisa Hülsmann

en: tree-mortality forest-reserves tree-growth empirical-mortality-models inventory-data

en: Calibration data

media_type: text/csv

en:
A set of three consecutive inventories was used to generate records for the calibration of mortality models based on trees that were alive in the first and second inventory and either dead or alive in the third inventory.

 Meta data
Reserve: Name of the forest reserve

Plot: Permanent plot number

 Tree data
Species: Latin species name (or species group, cf. _Quercus_ spp.)

y: Status of the tree with 0 = alive and 1 = dead

dt: Length of the mortality period (years)

DBH: Diameter at breast height (mm) of the second inventory

relBAI: Annual relative basal area increment (-) calculated based on the first and the second DBH measurement as the compound annual growth rate of the trees basal area

 Stand data
_All stand variables were calculated for the second inventory._

mDBH: Mean diameter at breast height (mm)

iqrDBH: Interquartile range of diameter at breast height (mm)

BA: Basal area per hectare (m2 ha-1)

N: Number of trees per hectare (ha-1)

 Climate data
_Both climate variables were calculated for the period between the second and the third inventory._

P: Mean annual precipitation sum (mm)

mT: Mean annual air temperature (°C)

format: CSV

mimetype: text/csv

en:
The dataset comprises > 90 000 records from inventories in 54 strict forest reserves in [Switzerland](https://www.wsl.ch/de/wald/biodiversitaet-naturschutz-urwald/naturwaldreservate.html) and [Lower Saxony / Germany](http://naturwaelder.de/) along a considerable environmental gradient. It was used to develop parsimonious, species-specific mortality models for 18 European tree species based on tree size and growth as well as additional covariates on stand structure and climate.

 Inventory data
Measurements had been conducted repeatedly on up to 14 permanent plots per reserve for up to 60 years with re-measurement intervals of 4 - 27 years. The permanent plots vary in size between 0.03 and 3.47 ha. The inventories provide diameter measurements at breast height (DBH) and information on the species and status (alive or dead) of trees with DBH ≥ 4 cm for Switzerland and ≥ 7 cm for Germany.

 Data selection
We excluded three permanent plots where at least 80 % of the trees died during an interval of 10 years, and mortality could be clearly assigned to a disturbance agent. Mortality in the remaining stands was rather low, with a mean annual mortality rate of 1.5 % and strong variation between plots from 0 to 6.5 % (assessed for trees of all species with DBH ≥ 7 cm).
We only used data from permanent plots with at least 20 trees per species to obtain reliable plot-level mortality rates even for species with low mortality rates (about 5 % during 10 years), and selected tree species occurring on at least 10 plots to cover sufficient ecological gradients. This led to a dataset of 197 permanent plots and 18 tree or shrub species: _Abies alba_ Mill., _Acer campestre_ L., _Acer pseudoplatanus_ L., _Alnus incana_ Moench., _Betula pendula_ Roth, _Carpinus betulus_ L., _Cornus mas_ L., _Corylus avellana_ L., _Fagus sylvatica_ L., _Fraxinus excelsior_ L., _Picea abies_ (L.) Karst, _Pinus mugo_ Turra, _Pinus sylvestris_ L., _Quercus pubescens_ Willd., _Quercus_ spp. (_Q. petraea_ Liebl. and _Q. robur_ L.; not properly differentiated in the Swiss inventories), _Sorbus aria_ Crantz, _Tilia cordata_ Mill. and _Ulmus glabra_ Huds..

 Predictors of tree mortality
We considered tree size and growth as key indicators for mortality risk. Radial stem growth between the first and second inventory and DBH at the second inventory were used to predict tree status (alive or dead) at the third inventory. To this end, the annual relative basal area increment (relBAI) was calculated as the compound annual growth rate of the trees basal area. Additional covariates on stand structure and climate comprise mean annual precipitation sum (P), mean annual air temperature (mT), the mean and the interquartile range of DBH (mDBH, iqrDBH), basal area (BA) and the number of trees (N) per hectare.

 Further information
For further information, refer to Hülsmann _et al_. (in press) How to kill a tree – Empirical mortality models for eighteen species and their performance in a dynamic forest model. _Ecological Applications_.

empirical-mortality-models

display_name: empirical-mortality-models

forest-reserves

display_name: forest-reserves

inventory-data

display_name: inventory-data

tree-growth

display_name: tree-growth

tree-mortality

display_name: tree-mortality

educ

en: Education, culture and sport

en: Calibration data for empirical mortality models of 18 European tree species


maintainer: EnviDat Support

en: fagus-sylvatica network-analysis tree-ring dendroecology dendrochronology beech

en:
R code to run the model behind the results of the research article "No future growth enhancement expected at the northern edge for European beech due to continued water limitation".
Requires beech_rawtrw.txt.

format: OCTET

en:
This dataset contains the raw ring-width and climate data (1952-2020) used in the research article "No future growth enhancement expected at the northern edge for European beech due to continued water limitation".
RW= ring width
Year= Calendar year
CN = core number
ID3= plot identifier
longitude = longitude (°)
latitude = latitude (°)
elevation = elevation (m)
age= estimated age in calendar year
radius= estimated radius in calendar year (mm)
MAT= mean annual temperature (°C)
MAP= mean annual precipitation (mm)
MCWB= mean climatic water balance (P-PET; mm)
amplitude= simple continentality measure (July - January mean maximum temperatures)
MATspline1 and 2, MCWBspline1 and 2, radiusspline4 and 5= natural spline transformed values of MAT, MCWB and radius ns(x,2)
CWD_pMay_Jun= Climatic Water Balance of previous year May to June !!!#please note CWD here is NOT Climatic Water Deficit, this was a labeling error in the creation of the dataset headers
CWD_May_Jun= Climatic Water Balance of current year May to June
Tmax_pMay_Jun= mean monthly maximum temperature of previous year May to June
Tmax_May_Jun= mean monthly maximum temperature of current year May to June
weight = site replication-based weighting input for model
SOM= membership of regional cluster 1-8 based on Supervised Organized Mapping

en: Model output

en: Output of the Mixed-effects model

en: This dataset contains the raw ring-width and climate data (1952-2020), as well as the R code to run the model and the model output used in the research article "No future growth enhancement expected at the northern edge for European beech due to continued water limitation".

beech

display_name: beech

dendrochronology

display_name: dendrochronology

dendroecology

display_name: dendroecology

fagus-sylvatica

display_name: fagus-sylvatica

network-analysis

display_name: network-analysis

tree-ring

display_name: tree-ring

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: European Beech tree-ring dataset 1952-2020


en: bryophytes garten diversitat flechten lichens bryolich moose

en: Im Rahmen des Bryolich-Projekts “Moose und Flechten in Gärten” wurden möglichst vollständige Artenlisten von Moosen und Flechten in 26 bzw. 7 Gärten um Wohnhäuser erstellt. In 5 dieser Gärten wurden beide Artengruppen erfasst. Zusätzlich wurden Informationen über unterschiedliche Lebensräume innerhalb der Gärten (z.B. Fläche mit Gehölzen, Fläche von Blumenbeeten) und weitere Garten-Charakteristika (z.B. Fläche des Gartens, Alter des Gartens, Einsatz von Dünger) erfasst. Details zum Projekt und den erfassten Daten können im zugehörigen Artikel (Bergamini et al. 2024) und auf der Webseite von Bryolich gefunden werden (https://www.bryolich.ch/mfig/mfig_de.html).

bryolich

display_name: bryolich

bryophytes

display_name: bryophytes

diversitat

display_name: diversitat

flechten

display_name: flechten

garten

display_name: garten

lichens

display_name: lichens

moose

display_name: moose

en: Daten Bryolich-Projekt Moose und Flechten in Gärten


data-set-on-snow-instability

title_for_slug: data-set-on-snow-instability

en: crack-propagation slab-tensile-support snow-avalanche slab rutschblock failure-initiation weak-layer propgatoin-saw-test avalanche-forcasting snow-stability-evaluation

en: Read-me file on snow instability data

media_type: application/pdf

format: PDF

mimetype: application/pdf

en: data set on snow instability

en:
These data on snow instability include three data subsets that were analyzed and the results published by Reuter and Schweizer (2018) who suggest a novel framework on how to describe snow instability by failure initiation, crack propagation and slab tensile support.

Please refer to the Read-me file for further details on the data.

These data are the basis of the following publication:
Reuter, B. and Schweizer, J., 2018. Describing snow instability by failure initiation, crack propagation and slab tensile support. Geophys. Res. Lett., 45, doi: 10.1029/2018GL078069.

avalanche-forcasting

display_name: avalanche-forcasting

crack-propagation

display_name: crack-propagation

failure-initiation

display_name: failure-initiation

propgatoin-saw-test

display_name: propgatoin-saw-test

rutschblock

display_name: rutschblock

slab

display_name: slab

slab-tensile-support

display_name: slab-tensile-support

snow-avalanche

display_name: snow-avalanche

snow-stability-evaluation

display_name: snow-stability-evaluation

weak-layer

display_name: weak-layer

en: Data set on snow instability


en: water-isotopes drifting-snow cold-lab snow-saltation blowing-snow wind-tunnel experiments metamorphism

en: Snow samples - sphere size statistics files

media_type: application/zip

en: The individual measurement reports of the microCT scan for each snow sample as combined zip file. The file names and the sample number indicate which snow sample it is, see "Snow samples - microCT measurements". Each file contains the statistics and the count of fitted sphere size diameters and the respective share (in-%) in the frequency distribution. Immediately after snow sampling, a small portion of snow was transferred to the cylindrical μCT sample holder with a diameter of 15 mm and analysed at -20°C using a Scanco® CT-40 scanner. The analysis followed Hildebrand and Rüegsegger (1997).

format: ZIP

en: Snow samples - microCT measurements

en: The data of the snow samples that were analysed in a Scanco® CT-40 scanner using a sample holder of 15 mm diameter which allowed for a high-resolution analysis with voxel size of 8 μm. The timestamp (local time, Davos, Switzerland) of snow sampling is given as well as the type of snow sample (see Snow samples - stable water isotopic composition dataset), the corresponding wind tunnel experiment number ("ExpNo", Wahl et al. (2024), Table 1) and the time since the snow introduction to the wind tunnel. The measured SSA is given in units 1/mm. The column "hist_filename" lists the name of the corresponding .txt file which contains the sphere size statistics of the snow samples. The sphere size statistics files are compressed in a .zip file.

en:
The dataset contains the stable water isotopic composition (d18O, dD. d-excess) of the snow samples taken during the ring wind tunnel experiments in January and May 2023 at the SLF cold laboratory facilities in Davos. The snow samples were collected in air-tight WhirlPaks and kept frozen at -20°C until they were melted in the closed sampling bags, filtered and 1.8ml were transferred into a 2ml glass vial and shipped to the Paul Scherrer Institut in Villigen, Switzerland where they were analysed following established laboratory procedures. The combined uncertainty on the individual isotopic composition is <0.5‰ for dD and <0.1‰ for d18O which yields an uncertainty of 0.9‰ on d-excess.
Timestamps are given for local Davos time (LT) and synchronised to the CRDS instrument which is in UTC. The "ExpNo" column refers to the experiment numbers given in Wahl et al. (2024), Table 1. The "type" of the snow samples is: "ini" = initial snow before introduction to the wind tunnel, "airborne" = snow sampled out of the air, "acc_in" = inner part of accumulated snow, "acc_out" = outer surface layer of accumulated snow.

en: Meteorological variables measured inside the wind tunnel during the January 2023 experiments

en: The dataset contains the 1-minute averages of the calibrated meteorological variables: temperature (T, °C), relative humidity (RH, %), relative humidity referenced against saturation over ice (RHice, %), specific humidity (q, g/kg) and wind speed (WS, m/s) as measured in the observation section of the wind tunnel at different heights. The measurement heights correspond to: "Top"=42.5cm, "Mid"=30cm, "Bot"=15cm, "PT100_Ta"=3cm. "WS" was measured at 36.5cm height. The timestamp is in local time (UTC+1) and indicates the start of the averaging period.

en: Meteorological variables measured inside the wind tunnel during the May 2023 experiments

en: The dataset contains the 1-minute averages of the calibrated meteorological variables: temperature (T, °C), relative humidity (RH, %), relative humidity referenced against saturation over ice (RHice, %), specific humidity (q, g/kg) and wind speed (WS, m/s) as measured in the observation section of the wind tunnel at different heights and the room temperature of the laboratory measured outside the wind tunnel (Lab_Ta, °C). The measurement heights correspond to: "Top"=42.5cm, "Mid"=30cm, "Bot"=15cm, "PT100_Ta"=3cm. "WS" was measured at 36.5cm height. The time was synchronised to the concurrent CRDS measurements (which are UTC) and adjusted for the time lag resulting from pumping vapour from inside the wind tunnel to the CRDS. The timestamps indicate the beginning of the averaging period.

en: Wind tunnel water vapour isotopic composition

en: The water vapour and its calibrated isotopic composition sampled inside the wind tunnel at 46cm height during the experiments. The vapour was pumped through a heated copper tube at a rate of 0.2 l/min to the CRDS instrument located in a temperate room outside the cold laboratory. The data has 1 second resolution with the timestamp in UTC (CRDS reference time). The measured variables are the calibrated d18O (‰), dD (‰) and d-excess (‰) signals and the uncalibrated ("H2Oraw", ppmv) and calibrated ("H2Ocali",ppmv) humidity readings of the CRDS and converted to specific humidity ("spechum", g/kg). The isotope data was corrected for its humidity-isotope dependency and referenced against the VSMOW-SLAP scale. Calibration runs were performed daily and details can be found in Wahl et al. (2024) including the Supplementary Materials.

en: This dataset collection contains all datasets collected during the ring wind tunnel experiments in January and May 2023 at the SLF cold laboratory facilities in Davos. A full description of the experiment set-up can be found in Wahl et al. (2024). The collection contains data from 19 experiments. The dataset collection entails measurements of the stable water isotopic composition of snow samples and the water vapour inside the wind tunnel, measurements of the meteorological variables inside the wind tunnel and snow sample properties as measured with microCT measurements (sphere size distribution and specific surface area (SSA)).

blowing-snow

display_name: blowing-snow

cold-lab

display_name: cold-lab

drifting-snow

display_name: drifting-snow

experiments

display_name: experiments

metamorphism

display_name: metamorphism

snow-saltation

display_name: snow-saltation

water-isotopes

display_name: water-isotopes

wind-tunnel

display_name: wind-tunnel

educ

en: Education, culture and sport

en: Ring wind tunnel experiments - airborne snow metamorphism and stable water isotopes


en: stillberg afforestation mountain-forest long-term-experiment treeline

en: Site photo

en: This site photo is outdated and has been replaced with an updated version (see description).

format: SERVICE

en: Documentation

en: This data documentation is outdated and has been replaced with an updated version (see description).

mimetype: application/msword

en: Dataset V1

en: This dataset is outdated and has been replaced with an updated version (see description).

format: GDB

en:
 Important
This EnviDat entry is outdated. The most recent, usable version of the data can be found under the new EnviDat entry "Long-term afforestation experiment at the Alpine treeline site Stillberg, Switzerland." The entry can be found under this link <https://www.envidat.ch/dataset/afforestation-stillberg> and with this DOI 10.16904/envidat.397.

afforestation

display_name: afforestation

long-term-experiment

display_name: long-term-experiment

mountain-forest

display_name: mountain-forest

stillberg

display_name: stillberg

treeline

display_name: treeline

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Long-term treeline research dataset at Stillberg, Davos


en: wind temperature-profiles precipitation radiation atmospheric-conditions

en: DATA ACCESS

en: This data access is outdated and has been replaced with an updated version (see description).

en: Site photo 3

en: Site photo 2

en: Site photo 1

en: Latest data from Stillberg climate station

en: Overview plot

media_type: image/png

en: This overview plot is outdated and has been replaced with an updated version (see description).

format: PNG

en: STB2 CSV

en: README

en: This description is outdated and has been replaced with an updated version (see description).

en:
 Important
This EnviDat entry is outdated. The most recent, usable version of the data can be found under the new EnviDat entry "Long-term meteorological station Stillberg, Davos, Switzerland at 2090 m a.s.l.." The entry can be found under this link <https://www.envidat.ch/#/metadata/meteo-stillberg> and with this DOI <https://doi.org/10.16904/envidat.396>.

atmospheric-conditions

display_name: atmospheric-conditions

precipitation

display_name: precipitation

radiation

display_name: radiation

temperature-profiles

display_name: temperature-profiles

wind

display_name: wind

en: Long-term meteorological and snow station at 2090 m a.s.l., Stillberg, Davos, Switzerland (1975 - present)


en: functional-diversity beta-diversity european-alps phylogenetic-diversity zonation migclim plants global-change land-use-change species-distribution-models conservation taxonomic-diversity

en: Updated SDM outputs

en: Refined scenarios of plants distribution in the European Alps

en: Data Access

en:
This repository contains extensive data for the European Alps:
  - Observations of ~3,500 plant species
  - Climate (1-km), soil (100-m) and land cover predictors (1km); current and future scenarios (28 CMIP6-GCMs, 2 land cover change and 3 dispersal scenarios i.e., unlimited, no and realistic vegetation dispersal)
  - Flora migration rates (categorical) and ecological preferences (continuous indicator values)
  - Regional maps of barriers to migration and water bodies at 100-m resolution
  - Sampling effort, distance to roads and cities predictors at 100-m resolution
  - Present and future abundances over the study region at 1-km resolution (~2,000 species)
  - Present and future multifaceted and uniqueness of the European Alps' Flora at 1-km resolution
  - Present and future conservation recommendations at 1-km resolution (26 current and future strategies)
  - Phylogenetic data and functional traits of ~2,000 plants (raw data and classification trees)
  - All scripts, data and plots used for the analyses, including a singularity container (mini-linux) to run them

beta-diversity

display_name: beta-diversity

conservation

display_name: conservation

european-alps

display_name: european-alps

functional-diversity

display_name: functional-diversity

global-change

display_name: global-change

land-use-change

display_name: land-use-change

migclim

display_name: migclim

phylogenetic-diversity

display_name: phylogenetic-diversity

plants

display_name: plants

species-distribution-models

display_name: species-distribution-models

taxonomic-diversity

display_name: taxonomic-diversity

zonation

display_name: zonation

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Present and future multifaceted plant diversity, uniqueness and conservation in the European Alps


en: snow-distribution snow-depth canopy-height airborne-laser-scanning forest-structure

en: Readme

mimetype: text/plain

en: Canopy height maps

en: Canopy height maps of each of the three field areas Davos, Engadine and Grand Mesa

mimetype: application/zip

en: Terrain elevation maps

en: Digital elevation model computed from snow-off flights for each of the field areas Davos, Engadine and Grand Mesa

en: Snow depth maps

en: Snow depth maps from two snow-on flights at each of the three field areas Davos (March 20th and 31st 2017), Engadien (March 20th and 31st, 2017) and Grand Mesa (February 8th and 16th, 2017)

en:
This dataset includes snow depth, canopy height and terrain elevation maps of forest stands in the Grisons (CH) and at Grand Mesa (CO,USA) derived from airborne lidar. Data were acquired i) within a pilot mission of NASA's Airborne Snow Observatory in the Swiss Alps in March 2017 and ii) during NASA’s SnowEx campaign at Grand Mesa in February 2017. Snow depth maps are available for two dates separated by approx.1 week, and include an area of ca. 0.5km2 for each of the three sites Davos, Engadine and Grand Mesa.
All data were presented and analyzed in the publication 'Revisiting Snow Cover Variability and Canopy Structure within Forest Stands: Insights from Airborne Lidar Data' (Mazzotti et al., 2019, WRR, doi: 10.1029/2019WR024898). This publication must be cited when using this dataset.

Paper Citation:
 > _Giulia Mazzotti; William Ryan Currier; Jeffrey S. Deems; Justin M. Pflug; Jessica D. Lundquist; Tobias Jonas (2019). Revisiting Snow Cover Variability and Canopy Structure Within Forest Stands: Insights From Airborne Lidar Data. Water Resources Research, 55, 6198– 6216, [doi: 10.1029/2019WR024898](https://doi.org/10.1029/2019WR024898)._

airborne-laser-scanning

display_name: airborne-laser-scanning

canopy-height

display_name: canopy-height

forest-structure

display_name: forest-structure

snow-depth

display_name: snow-depth

snow-distribution

display_name: snow-distribution

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: ALS-based snow depth and canopy height maps from flights in 2017 (Grisons, CH and Grand Mesa, CO)


maintainer: Rebecca Mott

en: patchy-snow-covers terrestrial-laser-scanning riegl-vz6000 tls snow-ablation-rates

en: Digital Elevation Modell 2015

en: Snowmask 2015

en: Snowmask 2014

en: Digital Elevation Modell 2016

en: Snowmask 2016

en: Digital Elevation Modell 2014

en: Gletschboden test site

en: We recorded snow ablation maps with a terrestrial laser scanner (TLS, Riegl-VZ6000) at the Gletschboden area. The TLS position is located approximately 30 vertical meters above the Gletschboden area at a northerly exposed slope. In total 44 TLS measurement sets have been conducted in three consecutive years 2014-2016 (2014: 13 measurements; 2015: 17 measurements; 2016: 14 measurements). The TLS system has a single-point measurement frequency of 300 kHz and a beam divergence of 0.007°. This set-up allows a horizontal resolution of approximately 0.01 m in 100 m distance to the TLS position. One scan of the Gletschboden area lasts approximately 15 minutes. The travel time from the laser scanner towards the surface is recorded and afterwards converted into a point cloud of distances. 5 reflectors located at the Gletschboden area and in the closer surroundings were additionally scanned during each measurement to transform the point cloud from the scanner own coordinate system into Swiss coordinates. Additionally, orthophotos have been created by using pictures recorded from the TLS in order to provide snow mask maps. Snow and bare ground can be distinguished by the RGB color information of the orthophoto. Cells with blue band information greater than 175 were categorized as snow and all cells with values smaller or equal 175 were categorized as bare ground.

patchy-snow-covers

display_name: patchy-snow-covers

snow-ablation-rates

display_name: snow-ablation-rates

terrestrial-laser-scanning

display_name: terrestrial-laser-scanning

tls

display_name: tls

en: DISCHMEX - High-resolution daily snow ablation rates in an Alpine environment


greenland-shrubs-and-microclimate

maintainer: Nathalie Chardon

title_for_slug: greenland-shrubs-and-microclimate

en: climate arctic validation field-data sdm accessible-shrub-forest

en: GitLab Repository

en: Zip drive of GitLab repository contents (https://gitlab.com/nathaliechardon/gl_microclim).

en: Nuup Kangerlua

en:
 Collected July-August 2011-2013 (PI: Jacob Nabe-Nielsen)

These data collected July-August 2011-2013 (PI: Jacob Nabe-Nielsen). Please contact J. Nabe-Nielsen (jnn_at_ecos.au.dk) to request access to data on all surveyed shrub species. Available here are only data used in Chardon et al. 2022.

 COLUMN ABBREVIATIONS

 Metadata for 90 m spatial grid

year: sampling year

alt: average altitude of grid as recorded during field surveys [m]

long: WGS84 longitude

lat: WGS84 latitude

x_stere: longitude in Polar Stereographic (EPSG 4326)

y_stere: latitude in Polar Stereographic (EPSG 4326)

 Species presence [1] or absence [0] at grid level

pa_bena: _Betula nana_

pa_sagl: _Salix glauca_

 Shrub species cover (calculated from pin hits in 0.7 x 0.7 m frame, based on total of 25 hits) [%]

cov_bena: _Betula nana_ cover

cov_sagl: _Salix glauca_ cover

 Downscaled climate (time series 1984 – 2013)

tempjja: average maximum June-August temperature [ºC]

tempmax: yearly maximum temperature [ºC]

tempmin: yearly minimum temperature [ºC]

tempcont: yearly maximum – minimum temperature [ºC]

precipmam: cumulative March-May precipitation [mm]

precipjja: cumulative June-August precipitation [mm]

insoljja: average June-August insolation [MJ cm-2 yr-1]

 Topography and terrain wetness (calculated from)

twi: SAGA wetness index (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015)

slope: slope angle (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

asp: aspect (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

tcws: Tasseled Cap Wetness component (Sentinal images)

 Community characteristics

rich: shrub species richness averaged across pin-point frames per grid

shan: Shannon diversity (‘vegan’ package; Oksanen et al. 2019)

comp_bena: shrub competition on Betula nana (i.e. summed cover of non-_B. nana_ species) [% cover]

comp_sagl: shrub competition on Salix glauca (i.e. summed cover of non-_S. glauca_ species) [% cover]

en: Kangerluarsunnguaq

en:
 Collected August 2020 (PI: Nathalie Isabelle Chardon)

These data collected August 2020 (PI: Nathalie Isabelle Chardon). Please contact N. I. Chardon (nathalie.chardon_at_gmail.com) for individual quadrat (i.e. 1 m x 1 m) data, which are averaged at the 90 m spatial grid here.

 COLUMN ABBREVIATIONS

 Metadata for 90 m spatial grid

id: sampling zone and unique 90 m grid identifier

long: WGS84 longitude

lat: WGS84 latitude

x_stere: longitude in Polar Stereographic (EPSG 4326)

y_stere: latitude in Polar Stereographic (EPSG 4326)

date: sampling day.month.year

 Species presence [1] or absence [0] at grid level

alcr: _Alnus crispa_

bena: _Betula nana_

dila: _Diapensia lapponica_

emni: _Empetrum nigrum_

hahy: _Harimanella hypoides_

lopr: _Loiseleuria procumbens_

oxpa: _Oxycoccus palustre_

phca: _Phyllodoce caerulea_

rhod: _Rhododendron_ sp.

saar: _Salix arctica_

sagl: _Salix glauca_

sahe: _Salix herbacea_

vaul: _Vaccinium uliginosum_

drin: _Dryas integrifolia_

thpr: _Thymus praecox_

 Habitat characteristics [% cover]

shrub: all shrub species

gram: graminoids

forb: forbs

bryo: bryophytes

lich: lichens

litt: litter

bare: bare ground

stone: stones (> 2 cm)

org: organic crust

 Shrub species height (maximum vegetative height) [mm] and cover (estimated in 1x1 m quadrat) [%]

alcr_c: _Alnus crispa_ cover

alcr_h: _Alnus crispa_ height

bena_c: _Betula nana_ cover

bena_h: _Betula nana_ height

dila_c: _Diapensia lapponica_ cover

dila_h: _Diapensia lapponica_ height

emni_c: _Empetrum nigrum_ cover

emni_h: _Empetrum nigrum_ height

hahy_c: _Harimanella hypoides_ cover

hahy_h: _Harimanella hypoides_ height

lopr_c: _Loiseleuria procumbens_ cover

lopr_h: _Loiseleuria procumbens_ height

oxpa_c: _Oxycoccus palustre_ cover

oxpa_h: _Oxycoccus palustre_ height

phca_c: _Phyllodoce caerulea_ cover

phca_height: _Phyllodoce caerulea_ height

rhod_c: _Rhododendron_ sp. cover

rhod_h: _Rhododendron_ sp. height

saar_c: _Salix arctica_ cover

saar_h: _Salix arctica_ height

sagl_c: _Salix glauca_ cover

sagl_h: _Salix glauca_ height

sahe_c: _Salix herbacea_ cover

sahe_h: _Salix herbacea_ height

vaul_c: _Vaccinium uliginosum_ cover

vaul_h: _Vaccinium uliginosum_ height

drin_c: _Dryas integrifolia_ cover

drin_h: _Dryas integrifolia_ height

 Community characteristics

rich_pa: shrub species richness at grid level

rich: shrub species richness averaged across 3 1x1 m sampling quadrats per grid

shan: Shannon diversity (‘vegan’ package; Oksanen et al. 2019)

comp_bena: shrub competition on _Betula nana_ (i.e. summed cover of non-_B. nana_ species) [% cover]

comp_sagl: shrub competition on _Salix glauca_ (i.e. summed cover of non-_S. glauca_ species) [% cover]

ht_cwm: maximum shrub canopy height (i.e. community weighted mean by abundance of maximum shrub height) [mm]

 Topography and terrain wetness (calculated from)

tcws: Tasseled Cap Wetness component (Sentinal images)

slope: slope angle (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

twi: SAGA wetness index (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015)

asp: aspect (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

 Downscaled climate (time series 1984 – 2013)

insoljja: average June-August insolation [MJ cm-2 yr-1]

precipmam: cumulative March-May precipitation [mm]

tempcont: yearly maximum – minimum temperature [ºC]

tempmin: yearly minimum temperature [ºC]

precipjja: cumulative June-August precipitation [mm]

tempjja: average maximum June-August temperature [ºC]

tempmax: yearly maximum temperature [ºC]

en:
 Study Aim

We collected these data to alternatively train and validate high resolution (~ 90 m) Species Distribution Models (SDMs) and Species Abundance Models (SAMs) for _Betula nana_ L. (dwarf birch, Betulaceae) and _Salix glauca_ L. (grey willow, Salicaceae) in Southwest Greenland to assess how well such models can predict local-scale patterns.

 Data Description

Individual (presence-absence, abundance, maximum vegetative height) and community (species composition, maximum canopy height) shrub data for two fjords near Nuuk, Southwest Greenland. Also provided are corresponding downscaled climate data as well as calculated topographic and terrain wetness indicator variables.

 Nuup Kangerlua (Godthåbsfjord)

_Betula nana_ and _Salix glauca_ presence-absence, abundance, community species richness

 Kangerluarsunnguaq (Kobbefjord)

Shrub presence-absence, abundance, maximum vegetative height, community composition, maximum shrub canopy height

 Methods

 Field survey in Nuup Kangerlua

We conducted a stratified systematic plant survey along the length of Nuup Kangerlua (NK) fjord in Soutwesth Greenland (Fig. 1 in Chardon et al. 2022; following Nabe-Nielsen et al., 2017). At five distinct sites, we sampled along elevational gradients to collect data on presences, absences, abundance, and species composition of all woody species using a 0.7 x 0.7 m pin-point frame (Fig. 1e in Chardon et al. 2022). For model training, we converted these pin-point data to percent cover estimates based on the number of pins dropped (n = 25 per plot) and averaged them across the 119 spatio-climatic grids (see next section) corresponding to the plot locations (for details see Appendix S2 in Chardon et al. 2022).

 Field survey in Kangerluarsunnguaq

We conducted a random stratified plant survey in Kangerluarsunnguaq (K) fjord in Southwest Greenland. We used a preliminary Species Abundance Model trained with summed pin counts of _Betula nana_ in NK fjord (see Fig. S1.3 in Chardon et al. 2022) to stratify the ~ 27 x 17 km fjord landscape into low, medium, and high abundances classes. We randomly selected 90 x 90 m spatio-climatic grids to survey in each class for a total of 200 grids, ensuring that they were accessible by foot or boat (for details see Appendix S2 in Chardon et al. 2022). Within each grid, we sampled within three 1 m2 quadrats arranged in a randomly rotated equilateral triangle centered on the mid-point of the cell. We used a gridded sampling quadrat with 1% delineations (Fig. 1h in Chardon et al. 2022) to record woody species presences, absences, and composition, estimated percent cover, and measured maximum shrub species vegetatitve height. At every plot, we also visually scanned the area in a 20 m radius from the plot and recorded the presence of any additional shrub species to estimate grid-level species richness. As in NK fjord, we averaged these data at the grid level (for details see Appendix S2 in Chardon et al. 2022).

 Biotic variables

We calculated biotic microscale variables from the plant survey data collected in NK and K fjords. We calculated shrub species richness, diversity, and competition (i.e. sum of non-B. nana or non-S. glauca pin hits or percent cover). In K fjord, we also calculated canopy height as the community weighted mean (by abundance) of maximum vegetative shrub height.

 Climate variables

We computed high resolution temperature, precipitation, and insolation for local scale data for the study area by statistically downscaling climate time series (1982 - 2013) from the monthly CHELSA data (Karger et al. 2017). We downscaled these data from 30 arc sec (~ 400 m at the latitude of our study) to our target grid size of ~ 90 m with geographic weighted regression and using the MEaSUREs Greenland Ice Mapping Project (GIMP) Digital Elevation Model (DEM) v. 1 (Howat et al., 2014, 2015). We then calculated 30-year averages of the climate parameters: average summer (June – August) maximum temperature, yearly maximum temperature, yearly minimum temperature, temperature continentality (yearly max. - min. temperatures), cumulative Spring (March – May) precipitation, cumulative summer precipitation, and average summer incident solar radiation (henceforth, insolation) (for calculation details see Appendices S2, S3 in Chardon et al. 2022 and Appendix S2 in von Oppen et al. 2021).

 Topography and terrain wetness indicator variables

We calculated several topographic and terrain wetness indices at a local scale. We derived slope, aspect, and the SAGA wetness index (hereafter TWI; Boehner et al., 2002; Boehner and Selige, 2006) from the GIMP DEM. TWI is a measure of how ‘wet’ an area is, based on water drainage from the surrounding landscape. We also calculated the tasseled cap wetness component (hereafter TCW, Crist and Cicone 1984) from satellite images (for details see Appendices S2, S3 in Chardon et al. 2022) as an alternative measure of wetness.

 Computer code

Attached as zip file and available on GitLab (https://gitlab.com/nathaliechardon/gl_microclim)

 Third-party data

Data used to calculate climate, topography, and terrain wetness indicator variables are publicly available (see Appendix S2 in Chardon et al. 2022 for all data references).

accessible-shrub-forest

display_name: accessible-shrub-forest

arctic

display_name: arctic

climate

display_name: climate

field-data

display_name: field-data

sdm

display_name: sdm

validation

display_name: validation

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Greenland shrubs and microclimate


en: meteorology temperature par relative-humidity climate-change wind-speed swiss-forest-lab meteo precipitation long-term

en: Data plot of the field station (NEF)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Field station data (NEF)

en: Data file.

en: Site aerial photo (Neunkirch)

en: Site aerial photo from both Neunkirch stations. Source: Google. 2016. Site aerial photo from both Neunkirch stations. Retrieved November 11, 2016, from https://www.google.ch/maps

mimetype: image/jpeg

en: Site photo of the field station (NEF)

en: Site photo of the field station from the side.

en: Site photo of the forest station (NEB)

en: Site photo of the forest station from below (viewing upwards the slope).

en: Data plot of the forest station (NEB)

en: Forest station data (NEB)

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Neunkirch in Switzerland where one station is located within a natural deciduous forest stand (NEB) with European beech (_Fagus sylvatica_; 160 yrs), sycamore maple (_Acer pseudoplatanus_; 160 yrs) and lime trees (_Tilia sp._; 110 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, NEF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Neunkirch is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Neunkirch, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


maintainer: Nander Wever

en: microstructure snow-density-profile snowmicropen antarctica snow-density

en: SnowMicroPen pts files and processed txt files

en: Zip archive containing the acquired *.pts files (binary files recorded by the SnowMicroPen), and the converted *.txt files using the SMP.ipynb jupyter notebook (see the python code in the other resources in this dataset)

en: Jupyter notebook for processing the SnowMicroPen files.

en: Python code exported from the Jupyter notebook for processing the SnowMicroPen files

en: List of SnowMicroPen measurements

en: List of all SnowMicroPen measurements, including date and location, and processing status. This list has been generated by the python code (see other resources in this dataset).

en: Manual snow pits and other snow density measurements

en: Documentation SnowMicroPen measurements

en: This *.zip archive contains all available documentation of the SnowMicroPen measurements, including the mapping of the SMP measurements in the terrestrial laser scan field at PEA (see documentation for 20161220) and at the Hammarryggen Ice Rise (see documentation for 20190104 and 20190111).

en: SnowMicroPen (SMP) measurements and manual snowpits from Dronning Maud Land, East Antarctica. Measurements were taken in the vicinity of the Belgium Princess Elisabeth Station (PEA), in a transect towards the coast, and on the Lokeryggen and Hammarryggen Ice Rises near the coast. Measurements were taken during 3 individual campaigns in the 2016-2017, 2018-2019 and 2019-2020 field seasons.

antarctica

display_name: antarctica

microstructure

display_name: microstructure

snow-density

display_name: snow-density

snow-density-profile

display_name: snow-density-profile

snowmicropen

display_name: snowmicropen

educ

en: Education, culture and sport

en: EnviDat: the Environmental Data Portal

en: SnowMicroPen measurements and manual snowpits from Dronning Maud Land, East Antarctica


en: indicator-values mountains fire europe climate-change climate forest-fire climate-indicators meteorological-data european-alps

en: Data access

en: This dataset contains the Fire Weather Index for Hydrological Bavaria from 1980 - 2099 as stated in the paper "Climate change impacts on regional fire weather in heterogeneous landscapes of Central Europe" published in Natural Hazards and Earth System Sciens (NHESS) 2023. The dataset contains daily Fire Weather Index values for all 50 members (subfolders of the dataset) of the CRCM5-LE (11 km spatial resolution) from 1980 to 2099 over the domain of Hydrological Bavaria. Please cite this dataset as the publication: Miller, J., Böhnisch, A., Ludwig, R., & Brunner, M. I. (2023). Climate change impacts on regional fire weather in heterogeneous landscapes of Central Europe. Natural Hazards and Earth System Sciences Discussions, 1-25. doi: 10.5194/nhess-2023-51.

climate

display_name: climate

climate-indicators

display_name: climate-indicators

europe

display_name: europe

european-alps

display_name: european-alps

fire

display_name: fire

forest-fire

display_name: forest-fire

indicator-values

display_name: indicator-values

meteorological-data

display_name: meteorological-data

mountains

display_name: mountains

en: Fire Weather Index for Hydrological Bavaria from 1980-2099 derived from the 50 member CRCM5-LE


maintainer: Mathias Bavay

en: precipitation-sum air-pressure shortwave-radiation treeline relative-humidity soil-temperature snow-depth wind-speed air-temperature dew-point-temperature wind-direction stillberg

en: The Davos Stillberg meteorological data (Stillberg_meteo_v1.zip) consists of timeseries from five meteorological stations operated at the Stillberg treeline ecological research site. Metadata are provided in the folder 'Stillberg_meteo_metadata' and the data in the folder 'Stillberg_meteo_data' with subfolders for the three quality levels 'raw_standardized', ‘raw_edited’, and ‘filtered’.

en: The Davos Stillberg meteorological data (Stillberg_meteo_v1.1.zip) consists of timeseries from five meteorological stations operated at the Stillberg treeline ecological research site. Metadata are provided in the folder 'Stillberg_meteo_metadata' and the data in the folder 'Stillberg_meteo_data' with subfolders for the three quality levels 'raw_standardized', ‘raw_edited’, and ‘filtered’.

en: The Davos Stillberg meteorological data (Stillberg_meteo_v2.0.zip) consists of timeseries from five meteorological stations operated at the Stillberg treeline ecological resea...

en:
 Background information
The Stillberg ecological treeline research site is located in the transition zone between the relatively humid climate of the Northern Alps and the continental climate of the Central Alps. In 1975, 92,000 seedlings of the high-elevation conifer species *Larix decidua* Mill. (European larch), *Pinus cembra* L. (Cembran pine), and *Pinus mugo* ssp. *uncinata* (DC.) Domin (mountain pine) were systematically planted across an area of 5 hectares along an elevation gradient of about 150 metres, with the aim to develop ecologically, technically, and economically sustainable afforestation techniques at the treeline to reduce the risk of snow avalanches. In the course of time, additional research aspects gained importance, such as the ecology of the treeline ecotone under global change. Alongside the ecological long-term monitoring of the afforestation, several meteorological stations have recorded local meteorological conditions at the Stillberg research site. Here, we provide the Davos Stillberg meteorological timeseries of five stations from 1975 (01-01-1975), the year of the afforestation establishment, until the end of the year 2022 (31-12-2022).

 Station description
The five meteorological stations were all installed at the same location (46°46′25.015″N 9°52′01.792″E) at 2090 m a.s.l., in the lower part of the afforestation area. In general, the five stations were operated sequentially (Stillberg_meteo_metadata_stations_v1.csv). However, there are some overlapping time periods when more than one station was operated in parallel. The stations have recorded environmental parameters, such as air and soil temperature, dew point temperature, air pressure, relative humidity, wind direction and velocity, radiation, precipitation, and snow depth (Stillberg_meteo_metadata_parameters_v1.csv). The meteorological measurements were recorded hourly from 1975 until 1996 and have been recorded in 10-minute intervals since 1997.

 Data description
We processed the Davos Stillberg meteorological timeseries with the MeteoIO meteorological data pre-processing library (Bavay & Egger, 2014). Data files are provided for each station and quality level separately and named according to the station (see ‘Stillberg_meteo_metadata_stations_v1.csv’). From the raw data in their original formats, we generated three data quality levels: raw standardized (folder ‘raw_standardized’), edited (folder ‘raw_edited’) and filtered (folder ‘filtered’). The processing level is indicated in the headers of the data files. The whole processing protocol is described in a set of human-readable configuration files that are used by MeteoIO to generate the required data quality levels. This improves long-term reproducibility (Bavay et al., 2022), as the data could be regenerated in the future, even using a completely different software, to account for additional data points or to introduce new data corrections. The first quality level (raw standardized) is generated by parsing the original data files and interpreting them in order to convert all data points to a common format and meteorological parameter naming scheme, while excluding unreadable or duplicated data lines. The generated data files are derivatives of CSV files, with a standardised header that contains the metadata that are necessary to interpret and use the data (use metadata) and to populate a data index (search metadata). The latter is a textual implementation of the Attribute Convention for Data Discovery (ACDD) metadata standard (Attribute Convention for Data Discovery 1-3, 2022). The second quality level (edited) builds on the raw data by performing low-level data editing, such as removing some data periods that are known to be unusable (often based on maintenance records or anecdotal evidence) or applying undocumented calibration factors (for example, when there seems to be an obvious offset on a measured parameter for a period between two documented maintenance operations). The third quality level is generated by applying statistical filters on the data (per station and per meteorological parameter) to exclude presumably wrong values. We did not perform gap filling, as no single strategy could be relied upon that would work best for all possible data usage scenarios.

air-pressure

display_name: air-pressure

air-temperature

display_name: air-temperature

dew-point-temperature

display_name: dew-point-temperature

precipitation-sum

display_name: precipitation-sum

relative-humidity

display_name: relative-humidity

shortwave-radiation

display_name: shortwave-radiation

snow-depth

display_name: snow-depth

soil-temperature

display_name: soil-temperature

stillberg

display_name: stillberg

treeline

display_name: treeline

wind-direction

display_name: wind-direction

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Long-term meteorological station Stillberg, Davos, Switzerland at 2090 m a.s.l.


biogas-aus-hofdunger-in-der-schweiz

title_for_slug: biogas-aus-hofdunger-in-der-schweiz

en: bioenergy manure review switzerland biogas

en: Biogas aus Hofdünger in der Schweiz

en: Ziel dieses Whitepapers ist es, Entscheidungsträgern, Verwaltungen und Stakeholdern die aktuellsten Forschungsergebnisse zur Verfügung zu stellen, um die optimale Nutzung von Bioenergie aus Hofdünger in der Schweizer Energiewende zu fördern. Zu diesem Zweck werden die Ergebnisse des Schweizer Kompetenzzentrums für Bioenergieforschung - SCCER BIOSWEET - zusammengefasst und in einem breiteren Kontext dargestellt. Wenn nichts anderes erwähnt wird, beziehen sich die Ergebnisse auf die Schweiz und im Falle der Ressourcen auf die heimischen Biomassepotenziale.

bioenergy

display_name: bioenergy

biogas

display_name: biogas

manure

display_name: manure

review

display_name: review

switzerland

display_name: switzerland


maintainer: Paraskevi Georgakaki

en: ice-crystal-number-concentration blowing-snow liquid-water-content ice-water-content secondary-ice-production jungfraujoch swiss-alps wrf

en: Observational data

en:
The .zip file contains 6 .csv files including all microphysical measurements taken at the Jungfraujoch station during the two periods of interest:

* 25-28 January 2014 : northwesterly-winds (NW)
* 29 January - 1 February 2014 : southeasterly-winds (SE)

The total Ice Crystal Number Concentration (ICNC; reported in L⁻¹) is measured by the two-dimensional stereo hydrometeor spectrometer (2D-S; Lawson et al., 2006) over the size range 10-1280 μm. The total ice water content (IWC; reported in gm⁻³) is also derived by the 2D-S data using the Brown and Francis (1995) mass-diameter relationship. Finally, the quantification of the liquid water content (LWC; reported in gm⁻³) is based on the liquid droplet size distribution data derived from a DMT cloud droplet probe (CDP; Lance et al., 2010) over the size range 2-50 μm. The frequency of the measurements in the .csv files is 30 min, to match the output frequency of the model. Datetime is also reported in the files (DD/MM/YYYY h:mm) in UTC.

Acknowledgment: Collection and pre-processing of the microphysical measurements has been performed by Gary Lloyd (gary.lloyd@manchester.ac.uk). More details about the instrumentation during the CLACE2014 campaign can be found in Lloyd et al. (2015).

en: WRF outputs

en:
The .zip file contains all the NetCDF outputs produced by the mesoscale Weather Research and Forecasting (WRF) model (version: 4.0.1). Two case studies were simulated in this study, between 25-28 January 2014 (00:00 UTC) and 29 January - 1 February 2014 (00:00 UTC), respectively. The former is denoted as "NW" and the latter as "SE", owing to the prevailing wind conditions at the Jungfraujoch (JFJ) station.

The outputs come from the innermost domain of the simulations with a spatial resolution of 1 km and are extracted from the nearest to JFJ model grid point (46.55°N 7.98°E). The dimensions of each model variable is [145,100], which corresponds to time and height, respectively. The frequency of the outputs is 30 min. Note that the first 24 hours of each simulation (i.e., the first 48 outputs) were considered spin up time.

The following sets of sensitivity simulations were presented in this study:

* CNTRL_NW.nc, CNTRL_SE.nc : Sensitivity simulations performed with the default version of WRF
* DS_PHILL_NW.nc, DS_PHILL_SE.nc : Sensitivity simulations including a description of the droplet shattering process following Phillips et al. (2018)
* DS_SULL_NW.nc, DS_SULL_SE.nc : Sensitivity simulations including a description of the droplet shattering process following Sullivan et al. (2018)
* PHILL_NW.nc, PHILL_SE.nc : Sensitivity simulations including a description of the ice-ice collisional break-up process following Phillips et al. (2017)
* TAKAH_NW.nc, TAKAH_SE.nc : Sensitivity simulations including a description of the ice-ice collisional break-up process following Sullivan et al. (2018) based on Takahashi et al. (1995)
* TAKAHrim_NW.nc, TAKAHrim_SE.nc : Same set-up as before but applied only to collisions between rimed ice particles
* BIPS_Xk0_DY_NW.nc, BIPS_Xk0_DY_SE.nc : Sensitivity simulations including a source of Xk0 (either 10.0 or 100.0 L⁻¹) ice crystals with sizes of DY (either 10 or 100 μm) in the first atmospheric level of the model
* BIPS100_PHILL_NW.nc, BIPS100_PHILL_SE.nc : Sensitivity simulations where the combined effect of blowing snow and ice-ice collisional break-up is examined

en:
This repository contains all WRF model outputs and observational data sets used for the paper:
Georgakaki, P., Sotiropoulou, G., Vignon, É., Billault-Roux, A.-C., Berne, A., and Nenes, A.: Secondary ice production processes in wintertime alpine mixed-phase clouds, Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2021-760, in review, 2021.

blowing-snow

display_name: blowing-snow

ice-crystal-number-concentration

display_name: ice-crystal-number-concentration

ice-water-content

display_name: ice-water-content

jungfraujoch

display_name: jungfraujoch

liquid-water-content

display_name: liquid-water-content

secondary-ice-production

display_name: secondary-ice-production

swiss-alps

display_name: swiss-alps

wrf

display_name: wrf

educ

en: Education, culture and sport

en: Data for the publication "Secondary ice production processes in wintertime alpine mixed-phase clouds"


carabid-beetles-in-forests

maintainer: Martin K. Obrist

title_for_slug: carabid-beetles-in-forests

en: carabidae arthropoda forest running-beetles coleoptera trapping insects

en: Tab-delimited data of the according sql query.

en: SQL query used to extract the data from fauna database.

en: Data extract in TAB-delimted format. First row is header, first column is counter.

en: Data query used on Fauna Database to retrieve the submitted data.

en:
Carabidae data from all historic up to the recent projects (21.10.2019) of WSL, collected with various methods in forests of different types.

Version 2 ('FIDO_global_extract 2019-11-22_18-11-24 WSL-Forest-Carabidae') contains additional data field PROJ_FALLENBEZEICHNUNG.

Data are provided on request to contact person against bilateral agreement.

arthropoda

display_name: arthropoda

carabidae

display_name: carabidae

coleoptera

display_name: coleoptera

forest

display_name: forest

insects

display_name: insects

running-beetles

display_name: running-beetles

trapping

display_name: trapping

envidat

en: EnviDat: the Environmental Data Portal

en: Carabid beetles in forests


en: soil-nutrients plant-community treeline-ecosystems plant-traits climate-change biomass-dynamics

en: Data on soils, tree biomass, plant nutrients, rock mineralogy, climate of treeline ecosystems in Khibiny mountains, Kola Penninsula, Russia

en: Data on soil nutrients and charcteristics, tree and understory biomass, foliage nutrients, mineralogy, soil temperature and moisture along an elevation gradient from boreal forest to mountain tundra in teh Khibiny mountains (Kola Penninsula, Russia). Samples were taken along two gradients at 7 elevation level either under tree canopy (tree) and in open areas (open).

biomass-dynamics

display_name: biomass-dynamics

climate-change

display_name: climate-change

plant-community

display_name: plant-community

plant-traits

display_name: plant-traits

soil-nutrients

display_name: soil-nutrients

treeline-ecosystems

display_name: treeline-ecosystems

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


maintainer: Jonas Stillhard

en: permanent-forest-plot-data forest-dynamics dem long-term-data-sets stand-inventory-data forest carpathian-biosphere-reserve fagus-sylvatica primeval-beech-forest forest-structure

en: Dataset

en: Data description

en: Available online on publishers website

en:
In 2000, a permanent forest plot of 10 ha has been established in the core zone of the primeval beech forest of Uholka.
 All living and dead trees with a diameter at breast height (DBH) ≥ 60 mm were identified to species, DBH measured, stems tagged and mapped.
Since then, the plot has been remeasured in 2005, 2010, and 2015. In total, 4,820 individual trees were measured with 14,116 individual measurements throughout all four inventories.
In spring 2018, an Airborne Laser Scan was carried out, covering the Uholka‐Shyrokyi Luh forest. This data set allows us to derive a high‐resolution digital elevation model (DEM) of the plot area.
The data set allows for important insights into the development and the spatial and temporal dynamics of primeval beech forests.

carpathian-biosphere-reserve

display_name: carpathian-biosphere-reserve

dem

display_name: dem

fagus-sylvatica

display_name: fagus-sylvatica

forest-dynamics

display_name: forest-dynamics

forest-structure

display_name: forest-structure

long-term-data-sets

display_name: long-term-data-sets

permanent-forest-plot-data

display_name: permanent-forest-plot-data

primeval-beech-forest

display_name: primeval-beech-forest

stand-inventory-data

display_name: stand-inventory-data

en: Stand inventory data from the 10‐ha forest research plot in Uholka, Ukraine


en: elasticity geometrical x-ray-tomography fem microstructure anisotropy crystallographic

en:
The study aims to determine the effective elastic properties of snow, firn, and bubbly ice based on microstructural quantities. Anisotropy, one of these quantities (the other being ice volume fraction) in snow and ice, has two types: geometrical and crystallographic, resulting in snow's macroscopic anisotropic elastic behavior. The research focuses on the impact of geometrical anisotropy on potential ice volume fractions in snow and ice. 391 micro-CT images from various locations, including laboratories, the Alps, the Arctic, and Antarctica, were analyzed to achieve this.
 The analysis involved microstructure-based finite element simulations, which inherently consider microstructure and calculate the elasticity tensor. Hashin-Shtrikman bounds were utilized to predict the elastic properties of the microstructure samples. These bounds effectively captured the nonlinear interplay between geometrical anisotropy, captured by the Eshelby tensor and density. HS bounds have the advantage of the correct limiting behavior for low to high-ice volume fractions.
 We derived parameterization for five transversely isotropic elasticity tensor components, requiring only two free parameters. This parameterization was valid for ice volume fractions ranging from 0.06 to 0.93. The analysis employing the Thomsen parameter highlighted the dominance of geometrical anisotropy until an ice volume fraction of 0.7. However, to fully comprehend the elasticity of bubbly ice, a comprehensive approach is necessary to integrate coupled elastic theories that account for both geometrical and crystallographic anisotropy.
This dataset includes a Jupyter notebook with all the necessary functions required to predict the elasticity tensor of snow for the given ice volume fraction and anisotropy. Also, the code contains the least squares optimization function to compute the elasticity tensor for the six components of stress and strain. For example, we consider our dataset to calculate the samples' elasticity tensor and reproduce Fig. 7 from the paper. We take the stress and strain values obtained from load states as input for this example.
Also, a .csv file contains all the microstructural information: ice volume fraction, anisotropy, correlation functions, voxels size, and no. of voxels of the samples and the elasticity tensor obtained from finite element simulations and from present work parameterization.

anisotropy

display_name: anisotropy

crystallographic

display_name: crystallographic

elasticity

display_name: elasticity

fem

display_name: fem

geometrical

display_name: geometrical

microstructure

display_name: microstructure

x-ray-tomography

display_name: x-ray-tomography

educ

en: Education, culture and sport

en: Effective, anisotropic elasticity tensor of snow, firn, and bubbly ice


data-konzeptionelles-systemmodell

maintainer: Matthias Bürgi

title_for_slug: data-konzeptionelles-systemmodell

en: climate-change policy-action landscape-change scenarios qualitative-research

en:
This folder contains documents relevant to the project step Konzeptionelles Systemmodell. It specifically contains the following documents:

1. 0201_Konzeptionelles Systemmodell_20221027: This document is the final version of the Konzeptionelles Systemmodell. The underlying structure of the Konzeptionelles Systemmodell is explained in chapter 4.4 of the document 0202_Masterarbeit Elena Siegrist_UniBern_Herbstsemester 2022 also deposited in this folder. The document contains 3 sheets. The sheet "Bausteine" shows the different possible options for table columns of the type Bausteine (see chapter 4.4 of Masterarbeit), the sheet "Direkte Effekte" contains identified direct impact pathways and the sheet "Indirekte Effekte" contains identified indirect impact pathways.

2. 0202_Masterarbeit Elena Siegrist_UniBern_Herbstsemester 2022: This document is the Master Thesis of Elena Grace Siegrist submitted to and accepted by the University of Bern in the Autumn Semester 2022. Chapter 4.4 of the document explains the underlying structure of the Konzeptionelles Systemmodell.

3. 0203_Literaturverzeichnis_konzeptionelles Systemmodell_20221026: This document lists all literature and documents cited in the Konzeptionelle Systemmodell.

climate-change

display_name: climate-change

landscape-change

display_name: landscape-change

policy-action

display_name: policy-action

qualitative-research

display_name: qualitative-research

scenarios

display_name: scenarios

en: Data Konzeptionelles Systemmodell


digitizing-historical-plague

maintainer: Christian Ginzler

title_for_slug: digitizing-historical-plague

en: plague-inventory yersinia-pestis palaeo-epidemiology bubonic-plague black-death historical-plague plague-outbreaks plague-mapping

en: We present newly digitized data on 6,929 plague outbreaks that occurred between 1347 and 1900 AD across Europe. The data base on an inventory initially published 1976. For georeferencing the information of Tele Atlas 2009 was used. The coordinates are in the reference systems ETRS89 and WGS84.

black-death

display_name: black-death

bubonic-plague

display_name: bubonic-plague

historical-plague

display_name: historical-plague

palaeo-epidemiology

display_name: palaeo-epidemiology

plague-inventory

display_name: plague-inventory

plague-mapping

display_name: plague-mapping

plague-outbreaks

display_name: plague-outbreaks

yersinia-pestis

display_name: yersinia-pestis

envidat

en: EnviDat: the Environmental Data Portal

en: Digitizing historical plague


en: caribbean-region fish-composition curacao coral-reefs environmental-dna fish teleo marine edna

en: Data access

en:
Fish taxonomic, functional and phylogenetic composition variations recovered from eDNA metabarcoding along the coast of Curacao

In February 2020, we collected a total of 20 water samples, from 10 stations, with two filtration replicates per station, in the two investigated coastal areas. Each station consisted of a transect of 2 km at an overall constant distance from the coast. We recorded the GPS coordinates at the start and end of the transect, which we used to map the transect positions. We conducted eDNA sampling by using a filtration device composed of an Athena® peristaltic pump (Proactive Environmental Products LLC, Bradenton, Florida, USA; nominal flow of 1.0 L/min), a VigiDNA® 0.20 μM cross-flow filtration capsule (SPYGEN, le Bourget du Lac, France) and disposable sterile tubing for each filtration capsule. We performed two filtration replicates in parallel on each side of a boat, at each station, for 30 min corresponding to a volume of ~30 L of water filtered by each capsule. At the end of each filtration, the water inside the capsules was emptied, and we filled the capsules with 80 ml of CL1 Conservation buffer (SPYGEN, le Bourget du Lac, France) and stored at room temperature. We followed a strict contamination control protocol in both field and laboratory stages (Valentini et al., 2016). Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).

caribbean-region

display_name: caribbean-region

coral-reefs

display_name: coral-reefs

curacao

display_name: curacao

edna

display_name: edna

environmental-dna

display_name: environmental-dna

fish

display_name: fish

fish-composition

display_name: fish-composition

marine

display_name: marine

teleo

display_name: teleo

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Environmental DNA Marine Curacao 2020


en: simple-sequence-repeats population-genetics switzerland trichopria-drosophilae nuclear-microsatellite-markers multilocus-genotypes biological-control drosophila-suzukii

en: Table comprising all pertinent information for multiplex PCRs of species-specific nuclear microsatellite makers for Trichopria drosophilae, comprising all 21 newly developed markers, details on full sequences with GenBank accession numbers, primer sequences (including labeling and pig-tails), and repeat motives. PCRs with respective annealing temperatures (AnnealingTemp) refer to Type-It Multiplex PCR Kit (Qiagen, Hilden, Germany).

en: Multilocus genotypes (biallelic coding for 21 nuclear microsatellites) of Trichopria drosophilae described in Gugerli et al. Agrarforschung Schweiz 2019. Missing data denoted as '999'. Population codes (PopNo) are the following: 1, Vezia; 3, Contone ; 5, Davesco; 6, Corteglia; 7, Mezzana; 8, Stabio; 9, Gordola; 10, Sementina; 12, Brusata di Novazzano; 14, Monteggio; 16, Giubiasco; 17, ComoBP; 18, VD; 19, Weil_D; 20, Dossenheim; 21, BioPlanet_Como. Coordinates (CoordCH_E, CoordCH_N) refer to the Swiss coordinates system CH1903.

en:
 Nuclear microsatellite markers and genotype data for _Trichopria ddrosophilae_

This data set comprises (i) the characteristics of a set of 21 species-specific nuclear microsatellites for PCR amplification in _Trichopria drosophilae_ (ii) and genotype data for samples collected in southern Switzerland (Canton of Ticino), with few reference samples from Canton of Vaud, southern Germany, and northern Italy (lab-reared population).
Markers were developed by Ecogenics GmbH, Balgach (Switzerland), using MiSeq Nano 2x250 v2 format (on a mix of 10 individuals). Multiplex PCR assays for multilocus genotyping were established by Ecological Genetics (WSL Birmensdorf), and population genetic analyses are found in Gugerli et al., Agrarforschung Schweiz 2019.

biological-control

display_name: biological-control

drosophila-suzukii

display_name: drosophila-suzukii

multilocus-genotypes

display_name: multilocus-genotypes

nuclear-microsatellite-markers

display_name: nuclear-microsatellite-markers

population-genetics

display_name: population-genetics

simple-sequence-repeats

display_name: simple-sequence-repeats

switzerland

display_name: switzerland

trichopria-drosophilae

display_name: trichopria-drosophilae

en: Nuclear microsatellite markers for Trichopria drosophilae, parasitoid wasp on Drosophila suzukii


maintainer: Leonie Schönbeck

en: fluorescence pinus-sylvestris acclimation photosynthesis vpd gas-exchange drought

en: Pfynwald gas exchange

en:
Full dataset of Pfynwald gas exchange data taken in the period from June 2013 to October 2020.
All metdata can be found in attached documents.
Data uploaded after quality control using guidelines by Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods ACi curves

en:
Parameters and methods for CO2 response curves of Photosynthesis.

Metatdata format by
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods fluorescence

en:
Parameters and methodology for Fluorescence measurements

Metadata format from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Variable names and units

en: Variable names, description and units for the Pfynwald Gas exchange data

en: Instrument details

en:
Instrument details for all LiCor instruments used during collection of dataset.

Metatdata created following guidelines from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods diurnal measurements

en:
Parameters and methodology for diurnal measurements

Metadata format from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods light response

en: Methods and parameters for light response curves

en: Methods survey

en: Parameters and methods for point measurements / survey measurements

en:
Gas exchange was measured on control, irrigated and irrigation-stop trees at the irrigation experiment Pfynwald, during the years 2013, 2014, 2016-2020. The measurement campaigns served different purposes, resulting in a large dataset containing survey data, CO2 response curves of photosynthesis, light response curves of photosynthesis, and fluorescence measurements. Measurements were done with LiCor 6400 and LiCor 6800 instruments. Until 2016, measurements were done on excised branches or branches lower in the canopy. From 2016 onwards, measurements were done in the top of the canopy using fixed installed scaffolds.
All metadata can be found in the attached documents.

acclimation

display_name: acclimation

drought

display_name: drought

fluorescence

display_name: fluorescence

gas-exchange

display_name: gas-exchange

photosynthesis

display_name: photosynthesis

pinus-sylvestris

display_name: pinus-sylvestris

vpd

display_name: vpd

educ

en: Education, culture and sport

en: 2013-2020 gas exchange at Pfynwald