maintainer: Elisabeth D. Hafner

en: avalanche avalanche-mapping remote-sensing aerial-imagery avalanche-activity

en: 1999 avalanche data

en:
**for English see below**
Dieser Datensatz enthält die **Umrisse der 11'120 Lawinen** die aus schwarzweiss Luftbildern, welche zwischen dem 25.2.1999 und dem 1.3.1999 aufgenommen wurden, kartiert wurden. Die Lawinenumrisse haben verschiedene Attribute welche im **beigelegten Beispielschlüssel** beschrieben sind (Beispielschluessel_1999_d.pdf).
Es gibt drei Shapefiles:
* **avalanches1999_endversion1.shp**: die kartierten Lawinen (für Attribute siehe Beispielschlüssel!)
* **area_images_1999.shp**: Fläche die durch die Luftbilder abgedeckt wurde
* **clouds_1999.shp**: grobe Umrisse der Wolken in den Bildern
#
 *******************************************************************************
This dataset contains the **outlines of 11'120 avalanches** mapped from panchromatic aerial imagery taken between February 25, 1999 and March 1, 1999. The avalanche outlines have various attributes which are described in the **attached example key** (ExampleKey_AvalMapping_1999_e.pdf).
There are three shapefiles:
* **avalanches1999_endversion1.shp**: the mapped avalanches (for attributes see example key!)
**area_images_1999.shp**: Area covered by the aerial images
**clouds_1999.shp**: rough outlines of the clouds in the images

en:
**for English see below**
*******************************************************************************

 Datenbeschrieb

Dieser Datensatz enthält die **Umrisse der 11'120 Lawinen** die aus schwarzweiss Luftbildern, welche zwischen dem 25.2.1999 und dem 1.3.1999 aufgenommen wurden, kartiert wurden. Die Lawinenumrisse haben verschiedene Attribute welche im **beigelegten Beispielschlüssel** beschrieben sind (Beispielschluessel_1999_d.pdf).

Es gibt drei Shapefiles:
* **avalanches1999_endversion1.shp**: die kartierten Lawinen (für Attribute siehe Beispielschlüssel!)
* **area_images_1999.shp**: Fläche die durch die Luftbilder abgedeckt wurde
* **clouds_1999.shp**: grobe Umrisse der Wolken in den Bildern

 Bildverfügbarkeit:

Die entzerrten Luftbilder können von der [Swisstopo](https://s.geo.admin.ch/rpq3hufnb588) einzeln über den Downloadlink heruntergeladen werden (herzlichen Dank an Holger Heisig für die Prozessierung und ans BAFU für die Finanzierung der Prozessierung!!). Über "Erweiterte Werkzeuge"/ "Datei importieren" können die Bilder nach hereinziehen des Orthofotolinks direkt im map.geo.admin.ch angezeigt werden.

 Weiterführende Litertaur:
Details zu den Luftbildern und zur Kartierung, sowie eine kleine Analyse und Empfehlungen zur Verwendung der Daten finden sich unter

- **FAN Publikation** (Info folgt)

- Dal, F. J., Hafner, E. D., Peters, T., Narnhofer, D., Caye Daudt, R., Heisig, H., & Bühler, Y. (2024). Automated snow avalanche mapping with deep learning in aerial imagery from the extreme avalanche winter of 1999. In K. Gisnås, P. Gauer, H. Dahle, M. Eckerstorfer, A. Mannberg, & K. Müller (Eds.), Proceedings of the international Snow Science Workshop 2024 (pp. 1264-1271). Norwegian Geotechnical Institute.

- Hafner, E. D., Techel, F., Heisig, H., Dal, J. F., & Bühler, Y. (2024). Remotely sensed avalanche activity during three extreme avalanche periods in Switzerland. In K. Gisnås, P. Gauer, H. Dahle, M. Eckerstorfer, A. Mannberg, & K. Müller (Eds.), Proceedings of the international Snow Science Workshop 2024 (pp. 1222-1229). Norwegian Geotechnical Institute.

*******************************************************************************

 Data description

This dataset contains the **outlines of 11'120 avalanches** mapped from panchromatic aerial imagery taken between February 25, 1999 and March 1, 1999. The avalanche outlines have various attributes which are described in the **attached example key** (ExampleKey_AvalMapping_1999_e.pdf).

There are three shapefiles:
* **avalanches1999_endversion1.shp**: the mapped avalanches (for attributes see example key!)
**area_images_1999.shp**: Area covered by the aerial images
**clouds_1999.shp**: rough outlines of the clouds in the images

 Image availability:
The rectified aerial images can be downloaded individually from [Swisstopo](https://s.geo.admin.ch/bg6beetinfdc) via the download link (many thanks to Holger Heisig for processing and to BAFU for financing the processing!!). The images can be displayed directly in map.geo.admin.ch via “Advanced tools”/“Import file” after dragging in the orthophoto link.

 Further Reading:
Details on the aerial images and mapping, as well as a brief analysis and tips on using the data can be found at

- **FAN Publication** (info to follow)

- Dal, F. J., Hafner, E. D., Peters, T., Narnhofer, D., Caye Daudt, R., Heisig, H., & Bühler, Y. (2024). Automated snow avalanche mapping with deep learning in aerial imagery from the extreme avalanche winter of 1999. In K. Gisnås, P. Gauer, H. Dahle, M. Eckerstorfer, A. Mannberg, & K. Müller (Eds.), Proceedings of the international Snow Science Workshop 2024 (pp. 1264-1271). Norwegian Geotechnical Institute.

- Hafner, E. D., Techel, F., Heisig, H., Dal, J. F., & Bühler, Y. (2024). Remotely sensed avalanche activity during three extreme avalanche periods in Switzerland. In K. Gisnås, P. Gauer, H. Dahle, M. Eckerstorfer, A. Mannberg, & K. Müller (Eds.), Proceedings of the international Snow Science Workshop 2024 (pp. 1222-1229). Norwegian Geotechnical Institute.

aerial-imagery

display_name: aerial-imagery

avalanche

display_name: avalanche

avalanche-activity

display_name: avalanche-activity

avalanche-mapping

display_name: avalanche-mapping

remote-sensing

display_name: remote-sensing

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Avalanche outlines February and March 1999 from aerial imagery


maintainer: Brian W. McArdell

en: monitoring-station force-plate illgraben magnitude debris-flow

state: active

type: dataset

en: Illgraben debris-flow characteristics 2023

media_type: text/csv

format: CSV

media_type: text/plain

format: TXT

en:
List of key debris flow variables from the WSL Illgraben monitoring station (2023) such as occurrence date and time, peak flow depth, peak flow velocity, total volume and bulk density.
This table contains values based on our current analysis methods. The list will be updated annually after each debris flow season, and as our methods continue to improve, individual values may change slightly in the future.

debris-flow

display_name: debris-flow

force-plate

display_name: force-plate

illgraben

display_name: illgraben

magnitude

display_name: magnitude

monitoring-station

display_name: monitoring-station

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester


maintainer: EnviDat Support

en: decomposition carrion bacteria yellowstone wolf carcass soil-biodiversity biogeochemical-cycling detritus fungi

en:
Site	ID for different carcasses across the Yellowstone Landscape
Location	Sampling location, either under carcass or control plot
Species	Indicating whether carcass was from bison or elk
Gender	Gener of carcass; F = female, M = male, ? = unknown
Lat	Latitude
Long	Longitude
DSK	Days since kill; in days
Soil.N	Soil N concentration (%)
Soil.C	Soil C concentration (%)
Veg.C	Vegetation C concentration (%); dominant grasses sampled
Veg.N	Vegetation N concentration (%); dominant grasses sampled
Veg.CtoN	Vegetation C to N ratio; dominant grasses sampled
Soil.resp	Soil respiration (g m-2 h-1)
soil.temp	Soil temperature (°C)
Soil.moist	Soil moisture (volumentric; %)
CRR	Cotton rotting rate
bacteria.richness	Bacteria richness
bacteria.diversity	Bacteria diverstiy
fungi.richness	Fungi richness
fungi.diversity	Fungi diversity
bacteria.abundance	Bacteria abundance
fungi.abundance	Fungi abundance

format: XLS

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch, A.C., Frossard, A., Schütz, M., Frey, B., Morris, A.W., Bump, J.K. (accepted) Effects of elk and bison carcasses on soil microbial communities and ecosystem functions in Yellowstone, USA. (accepted). Functional Ecology
doi: ...

Methods
Study area and study sites
This study was conducted in YNP’s Northern Range (NR), located in north-western Wyoming and south-western Montana, USA (~44.9163° N, 110.4169° W). The NR expands over ~1000 km2 and features long cold winters and short dry summers. Grasslands and shrublands dominate the NR that is the home of large migratory herds of bison (winter counts 2017: ~3919 individuals; Geremia, Wallen, & White, 2017) and elk (~5349 individuals) as well as their main predators, approximately five packs of wolves with a total of 33 individuals (Smith et al., 2017). As part of a long-term research program within YNP, wolf predation has been studied since their reintroduction in 1995.
For our study, we received ground-truthed coordinates of bison and elk carcasses from winter 2016/17 (November 2016 through April 2017) from the YNP Wolf Project. Between June 20 and July 1, 2017, we visited 24 carcasses in total. At five sites, we could not sample as the carcasses were no longer found. In total we located remains (hairmats, rumen content, bones, teeth) of 19 adult male and female carcasses (7 bison, 12 elk; Supplementary Table 1). Live body weights of adult bison and elk are approximately 730 kg (male bison), 450 kg (female bison), 330 kg (male elk), and 235 kg (female elk, Meagher, 1973; Quimby & Johnson, 1951).
The kills and subsequent consumption happened between 34 and 173 days prior to our sampling (hereafter “days since kill”, DSK), for which we accounted in our statistics. Note that wolves and other scavengers consumed the soft tissue of the carcasses quickly, hence, there is close to no soft tissue left for decomposition as compared to an intact body left on the soil surface. The 19 carcass sites covered the extent of YNP’s NR, with both bison and elk carcasses showing similar distributions; elevation ranged from 1703 to 2884 m a.s.l. (Supplementary Fig 1 & Supplementary Table 1). The carcasses were all located in grassland or sage-brush shrubland, with or without sparsely scattered trees, and both bison and elk carcasses showed the same distribution of DSK. At each study site, we selected a reference plot (hereafter “control”) that was of comparable size, slope aspect and vegetation to the carcass location (hereafter “carcass”). The control was at least 10 m away (Danell, Berteaux, & Brathen, 2002; Melis et al., 2007) from the carcass itself to ensure the absence of potential direct and indirect carcass effects (paired design; (Bump, Webster, et al., 2009; Bump, Peterson, et al., 2009).

Ecosystem functions and soil properties
We randomly collected 50 g of mineral soil from three locations on both control and carcass plots to a depth of 5 cm with sterile techniques and gently mixed the material to obtain a composite sample. Half the soil sample was immediately bagged in plastic bags (whirl packs), stored in a cooler with ice packs (~5 ºC), sieved (2-mm) and frozen within 4-6 hours of collection to assess soil microbial communities. For this purpose, we extracted total genomic DNA from 0.5 g soil using the PowerSoil DNA Isolation Kit (Qiagen, Hilden, Germany). DNA concentrations were measured using PicoGreen (Molecular Probes, Eugene, OR, USA). PCR amplifications of partial bacterial small-subunit ribosomal RNA genes (region V3–V4 of 16S rRNA) and fungal ribosomal internal transcribed spacers (region ITS2) were performed as described previously (Frey et al., 2016). Each sample consisting of 40 ng DNA was amplified in triplicate and pooled before purification with Agencourt AMPure XP beads (Beckman Colter, Berea, CA, USA) and quantified with the Qubit 2.0 fluorometric system (Life Technologies, Paisley, UK). Amplicons were sent to the Genome Quebec Innovation Center (Montreal, Canada) for barcoding using the Fluidigm Access Array technology and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, CA, USA).
Quality control of bacterial and fungal reads was performed using a customized pipeline (Supplementary Table 2; Frey et al., 2016). Paired-ends reads were matched with USEARCH (Edgar & Flyvbjerg, 2015), substitution errors were corrected using Bayeshammer (Nikolenko, Korobeynikov, & Alekseyev, 2013) and PCR primers were trimmed (allowing for 1 mismatch, read length >300 bp for 16S and >200 bp for ITS primers) using Cutadapt (M. Martin, 2011). Sequences were dereplicated and singleton reads removed prior to clustering into operational taxonomic units (OTUs) at 97% identity using USEARCH (Edgar, 2013). The remaining centroid sequences were tested for the presence of ribosomal signatures using Metaxa2 (Bengtsson-Palme et al., 2015) or ITSx (Bengtsson-Palme et al., 2013). Taxonomic assignments of the OTUs were obtained using Bayesian classifier (Wang, Garrity, Tiedje, & Cole, 2007) with a minimum bootstrap support of 60% implemented in mothur (Schloss et al., 2009) by querying the bacterial and fungal reads against the SILVA Release 128 (Quast et al., 2013) and UNITE 8.0 (Abarenkov et al., 2010) reference databases for 16S and ITS OTUs, respectively.
Abundances of the bacterial 16S rRNA gene and fungal ITS amplicon were determined by quantitative real-time PCR (qPCR) on an ABI7500 Fast Real-Time PCR system (Applied Biosystems, Foster City, CA, USA) as described previously (Frossard et al., 2018). The same primers (without barcodes) and cycling conditions as for the sequencing approach were used for the 16S and ITS qPCR. Three standard curves per target region were obtained using tenfold serial dilutions of plasmids generated from cloned targets (Frey, Niklaus, Kremer, Lüscher, & Zimmermann, 2011). Data were converted to represent mean copy number of targets per gram of soil (dry weight).
The other half of the soil sample was bagged in paper, dried to constant weight at 60°C, passed through a 2 mm sieve and analyzed for total C and N concentration with a CE Instruments NC 2100 soil analyzer (CE Elantech Inc., Lakewood NJ, USA). We also collected 20 mature and undamaged leaves of the dominant grass species growing on control and carcass sites, but taxa were not recorded. The plant material was dried at 60°C, finely ground till homogenized and also analyzed to obtain total C and N concentrations. Soil temperature (10 cm depth) was measured with a waterproof digital thermometer (Barnstead International, Dubuque IA, USA) at three locations each at the control and carcass site. Soil moisture (0 – 10 cm depth) was measured with time domain reflectometry (Field-Scout TDR-100; Spectrum Technologies, Plainfield IL, USA) at five randomly chosen points on control and carcass sites. We measured soil respiration at five randomly chosen points at both control and carcass sites with a PP-Systems SRC-1 soil respiration chamber (closed circuit) attached to a PP-Systems EGM-4 infrared gas analyzer (PP-Systems, Amesbury, MA, USA). For each measurement the soil chamber (15 cm high; 10 cm diameter) was tightly placed on the soil surface, after clipping plants to avoid measuring plant respiration or photosynthesis. Measurements were conducted over 120 s.
In addition, we assessed the decomposition rates of standardized OM using the cotton strip assay (Latter & Howson, 1977; Latter & Walton, 1988). Cotton cloth tensile strength loss (CTSL) is a measure of decomposition, and an index to express the combined effect of soil microclimatic, physical, chemical and biological properties on decomposition while accounting for OM quality (Latter & Walton, 1988; Risch, Jurgensen, & Frank, 2007; Withington & Sanford Jr., 2007). We placed five 20 cm wide x 13 cm long sheets of 100% unbleached cotton cloth (American Type SM 1/18’’, Warp: 34/1, Weft: 20/1, Weave plain, 29.5 picks/cm warp, 22 picks/cm weft, 237 g/m2; Daniel Jenny & Co., Switzerland;) at each carcass and control site vertically into the soil by making slits with a flat spade to a depth of 12 cm. We inserted each cloth with the spade, and then pushed the slit closed to assure tight contact with the soil. The cloths were retrieved after 18 to 27 days. After retrieval, the cloths were air-dried, remaining soil gently removed by hand, and 1.5 cm wide strips were cut at the 3.5-5.0 cm (top) and the 9-10.5 cm (bottom) soil depth. The strips were equilibrated at 50 % relative humidity and 20°C for 48 hours (climate chamber) prior to strength testing (Scanpro Awetron TH-1 tensile strength tester; AB Lorentzen and Wettre, Kista, Sweden). Cotton rotting rate (CRR) = (CTScontrol - CTSfinal/CTSfinal)1/3 * (365/t), where CTScontrol is the cotton tensile strength of a control cloth and CTSfinal the cotton tensile strength of the incubated sample, t is the incubation period in days. Control cloths were inserted into the ground and immediately retrieved to account for tensile strength loss associated with cloth insertion. We averaged the CRR of top and bottom strips for further analyses as no difference was found between the two. All sampling and cloth insertion took place between June 20 and July 1, 2017, cloths were retrieved between July 17 and 20, 2017. Soil respiration, average CRR, vegetation N concentration and vegetation C:N ratio are defined as ecosystem functions, soil C and N concentration, soil temperature and moisture as soil abiotic properties, and bacterial and fungal richness (number of taxa), diversity (Shannon) and abundance as soil biotic properties.

Statistical analyses
Univariate analyses for ecosystem functions, soil biotic and abiotic properties
We tested whether individual ecosystem functions, soil biotic and abiotic properties differed between carcass and control (“Location”), bison and elk (“Species”) and days since kill (“DSK”). For this purpose, we used linear mixed effect models (LMM, “nlme” package v 3.1 – 131.1 in R v 3.4.4; Pinheiro, Bates, DebRoy, & Sarkar, 2018; R Core Team, 2019) with Location, Species, Location x Species and DSK as fixed effects. Site was included as random effect to account for the paired design. We developed a separate model for all dependent variables. All but bacterial richness, fungal richness, fungal diversity and vegetation N concentration were natural-log transformed to meet model assumptions. For each LMM, we calculated contrasts to assess the specific comparisons we were interested in with the “lsmeans” package v 2.27-62 (Lenth & Love, 2018): 1) carcass vs control, 2) carcass bison vs control bison, and 3) carcass elk vs control elk. We also tested whether we had differences between bison and elk carcasses or the sites where bison and elk were killed and included contrasts 4) carcass bison vs carcass elk and 5) control bison vs control elk.
We calculated the log response ratio (LRR = ln[carcass/control]) to obtain carcass effects for all variables for both species separately. LRR < 0 indicates higher value at control compared to carcass, LRR > 0 indicates higher values at carcass compared control. We used LRRs for visualization and to assess spatial patterns in carcass effects across YNP. For this purpose we calculated the Moran’s I statistic for each ecosystem function, soil biotic and abiotic property based on a latitude-longitude matrix with the “moran.test” function in the “spdep” package version 1.1-3 (Bivand et al., 2019).
Multivariate analyses
Rare OTUs, defined as OTUs with a low abundance of reads, were retained in multivariate methods because they only marginally influence these analyses (Gobet, Quince, & Ramette, 2010). Bray–Curtis dissimilarity matrices were generated based on square-root-transformed matrices. We used Principal Coordinate Analyses (PCoA) to assess how soil bacterial and fungal communities differed between control and carcass of bison and elk (“vegan” package v 2.5-4, Oksanen et al., 2019). We then extracted PCoA axes scores 1 and 2 and used LMM (“nlme” package) with Location, Species, Location x Species and DSK as fixed effects. Site was, again, included as random effect. We again calculated the contrasts as described above using the “lsmeans” package. We also assessed how ecosystem functions, and soil abiotic and biotic properties were related to the soil bacteria and fungi community structure associated with bison and elk control and carcasses using the “envfit” function in the “vegan” package (Oksanen et al., 2019).
Indicator species analyses were performed using the multipatt function implemented in the “indicspecies” package version 1.7.6 with 100000 permutations (De Caceres & Jansen, 2016). This step allowed to identify OTUs that led to changes in multivariate patterns between control and carcass of both bison and elk separately (De Cáceres, Legendre, & Moretti, 2010). The multipatt function uses a point biserial correlation coefficient statistical test. Indicator OTUs were defined as bacterial and fungal OTUs with more than 50 sequences, i.e., removing rare taxa and taxa with low abundances containing little indicator information (Rime et al., 2015) and that were significantly correlated with Location (p < 0.05, correlation coefficient > 0.3). A heatmap of these OTUs were generated with the vegan and ggplot2 packages. The indicator analyses were performed in R version 3.3.3 (R Core Team, 2017).

References
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Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., … Wagner, H. H. (2019). vegan: community ecology package. R package version 2.5-4.
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Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., … Glöckner, F. O. (2013). The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research, 41(Database issue), D590–D596. doi:10.1093/nar/gks1219
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R Core Team. (2019). R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
Rime, T., Hartmann, M., Brunner, I., Widmer, F., Zeyer, J., & Frey, B. (2015). Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield. Molecular Ecology, 24(5), 1091–1108. doi:10.1111/mec.13051
Risch, A. C., Jurgensen, M. F., & Frank, D. A. (2007). Effects of grazing and soil micro-climate on decomposition rates in a spatio-temporally heterogeneous grassland. Plant and Soil, 298(1–2), 191–201. doi:10.1007/s11104-007-9354-x
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., … Weber, C. F. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology, 75(23), 7537–7541. doi:10.1128/AEM.01541-09
Smith, D., Stahler, D., Cassidy, K., Stahler, E., Metz, M., Cassidy, B., … Cato, E. (2018). Yellowstone National Park wolf project annual report 2017. Yellowstone National Park, Mammoth, WY, USA: National Park Service, Yellowstone Center of Resources.
Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73(16), 5261–5267. doi:10.1128/AEM.00062-07
Withington, C., & Sanford Jr., R. (2007). Decomposition rates of buried substances increase with altitude in a forest-alpine tundra ecotone. Soil Biology and Biochemistry, (39), 68–75.

Please cite this paper together with the citation for the datafile.

bacteria

display_name: bacteria

biogeochemical-cycling

display_name: biogeochemical-cycling

carcass

display_name: carcass

carrion

display_name: carrion

decomposition

display_name: decomposition

detritus

display_name: detritus

fungi

display_name: fungi

soil-biodiversity

display_name: soil-biodiversity

wolf

display_name: wolf

yellowstone

display_name: yellowstone

en: Elk and bison carcasses in Yellowstone, USA


en: microstructure compression-experiments snow-mechanics snow x-ray-tomography

en: README

en: README file explaining the organization of the data

en: Snowmicroquakes Data

en: Compression experiments, X-ray images and simulation data with supplemented README file

format: SERVICE

en:
When snow is compressed with a certain speed, micro-snowquakes are triggered in the porous structure of bonded crystals. The present dataset covers uniaxial compression experiments of snow at different strain rates and concurrent X-ray tomography imaging documenting this feature.

The experiments were conducted in a micro-compression stage operated in the X-ray tomography scanner in the SLF cold laboratory. The dataset comprises the compression force data of 17 compression experiments, the 3D image data from 4 X-ray tomography scans and the results of numerical simulations.

compression-experiments

display_name: compression-experiments

microstructure

display_name: microstructure

snow

display_name: snow

snow-mechanics

display_name: snow-mechanics

x-ray-tomography

display_name: x-ray-tomography

en: Compressive stick slip and snow-micro-quakes


en: wind-speed precipitation climate-change temperature par meteorology long-term meteo swiss-forest-lab relative-humidity

en: Data plot of the forest station (VOB)

media_type: application/pdf

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

format: PDF

mimetype: application/pdf

en: Data plot of the field station (VOF)

en: Forest station data (VOB)

en: Data file.

mimetype: text/csv

en: Site photo of the field station (VOF)

en: Site photo of the field stationfrom the side.

mimetype: image/jpeg

en: Site photo of the forest station (VOB)

en: Site photo of the forest station from the side.

en: Field station data (VOF)

en: Site aerial photo (Vordemwald)

en: Site aerial photo from both Vordemwald stations. Source: Google. 2016. Site aerial photo from both Vordemwald stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Vordemwald in Switzerland where one station is located within a natural mixed forest stand (VOB) with European silver fir (_Abies alba_; 110 yrs) and oak trees (_Quercus sp._; 190-210 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, VOF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Vordemwald is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Vordemwald, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1996 onwards


en: precipitation relative-humidity temperature growing-season-length growing-degree-days solar-radiation soil-water-balance

en: CHELSA-BIOCLIM+ Technical Documentation

en: Technical documentation document including the variable names, units, scaling, offset, and background.

en: CHELSA-BIOCLIM+

en: Global extented set of bioclimatic variables at different temporal (e.g. monthly, annual, long term normals) resolution in Geotiff format.

format: GeoTIFF

en: A multitude of physical and biological processes on which ecosystems and human societies depend are governed by climatic conditions. Understanding how these processes are altered by climate change is central to mitigation efforts. Based on mechanistically downscaled climate data, we developed a set of climate-related variables at yet unprecedented spatiotemporal detail as a basis for environmental and ecological analyses. We created gridded data for near-surface relative humidity (hurs), cloud area fraction (clt), near-surface wind speed (sfcWind), vapour pressure deficit (vpd), surface downwelling shortwave radiation (rsds), potential evapotranspiration (pet), climate moisture index (cmi), and site water balance (swb), at a monthly temporal and 30 arcsec spatial resolution globally starting 1980 until 2018. At the same spatial resolution, we further estimated climatological normals of frost change frequency (fcf), snow cover days (scd), potential net primary productivity (npp), growing degree days (gdd), and growing season characteristics for the periods 1981-2010, 2011-2040, 2041-2070, and 2071-2100, considering three shared socioeconomic pathways (SSP126, SSP370, SSP585) and five Earth system models. Time-series variables showed high accuracy when validated against observations from meteorological stations. Climatological normals were also highly correlated to observations although some variables showed notable biases, e.g., snow cover days (scd). Together, the data sets presented here allow improving our understanding of patterns and processes that are governed by climate, including the impact of recent and future climate changes on the world’s ecosystems and associated services to societies.

growing-degree-days

display_name: growing-degree-days

growing-season-length

display_name: growing-season-length

soil-water-balance

display_name: soil-water-balance

solar-radiation

display_name: solar-radiation

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: CHELSA-BIOCLIM+ A novel set of global climate-related predictors at kilometre-resolution


maintainer: Daniel Scherrer

en: forest-model species-interaction spatial-modelling gui forest land-use species-migration treemig r-package forest-dynamics bioclimatic-variables

en: TreeMig Tutorial

en: Tutorial for using the TreeMig framework; updated

en: TreeMig Simulation Environment and Input Data

media_type: application/zip

en:
The zip file consists of a R-script to provide the framework, an example simulation environment and a set of input data.
- The R-script installAndRunTreeMigWrapperAndGUI.R installs the R-package, links to the input data and starts the graphical user interface.
- The gridded input datasets in TMInputData are specifically tailored to Switzerland and have the same coordinate reference system and a congruent 200m spatial resolution. They consist of climate, topographic, land use and soil data. For details see TMInputDataDetails.pdf.
- TMEnvironment is an example simulation environment, i.e. a set of hierarchically structured folders. For the first example simulation of the tutorial it contains the
  - the TreeMig executables for MacOS, Linux and Windows
  - simulation control files that define the setup and input files of the simulation (in folder C)
  - species parameters (in folder P)
  - bioclimatic data (in folder E)
  - folder R for results
  - folder Plots for plots of the simulation results.
  - This environment can be also used for the subsequent simulations of the tutorial.
- Some additional R-scripts demonstrate more complex applications described in the tutorial, e.g. coupling to another model.

format: ZIP

en: Description input data

en: Details where the input data come from and how they have been processed

en:
Starter kit for the TreeMig framework that allows for an easy application of the forest landscape model TreeMig for simulating forest dynamics in space under changing environmental and land use conditions.
The starter kit consists of a set of climate, land-use, topography and soil property input data for Switzerland, a script for installing the framework and running the GUI of the framework with the link to the input data, a tutorial covering a range of simulation examples for Switzerland and a transect through Europe, and an associated example simulation environment containing the model executables and other model inputs.

bioclimatic-variables

display_name: bioclimatic-variables

forest

display_name: forest

forest-dynamics

display_name: forest-dynamics

forest-model

display_name: forest-model

gui

display_name: gui

land-use

display_name: land-use

r-package

display_name: r-package

spatial-modelling

display_name: spatial-modelling

species-interaction

display_name: species-interaction

species-migration

display_name: species-migration

treemig

display_name: treemig

en: Starter Kit for the TreeMig framework v1 for easy simulation of spatio-temporal forest dynamics


en: pmcamx-uf total-number modeling nucleation cloud-droplets

en: data_JRL_New particle formation events can reduce cloud droplets in boundary layer clouds at the continental scale.Paper_2023GL106182.zip

en: This repository contains PMCMx-UF model outputs used for the paper: D. Patoulias K. Florou S. N. Pandis and A. Nenes: New particle formation events can reduce cloud droplets in boundary layer clouds at the continental scale, Geophysical Research Letters, in review, 2023.

cloud-droplets

display_name: cloud-droplets

modeling

display_name: modeling

nucleation

display_name: nucleation

pmcamx-uf

display_name: pmcamx-uf

total-number

display_name: total-number

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Dataset for the publication New particle formation events can reduce cloud droplets in boundary layer clouds at the continental scale


en: turbulence eddy-covariance-measurements drifting-snow mass-flux large-eddy-simulations micro-rain-radar blowing-snow meteorological-data antarctica

en: Simulation data for a situation with negligible snow transport

en: Results from two LES-LSM simulations called NoDrift_1 and NoDrift_2, which reproduce the conditions observed at the S17 site on 12th January 2019, 05:40 to 05:50 UTC.

en: Measurement data from Micro Rain Radar (MRR)

en: Remote sensing data of blowing snow from a Micro Rain Radar (MRR).

en: Measurement data from micro-meteorological station

en: Automatic in-situ measurements of micro-meteorology and snow transport

en: Simulation data for a situation with significant snow transport

en: Data from two LES-LSM simulations called Drift_1 and Drift_2, which reproduce the conditions observed at the S17 site on 11th January 2019, 00:40 to 00:50 UTC.

en: Measurement data from snow particle counter at MRR site

en: Near-surface observations of drifting snow from a Snow Particle Counter (SPC) installed at the location of the Micro Rain Radar.

en: Source code of the large-eddy simulations coupled with a Lagrangian stochastic model (LES-LSM), available on GitLab.

en: Readme

en: Meta data

en:
This dataset contains measurement and simulation data. The measurements characterize the standard meteorology, turbulence, and snow transport at the S17 site near Syowa Station in East Antarctica during an expedition in austral summer 2018/2019. Large-eddy simulations with sublimating particles provide additional insight into the latent and sensible heat exchange between snow and air in two example situations observed at the S17 site.

A part of the measurement data was recorded by an automatic measurement station from 10th January 2019 to 26th January 2019. This measurement station was equipped with standard meteorological sensors, a three-dimensional ultrasonic anemometer, an open-path infrared gas analyzer, a snow particle counter, an infrared radiometer for measurements of the surface temperature, and a sonic ranging sensor measuring changes in snow surface elevation.

At a horizontal distance of approximately 500 m, a Micro Rain Radar (MRR) was installed in a tilted configuration with an elevation angle of 7° for remote sensing of blowing snow between 25th December 2018 and 24th January 2019. In addition, near-surface in-situ measurements of snow transport were performed at the location of the MRR by deploying a snow particle counter from 27th December 2018 to 24th January 2019.

The simulations cover a 18 x 18 x 6 m³ domain and reproduce the steady-state conditions during a 10-min interval with significant snow transport and another 10-min interval with negligible snow transport. We provide the model source code and the post-processed simulation data, i.e., horizontally averaged quantities as a function of height and time.

antarctica

display_name: antarctica

blowing-snow

display_name: blowing-snow

drifting-snow

display_name: drifting-snow

eddy-covariance-measurements

display_name: eddy-covariance-measurements

large-eddy-simulations

display_name: large-eddy-simulations

mass-flux

display_name: mass-flux

meteorological-data

display_name: meteorological-data

micro-rain-radar

display_name: micro-rain-radar

turbulence

display_name: turbulence

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Meteorology and snow transport at S17 near Syowa, Antarctica, in austral summer 2018/2019


weissfluhjoch-dataset-for-esm-snowmip

maintainer: Nander Wever

title_for_slug: weissfluhjoch-dataset-for-esm-snowmip

en: snow-depth esm-snowmip snow weissfluhjoch snow-models

en: Conversion script

en:
Use this script to convert WFJ_optimaldataset_v6.smet to wfj.smet, the file that is used for the ESM-SnowMIP project. It also requires the file: WFJ_AirPressure_Data.zip

Use: bash create_wfj_dataset.sh > input/wfj.smet

mimetype: text/x-sh

mimetype: application/zip

en: Dataset Weissfluhjoch for ESM-SnowMIP

en: ini file

en: This ini file is required by data-converter from MeteoIO version 1887 (http://models.slf.ch/p/meteoio/)

en: This Weissfluhjoch dataset is a processed version of the Weissfluhjoch dataset version 6 from https://doi.org/10.16904/6. This dataset was specially created for the ESM-SnowMIP project. Here it is documented how this dataset has been created.

esm-snowmip

display_name: esm-snowmip

snow

display_name: snow

snow-depth

display_name: snow-depth

snow-models

display_name: snow-models

weissfluhjoch

display_name: weissfluhjoch

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Weissfluhjoch dataset for ESM-SnowMIP


maintainer: Daniela Brito Melo

en: saltation snow-cohesion mixed-grain-transport large-eddy-simulations drifting-snow

en: LES-LSM code

en: Source code used to perform the analysis presented at the research article "Modeling snow saltation: the effect of grain size and interparticle cohesion". The source code is also available at the WSL/SLF GitLab Repository (https://gitlabext.wsl.ch/atmospheric-models/les-lsm).

en: Data in Figures

en: Simulation results presented in Figures 1 to 11 of the research article "Modeling snow saltattion: the effect of grain size and interparticle cohesion" in csv format.

en:
This dataset includes the parallel application and the main results supporting the research article "Modeling snow saltation: the effect of grain size and interparticle cohesion" published at the Journal of Geophysical Research: Atmospheres.
The code is a flow solver based on the Large Eddy Simulation (LES) technique coupled with a Lagrangian Stochastic Model (LSM). The interaction of snow particles with the bed is modeled with statistical and physically-based models for aerodynamic entrainment, rebound and splash, following the works of Groot Zwaaftink et al. (2014), Comola and Lehning (2017) and Sharma et al. (2018). This algorithm was also used by Sigmund et al. (2021) to model snow sublimation.

mixed-grain-transport

display_name: mixed-grain-transport

saltation

display_name: saltation

snow-cohesion

display_name: snow-cohesion


maintainer: Virginie Marques

en: fjord plankton fish biodiversity dna-metabarcoding marine environmental-dna

en: Metabarcoding data

en: Raw metabarcoding data for both primers (teleo and 18S) and corresponding file to perform the demultiplexing and primer trimming

en: Code, data and figures

en: Here there are all the data and code to reproduce the figures and analysis presented in the paper, with a README.md file

en:
This dataset contains the raw environmental DNA data associated with the publication *Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord* in the journal Polar Biology (2023).

 Methods

**Sampling**
We sampled the Lilliehöök fjord on the west coast of Spitsbergen (Svalbard, Norway) over 3 days from 3 to 5 of August 2021. Samples were taken from the glacier front up to the fjord mouth of the Krossfjorden system, around 30 km long, after the Lilliehöök fjord merged with the mouth of Möller fjord. The fjord’s maximum depth has been recorded at 373 m (Svendsen et al. 2002) and has no sill at its entrance, thereby facilitating water exchange with the open ocean of the West Spitsbergen Current. We used a research vessel to sample 5 sites for a total of 15 samples, sampling 3 depths per site (3-m, chlorophyll a maximum and 85-m, unless sea floor was shallower). Shallow and intermediate samples between 3-m and 12-m represent ~35-L of water filtered in-situ using long tubing and a peristaltic pump, and all other deeper samples were taken from a total of 3 Niskin bottles (General Oceanics), representing 22-L of water sampled per sample. Water was filtered through a VigiDNA filtration capsule (SPYGEN) with a 0.20-µm pore size using an Athena peristaltic pump (Proactive Environmental Products, Bradenton, Florida) with a flow rate of ~1-L/min. Each sample was handled with single use tubing and gloves.

**Molecular**
To perform the amplification, we used two sets of primers: teleo (forward: ACACCGCCCGTCACTCT, reverse: CTTCCGGTACACTTACCATG; Valentini et al. 2016) and the universal eukaryotic 1389F/1510R primer pair, amplifying the V9-18S rDNA gene (Amaral-Zettler et al. 2009) (forward: TTGTACACACCGCCC, reverse: CCTTCYGCAGGTTCACCTAC).

 Data content:

+ Metabarcoding data: This zip file contains the 2 sequencing libraries filtered to only retain the samples used in the present study.
+ Code, data and figure: This zip file contains all data and code to reproduce the figures and the analysis in the study, with an associated README explaining the content of each folder.

 Additional informations
For more details, please see the Methods in the associated publication: DOI: 10.1007/s00300-023-03187-9.

biodiversity

display_name: biodiversity

dna-metabarcoding

display_name: dna-metabarcoding

environmental-dna

display_name: environmental-dna

fish

display_name: fish

fjord

display_name: fjord

marine

display_name: marine

plankton

display_name: plankton

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data: Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord


maintainer: Frank Techel

en: avalanches shapefile observations snow alps

en: Selected wet snow avalanche activity data Davos, Switzerland (2011-2014)

en: Zip archive with shapefiles for the selected wet snow avalanche polygons, including metadata.

en:
Polygons of wet snow avalanches in the Davos area, as documented by the Swiss avalanche warning service. The georeferenced outlines of the avalanches contain both the release as well as the deposit area, but without separating between both.

The dataset is a subset of the total record of 1615 avalanches classified as wet snow avalanches from October 2011 - September 2014, containing those 255 avalanches exceeding 0.0125 km^2. Every polygon comes with meta data, including the date of occurrence.

This dataset is the underlying dataset to:
Wever, N., Vera Valero, C. and Techel, F. (2018) _Coupled snow cover and avalanche dynamics simulations to evaluate wet snow avalanche activity_. Submitted to J. Geophys. Res., in review.

alps

display_name: alps

avalanches

display_name: avalanches

observations

display_name: observations

shapefile

display_name: shapefile

educ

en: Education, culture and sport


maintainer: Stephan Zimmermann

en: sustainability soil nutrient mass-balance beech

en: With this study, our aim was to estimate the nutrient fluxes relevant for assessing nutrient sustainability as accurately as possible and to calculate nutrient balances for alternative forest management scenarios. Furthermore, we tested whether mapping units from existing geologic maps can serve as a basis for forest practitioners to estimate nutrient sustainability or whether more detailed data is needed. Positive fluxes include deposition and weathering, while negative fluxes include losses due to leaching and nutrient removal through timber harvesting in the balance. Weathering and leachate losses were modeled with a geochemical model. The SwissStandSim model was used to simulate the biomass growth under different harvesting and silvicultural strategies, allowing sustainability to be assessed for each nutrient at a given intensity of use. This assessment was made per rotation period of 100 years based on two criteria: i) nutrient supply; and ii) total stocking volume.

beech

display_name: beech

mass-balance

display_name: mass-balance

nutrient

display_name: nutrient

soil

display_name: soil

sustainability

display_name: sustainability

envidat

en: EnviDat: the Environmental Data Portal

en: Nutrient sustainability in beech forests


en: pinus-cembra molecular-markers afforestation genetic-structure reproductive-matieral

en: metadata and description of dataset

en: The dataset contains individual genotypes at 11 nuclear microsatellite markers of samples of Swiss stone pine (*Pinus cembra*). Samples were collected in 12 natural and presumably planted stands in the canton of Fribourg (Switzerland). The dataset is complemented by individual genotypes (same markers) from samples of a subset of 40 populations across the European Alps (taken from Gugerli et al., Journal of Biogeography 2023; https://doi.org/10.1111/jbi.14586; dataset archived at Dryad, https://doi.org/10.5061/dryad.866t1g1v6).

afforestation

display_name: afforestation

genetic-structure

display_name: genetic-structure

molecular-markers

display_name: molecular-markers

pinus-cembra

display_name: pinus-cembra

reproductive-matieral

display_name: reproductive-matieral

en: Nuclear microsatellite genotypes of Pinus cembra


maintainer: Thorsten Bartels-Rausch

en: heterogeneous arctic alpine snow interface chemistry solution laboratory-study antarctica metamorphism ozone reaction brine

en: Readme file

en: This file shows data, code, and plots.

en: Acetone data

en:
intensity of the acetone-water-cluster and water-cluster (as derived by a chemical ionisation mass spectrometer) with time in the carrier gas downstream of packed bed flow tube holding the snow sample or the by-pass, respectively. Time "0" denotes the time when the mass spectrometer data acquisition was started. When the carrier
gas with acetone was passed via the packed bed flow tube, that is switched from by-pass to pass the snow, acetone concentration in the carrier gas rapidly dropped due to surface adsorption and slowly recovered as the adsorption sites saturate. From this, the surface area can be obtained.

en: Ozone data

en: Trend of ozone mixing ratio ( _O3mixingRatio_ppb_ with time ( _time_s_ ) as measured downstream of the snow sample during the experiments. Time "0" denotes the time when data acquisition with ozone analyser was started. And, ozone (_nOzone_molec_per_s_ ) loss for each experiment with duration of ozone exposure ( _duration_s_ ) of ozone exposure, as derived from the ozone trends shown above. Time "0" denotes the time when the carrier gas with ozone was passed via the snow sample.

en: Data Figure 1

en: Data of published Figure

en: data list

en: Lists file names, snow sample properties, and flow settings for each data-set.

en: Matlab Script to view and plot data

en: Matlab Data

en: All data as Matlab mat file

en: Earth’s snow cover is very dynamic on diurnal time scales. The changes to the snow structure during this metamorphism have wide ranging impacts such as on avalanche formation and on the capacity of surface snow to exchange trace gases with the atmosphere. Here, we investigate the influence of dry metamorphism, which involves fluxes of water vapor, on the chemical reactivity of bromide in the snow. For this, the heterogeneous reactive loss of ozone at a concentration of 5-6E12 molecules cm-3 is investigated in artificial, shock-frozen snow samples doped with 6.2 uM sodium bromide and with varying metamorphism history. The oxidation of bromide in snow is one reaction initiating polar bromine releases and ozone depletions.

alpine

display_name: alpine

antarctica

display_name: antarctica

arctic

display_name: arctic

brine

display_name: brine

chemistry

display_name: chemistry

heterogeneous

display_name: heterogeneous

interface

display_name: interface

laboratory-study

display_name: laboratory-study

metamorphism

display_name: metamorphism

ozone

display_name: ozone

reaction

display_name: reaction

snow

display_name: snow

solution

display_name: solution

en: Data set on bromide oxidation by ozone in snow during metamorphism from laboratory study


en: european-summer-drought fagus-sylvatica growth-reaction-to-drought-stress forests leaf-senescence drought-2018

en: Drought and Beech: 1000 beeches data set

en: The data set comprises data from the Drought and Beech 1000 beeches project. The actual data file with monitoring data of 963 beech trees in northern Switzerland over four years (Drought_and_Beech_1000beeches_Data_v1.0.csv), a metadata file with column descriptions (Drought_and_Beech_1000beeches_Legend_v1.0.csv), and a file defining the different survey periods (Drought_and_Beech_1000beeches_Survey_periods_v1.0.csv).

en: This study investigated multi-year drought impacts on beech forests through a unique large-scale monitoring of 963 individual beech trees, which showed either premature leaf discoloration during the drought in summer 2018 or no visible damage. We conducted the study in two highly drought-affected regions in northern Switzerland and one less drought-affected region located further south. We quantified the development of crown dieback and tree mortality as well as secondary drought damage, i.e. the presence of bleeding cankers and bark beetle infestations, in these trees for three consecutive years. We also determined the impact of several potential climate- and stand-related (predisposing) factors on mortality and drought legacy processes.

european-summer-drought

display_name: european-summer-drought

fagus-sylvatica

display_name: fagus-sylvatica

forests

display_name: forests

growth-reaction-to-drought-stress

display_name: growth-reaction-to-drought-stress

leaf-senescence

display_name: leaf-senescence

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data on multi-year drought impacts on European beech in northern Switzerland


en: birds urban-biodiversity biodiversity urban periurban insect-herbivores pest-invasion biodiversity-experiment urban-ecology

en:
We established our study sites in the cities of Basel, Lugano and Zurich, and their peri-urban forests. We characterised urban tree cover of each city using a rectangular grid with squares of 100x100 m. Within each square, we measured the area covered by urban trees using the European Union's Copernicus Land Monitoring Service information, Urban Atlas Street Tree Layer 2018 [https://doi.org/10.2909/205691b3-7ae9-41dd-abf1-1fbf60d72c8c](https://doi.org/10.2909/205691b3-7ae9-41dd-abf1-1fbf60d72c8c).
Then we assigned each square to four categories of urban tree cover that roughly represented the main types of urban uses:
1) low cover, industrial/commercial areas, 0-20% tree cover;
2) intermediate cover, residential areas, 20-40% tree cover;
3) high cover, urban parks and cemeteries, 40-60% tree cover;
4) peri-urban forests (natural/semi-natural forests), 60-100% tree cover.

Our study sites consisted of eight 1.2 km-long transects in each city, equally distributed across the four tree cover categories. We designed an experimental measurements of bird predation rate on herbivore insect larvae using artificial caterpillars. They mimicked a variety of common, cryptically-coloured herbivorous species, which are usually preyed by birds. We designed caterpillars with green water-resistant modelling clay (Staedtler Noris®), 4-6 cm long and approximately 0.5 cm wide. Caterpillars were threaded to a thin (Ø = 0.6 mm) zinc-plated iron wire and tethered to branches of trees or bushes at a height up to 2 m from the ground. We placed 2-4 caterpillar mimics every 200 m along each transect (five points per transect) or, when not possible due to absence of suitable branches, within 200 m from the point.
In total, we placed 270 caterpillar mimics at 115 points during the late breeding season (June-July 2023). Caterpillar mimics were checked after 10-14 days and replaced with new ones at new locations within 10 m from the previous ones. During each of the two visits, we counted the number of bird predation marks.

biodiversity

display_name: biodiversity

biodiversity-experiment

display_name: biodiversity-experiment

birds

display_name: birds

insect-herbivores

display_name: insect-herbivores

periurban

display_name: periurban

pest-invasion

display_name: pest-invasion

urban

display_name: urban

urban-biodiversity

display_name: urban-biodiversity

urban-ecology

display_name: urban-ecology

en: Urban bird predation on artificial caterpillars


maintainer: Merin Reji Chacko

en: spatial-ecology biodiversity-assessment biomonitoring environmental-dna dna-metabarcoding

en: Analysis and Figures

en: This zipped file includes R scripts and the datasets required to run the analyses. A README describes the columns in each dataset.

en: Genomic data

en: Fastq files, primer descriptions and the final output dataset.

en: Field Metadata

en: Information concerning the locations and times of sampling, as well as the identity of the samplers and relevant comments.

en: This dataset contains the results of a five-day field excursion which the extent to which eDNA sampling can capture the diversity of a region with highly heterogeneous habitat patches across a wide elevation gradient through multiple hydrological catchments of the Swiss Alps. Using peristaltic pumps, we filtered 60 L of water at five sites per catchment for a total volume of 1 800 L. Using an eDNA metabarcoding approach focusing on vertebrates and plants, we detected 86 vertebrate taxa spanning 41 families and 263 plant taxa spanning 79 families across ten catchments. This dataset includes two sets of data. The first (Genomic data) includes all the necessary data for the bioinformatic pipeline, whereas the second (Analysis Figures) contains tidied data and scripts for the reproduction of all figures/analyses in the article describing this study.

biodiversity-assessment

display_name: biodiversity-assessment

biomonitoring

display_name: biomonitoring

dna-metabarcoding

display_name: dna-metabarcoding

environmental-dna

display_name: environmental-dna

spatial-ecology

display_name: spatial-ecology

en: Vertebrate and plant taxa recovered from 10 catchments in Vaud using an eDNA-metabarcoding approach


en: low-flow soil-moisture prevah drought-2018 hydrological-simulations precipitation discharge

en: Precipitation

en: Simulated precipitation for the 307 medium-sized catchments. The first column provides the date in the format YYYYMMDD. One column corresponds to one catchment. Unit: mm/d.

mimetype: text/plain

en: Low-flow storage

en: Simulated low-flow storage for the 307 medium-sized catchments. The first column provides the date in the format YYYYMMDD. One column corresponds to one catchment. Unit: mm.

en: Discharge

en: Simulated discharge for the 307 medium-sized catchments. The first column provides the date in the format YYYYMMDD. One column corresponds to one catchment. Unit: mm/d.

en: Shapefile of 307 catchments in Switzerland

en: Shapefile of 307 catchments for which simulations of precipitation, discharge, soil moisture, and low flow are provided. The OBJECTID entry corresponds to the data columns in the textfiles of the simulated data provided.

en: Soil moisture

en: Simulated plant-available soil moisture for the 307 medium-sized catchments. The first column provides the date in the format YYYYMMDD. One column corresponds to one catchment. Unit: mm.

en: The dataset provides simulated 1) precipitation, 2) discharge, 3) soil moisture, and 4) low-flow simulations for 307 medium-sized catchments in Switzerland for the period 1981-2018. The data were simulated using the hydrological model PREVAH in its gridded-version. The simulated time series are provided at daily resolution. A detailed description of the modeling approach can be found in Brunner et al. 2019 submitted to NHESS.

discharge

display_name: discharge

hydrological-simulations

display_name: hydrological-simulations

low-flow

display_name: low-flow

precipitation

display_name: precipitation

prevah

display_name: prevah

soil-moisture

display_name: soil-moisture

en: Hydro-meteorological simulations for the period 1981-2018 for Switzerland


en: fraxinus defense-chemistry intraspecific-variation ash-dieback invasive-species cross-resistance emerald-ash-borer

en: Raw data-Publication cross-resistance in ash-New Phytologist

en:
What are the research data files about: Raw data on perfomance (dry weight, development and mortality) of emerald ash borer larvae used in published bioassays. Raw data on ash dieback leasion lenghts. Raw data on untargeted and targeted specialized ash metabolites.
Which methods were used: Bioassays in greenhouses and climate chambers to collect data on emerald ash borer and ash dieback perfomance. Phytochemical analyses on ash phloem for quantifiying specialized metabolites
When and where was the data created / extracted: Summer 2020-2021

en:
 What are the research data files about: Raw data on perfomance (dry weight, development and mortality) of emerald ash borer larvae used in published bioassays. Raw data on ash dieback leasion lenghts. Raw data on untargeted and targeted specialized ash metabolites.

Which methods were used: Bioassays in greenhouses and climate chambers to collect data on emerald ash borer and ash dieback perfomance. Phytochemical analyses on ash phloem for quantifiying specialized metabolites.

When and where was the data created / extracted: Summer 2020-2021

ash-dieback

display_name: ash-dieback

cross-resistance

display_name: cross-resistance

defense-chemistry

display_name: defense-chemistry

emerald-ash-borer

display_name: emerald-ash-borer

fraxinus

display_name: fraxinus

intraspecific-variation

display_name: intraspecific-variation

invasive-species

display_name: invasive-species

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Raw data-Publication cross-resistance in ash - New Phytologist


automatic-detection-of-avalanches

maintainer: Matthias Heck

title_for_slug: automatic-detection-of-avalanches

en: seismic avalanche-activity hidden-markov-model monitoring snow

en: Results and Scripts

en: This zip package contains the classification results, coherence results, reference data set, python scripts used for the classification and the start and end times for the pre-processed continuous seismic data. A further readme file is also include for more detailed information.

en: This dataset contains the results obtained by an automatic classification using hidden Markov models of a continuous seismic dataset. To avoid long computational times, we reduced the seismic data using pre-processing step. The start and end times of the windows used for the classification are also included in this dataset. Furthermore, an avalanche reference data set is included and the python scripts used to perform the processing steps and the classification.

avalanche-activity

display_name: avalanche-activity

hidden-markov-model

display_name: hidden-markov-model

monitoring

display_name: monitoring

seismic

display_name: seismic

snow

display_name: snow

en: Automatic detection of avalanches


maintainer: Jonas Stillhard

en: beech forest-in forest-reserves temperate-forests swiss-plateau

en: Results habitat trees

en: The file results_habitat_trees.csv contains results for the number of habitat trees.

en: Results TreMs

en: The file results_trems.csv contains results for the density of TreMs per ha.

en: Data description

en: This document briefly describes the datasets.

en: Lookup

en: The file lookup.csv contains description for the values shown in the 5 result tables.

en: Results lying deadwood

en: The file results_lying_deadwood.csv contains results of the lying deadwood survey.

en: Results trees

en:
The file results_trees.csv contains results of living, standing and lying and dead standing
trees as well as for stumps (trees found on the plot but broken / cut below 1.3 m).

en: Results regeneration

en: The file results_regeneration.csv contains results of the regeneration survey.

en:
The Jorat is one of the largest continously forested areas in the Swiss Plateau. On a forested area of 778 ha, the Parc Naturel du Jorat (PNJ), a periurban parc, has been established in 2022. To document the initial state of the forest within the perimeter of the PNJ, a sample plot inventory (SPI) was carried out on 132 sample plots (SP) in winter 2021/22.
This dataset contains results from this sample plot inventory. It consists of the following files:
- results_trees.csv: Results for or living and dead trees.
- results_regeneration.csv: Results for trees with DBH < 7.0 cm, assessed in three height classes.
- results_lying_deadwood.csv: Results for lying deadwood, assessed no three line transects
- results_trems.csv: Results for occurence of tree related microhabitats (TreMs)
- results_habitat_trees.csv: Results for occurence / densities of trees carrying at least one TreM or with a DBH >= 80 for living trees or >= 36 cm for dead trees respectively.
- lookup.csv: Contains lookup tables which describe the respective results in-depth.
- data_description.pdf: Briefly describes the datasets mentioned above.

beech

display_name: beech

forest-in

display_name: forest-in

forest-reserves

display_name: forest-reserves

swiss-plateau

display_name: swiss-plateau

temperate-forests

display_name: temperate-forests

en: Sample plot inventory data form the Parc Naturel du Jorat


en: conservation amphibians wetlands occupancy-models landscape connectivity

en: Structural connectivity data

en: This file contains structural connectivity data (three different metrics), calculated based on all existing ponds in each year, in long format. See Readme v2.0 for details. Required to run Model code 2.

en: Model code 2, description

media_type: text/html

en: This is the output of the R markdown file Model code 2 that provides JAGS model code and describes how to format the provided data and fit the dynamic occupancy models described in the second associated publication, for a quick overview.

format: HTML

en: Model code 2

en: This R markdown file contains all code and descriptions necessary to load and format the provided data and to fit the dynamic occupancy models described in the second associated publication, including JAGS code for the fitted models.

format: OCTET

en: Model code, description

en: This is the output of the R markdown file that provides JAGS model code and describes how to format the provided data and fit the dynamic occupancy models described in the associated publication, for a quick overview.

en: Readme

en: Description of methods and datasets. Version 1.

en: Original raw data

en: This file contains the original raw monitoring data as provided by the canton of Aargau. Access is restricted and only considered upon request and in consultation with the canton of Aargau.

en: Readme, v 2.0

en: Description of methods and datasets. Version 2.0, including new datasets fro structural and potential population connectivity.

en: Potential population connectivity data

en: This file contains potential population connectivity data (three different metrics), calculated based on all existing and occupied ponds in each year, for each species, in long format. See Readme v2.0 for details. Required to run Model code 2.

en: Model code

en: This R markdown file contains all code and descriptions necessary to load and format the provided data and to fit the dynamic occupancy models described in the associated publication, including JAGS code for the fitted models.

en: Covariate data 2

en: This file contains covariate data that changes over time for 856 ponds in 21 years (long format): whether or not a pond exists in year _t_, the age of constructed ponds in year _t_, structural connectivity of the pond in year _t_.

en: Observation data

en: This file contains detection/non-detection data for the 12 amphibian species between 1999 and 2019 for 3 annual visits. Detectable denotes whether or not a visit j was made to pond i in year t. ObservedID gives a unique ID for the observer collecting the data during visit j to pond i in year t.

en: Covariate data 1

en: This file contains covariate data that does not change over time for 856 ponds: the region the pond is in, whether the pond is old or new (constructed since 1991), elevation, water surface area, fluctuations of the water table (yes, no), the percent forest cover in 100m radius around the pond, the area or large (>6m wide) roads in 1km radius around the pond.

en:
In the canton of Aargau, hundreds of new ponds have been constructed since the 1990s to benefit declining amphibian populations. This dataset consists of monitoring data for all 12 pond-breeding amphibian species in the canton of Aargau from 1999 to 2019 in 856 ponds, and environmental variables that describe the ponds and the landscape surrounding the ponds. Species observation data is detection/non-detection data from repeat visits during survey years, during which all potentially suitable ponds in an area were surveyed. Environmental variables describing the ponds are whether the pond has been newly constructed since 1991 or not, pond age (if constructed), elevation a.s.l., the water surface area, and whether the water table fluctuates or not. Environmental variables describing the surroundings of the ponds are the percent area of forest within a circular buffer of radius 100m around the pond, the area of large (width ≥6m) roads within a circular buffer of radius 1km around the pond, as well as structural and potential population connectivity, quantified by three different metrics each.
The canton of Aargau is the owner of the monitoring data; the original datafile is only disclosed upon request and in consultation with the canton of Aargau.
The edited dataset contains cleaned observation data for the 12 amphibian species, as well as compiled and edited covariate data and code to fit dynamic occupancy models.

amphibians

display_name: amphibians

connectivity

display_name: connectivity

conservation

display_name: conservation

landscape

display_name: landscape

occupancy-models

display_name: occupancy-models

wetlands

display_name: wetlands

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Amphibian observation and pond data (Aargau, Switzerland)


maintainer: Markus Didion

en: stemwood branchwood growing-stock section-wise-diameter allometry tree-volume

en: manuscript submitted for publication.

en: dataset with section-wise stem diameter and branchwood volume measurements. For column definitions see Column_definitions.pdf.

en: definitions of data in columns contained in the dataset Stem&Branchchwood_2024-02-29.txt

en: additional background information on this work

en: Revised version of the initial submission StemBranchwood_Didionetal_initialsubmission.pdf after review.

en: Updated dataset of outdated_Stem&Branchchwood_2024-02-29.txt, including corrections to the assignment of tree species to NFI main species and location information for two additional sites.

en:
The data presented here were prepared for publication in form of a data paper. The dataset presents an update of the information in Didion M, Herold A, Vulovic Z, Nitzsche J, Stillhard J (2022) Datasets for deriving functions for the stem- and branchwood volume in the Swiss National Forest Inventory. EnviDat. doi:https://www.doi.org/10.16904/envidat.358. The new dataset is based on an alternative, more accurate and comprehensive dataset, that was identified as the source of the dataset in Didion et al. 2022. It includes additional data, including newly digitized information.
The dataset includes section-wise stem measurements on 40’349 felled individual trees and empirically derived coarse (diameter >= 7 cm) and fine branch volume of 27’297 and 18’980, respectively, individual trees. The data were collected between 1888 and 1974 across Switzerland covering a large topographic gradient and a diverse species range. The dataset has undergone quality controls and due to its origin from 768 plots of the Experimental Forest Management project long-term consistency is assured.

allometry

display_name: allometry

branchwood

display_name: branchwood

growing-stock

display_name: growing-stock

section-wise-diameter

display_name: section-wise-diameter

stemwood

display_name: stemwood

tree-volume

display_name: tree-volume

en: A dataset of 40000 trees with section-wise measured stem diameter and length and volume of branches from across Switzerland


maintainer: Stefan Klesse

en: temperature-reconstruction tree-ring wood-anatomy mxd paleoclimate

en: This dataset contains the mean chronologies of MXD and QWA of the relict and living wood material presented in Figure 3. It also contains the JJA temperature record of the Salekhard Meteo station.

en:
This dataset contains data presented in Figure 2 in the paper "New Prospects for Temperature Reconstructions from Relict Wood Using Tree-Ring Anatomy".

Sample ID = Sample ID
group = living or relict wood material
Bulk wood density = volumetric measured density (kg / m^3)
Mean Tree Ring Density	= Density derived via X-ray densitometry (kg / m^3)
Cellulose_to_wood ratio = Holo-cellulose-to-wood ratio
Anatomical density = Area of cell wall / (area of cell wall + lumen area)

en: Data (Quantitative Wood Anatomy, Maximum Latewood Density, Volumetric Density, holo-cellulose-to-wood-ratio) used in the manuscript "New Prospects for Temperature Reconstructions from Relict Wood Using Tree-Ring Anatomy". Wood samples stem from Larix sibirica collected in the Yamal region, northeastern Siberia, Russia. We investigated wood properties of living trees and subfossil wood buried in riverbank sediments, dated to approximately -2760 to -2600 BCE. Our goal was to evaluate the integrity of climate proxies in sub-fossil wood and develop practical methods to detect wood degradation when reconstructing Late Holocene and Common Era climate conditions using tree-ring data.

mxd

display_name: mxd

paleoclimate

display_name: paleoclimate

temperature-reconstruction

display_name: temperature-reconstruction

tree-ring

display_name: tree-ring

wood-anatomy

display_name: wood-anatomy

en: Quantitative Wood Anatomy and Maximum Latewood Density from Yamal peninsula


maintainer: Leo Gallus Bont

en: digital-elevation-model open-source swiss-geodata digital-planning seilaplan geoinformation-software qgis-plugin cable-yarding swisstopo

en: View video on youtube!

en: Herunterladen des DHM von swisstopo Website

en:
In order to use the QGIS plugin ‘Seilaplan’ for digital cable line planning, a digital terrain model (DTM) is required. As an alternative to using the ‘Swiss Geo Downloader’ plugin, the DTM can be obtained directly from Swisstopo. In this tutorial we explain step by step how to download the necessary DTM from the Swisstopo Website, and how to use it in QGIS for the digital planning of a cable line using the plugin ‘Seilaplan’. Please note that the tutorial language is German!

Link to the elevation model on the swisstopo website: https://www.swisstopo.admin.ch/de/geodata/height/alti3d.html#technische_details

Link to the rope map website: https://seilaplan.wsl.ch

********************

Für die Verwendung des QGIS Plugins Seilaplan zur digitalen Seillinienplanung ist ein digitales Höhenmodell (DHM) nötig. Als Alternative zum Swiss Geo Downloader erklären wir in diesem Tutorial Schritt für Schritt, wie man das nötige Höhenmodell von der Swisstopo Webseite herunterladen und in QGIS zur Seillinienplanung verwenden kann.

Link zum Höhenmodell auf der swisstopo Webseite: https://www.swisstopo.admin.ch/de/geodata/height/alti3d.html#technische_details

Link zur Seilaplan-Website: https://seilaplan.wsl.ch

cable-yarding

display_name: cable-yarding

digital-elevation-model

display_name: digital-elevation-model

digital-planning

display_name: digital-planning

geoinformation-software

display_name: geoinformation-software

open-source

display_name: open-source

qgis-plugin

display_name: qgis-plugin

seilaplan

display_name: seilaplan

swiss-geodata

display_name: swiss-geodata

swisstopo

display_name: swisstopo

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Seilaplan Tutorial: DTM download from swisstopo website


en: soil-moisture avalanche-activity avalanche snow-profile glide-snow-avalanche

en: This file provides an overview of the dataset, the detailed measurement setup, and points out limitations.

en: This file contains all soil measruements (liquid water content and matric potential) recorded at the reference location.

en: This file contains SNOWPACK simulations (snow height, air temperature, rain) at a virtual station in the reference location. The virtual station was interpolated between the Weissfluhjoch (WFJ2) and Klosters Madrisa (KLO2) IMIS Stations.

en: This file contains all sensor recordings in the Seewer Berg slope (time interval: 15 minutes).

en: This file contains the daily avalanche activity on Dorfberg as extracted from time-lapse photographs.

en: This file contains the aggregated data from manually recorded snow profiles in the reference location, 100m northwest of the Seewer Berg slope and in release areas of glide-snow avalanches in the Seewer Berg slope.

en: This file explains all provided datasets, variables and their units.

en: This file contains the release areas (polygon) of glide-snow avalanches as a shapefile.

en: This file contains the coordinates of the reference location and the sensors in the Seewer Berg slope as a shapefile.

en:
This dataset consists of spatio-temporal soil measurements and local snow measurements which were recorded to investigate glide-snow avalanche release in the Seewer Berg slope (Davos, Switzerland) from Nov 2021 to June 2024. Investigations based on this dataset were published in the research article:
Fees A., Lombardo M., van Herwijnen A., Lehmann P., Schweizer J. (2025). The source, quantity, and spatial distribution of interfacial water during glide-snow avalanche release: experimental evidence from field monitoring. The Cryosphere
The dataset consists of:
- Soil measurements (temperature and liquid water content) at soil depths of -5cm, -10cm, and -20cm
- Matric potential at depths of -5cm, -10cm, and -20cm
- Manual snow profiles (Snow height, temperature, liquid water content, bulk density)
- Metadata and manual snow profiles on glide-snow avalanches that released in the Seewer Berg slope
- Snow height, air temperature and rain simulated with SNOWPACK.

avalanche

display_name: avalanche

avalanche-activity

display_name: avalanche-activity

glide-snow-avalanche

display_name: glide-snow-avalanche

snow-profile

display_name: snow-profile

soil-moisture

display_name: soil-moisture

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Spatio-temporal soil and local snow monitoring in a glide-snow avalanche prone slope above Davos Switzerland


en: dendroecology dendrochronology fagus-sylvatica tree-ring network-analysis beech

en:
This dataset contains the raw ring-width and climate data (1952-2020) used in the research article "No future growth enhancement expected at the northern edge for European beech due to continued water limitation".
RW= ring width
Year= Calendar year
CN = core number
ID3= plot identifier
longitude = longitude (°)
latitude = latitude (°)
elevation = elevation (m)
age= estimated age in calendar year
radius= estimated radius in calendar year (mm)
MAT= mean annual temperature (°C)
MAP= mean annual precipitation (mm)
MCWB= mean climatic water balance (P-PET; mm)
amplitude= simple continentality measure (July - January mean maximum temperatures)
MATspline1 and 2, MCWBspline1 and 2, radiusspline4 and 5= natural spline transformed values of MAT, MCWB and radius ns(x,2)
CWD_pMay_Jun= Climatic Water Balance of previous year May to June !!!#please note CWD here is NOT Climatic Water Deficit, this was a labeling error in the creation of the dataset headers
CWD_May_Jun= Climatic Water Balance of current year May to June
Tmax_pMay_Jun= mean monthly maximum temperature of previous year May to June
Tmax_May_Jun= mean monthly maximum temperature of current year May to June
weight = site replication-based weighting input for model
SOM= membership of regional cluster 1-8 based on Supervised Organized Mapping

en:
R code to run the model behind the results of the research article "No future growth enhancement expected at the northern edge for European beech due to continued water limitation".
Requires beech_rawtrw.txt.

en: Model output

en: Output of the Mixed-effects model

en: This dataset contains the raw ring-width and climate data (1952-2020), as well as the R code to run the model and the model output used in the research article "No future growth enhancement expected at the northern edge for European beech due to continued water limitation".

beech

display_name: beech

dendrochronology

display_name: dendrochronology

dendroecology

display_name: dendroecology

fagus-sylvatica

display_name: fagus-sylvatica

network-analysis

display_name: network-analysis

en: European Beech tree-ring dataset 1952-2020


en: castanea-sativa torymus-sinensis population-evolution pest-invasion biological-control southern-switzerland dryocosmus-kuriphilus

en:
Data has been collected from summer 2011 to 2016.

Main reasons for NA values:

-	D. kuriphilus still not arrived in the site.
-	No galls were found during the field sampling.
-	Site has not been sampled in the correspondent year because of time, weather or money constrains.
-    T. sinensis not found in the galls

Variable description:

Year = sampling year.

Coordinate, elevation, slope, aspect = average site characteristics.

ts_arrival = T. sinensis arrival year.

dk_arrival = D. kuriphilus arrival year.

dk_parasitism_by_ts = D. kuriphilus parasitism rate by T. sinensis. Formula: (no. of T. sinensis/ no. of D. kuriphilus chambers) * 100 at gall level.

dk_infestation = Percentage of attacked buds. Formula: no. of attacked buds / no. of total developed buds*100 (as presented in Kotobuki et al. 1985) at shoot level.

ts_per_bud = number of alive T. sinensis individual calculated at bud level.

dk_per_bud = number of alive D. kuriphilus individual calculated at bud level.

dk_pot_per_bud = overall number (dead and alive) D. kuriphilus individual calculated at bud level.

total_gall_nr_per_bud = average gall number per bud.

chamber_per_galls = average D. kuriphilus chamber number per gall.

For details see the submitted publication with the same name

References
Kotobuki, K., Mori, K. and Sato, Y. (1985) ‘2 methods to estimate the tree damage by chestnut gall wasp Dryocosmus-kuriphilus’, Bulletin of the fruit tree research station A (Yatabe), 2(12), pp. 29–36.

en:
This dataset contains the population evolution of a pest and its biocontrol agent in terms of presence proportion at gall level and absolute number of insects.

The study area extends from the Cuneo region (Piedmont, Italy) to southern Switzerland. In order to provide a complete range of data covering the entire process from the pest arrival to complete biological control by its natural enemy T. sinensis, a space-for-time substitution approach has been adopted so as to create a temporal gradient of the epidemic stages over the whole study area.

The southernmost Swiss sites roughly represent the arrival and establishment of the pest without the presence of the natural enemy, the central ones the early epidemic stage and the epidemic peak, whereas the northern ones the end of the epidemic with the beginning of the biocontrol. The Italian ones represent the beginning of the equilibrium between the two population as well as the situation with stable T. sinensis populations on the long term.

These data are used in the paper entitled: Torymus sinensis local and regional early population dynamics in the Insubrian and Piedmont regions

biological-control

display_name: biological-control

castanea-sativa

display_name: castanea-sativa

dryocosmus-kuriphilus

display_name: dryocosmus-kuriphilus

pest-invasion

display_name: pest-invasion

population-evolution

display_name: population-evolution

southern-switzerland

display_name: southern-switzerland

torymus-sinensis

display_name: torymus-sinensis

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal


en: snow-height snow-temperatures enet weissfluhjoch snow-water-equivalent imis

en: DATA ACCESS

en:
Station WFJ2: merged IMIS + ENET datasets. Provides parameters height of snow, snow surface temperatures and snow temps at 0, 1, 1.5 m above ground surface. Supporting meteo data are also contained in this dataset.

fields      = timestamp TA RH TSG TSS HS VW DW VW_MAX OSWR PSUM VW_DRIFT DW_DRIFT TS1 TS2 TS3 HTS1 HTS2 HTS3

en: This dataset provides HS, TSS and TS50, TS100, TS150 at the station WFJ2 situated on the Weisfluhjoch research site (2536 m asl). It has been created from merging ENET and IMIS datsets to form a continuous timeseries from 1992- present. ENET is at 1 h resolution whereas IMIS is 30 min. This is a level 2 dataset as defined [here](http://models.slf.ch/p/dataset-processing/).

enet

display_name: enet

imis

display_name: imis

snow-height

display_name: snow-height

snow-temperatures

display_name: snow-temperatures

snow-water-equivalent

display_name: snow-water-equivalent

weissfluhjoch

display_name: weissfluhjoch

en: WFJ2: Snow measurements from the Weissfluhjoch research site, Davos


lwf-tea-bag-sites

maintainer: Marcus Schaub

title_for_slug: lwf-tea-bag-sites

en: litter verification decomposition forest roiboos green-tea carbon modeling tea-bag

en: Site Information

en: Descriptive information on sites

en:
Decomposition of plant litter is a key process for the transfer of carbon and nutrients in ecosystems. Carbon contained in the decaying biomass is released to the atmosphere as respired CO2, and may contribute to global warming. Litterbag studies have been used to improve our knowledge of the drivers of litter decomposition, but they lack comparability because litter quality is plant species-specific. The use of commercial tea bags as a standard substrate was suggested in order to harmonize studies, where green tea and rooibos represent more labile and more recalcitrant C compounds as surrogates of local litter.
The tea bag approach was implemented on eight sites of the Swiss long-term Forest Ecosystem Research (LWF) network (https://www.wsl.ch/LWF). This allowed us to take advantage from the existing infrastructure and data from a previous litterbag study with local litter. In Beatenberg and Schaenis, additional elevation transects were established (1200-1800 m and 540-1150 m, respectively) to examine particularly the effect of temperature on decomposition. In Pfynwald (https://www.wsl.ch/de/ueber-die-wsl/versuchsanlagen-und-labors/flaechen-im-wald/pfynwald.html) and Salgesch, infrastructure of running projects was used to examine the effect of drought and understory removal, respectively. In Novaggio, tea bags were incubated in summer and winter to study the effect of seasonality particularly precipitation. Tea bags are collected after 3, 12, 24, and 36 months; for the two time-shifted experiments additionally after 6 and 9 months.
The study has two primary objectives. Firstly, it contributes to TeaComposition initiative (http://teacomposition.org/) which aims at investigating long-term litter decomposition and its key drivers at present as well as under different future climate scenarios using a common protocol and standard litter (tea) across nine terrestrial biomes. Secondly, the data are used to further develop decomposition models such as Yasso (http://en.ilmatieteenlaitos.fi/yasso) which is used by several countries, including Switzerland to estimate the annual carbon fluxes in dead wood, litter, and soil for reporting in National Greenhouse Gas Inventories under the United Nations Framework Convention on Climate Change and the Kyoto Protocol.

carbon

display_name: carbon

decomposition

display_name: decomposition

forest

display_name: forest

green-tea

display_name: green-tea

litter

display_name: litter

modeling

display_name: modeling

roiboos

display_name: roiboos

tea-bag

display_name: tea-bag

verification

display_name: verification

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: LWF-Tea bag sites


en: forest-management example-applications r-package forest-dynamics forest climate-change land-use treemig spatial-modelling species-migration bioclimatic-variables

en: A condensed instruction for running the presented simulations.

en:
1) Simulation environment TMEnvironmentExampleApplications for the simulation of the case study applications. It contains a) simulation settings (folder C), b) species parameters (folder P), c) folders S, R and P for the state files and results and plots to be produced, and the binaries of the TreeMig model.
2) Input data for Switzerland in TMInputData (Climate, soil, land cover, DEM)
3) Several R scripts (folder Scripts) to run and plot the simulations directly from R without having to use the graphical user interface.
For learning how to use TreeMig we recommend the starter kit https://www.doi.org/10.16904/envidat.533.

en: Where the environmental and land use input data come from and how they were processed

en: R-script to install the TreeMig framework and start the graphical user interface

en:
The TreeMig framework allows for an easy application of the forest landscape model TreeMig for simulating forest dynamics in space under changing environmental and land use conditions.
Here, case study examples in Switzerland are given that simulate the dynamics and spatial spread of competing tree species in a region in Switzerland, the invasion of a hypothetical invasive tree species, and the control of this species via a management model coupled to TreeMig. The datasets consist of the installation- and GUI starting-script, example environmental input data for Switzerland, the simulation environment, and further R-scripts for running the simulations and plotting the simulation results directly from R and for coupling TreeMig to the forest management model.

bioclimatic-variables

display_name: bioclimatic-variables

climate-change

display_name: climate-change

example-applications

display_name: example-applications

forest-dynamics

display_name: forest-dynamics

forest-management

display_name: forest-management

land-use

display_name: land-use

r-package

display_name: r-package

spatial-modelling

display_name: spatial-modelling

species-migration

display_name: species-migration

treemig

display_name: treemig

en: Case study applications demonstrating the use and potential of the TreeMig framework v1