maintainer: Ana Beatriz Pierri Daunt

en: green-infrastructure landscape-perception multifunctionality landscape-services literature-review resilience decision-making pdfsearch landscape-ecology sense-of-place ecosystem-services socio-ecological-system landscape-planning planning

en: 6. Protocol

en: 4. Use of any additional concept.

en: 2. Frequency of additional concepts.

en: 1. Frequency of early concepts.

en: 5. Planning steps.

en: 3. Use of any early concept.

en:
Table of content: 1. Frequency of early concepts; 2. Frequency of additional concepts; 3. Use of any early concept; 4. Use of any additional concept, 5. Planning steps; 6. Protocol.

The present dataset is part of the published scientific paper entitled “Landscape ecological concepts in planning: review of recent developments” (Hersperger et al., 2021). The goal of this research was to review recent publications to assess the use of landscape ecological concepts in planning. Specifically, we address the following research questions: Q1. Landscape ecological concepts: What are they? How frequently are they mentioned in current research? Q2. How are landscape ecological concepts integrated in landscape planning?

We analysed all empirical and overview papers that have been published in four key academic journals in the field of landscape ecology and landscape planning in the years 2015–2019 (n = 1918). Four key journals in the field of landscape ecology were selected to conduct the analysis, respectively Landscape Ecology (LE), Landscape Online (LO), Current Landscape Ecology Reports (CLER), and Landscape and Urban Planning (LUP). The title, abstract and keywords of all papers were read in order to identify landscape ecological concepts. Then, all 1918 papers went through a keyword search to identify the use of early and additional concepts. We used the “pdfsearch” package in R programming language and searched for singular and plural forms and different variations of the concepts (see Supplementary material 1, Table A). As a result, we provided four outputs:

  1. Frequency of early concepts. This data provides the total number of times each article used each early concept (Q1). This data was used to produce the Figure 2a at the original publication.

  2. Frequency of additional concepts. This data provides the total number of times each article used each additional concept (Q1). This data was used to produce the Figure 2b at the original publication.

  3. Use of any early concept. This data provides the total number of times each article used any early concept (Q1).
This data was used to produce the Figure 3a at the original publication.

  4. Use of any additional concept. This data provides the total number of times each article used any additional concept (Q1). This data was used to produce the Figure 3b at the original publication.

To address the second question (Q2), the title, abstract and keywords of the papers included in our sample (n=1918 articles) were screened to identify papers that might show how landscape ecological concepts are integrated into planning. We selected 52 empirical papers (see Supplementary material – 4 Integration of landscape ecological concepts into planning), and we provided two outputs:

  5. Planning steps. This data provides the number of times landscape ecological concepts were addressed in each
planning steps in 52 empirical papers analysed in detail (Q2). This data was used to produce the Figure 4 at the
original publication.

  6. Protocol for assessing the integration of landscape ecological concepts into planning. To systematically collect the
data, we used this protocol which addressed the following questions: (a) which type of planning is addressed by the
paper? (b) to which planning level does the paper refer to? (c) which concepts are integrated in any of the planning
steps described above?

decision-making

display_name: decision-making

ecosystem-services

display_name: ecosystem-services

green-infrastructure

display_name: green-infrastructure

landscape-ecology

display_name: landscape-ecology

landscape-perception

display_name: landscape-perception

landscape-planning

display_name: landscape-planning

landscape-services

display_name: landscape-services

literature-review

display_name: literature-review

multifunctionality

display_name: multifunctionality

pdfsearch

display_name: pdfsearch

planning

display_name: planning

resilience

display_name: resilience

sense-of-place

display_name: sense-of-place

socio-ecological-system

display_name: socio-ecological-system

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: The usage of landscape ecological concepts in the planning literature


maintainer: Irmi Seidl

en: renewable-energy switzerland cooperatives community-energy energy-cooperatives

state: active

type: dataset

en: Raw data (.csv)

media_type: text/csv

en: Raw data in csv. format. For comprehension of the data and variable structure, please consult the codebook and the modified questionnaire with variable names.

format: CSV

mimetype: text/csv

en: Questionnaire with variable names

media_type: application/pdf

en: Modified questionnaire with variable names for each item. Should be used together with the data files (.csv or .sav) to reconstruct the data and variable structures.

format: PDF

mimetype: application/pdf

en: Raw date (SPSS)

en: Raw data in sav. format (SPSS). For comprehension of the data and variable structure, please consult the modified questionnaire with variable names.

format: SERVICE

en: Codebook

en: Description of variable attributes and valid n

en:
 Topic of Survey
The data at hand on energy cooperatives in Switzerland were collected in 2016 as part of the project "Collective financing of renewable energy projects in Switzerland and Germany" of the National Research Programme 71 "Managing Energy Consumption". The cooperatives were surveyed on their organizational structure, their activities in electricity and heat generation, their finances, the political context and their assessments of the future.

 Survey Method
The survey was targeted at all energy cooperatives in Switzerland (this is the basic population). The Swiss Commercial Register was searched for cooperatives and specific keywords in order to determine this basic population and collect addresses. This search in May 2016 resulted in a total of 304 energy cooperatives, to which a questionnaire was sent in July 2016. A pre-test with 8 persons had been carried out before the questionnaire was sent out. The questionnaire was provided in German and French. It was sent by mail and an attached letter referred to a link for the digital version if preferred. The online version was designed with the software "Sawtooth". After three weeks, a first, and after six weeks a second reminder letter was sent to those cooperatives that had not yet completed the questionnaire. The returned hardcopy questionnaires were manually entered into the database and then combined with the electronic data from the online survey. In the course of the survey, the total population was reduced from 304 to 289: in 4 cases the survey was not deliverable, 4 cooperatives had dissolved, 6 were not actually energy cooperatives, 1 case had recently changed its legal form. With a response rate of 47%, the final data set comprises 136 responses (from 77 digital and 59 hardcopy questionnaires). However, not all 136 of the returned questionnaires were filled out completely. We checked for answers that seemed contradictory or incomprehensible. If an error could be clearly identified and the correct answer derived, the answer was adjusted, otherwise the answer was replaced by "missing data".

 Anonymization
Participating cooperatives have been assured that their information will be kept confidential and will only be made public anonymously. For this reason, the data have been anonymized in in order to prevent any identification of individual cooperatives.

 How to Use the Data
* The data are available in CSV and SPSS (sav.) format.
* A codebook and a modified version of the used questionnaire are provided to illustrate the data and variable structure. In the questionnaire, the variable names are assigned to the corresponding questions. In the codebook, further information on these variables (valid n, answer categories) can be found. This information (of the codebook) is already integrated in the SPSS file.

 Current Embargo on Data
These data are currently under embargo and will only be released when the project is completed (not before 2020).

#Additional Information
* The used questionnaire is provided in German and French.
* Descriptive results of the survey were published in a WSL report: https://www.dora.lib4ri.ch/wsl/islandora/object/wsl:18943

community-energy

display_name: community-energy

cooperatives

display_name: cooperatives

energy-cooperatives

display_name: energy-cooperatives

renewable-energy

display_name: renewable-energy

switzerland

display_name: switzerland

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Energy Cooperatives in Switzerland: Survey Results // Energiegenossenschaften in der Schweiz: Befragungsergebnisse


maintainer: Gesa von Hirschheydt

en: cryptogams observer-error sessile-species detection-probability swisslichens monitoring lichens biodiversity inter-observer-difference bayesian-inference detectability occupancy-model

media_type: application/zip

en: Repository containing the full data, code, README and workflow files.

format: ZIP

en:
The available lichen data consists of detection/nondetection data (1/0) of 373 tree-inhabiting (*corticolous*) lichen species from 416 plots surveyed 1-2 times. The lichen data were originally collected for the purpose of the Red List of epiphytic lichen species in Switzerland ([Scheidegger *et al.* 2002](https://www.bafu.admin.ch/bafu/de/home/themen/biodiversitaet/publikationen-studien/publikationen/rote-liste-gefaehrdete-arten-baum-erdbewohnende-flechten.html)), but updated to recent nomenclature for the purpose of this study.
This repository contains all the supporting data and R code for the paper:
von Hirschheydt, G., Kéry, M., Ekman, S., Stofer, S., Dietrich, M., Keller, C., Scheidegger, C. (2024) **Occupancy model reveals limited detectability of lichens in a standardised large-scale monitoring**. *Journal of Vegetation Science*.
Results and figures presented in the manuscript should be reproducible (with small differences in the latter digits due to stochasticity of the MCMC sampler) with the provided data and code.
The downloadable `.zip` folder has the following structure:
* `0_data/`
* `1_code/`
* `2_output/`
* `lichen_detectability.Rproj`
* `README.txt`
* `workflow.html`
- `workflow.Rmd`

The main folder and the three subordinate folders each have their own `README*.txt` file. These describe each available file in detail and should be consulted prior to using the data or running any code. The file `lichen_detectability.Rproj` stores the information about the R project. The user can open the project by clicking/double-clicking on this file which will automatically define the repository as working directory for the R session. If the user does not use RStudio/Posit, they may have to set the working directory manually to the stored location in the R files. The files `workflow.*` guide the user through the analysis (`1_code/*.R`) in the correct order so that they can:
- bundle the cleaned data into a data list readable for JAGS
- fit the multi-species occupancy model to the data and store the output
- assess the goodness-of-fit of the model to the data
- conduct a prior sensitivity analysis with 2 additional sets of priors
- extract the summary statistics reported in the manuscript and supplementary materials
- generate the figures shown in the manuscript and supplementary materials

bayesian-inference

display_name: bayesian-inference

biodiversity

display_name: biodiversity

cryptogams

display_name: cryptogams

detectability

display_name: detectability

detection-probability

display_name: detection-probability

inter-observer-difference

display_name: inter-observer-difference

lichens

display_name: lichens

monitoring

display_name: monitoring

observer-error

display_name: observer-error

occupancy-model

display_name: occupancy-model

sessile-species

display_name: sessile-species

swisslichens

display_name: swisslichens

en: Repeated detection-nondetection data of corticolous lichens from a standardised monitoring across Switzerland


climarctic-seasons

maintainer: Aline Frossard

title_for_slug: climarctic-seasons

en: microbial-functions microbial-biodiversity greenhouse-gases soil arctic

en: Climarctic seasons dataset Envidat.xlsx

en:
Samples description
•	sample number: sample list number (S1 to S126)
•	season: season during which the samples were collected
•	location: one of the two location where the samples were collected in the vicinity of Ny Alesund on Svalbard
•	slope site: sites where the samples were collected along the toposequence (upslope = top of the slope, midslope = middle of the slope, downslope = bottom of the slope)
•	soil layer: depth layer where the sample were collected (biocrust = 0-2 cm and mineral soil = 5-10 cm)
•	replicate: replicated sampled (3 replicates per site)
Environmental variables
•	pH = pH value of the soil
•	sand = proportion of sand of the soil [%]
•	silt = proportion of silt of the soil [%]
•	clay = proportion of clay of the soil [%]
•	GWC = Gravimetric Water content in the soil [%]
•	OM = Organic Matter content in the soil [g]
•	N = Total Nitrogen content in soil [mg/g]
•	C = Total Carbon content in soil [mg/g]
•	C/N = ration of C content over N content [ratio]
•	NO3 = Nitrate content in soil [mg/kg]
•	NO2 = Nitrite content in soil [mg/kg]
•	NH4 = Ammonium content in soil [mg/kg]
•	Ptot = Total Phosphorus content in soil [mg/kg]
•	Pavail = Available Phosphorus content in soil [mg/kg]
•	PO4 = Phsphate content in soil [mg/kg]
•	CO2 = CO2 fluxes from soil [mmol CO2 m-2 d-1]
•	CH4 = CH4 fluxes from soil [umol CH4 m-2 d-1]
•	N2O = N2O fluxes from soil [umol CH4 m-2 d-1]
•	GPP = Gross Primary Production [mmol CO2 m-2 d-1]
•	ER = Ecosystem respiration [mmol CO2 m-2 d-1]
•	NEE = Net Ecosystem Exchange [mmol CO2 m-2 d-1]
•	glucoOM = glucosidase enzyme activity [mmol h-1 gOM-1]
•	23 xyloOM = xylosidase enzyme activity [mmol h-1 gOM-1]
•	chitOM = N-acetyl-glucosaminidase (chitinase) enzyme activity [mmol h-1 gOM-1]
•	phosOM = phosphatase enzyme activity [mmol h-1 gOM-1]
•	leuOM = leucine-aminopeptidase enzyme activity [mmol h-1 gOM-1]
•	PPOM = Polyphenol Peroxidase enzyme activity [mmol h-1 gOM-1]
•	POOM = Polyphenol Oxidase enzyme activity [mmol h-1 gOM-1]
•	30. Bac16SOM = Bacterial 16S gene abundance [copies gOM-1]
•	31. BacamoAOM = Bacterial amoA gene abundance [copies gOM-1]
•	32. ArchamoAOM = Archaeal 16S gene abundance [copies gOM-1]
•	33. nifHOM = nifH gene abundance [copies gOM-1]
•	34. nirSOM = nirS gene abundance [copies gOM-1]
•	35. nosZOM = nosZ gene abundance [copies gOM-1]
•	36. nxrBOM = nxrB gene abundance [copies gOM-1]
•	37. mcrAOM = mcrA gene abundance [copies gOM-1]
•	38. pmoAOM = pmoA gene abundance [copies gOM-1]

format: XLS

en: This dataset includes measurements of potential microbial functions (potential extracellular enzyme activities and microbial functional genes abundance) and soil physico-chemical properties (pH, nutrients, texture, etc) in biocrusts and underlying mineral soils in High-Arctic tundra near Ny-Ålesund (Svalbard) during each season along a toposequence.

arctic

display_name: arctic

greenhouse-gases

display_name: greenhouse-gases

microbial-biodiversity

display_name: microbial-biodiversity

microbial-functions

display_name: microbial-functions

soil

display_name: soil

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Climarctic seasons


maintainer: Yves Bühler

en: hazard-mapping hazard-indication-mapping snow release ramms avalanche

en: Potential Release  Area  NHESS

en: This folder contains the output of the different investigated algorithms plus the reference dataset, used for training and validation.

mimetype: application/zip

en: RAMMS simulations NHESS

en: Simulated maximum pressures for the scenarios frequent and extreme taking the forest layer into account

en:
This dataset contains the output and reference data published in the paper "Automated snow avalanche release area delineation - validation of existing algorithms and proposition of a new object-based approach for large scale hazard indication mapping" Yves Bühler, Daniel von Rickenbach, Andreas Stoffel, Stefan Margreth, Lukas Stoffel, Marc Christen (2018) Natural Hazards And Earth System Sciences.

Abstract:
Snow avalanche hazard is threatening people and infrastructure in all alpine regions with seasonal or permanent snow cover around the globe. Coping with this hazard is a big challenge and during the past centuries, different strategies were developed. Today, in Switzerland, experienced avalanche engineers produce hazard maps with a very high reliability based on avalanche cadastre information, terrain analysis, climatological datasets and numerical modelling of the flow dynamics for selected avalanche tracks that might affect settlements. However, for regions outside the considered settlement areas such area-wide hazard maps are not available mainly because of the too high cost, in Switzerland and in most mountain regions around the world. Therefore, hazard indication maps, even though they are less reliable and less detailed, are often the only spatial planning tool available. To produce meaningful and cost-effective avalanche hazard indication maps over large regions (regional to national scale), automated release area delineation has to be combined with volume estimations and state-of-the-art numerical avalanche simulations.

In this paper we validate existing potential release area (PRA) delineation algorithms, published in peer-reviewed journals, that are based on digital terrain models and their derivatives such as slope angle, aspect, roughness and curvature. For validation, we apply avalanche cadastre data from three different ski resorts in the vicinity of Davos, Switzerland, where experienced ski-patrol staff mapped most avalanches in detail since many years. After calculating the best fit input parameters for every tested algorithm, we compare their performance based on the reference datasets. Because all tested algorithms do not provide meaningful delineation between individual potential release areas (PRA), we propose a new algorithm based on object-based image analysis (OBIA). In combination with an automatic procedure to estimate the average release depth (d0), defining the avalanche release volume, this algorithm enables the numerical simulation of thousands of avalanches over large regions applying the well-established avalanche dynamics model RAMMS. We demonstrate this for the region of Davos for two hazard scenarios, frequent (10 – 30 years return period) and extreme (100 – 300 years return period). This approach opens the door for large scale avalanche hazard indication mapping in all regions where high quality and resolution digital terrain models and snow data are available.

avalanche

display_name: avalanche

hazard-indication-mapping

display_name: hazard-indication-mapping

hazard-mapping

display_name: hazard-mapping

ramms

display_name: ramms

release

display_name: release

snow

display_name: snow

en: Automated Avalanche Release Area (PRA) Delineation Davos


data-interactive-avalanche-segmentation

maintainer: Elisabeth D. Hafner

title_for_slug: data-interactive-avalanche-segmentation

en: segmentation avalanche snow deep-learning interactive

en:
Images and corresponding avalanche annotations used for interactive avalanche segmentation:
SLF train, vali and test
WebNew
GroundPic
UserPic
UIBK dataset: List of images used
Pictures are from SLF (mostly from the Dischma Cams) if not otherwise indicated. If used, the data needs to be properly cited!

deep-learning

display_name: deep-learning

interactive

display_name: interactive

segmentation

display_name: segmentation

en: Data interactive avalanche segmentation


maintainer: EnviDat Support

en: dendrochronology fagus-sylvatica dendroecology network-analysis beech tree-ring

media_type: text/plain

en:
This dataset contains the raw ring-width and climate data (1952-2020) used in the research article "No future growth enhancement expected at the northern edge for European beech due to continued water limitation".
RW= ring width
Year= Calendar year
CN = core number
ID3= plot identifier
longitude = longitude (°)
latitude = latitude (°)
elevation = elevation (m)
age= estimated age in calendar year
radius= estimated radius in calendar year (mm)
MAT= mean annual temperature (°C)
MAP= mean annual precipitation (mm)
MCWB= mean climatic water balance (P-PET; mm)
amplitude= simple continentality measure (July - January mean maximum temperatures)
MATspline1 and 2, MCWBspline1 and 2, radiusspline4 and 5= natural spline transformed values of MAT, MCWB and radius ns(x,2)
CWD_pMay_Jun= Climatic Water Balance of previous year May to June !!!#please note CWD here is NOT Climatic Water Deficit, this was a labeling error in the creation of the dataset headers
CWD_May_Jun= Climatic Water Balance of current year May to June
Tmax_pMay_Jun= mean monthly maximum temperature of previous year May to June
Tmax_May_Jun= mean monthly maximum temperature of current year May to June
weight = site replication-based weighting input for model
SOM= membership of regional cluster 1-8 based on Supervised Organized Mapping

format: TXT

en:
R code to run the model behind the results of the research article "No future growth enhancement expected at the northern edge for European beech due to continued water limitation".
Requires beech_rawtrw.txt.

format: OCTET

en: Model output

en: Output of the Mixed-effects model

en: This dataset contains the raw ring-width and climate data (1952-2020), as well as the R code to run the model and the model output used in the research article "No future growth enhancement expected at the northern edge for European beech due to continued water limitation".

beech

display_name: beech

dendrochronology

display_name: dendrochronology

dendroecology

display_name: dendroecology

fagus-sylvatica

display_name: fagus-sylvatica

network-analysis

display_name: network-analysis

tree-ring

display_name: tree-ring

en: European Beech tree-ring dataset 1952-2020


en: wingtra uav photogrammetry orthophoto dsm snow-depth-mapping drone-data

en: Data Access

en:
- DSM (10 cm resolution)
- Ortho (3 cm resolution)
- HS (10 cm resolution)
- original RGB drone images
- Agisoft Metashape Processing Report

All products are also available as a cloud optimized geotiff.

en: To map and assess snow depth on different dates, 9 flights were conducted in the winter season of 2020/21 at the Latschüelfurgga in Davos. The data was captured with a Sony RX1R II mounted on a Wingtra drone and was processed with the Agisoft Metashape software. High-resolution DSMs, orthomosaics and snow height rasters, as well as the original RGB images from each flight are available.

drone-data

display_name: drone-data

dsm

display_name: dsm

orthophoto

display_name: orthophoto

photogrammetry

display_name: photogrammetry

snow-depth-mapping

display_name: snow-depth-mapping

uav

display_name: uav

wingtra

display_name: wingtra

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Photogrammetric Drone Data Latschuelfurgga


maintainer: Jan Magnusson

en: hydrology dischma modelling inarch cryosphere snow

en: Dischma dataset - v20241219

en: The .zip file contains all data as described in this repository and associated publication. The .zip file contains a readme file describing its content in detail.

en:
This repository contains data from the alpine Dischma watershed and its surroundings in eastern Switzerland and includes: (a) hourly hydrometeorological data with 100m spatial resolution, (b) remotely sensed snow depth data with 100m spatial resolution obtained at peak of winter, and (c) station measurements of variables such as snow depth and catchment runoff.
This dataset is particularly suited for (a) different simulation experiments using distributed and process-based models, including physics-based snow and hydrological models, (b) testing various snow data assimilation schemes, and (c) developing models representing snow-forest interactions.
The dataset is described in detail in:
Magnusson, J., Bühler, Y., Quéno, L., Cluzet, B., Mazzotti, G., Webster, C., Mott, R., and Jonas, T.: High-resolution hydrometeorological and snow data for the Dischma catchment in Switzerland, Earth Syst. Sci. Data Discuss. [preprint], https://doi.org/10.5194/essd-2024-374, in review, 2024.
This dataset was published within the INARCH project:
https://inarch.usask.ca/

cryosphere

display_name: cryosphere

dischma

display_name: dischma

hydrology

display_name: hydrology

inarch

display_name: inarch

modelling

display_name: modelling

snow

display_name: snow

en: A high-resolution snow and hydrometeorological dataset for the Dischma region in Switzerland


maintainer: Marco Moretti

en: honeybees urbanization sustainability urban-biodiversity pollination remote-sensing

en: Dataset 2

en: Dataset 2: Processed data for modelling balance urban greenspace

en: Not used:

en: Not used for the analyses and not link to the paper.

en: Dataset 3

en: Dataset on the the number of beehives and apiaries on the years 2012, 2013, 2014, 2015, 2016, 2017, 2018 in several Swiss cities.

en: Dataset 1

en: Dataset 1: Processed data for urban beekeeping 2012 & 2018

en: Data on: (1) (Dataset 1) spatial distribution of urban beekeeping (number of hives and number of beekeeping locations) in 14 Swiss cities (Geneva, Lausanne, Biel, Neuchatel, Basel, Zurich, Chur, Luzern, St. Gallen, Winterthur, Bern, Lugano, Bellinzona, Thun) for the period 2012-2018; (2) (Dataset 2) aggregated data to model the sustainability of urban beekeeping.

honeybees

display_name: honeybees

pollination

display_name: pollination

remote-sensing

display_name: remote-sensing

sustainability

display_name: sustainability

urban-biodiversity

display_name: urban-biodiversity

urbanization

display_name: urbanization

en: Challenging the sustainability of urban beekeeping: evidence from Swiss cities


en: cross-resistance invasive-species intraspecific-variation fraxinus ash-dieback defense-chemistry emerald-ash-borer

en: Raw data-Publication cross-resistance in ash-New Phytologist

en:
What are the research data files about: Raw data on perfomance (dry weight, development and mortality) of emerald ash borer larvae used in published bioassays. Raw data on ash dieback leasion lenghts. Raw data on untargeted and targeted specialized ash metabolites.
Which methods were used: Bioassays in greenhouses and climate chambers to collect data on emerald ash borer and ash dieback perfomance. Phytochemical analyses on ash phloem for quantifiying specialized metabolites
When and where was the data created / extracted: Summer 2020-2021

en:
 What are the research data files about: Raw data on perfomance (dry weight, development and mortality) of emerald ash borer larvae used in published bioassays. Raw data on ash dieback leasion lenghts. Raw data on untargeted and targeted specialized ash metabolites.

Which methods were used: Bioassays in greenhouses and climate chambers to collect data on emerald ash borer and ash dieback perfomance. Phytochemical analyses on ash phloem for quantifiying specialized metabolites.

When and where was the data created / extracted: Summer 2020-2021

ash-dieback

display_name: ash-dieback

cross-resistance

display_name: cross-resistance

defense-chemistry

display_name: defense-chemistry

emerald-ash-borer

display_name: emerald-ash-borer

fraxinus

display_name: fraxinus

intraspecific-variation

display_name: intraspecific-variation

invasive-species

display_name: invasive-species

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Raw data-Publication cross-resistance in ash - New Phytologist


en: wetlands historical-carthography switzerland environmental---history ecology environmental--policy

en: Wetlands 1850 - 2010 (shapefiles)

en:
 History of wetlands - GIS-Layers
 Location of wetlands based on signatures in topographic maps
* Basis 1850: original measuring table sheets Dufour created between the years 1834 and 1863.
* Basis 1900/ Basis 1950: The Siegfried maps were updated and published at regular intervals between 1870 and 1949. This long period of time made it possible to reconstruct wetlands for two periods based on the Siegfried Maps: the first edition (hereinafter referred to as "1900") and the last edition ("1950").
* Basis 2010: Map sheets from the National Map from 2006 to 2011 were used for the most recent time period of the reconstruction.
 Location of wetlands due to reconstructions
The reconstruction **must not** be interpreted in the sense of a surface-accurate separation, but shows without claim to location accuracy the approximate extent of the areas that would have corresponded to the mapping criteria for wetlands used in today's topographic maps around 1850, 1900 and 1950. The basics can be found in Stuber & Bürgi 2019, chapter 5.4.

en:
Naturally, large parts of the Swiss Plateau are characterised by wetlands
and meandering rivers. That this is no longer the case today is the result
of centuries of efforts to obtain dry land. But how did this process take
place? What were the relevant actors and what were their motivations? And
what can be said about the ecological consequences of this development?

In a research project on the history of wetlands in Switzerland since 1700,
we conducted (a) a historical analysis of the development of land use in
wetlands and the actors involved, (b) a historical-cartographic
reconstruction of wetland extent since 1850 and (c) an evaluation of
ecological effects of changes in wetlands on various organisms groups.

The series of GIS layers on wetland history stem from the second part of
the project. The area reconstruction is based on digitized and homogenized
signatures from national map series, as they have been available since
about 1850. Details about the digitalization process and the homogenization
procedures applied ("Rekonstruktionen") are included in Stuber & Bürgi
2019.

Book Citation:
 > Stuber M, Bürgi M (2019) Vom «eroberten Land» zum Renaturierungsprojekt. Geschichte der Feuchtgebiete in der Schweiz seit 1700. "Bristol Schriftenreihe", Band 59. Haupt Verlag, Bern, Stuttgart, Wien. 262 Seiten.

ecology

display_name: ecology

environmental---history

display_name: environmental---history

environmental--policy

display_name: environmental--policy

historical-carthography

display_name: historical-carthography

switzerland

display_name: switzerland

wetlands

display_name: wetlands

en: History of wetlands in Switzerland since 1850


defoliation-growth-data

title_for_slug: defoliation-growth-data

en: tree-growth defoliation relative-growth literature-review forest-health

en:
Using a literature review extracted data from 26 published papers which had data on individual tree defoliation and growth relationships In Europe.
This data set includes 415 defoliation-growth data points from 16 different tree species covering 15+ countries in Europe. Growth metrics used in individual papers were different, and included increments in terms of volume, tree rings width, radial growth, basal area and biomass. All growth metrics were converted into relative growth (presented in this dataset), expressed as a percentage of the growth of progressively defoliated trees in relation to the growth of those trees adopted as reference (control) defoliation level (i.e. the growth of the lowest defoliation level in each study was used as the reference growth point).

defoliation

display_name: defoliation

forest-health

display_name: forest-health

literature-review

display_name: literature-review

relative-growth

display_name: relative-growth

tree-growth

display_name: tree-growth

en: Defoliation-Growth data


maintainer: Ionuț Iosifescu Enescu

en: huge map 100GB

media_type: image/tiff

format: TIFF

mimetype: image/tiff

en: Bulk Data Access

en: Link to the S3 bucket where all the data resources can be downloaded in bulk

en: map 0.5GB

en: map 1GB

en: map 2GB

en: large map 10GB

en: map 0.2GB

en: map preview 0.5MB

mimetype: image/jpeg

en:
The attached data are some large GIS raster files (GeoTIFFs) made with Natural Earth data. Natural Earth is a free vector and raster map data @ naturalearthdata.com. The data used for creating these large files was the "Cross Blended Hypso with Shaded Relief and Water". Data was concatenated to achieve larger and larger files. Internal pyramids were created, in order that the files can be opened easily in a GIS software such as QGIS or by a (future) GIS data visualisation module integrated in EnviDat.

Made with Natural Earth. Free vector and raster map data @ naturalearthdata.com

gis

display_name: gis

large-files

display_name: large-files

natural-earth

display_name: natural-earth

qgis

display_name: qgis

en: Large GIS raster data derived from Natural Earth Data (Cross Blended Hypso with Shaded Relief and Water)


en: hymennoptera urbanization cities life-history-traits hymenoptera natural-enemies urban-ecology performance-traits richness cavity-nesting bees wasps

en: Taxonomic metrics on the natural enemies

en: It contains the species richness and the abundance of natural enemies per site.

en: Information on the study sites

en: For each site, the IDs, city, coordinates, structure where the trapnest was attached and height is provided

en: Performance traits and life-history traits

en:
It contains the data of two performance traits (survival and parasitism) and two life-history traits (sex ratio and number of offspring per nest for the hosts) at the nest level.

We assessed performance traits, i.e. survival and parasitism, at the individual cell level. Specifically, for each cell within a nest, we noted whether the cell was alive or dead (survival), and whether it had a parasite or not (parasitism). Further, we calculated the parasitism rate as the number of cells with a parasite divided by the total number of cells. Concerning life-history traits, we calculated the total number of brood cells per nest as the total number of brood cells within a single nest, regardless of whether the larvae were dead, alive or parasitized. Finally, we used the probability that a femalehost emerged from a given cell as a proxy for the sex ratio. To do so, we first identified the sex of the individual hosts. Then, we noted it in a binary way to indicate whether the host was a female or not. We could identify the sex of all hatched hosts. Further, because CNBW first lay females and then males, on some occasions we could also identify the host sex in dead and parasitized cells, that is, when we had already identified the sex of the preceding and the following cells.

en: Predictors of the study

en: Taxonomic metrics on CNBW

en:
The data contains at the site level the species richness of cavity-nesting bees and wasps. It also contains site level estimates of the life-history traits and the performance traits.

We calculated species richness, abundance, and number of nests of the hatched hosts separately for bees and wasps. We calculated the abundance of hatched hosts as the number of brood cells where an individual emerged, i.e. the total number of brood cells minus the number of parasitized cells and the number of cells with no emergence for reasons other than parasitism.

City codes: An =Antwerp, Pa = Paris; Po = Poznan; Ta =Tartu; Zu= Zurich

en:
 Background
Urban ecosystems are associated with socio-ecological conditions that can filter and promote taxa. However, the strength of the effect of ecological filtering on biodiversity could vary among biotic and abiotic factors. Here, we provide the data used to investigate the effects of habitat amount, temperature, and host-enemy biotic interactions in shaping communities of cavity-nesting bees and wasps (CNBW) and their natural enemies. To do so, we installed trap-nests in 80 sites distributed along urban intensity gradients in 5 European cities (Antwerp, Paris, Poznan, Tartu and Zurich). We quantified the species richness and abundance of CNBW hosts and their natural enemies, as well as two performance traits (survival and parasitism) and two life-history traits (sex ratio and number of offspring per nest for the hosts).
The dataset contains:
* The taxonomic metrics on CNBW
* The taxonomic metrics on the natural enemies from CNBW
* The life-history traits and performance traits

bees

display_name: bees

cavity-nesting

display_name: cavity-nesting

cities

display_name: cities

hymennoptera

display_name: hymennoptera

hymenoptera

display_name: hymenoptera

life-history-traits

display_name: life-history-traits

natural-enemies

display_name: natural-enemies

performance-traits

display_name: performance-traits

richness

display_name: richness

urban-ecology

display_name: urban-ecology

urbanization

display_name: urbanization

wasps

display_name: wasps

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Community structure, life-history traits and performance traits of urban cavity-nesting bees annd wasps


en: water-front weissfluhjoch ice-layers snowmicropen snow-temperature snow-stratigraphy

en: README

mimetype: text/plain

en: WFJ_ICE_LAYERS dataset

en: The WFJ_ICE_LAYERS dataset contains multi-instrument snowpack measurements at high temporal resolution, which enable to monitor the formation of deep ice layers due to preferential water flow, at the Weissfluhjoch research site, Davos, Switzerland. It covers the winter 2016/2017, with a focus on the early melting season. This dataset includes traditional snowpack profiles (weekly resolution, 15/11/2016-29/05/2017), SnowMicroPen penetration resistance profiles (daily resolution, 01/02/2017-19/04/2017), snow temperatures measured at different heights in the snowpack (half-hourly resolution, 01/03/2017-15/04/2017) and the water front height derived from an upward-looking ground penetrating radar (3-hour resolution, 04/03/2017-08/04/2017). The measurements are complemented by initialization files for SNOWPACK model simulations with the ice reservoir parameterization at Weissfluhjoch for the winter 2016/2017.

ice-layers

display_name: ice-layers

snow-stratigraphy

display_name: snow-stratigraphy

snow-temperature

display_name: snow-temperature

snowmicropen

display_name: snowmicropen

water-front

display_name: water-front

weissfluhjoch

display_name: weissfluhjoch

en: WFJ_ICE_LAYERS: Multi-instrument data for monitoring deep ice layer formation in an alpine snowpack


maintainer: Matthias Haeni

en: wind-speed par meteorology temperature long-term swiss-forest-lab climate-change relative-humidity meteo precipitation

en: Data plot of the field station (NAF)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Field station data (NAF)

en: Data file.

en: Forest station data (NAB)

en: Site photo of the forest station (NAB)

en: Site photo of the forest station from the side.

en: Data plot of the forest station (NAB)

en: Site photo of the field station (NAF)

en: Site photo of the field station form the side.

en: Site aerial photo (Nationalpark)

en: Site aerial photo from both Nationalpark stations. Source: Google. 2016. Site aerial photo from both Nationalpark stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Nationalpark in Switzerland where one station is located within a natural coniferous forest stand (NAB) with mountain pine (_Pinus mugo_; 210 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, NAF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Nationalpark is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Nationalpark, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


en: nematodes soil-chemistry restoration soil-biodiversity biodiversity fungi soil bacteria topsoil-removal plants soil-biology grassland

en: Fungi data

en:
Sample.data
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)

Taxonomy
OTU.ID	consecutive numbers for operational taxonomic units (OTUe 1-7794)
Taxonomic rank	Domain, Phylum, Class, Order, Family, Genus, Species

Abundance
columns	Plot.ID (see Sample.data)
rows	OTU.ID (see Taxonomy)

en: Ecosystem coupling_interactions

en:
Treatment	Treatment groups; Y.4-18 = restored grasslands; Initial = intensively managed grasslands; Target = species-rich semi-wet to semi-dry grasslands
Type	Interactions type; A.A = abiotic.abiotic; A.B = abiotic.biotic; B.B = biotic.biotic
Correlation	non-parametric Spearman rank correlations between biotic and abiotic parameters (ecological interactions)

en: Vegetation data

en:
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)
column I-LW	Plant abundance per species (in total 327 plant species) expressed as cover percentage estimation according to van der Maarel (vdM 1979; 7 classes: 1-7); nomenclature according to Lauber & Wagner (1996)

en: Networks

en:
Treatment	Treatment groups; Y.4-18 = restored grasslands; Initial = intensively managed grasslands; Target = species-rich semi-wet to semi-dry grasslands
Correlation	non-parametric Spearman rank correlations
Vertex.1+2	Comparison between network components; N.pool = total soil nitrogen pool [kg ha-1 12 cm-1]; Corg.pool = soil organic carbon pool [kg ha-1 12 cm-1], pH = soil pH [CaCl2]; BD = bulk density [g cm-3]; FC = field capacity [%]
	PCoA 1 + 2 biotic communities [Veg = vegetation; Nem = nematoda; Fun = fungi; Prok = prokaryota]
Type	Interactions type; A.A = abiotic.abiotic; A.B = abiotic.biotic; B.B = biotic.biotic

en: Soil properties

en:
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)
N.pool	Soil nitrogen pool (June 2017); corrected for bulk density and 12 cm sampling depth [kg ha-1 12cm-1]
Corg.pool	Soil organic carbon pool (June 2017); corrected for bulk density and 12 cm sampling depth [kg ha-1 12cm-1]
pH	soil pH [CaCl2]
BD	Bulk density [g cm-3]
FC	Field capacity [%]
Veg.1	principle coordinate axis 1 (vegetation)
Veg.1	principle coordinate axis 2 (vegetation)
Nem.1	principle coordinate axis 1 (nematoda)
Nem.2	principle coordinate axis 2 (nematoda)
Fun.1	principle coordinate axis 1 (fungi)
Fun.2	principle coordinate axis 2 (fungi)
Prok.1	principle coordinate axis 1 (prokaryota)
Prok.2	principle coordinate axis 2 (prokaryota)
Veg.H	Shannon diversity (vegetation)
Nem.H	Shannon diversity (nematoda)
Fun.H	Shannon diversity (fungi)
Prok.H	Shannon diversity (prokaryota)

en: Nematode data

en:
Sample.data
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)

Taxonomy
ASV.ID	unit number.letter code per amplicon sequence variant (in total 904)
Taxonomic rank	Phylum, Class, Order, Family, Genus, Species

Abundance
columns	Plot.ID (see Sample.data)
rows	ASV.ID (see Taxonomy)

en: Distance to target results

en:
Community	biotic community (vegetation, nematoda, fungi, prokaryota)
Treatment	Treatment groups; Y.4-30= restored grasslands (time since restoration); Initial=intensively managed grasslands (I)
Comparison	within- or between-community Bray-Curtis dissimilarity distance comparison
Label	within-community distances of initial/restored grasslands: treatment abbreviation; between-communities distances of initial/restored-to-target grasslands: treatment abbreviation plus Target (T; species-rich grasslands)
mean	Mean distance to Target (6 plots per treatment group)
sd	Standard deviation of distances to Target (6 plots per treatment group)

en:
This dataset contains all data, on which the following publication below is based.

Paper Citation:

_Resch, M.C., Schütz, M., Ochoa-Hueso, R., Buchmann, N., Frey, B., Graf, U., van der Putten, W.H., Zimmermann, S., Risch, A.C. (in review). Long-term recovery of above- and belowground interactions in restored grassland after topsoil removal and seed addition. Journal of Applied Ecology_

Please cite this paper together with the citation for the datafile.

Study area and experimental design
The study was conducted in and around two nature reserves, Eigental and Altläufe der Glatt, which were located approximately 5 km apart (47°27´ to 47°29´ N, 8°37´ to 8°32´ E, 417 to 572 m a.s.l., Canton of Zurich, Switzerland; Figure S1 and S2, Table S1). Mean annual temperature and precipitation are 9.8 ± 0.6 °C and 990 ± 168 mm (Kloten climate station 1988-2018; MeteoSchweiz, 2019). TFor this study, we used a space-for-time approach based on eight restoration sites that were between 3 and 32 years old. We measured recovery and restoration success by comparing the restored grasslands with intensively managed and semi-natural grasslands. Using a space-for-time approach requires high similarities in historical properties of the site, such as soil conditions and management regimes, to assure that temporal processes are appropriately represented by spatial patterns (Walker et al., 2010). This was the case in our study. The restored sites had similar soil conditions (i.e., soil type, structure, water availability) as the targeted semi-natural grasslands, while they shared the same agricultural legacy with intensively managed grasslands, i.e., biomass harvest and fertilization (manure and/or slurry) three to five times a year as well as tillage. We randomly established three 5 m x 5 m (25-m2) plots for plant identification and three 2 m x 2 m (4-m2) subplots for soil biotic and abiotic data collection at least 2 m away from the 25-m2 plots in each restoration site. Sites of similar age were grouped into four age classes: Y.4 (3 & 4 years after restoration), Y.18 (17 & 19 years), Y.24 (23 & 25 years), and Y.30 (27 & 32 years). Six intensively managed (Initial) and six semi-natural grassland (Target) sites complemented the experimental set-up, for a total of 36 plots. All plots were sampled under similar conditions, i.e., day of the year, air temperature, soil moisture, and time since last rain event, in June/July 2017 (intensively managed and semi-natural plots) and 2018 (restored plots).

Collection of plants and selected soil biota data
Plant species cover (in %) was visually estimated in each 25-m2 plot in mid-June (Braun-Blanquet, 1964; nomenclature: Lauber & Wagner, 1996). We calculated Shannon diversity and assessed plant community structure. We included soil microbial (fungi, procaryotes) and nematodes in our study as they represent the majority of soil biotic diversity and abundance (Bardgett & van der Putten, 2014), cover various trophic levels of the soil food web (Bongers & Ferris, 1999), and play key roles in soil functioning and ecosystem processes (Bardgett & van der Putten, 2014). In particular, soil nematodes were found to be well suited belowground indicators to evaluate recovery/development after restoration (e.g. Frouz, et al. 2008; Kardol et al., 2009; Resch et al., 2019). We randomly collected ten soil cores (2.2 cm diameter x 12 cm depths; sampler from Giddings Machine Company, Windsor, USA) in the 4-m2 subplots to assess soil nematode and microbial (fungal, prokaryotic) diversities and community structures. For soil nematodes, eight of the soil cores were combined and gently homogenized, placed in coolers and stored at 4 °C and transported to the laboratory (Netherlands Institute of Ecology, NIOO, Wageningen, Netherlands) within three days after collection. Free-living nematodes were extracted from 200 g of fresh soil using Oostenbrink elutriators (Oostenbrink, 1960). After extraction, each sample was divided into three subsamples, two for molecular identification and one to determine nematode abundance (see Resch et al., 2019). For the molecular work, two subsamples were stored in 70% ethanol (final volume 10 mL each) and transported to the laboratory at the Swiss Federal Research Institute WSL (Birmensdorf, Switzerland). Each subsample was reduced to roughly 200 μL by centrifugation and removal of the supernatant. The remaining ethanol was vaporized (65 °C for 3 h). Thereafter, 180 μL ATL buffer solution (Qiagen, Hilden, Germany) was immediately added and samples were stored at 4 °C until further processing. From these samples, nematode metagenomic DNA was extracted using the DNeasy Blood & Tissue Kit (Qiagen, Hilden, Germany) according to the manufacturer`s protocol, except for the incubation step which was run at 56 °C for 4 h. PCR amplification of the V6-V8 region of the eukaryotic small-subunit (18S) was performed with 7.5 μL of genomic DNA template (ca. 1 ng/μL) in 25 μL reactions containing 5 μL PCR reaction buffer, 2.5 mM MgCL2, 0.2 mM dNTPs, 0.8 μM of each primer (NemF: Sapkota & Nicolaisen, 2015; 18Sr2b: Porazinska et al., 2009), 0.5 μL BSA, and 0.25 μL GoTaq G2 Hot Start Polymerase (Promega Corporation, Madison, USA). Amplification was using an initial DNA denaturation step of 95 °C for 2 min, followed by 35 cycles at 94 °C for 40 sec, 58 °C for 40 sec, 72 °C for 1 min, and a final elongation step at 72 °C for 10 min. Filtering, dereplication, sample inference, chimera identification, and merging of paired-end reads was implemented using the DADA2 pipeline (v.1.12; Callahan et al., 2016) to finally assign amplicon sequence variants (ASVs) as taxonomic units.
We combined and homogenized the remaining two soil cores to assess soil microbes, placed them in coolers (4 °C) and transported them to the laboratory at WSL. Metagenomic DNA was extracted from 8 g sieved soil (2 mm) using the DNAeasy PowerMax Soil Kit (Qiagen, Hilden, Germany) according to the manufacturer´s protocol. PCR amplification of the V3-V4 region of the small-subunit (16S) of prokaryotes (i.e., bacteria and archaea) and the ribosomal internal transcribed spacer region (ITS2) of fungi was performed with 1 ng of template DNA using PCR primers and conditions as previously described (Frey et al., 2016). PCRs were run in triplicates, pooled and sent to the Genome Quebec Innovation Centre (Montreal, QC, Canada) for barcoding using the Fluidigm Access Array technology (Fluidigm) and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, USA). Quality filtering, clustering into operational taxonomic units (OTUs, 97% similarity cutoffs) and taxonomic assignment were performed as previously described (Resch et al., 2021).Taxonomic classification of nematode, prokaryotic and fungal sequences was conducted querying against the most recent versions of PR2 (v.4.11.1; Guillou et al., 2013), SILVA (v.132; Quast et al., 2013), and UNITE (v.8; Nilsson et al., 2019) reference sequence databases. Taxonomic assignment cutoffs were set to confidence rankings ≥ 0.8 (below ranked as unclassified). Prokaryotic OTUs assigned to mitochondria or chloroplasts as well as OTUs or ASVs assigned to other than Fungi or Nematoda were manually removed prior to data analysis. The three datasets were filtered to discard singletons and doubletons. Taxonomic abundance matrices were rarefied to the lowest number of sequences per community to achieve parity of the total number of reads between samples (Prokaryotes: 10,929 reads; Fungi: 18,337 reads; Nematodes: 6,662 reads). We calculated Shannon diversity and assessed community structures for soil nematodes, prokaryotes and fungi based on their relative abundances of ASV or OTU at the taxon level.

Collection of soil physical and chemical properties
We randomly collected one undisturbed soil core (5 cm diameter, 12 cm depth) per 4-m2 subplot using a steel cylinder that fit into the soil corer. The cylinders were capped to avoid disturbance during transport and used to measure field capacity, rock content and fine earth density as previously described (Resch et al., 2021). We randomly collected another three soil cores (5 cm diameter, 12 cm depths) in each 4-m2 subplot to determine soil chemical properties. The cores were pooled, dried at 60 °C for 48 h and passed through a 2 mm sieve. We measured soil pH (CaCl2) on dried samples, total nitrogen (N) and organic carbon (C) concentration on dried and fine-ground samples (≤ 0.5 mm; for details see Resch et al., 2021). We calculated total N and organic C pools after correcting its concentration for soil depth, rock content and fine earth density.

bacteria

display_name: bacteria

biodiversity

display_name: biodiversity

fungi

display_name: fungi

grassland

display_name: grassland

nematodes

display_name: nematodes

plants

display_name: plants

restoration

display_name: restoration

soil

display_name: soil

soil-biodiversity

display_name: soil-biodiversity

soil-biology

display_name: soil-biology

soil-chemistry

display_name: soil-chemistry

topsoil-removal

display_name: topsoil-removal

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Long-term recovery of above-and belowground interactions in restored grasslands


en: snow snow-instability avalanche avalanche-forecasting avalanche-danger danger-level

en: Field observations of snow instabilities

en: Read-me file

en: This read-me file contains the descriptions of the variables.

en:
This data set includes 589 snow profile observations including a rutschblock test, observations of signs of instability and an assessment of the local avalanche danger level, mainly recorded in the region of Davos (eastern Swiss Alps) during the winter seasons 2001-2002 to 2018-2019.

These data were analyzed and results published by Schweizer et al. (2021). They characterized the avalanche danger levels based on signs of instability (whumpfs, shooting cracks, recent avalanches), snow stability class and new snow height.

The data are provided in a csv file (589 records); the variables are described in the corresponding read-me file.

These data are the basis of the following publication: Schweizer, J., Mitterer, C., Reuter, B., and Techel, F.: Avalanche danger level characteristics from field observations of snow instability, Cryosphere, 15, 3293-3315, https://doi.org/10.5194/tc-15-3293-2021, 2021.

 Acknowlegements
Many of the data were recorded by SLF observers and staff members, among those Roland Meister, Stephan Harvey, Lukas Dürr, Marcia Phillips, Christine Pielmeier and Thomas Stucki. Their contribution is gratefully acknowledged.

avalanche

display_name: avalanche

avalanche-danger

display_name: avalanche-danger

avalanche-forecasting

display_name: avalanche-forecasting

danger-level

display_name: danger-level

snow

display_name: snow

snow-instability

display_name: snow-instability


maintainer: James W. Kirchner

en: tracer chloride catchment plynlimon precipitation streamflow deuterium stable-water-isotopes

en: Data Set Documentation

en: This file contains a documentation of the data sets, including references to other helpful documentations.

en: Weekly stable water isotopes

en: Data set of weekly stable water isotope data collected at Carreg Wen (precipitation) and Lower Hafren and Tanllwyth (streamflow).

en: 7-hourly stable water istopes

en: Data set of 7-hourly stable water isotope data measured at Carreg Wen (precipitation) and Upper Hafren (streamflow).

en: The data base contains timeseries of stable water isotopes in precipitation and streamflow at Plynlimon, Wales, UK. One data set contains weekly stable water isotope data from the Lower Hafren and Tanllwyth catchments, and the other data set contains 7-hourly stable water isotope data from Upper Hafren. Both data sets also include chloride concentrations in precipitation and streamflow.

catchment

display_name: catchment

chloride

display_name: chloride

deuterium

display_name: deuterium

plynlimon

display_name: plynlimon

precipitation

display_name: precipitation

stable-water-isotopes

display_name: stable-water-isotopes

streamflow

display_name: streamflow

tracer

display_name: tracer

en: Stable water isotopes in precipitation and streamflow at Plynlimon, Wales, UK


en: snow meteodat-gmbh gcos wagital snow-water-equivalent

en:
Total water reserves of the snow cover [mio m3] for Wägital catchment, Switzerland, for reference date April 1. Data is separated in 2 elevation zones 900m-1500m asl and 1500m-2300m asl. Time period 1943-2025, status 2025-04-30.

Funded currently or in the past by:

- Federal Office of Meteorology and Climatology MeteoSwiss in the context of GCOS Switzerland
- Meteodat GmbH
- Institute of Geography, University of Zurich
- WSL Institute for Snow and Avalanche Research SLF
- Institute of Geography, ETH Zurich (IAC ETH Zurich)
- AG Kraftwerk Wägital (AXPO and EWZ)

See also https://www.meteodat.ch/waegital.html

gcos

display_name: gcos

meteodat-gmbh

display_name: meteodat-gmbh

snow-water-equivalent

display_name: snow-water-equivalent

wagital

display_name: wagital

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Snow water equivalent for reference date April 1 for Wägital catchment, starting 1943


maintainer: Lisa Hülsmann

en: inventory-data tree-mortality tree-growth forest-reserves empirical-mortality-models

en: Calibration data

en:
A set of three consecutive inventories was used to generate records for the calibration of mortality models based on trees that were alive in the first and second inventory and either dead or alive in the third inventory.

 Meta data
Reserve: Name of the forest reserve

Plot: Permanent plot number

 Tree data
Species: Latin species name (or species group, cf. _Quercus_ spp.)

y: Status of the tree with 0 = alive and 1 = dead

dt: Length of the mortality period (years)

DBH: Diameter at breast height (mm) of the second inventory

relBAI: Annual relative basal area increment (-) calculated based on the first and the second DBH measurement as the compound annual growth rate of the trees basal area

 Stand data
_All stand variables were calculated for the second inventory._

mDBH: Mean diameter at breast height (mm)

iqrDBH: Interquartile range of diameter at breast height (mm)

BA: Basal area per hectare (m2 ha-1)

N: Number of trees per hectare (ha-1)

 Climate data
_Both climate variables were calculated for the period between the second and the third inventory._

P: Mean annual precipitation sum (mm)

mT: Mean annual air temperature (°C)

en:
The dataset comprises > 90 000 records from inventories in 54 strict forest reserves in [Switzerland](https://www.wsl.ch/de/wald/biodiversitaet-naturschutz-urwald/naturwaldreservate.html) and [Lower Saxony / Germany](http://naturwaelder.de/) along a considerable environmental gradient. It was used to develop parsimonious, species-specific mortality models for 18 European tree species based on tree size and growth as well as additional covariates on stand structure and climate.

 Inventory data
Measurements had been conducted repeatedly on up to 14 permanent plots per reserve for up to 60 years with re-measurement intervals of 4 - 27 years. The permanent plots vary in size between 0.03 and 3.47 ha. The inventories provide diameter measurements at breast height (DBH) and information on the species and status (alive or dead) of trees with DBH ≥ 4 cm for Switzerland and ≥ 7 cm for Germany.

 Data selection
We excluded three permanent plots where at least 80 % of the trees died during an interval of 10 years, and mortality could be clearly assigned to a disturbance agent. Mortality in the remaining stands was rather low, with a mean annual mortality rate of 1.5 % and strong variation between plots from 0 to 6.5 % (assessed for trees of all species with DBH ≥ 7 cm).
We only used data from permanent plots with at least 20 trees per species to obtain reliable plot-level mortality rates even for species with low mortality rates (about 5 % during 10 years), and selected tree species occurring on at least 10 plots to cover sufficient ecological gradients. This led to a dataset of 197 permanent plots and 18 tree or shrub species: _Abies alba_ Mill., _Acer campestre_ L., _Acer pseudoplatanus_ L., _Alnus incana_ Moench., _Betula pendula_ Roth, _Carpinus betulus_ L., _Cornus mas_ L., _Corylus avellana_ L., _Fagus sylvatica_ L., _Fraxinus excelsior_ L., _Picea abies_ (L.) Karst, _Pinus mugo_ Turra, _Pinus sylvestris_ L., _Quercus pubescens_ Willd., _Quercus_ spp. (_Q. petraea_ Liebl. and _Q. robur_ L.; not properly differentiated in the Swiss inventories), _Sorbus aria_ Crantz, _Tilia cordata_ Mill. and _Ulmus glabra_ Huds..

 Predictors of tree mortality
We considered tree size and growth as key indicators for mortality risk. Radial stem growth between the first and second inventory and DBH at the second inventory were used to predict tree status (alive or dead) at the third inventory. To this end, the annual relative basal area increment (relBAI) was calculated as the compound annual growth rate of the trees basal area. Additional covariates on stand structure and climate comprise mean annual precipitation sum (P), mean annual air temperature (mT), the mean and the interquartile range of DBH (mDBH, iqrDBH), basal area (BA) and the number of trees (N) per hectare.

 Further information
For further information, refer to Hülsmann _et al_. (in press) How to kill a tree – Empirical mortality models for eighteen species and their performance in a dynamic forest model. _Ecological Applications_.

empirical-mortality-models

display_name: empirical-mortality-models

forest-reserves

display_name: forest-reserves

inventory-data

display_name: inventory-data

tree-growth

display_name: tree-growth

tree-mortality

display_name: tree-mortality

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Calibration data for empirical mortality models of 18 European tree species


en: policy-action climate-change visualization landscape-change scenario

en: Entremont subtitles DE

en:
Scenarios of landscape change under climate change in the Swiss mountains.
Trailer in German with written subtitles.

en: Seeland subtitles FR

en:
Scenarios of landscape change under climate change in the Swiss lowlands.
Trailer in French with subtitles.

en: Seeland subtitles DE

en:
Scenarios of landscape change under climate change in the Swiss lowlands.
Trailer in German with subtitles.

en: Entremon subtitles FR

en: Scenarios of landscape change under climate change in the Swiss mountains. Trailer in French with subtitles.

en:
Short videos showing scenarios of potential landscape development in a 4°C warmer climate for a Swiss mountain region and a region on the Swiss Plateau. The videos are in German or French with subtitles.
The videos' key message is: Climate change will have an impact on the Swiss landscapes. However, according to the strategy chosen to adapt to climate change, society and politics will also have a strong influence on the future landscapes and the services they will provide. If no action is taken to adapt to climate change today, then society will have to react in a hurry at a later point in time. This can often result in resource-intensive technical solutions. Conversely, if society takes action in an anticipatory way already today, nature-based solutions can be implemented more successfully and humans can benefit more from the landscape services..
These short videos are teasers that should make the viewers curious to visit the panorama pictures (https://viergrad.envidat.ch/).

climate-change

display_name: climate-change

landscape-change

display_name: landscape-change

policy-action

display_name: policy-action

scenario

display_name: scenario

visualization

display_name: visualization

en: Teaser videos Swiss landscapes under climate change


maintainer: Yael Frischholz

en: photovoltaic alpine snow-transport preferential-deposition renewable-energy

en: Browse simulation files

en:
This file contains the snowBedFoam simulations carried out to produce the results presented in: _article not published yet_.
 Content
 1. /simulations
Groups all simulations folders organised by parameter (azimuth, groupsize, height, interspace) and by type of experiment (single_ref, group_ref).
 2. /simulations/[parameter]/
For each parameter multiple simulations were carried out. Each simulation folder follows the same naming systematic:
`helioplant_n#_h#_ARL#_BL#_az#_windDir#`
- n: number of Helioplant units
- h: height-above-surface
- sp: regular distance between the units
- ARL: additional refinement level
- BL: boundary layer first cell height
- windDir: wind direction
- stag: staggered arangement (suffix)
Here is an example of a folder content for a specific parameter
(simulations/azimuth/):
- `helioplant_n9_h07_sp10_ARL45_BL0015_az30_windDir5`: following the naming systematic this folder corresponds to a simulation with 9 aligned Helioplant units with 0.7m of height-above-surface, an inter-unit distance of 10m an azimuth of 30° and a wind direction of 5°.
 3. /simulations/[parameter]/[helioplant_n#_h#_ARL#_BL#_az#_windDir#]
Each simulation folder contains multiple sub-folders (0/, 100/, 300/, constant/ etc.) and files that define the experiment. For each simulation, the files used in the processing [scripts] are the following:
- 0/Cx: contains the x coordinates of sampling grid cells and of the Helioplants structures.
- 0/Cy: contains the y coordinates of sampling grid cells and of the Helioplants structures.
- 300/kinematicCloud-massCheckPatterns: contains the snow mass distribution values [kg/m2] for each grid cell.

[scripts]: https://github.com/frischwood/snowbed-helio.git

en:
This dataset groups numerical simulation outputs and validation measurement data produced in the context of the following [publication]: _not published yet_
The snow transport model [snowBedFoam] was used to analyse snow deposition around a specific type of Alpine PV structures named HELIOPLANT®.
The results of a sensitivity analysis of multiple key parameters that govern the spatial organisation of these structures are provided here. Measurements of snow distribution taken from the test-site of the [Gondosolar] project, are provided too.

To reproduce the results of the aforementioned publication, follow the instructions on this [repository].
[publication]: https://
[snowBedFoam]: https://www.doi.org/10.16904/envidat.223
[Gondosolar]: https://www.gondosolar.ch
[repository]: https://github.com/frischwood/snowbed-helio.git

alpine

display_name: alpine

photovoltaic

display_name: photovoltaic

preferential-deposition

display_name: preferential-deposition

renewable-energy

display_name: renewable-energy

snow-transport

display_name: snow-transport

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Drifting and blowing snow distribution around structures for Alpine PV applications


weather-station-davos-wolfgang

maintainer: Jörg Wieder

title_for_slug: weather-station-davos-wolfgang

en: weather temperature pressure raclets relative-humidity

en: Weather Station Davos Wolfgang

en: The data file contains date and time (YYYY-MM-DD hh:mm:ss) in UTC, temperature (°C), relative humidity (%), pressure (hPa) at 10 m above ground and above sea level. The data was averaged over 10 minutes.

en: The dataset contains weather parameters measured at Davos Wolfgang (LON: 9.853594, LAT: 46.835577).

pressure

display_name: pressure

raclets

display_name: raclets

relative-humidity

display_name: relative-humidity

temperature

display_name: temperature

weather

display_name: weather

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: population-genetics simple-sequence-repeats multilocus-genotypes drosophila-suzukii trichopria-drosophilae switzerland nuclear-microsatellite-markers biological-control

en: Multilocus genotypes (biallelic coding for 21 nuclear microsatellites) of Trichopria drosophilae described in Gugerli et al. Agrarforschung Schweiz 2019. Missing data denoted as '999'. Population codes (PopNo) are the following: 1, Vezia; 3, Contone ; 5, Davesco; 6, Corteglia; 7, Mezzana; 8, Stabio; 9, Gordola; 10, Sementina; 12, Brusata di Novazzano; 14, Monteggio; 16, Giubiasco; 17, ComoBP; 18, VD; 19, Weil_D; 20, Dossenheim; 21, BioPlanet_Como. Coordinates (CoordCH_E, CoordCH_N) refer to the Swiss coordinates system CH1903.

en: Table comprising all pertinent information for multiplex PCRs of species-specific nuclear microsatellite makers for Trichopria drosophilae, comprising all 21 newly developed markers, details on full sequences with GenBank accession numbers, primer sequences (including labeling and pig-tails), and repeat motives. PCRs with respective annealing temperatures (AnnealingTemp) refer to Type-It Multiplex PCR Kit (Qiagen, Hilden, Germany).

en:
 Nuclear microsatellite markers and genotype data for _Trichopria ddrosophilae_

This data set comprises (i) the characteristics of a set of 21 species-specific nuclear microsatellites for PCR amplification in _Trichopria drosophilae_ (ii) and genotype data for samples collected in southern Switzerland (Canton of Ticino), with few reference samples from Canton of Vaud, southern Germany, and northern Italy (lab-reared population).
Markers were developed by Ecogenics GmbH, Balgach (Switzerland), using MiSeq Nano 2x250 v2 format (on a mix of 10 individuals). Multiplex PCR assays for multilocus genotyping were established by Ecological Genetics (WSL Birmensdorf), and population genetic analyses are found in Gugerli et al., Agrarforschung Schweiz 2019.

biological-control

display_name: biological-control

drosophila-suzukii

display_name: drosophila-suzukii

multilocus-genotypes

display_name: multilocus-genotypes

nuclear-microsatellite-markers

display_name: nuclear-microsatellite-markers

population-genetics

display_name: population-genetics

simple-sequence-repeats

display_name: simple-sequence-repeats

switzerland

display_name: switzerland

trichopria-drosophilae

display_name: trichopria-drosophilae

en: Nuclear microsatellite markers for Trichopria drosophilae, parasitoid wasp on Drosophila suzukii


maintainer: Stephan Zimmermann

en: potassium biogeochemical-cycling calcium fagus-orientalis-lipsky magnesium

en: Concentrations of Ca, Mg, K, and Na in throughfall, litterflow and soil solution of a Hyrcanian forst in Northern Iran

en:
Throughfall, litterflow and soil solution were sampled during one whole year under five Oriental beech trees in a mixed Hyrcanian beech forest. The amounts of Ca2+, Mg2+, K+ and Na+ in these fluxes were calculated based on their concentrations and the sampled volumes, and subsequently compared with the respective fluxes in the rainfall and soil solution of an adjacent forest gap.
In addition six soil profiles, one close to every single tree and one in the forest gap, were analyzed for pH, CaCO3, organic matter and texture.

biogeochemical-cycling

display_name: biogeochemical-cycling

calcium

display_name: calcium

fagus-orientalis-lipsky

display_name: fagus-orientalis-lipsky

magnesium

display_name: magnesium

potassium

display_name: potassium

en: Base cation dynamics in an Oriental beech forest


en: dry-snow-avalanche avalanche climate-change snow-instability climate-projections snow wet-snow-avalanche snow-stratigraphy

en: Projections of avalanche activity

en: contains one file per IMIS station that indicates the daily probability for the occurrence of dry- or wet-snow avalanches in the vicinity of the respective station for each day during the time period 1.12.1981-31.05.2099 (months December to May) and all climate model chains and RCP scenarios.

en: Climate scenarios .smet

en: contains one .smet file per combination of station, climate model chain and RCP scenario. Each .smet file contains the downscaled meteorological data (time span 1.9.1981-31.8.2099) that was used to drive the SNOWPACK simulations.

en: SNOWPACK settings

en: contains .ini and .sno file indicating the settings used to drive SNOWPACK with the climate scenarios

en:
This data set includes 21st century projections of dry- and wet-snow avalanche activity for seven sites in the Swiss Alps as well as the downscaled climate scenarios and SNOWPACK configuration files used to produce these projections. The methods used to produce these data are described in the research article:
Mayer, S., Hendrick, M., Michel, A., Richter, B., Schweizer, J., Wernli, H., and van Herwijnen, A.: Changes in snow avalanche activity in response to climate warming in the Swiss Alps, EGUsphere, 2024, 1-32, https://doi.org/10.5194/egusphere-2024-1026, 2024.
We used downscaled climate projections to drive the snow cover model SNOWPACK and evaluated future dry- and wet-snow avalanche occurrences in the vicinity of seven automatic weather stations from the IMIS network using machine learning models trained with observed records of avalanche activity. Projections are available for three different emission scenarios (Representative Concentration Pathways, RCP2.6, RCP4.5 and RCP8.5) and eight climate model chains from the CH2018 ensemble. The output of the model chain is given by a daily probability for dry- or wet-snow avalanche occurrences. These probabilities can then be used to classify a day as a dry- and wet-snow avalanche day (AvD) or non-avalanche day.

avalanche

display_name: avalanche

climate-change

display_name: climate-change

climate-projections

display_name: climate-projections

dry-snow-avalanche

display_name: dry-snow-avalanche

snow

display_name: snow

snow-instability

display_name: snow-instability

snow-stratigraphy

display_name: snow-stratigraphy

wet-snow-avalanche

display_name: wet-snow-avalanche

educ

en: Education, culture and sport


en: source-code snowpack snow-modelling snowdrift avalanche

en:
This dataset includes the FORTRAN code of the FSM2trans model version used in the paper: Quéno et al., Snow redistribution in an intermediate-complexity snow hydrology modelling framework, The Cryosphere, 2024.
The FSM2trans code is derived from the FSM2 model (Essery et al., 2015) and its variant FSM2oshd (Mott et al., 2023). In this model, we implemented and adapted the snowdrift model SnowTran-3D (Liston et al., 2007) and the avalanching model SnowSlide (Bernhardt and Schulz, 2010).
This dataset does not include the processing scripts to prepare meteorological input data for the model, provided as bin files.

snow-modelling

display_name: snow-modelling

snowdrift

display_name: snowdrift

snowpack

display_name: snowpack

source-code

display_name: source-code

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: FSM2trans code


maintainer: Markus Schlegel

en: environmental-dna spore-dispersal metabarcoding monitoring air-sampling

en: Data files and analysis scripts (Version 1)

en: This ZIP archive contains the data and source code necessary to reproduce the analyses for the manuscript "A case study on the application of spore sampling for the monitoring of fungi". Please refer to README.pdf inside the archive for more information.

en: Data files and analysis scripts (Version 2)

en: This ZIP archive contains the data and source code necessary to reproduce the analyses for the manuscript "A case study on the application of spore sampling for the monitoring of macrofungi". Please refer to README.pdf inside the archive for more information.

en:
Resources associated with the manuscript *A case study on the application of spore sampling for the monitoring of macrofungi* ([Schlegel et al. 2024](https://doi.org/10.1111/1755-0998.13941)).
Airborne environmental DNA (eDNA) monitoring of fungi was evaluated on a species-rich grassland site. Extensive fruiting body surveys yielded 29 waxcap and clavarioid species, 19 of which were also detectable in air eDNA. The analysis indicates that spores of locally occurring fruiting bodies were detected, in addition to a large diversity of common fungal species, while rare and threatened species were under-represented in the air.
*Version 1* of the dataset was submitted during the review phase. *Version 2* contains minor changes and clarifications, and is up to date with the [published supplement](https://onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1111%2F1755-0998.13941&file=men13941-sup-0001-AppendixS1.pdf) of the study.
The contents of the ZIP archive:
* analysis scripts in [R-Markdown](https://rmarkdown.rstudio.com) format, including the rendered PDF output with figures and tables (*analysis* directory)
* eDNA sample metadata (*amplicon_meta*) and results of the amplicon clustering (*amplicon_data*) and the source code of the pipeline (*amplicon_pipeline*)
* positions of all fruiting body groups found in the surveys (3838 GPS points) (*surveys*)
* positions of the spore traps, taxonomy of studied grassland fungi and red-list species, and many more resources
Please refer to `README.pdf` inside the archive for a complete description of the file structure and information on how to reproduce the analyses.

air-sampling

display_name: air-sampling

environmental-dna

display_name: environmental-dna

metabarcoding

display_name: metabarcoding

monitoring

display_name: monitoring

spore-dispersal

display_name: spore-dispersal

en: Supporting information for case study on the application of spore sampling for the monitoring of macrofungi


maintainer: Esther R. Frei

en: seedling-recruitment treeline climate-change stillberg forest larix-decidua g-tree swiss-alps picea-abies

en: climate data G-TREE experiment, Davos, Switzerland

en:
 Background information
Climate change-induced range expansion of treeline populations depends on their successful recruitment, which requires dispersal of viable seeds followed by successful establishment of individual propagules. The Global Treeline Range Expansion Experiment (G-TREE) is a global initiative involving researchers from Europe, North America, Australia and New Zealand (Brown et al., 2013). At 15 alpine and Arctic treeline sites worldwide the mechanisms determining the elevational and latitudinal distribution of tree populations are studied using a standardized experimental approach. In summer 2013, a multifactorial seedling recruitment experiment has been established at the Stillberg ecological treeline research site. The aim of this experiment, is to quantify the effect of multiple abiotic and biotic drivers on emergence, survival, and growth of *Larix decidua* and *Picea abies* seedlings in replicated plots along an elevation gradient with three sites below (1930 m a.s.l.), at (2090 m a.s.l.), and above treeline (2410 m a.s.l.; Frei et al., 2018). All plots have been surveyed annually to count seedlings and to measure their total height. Additional environmental factors, such as soil temperature, have been recorded.

 Experimental design
The Stillberg research area is located in the Eastern Swiss Alps near Davos, Switzerland. The site has been used for several long-term monitoring as well as experimental studies for the last four decades. Our G-TREE experiment consists of a lowest site located in a subalpine Larch-Spruce forest (*Larici-Picetum*) dominated by *Larix decidua* and *Picea abies* (1930 m a.s.l.), a transition zone site dominated by alpine shrubs (2100 m a.s.l.), and an uppermost site in an alpine meadow with some dwarf shrubs (2390 m a.s.l.). The three experimental sites were set up following the standard protocol of the global G-TREE initiative (Brown et al., 2013). In a split-plot design, 20 plots (224 cm × 45 cm) were established at each site, which were randomly assigned to the 2 × 2 treatment combinations of the main factors seeding and scarification (i.e. seeding and scarification, seeding only, scarification only, and full control), resulting in five replications per main treatment combination. Each plot was divided into 16 split-plots (22.5 cm × 28 cm), to which treatment combinations of four additional two-level factors species (larch and spruce), provenance (low- and high-elevation), herbivore exclosure (with and without exclosure), and seeding year (2013, 2014) were randomly assigned, which resulted in a total of 960 split-plots (Details see Frei et al. 2018).

 Data description
All plots have been surveyed annually to count seedlings and to measure their total height. Seedling height was assessed with a hand ruler as the total length from the original emerging point to the apical meristem (Details see Frei et al. 2018). Additionally, soil temperature at each site, has been continuously recorded since 2013. Here, we present data from eight years (2013–2021).

forest

display_name: forest

g-tree

display_name: g-tree

larix-decidua

display_name: larix-decidua

picea-abies

display_name: picea-abies

seedling-recruitment

display_name: seedling-recruitment

stillberg

display_name: stillberg

swiss-alps

display_name: swiss-alps

treeline

display_name: treeline

en: G-TREE: Global Treeline Range Expansion Experiment Davos, Switzerland


maintainer: Florian Lustenberger

en: hydrology estimation-methods decision-making engineering flood

en:
(English version below)
Ziel dieser Faktenblätter ist es Informationen zu den Schätzmethoden, Hinweise zur Parametrisierung und eine grobe Einschätzung der Güte der Resultate in übersichtlicher Form bereitzustellen. Ein zeitaufwändiges Zusammensuchen dieser Informationen aus unterschiedlichen Quellen entfällt daher weitgehend. Die Bearbeitenden sollen damit in der Lage sein, sich innerhalb weniger Minuten die wichtigsten Hintergrundinformationen zu jeder der vorgestellten Methoden in Erinnerung zu rufen. Der Leitfaden unterstützt bei der Plausibilisierung und bei der Mittelung der Ergebnisse der einzelnen Schätzmethoden zu einem repräsentativen Endergebnis. Vorausgesetzt wird Grundwissen und Erfahrung in der Thematik.
Der Leitfaden führt die Fachperson anhand eines Entscheidungsbaums in acht Schritten durch den Arbeitsablauf und unterstützt mit einem Fragenkatalog bei der Plausibilisierung der Ergebnisse.
Auf den Faktenblättern sind für jede Schätzmethode alle relevanten Informationen stichwortartig und grafisch übersichtlich auf einer DIN-A4 Seite zusammengefasst. Jedes Faktenblatt ist einheitlich gegliedert.
The aim of these fact sheets is to provide information on the flood estimation methods, notes on their parameterization and a rough assessment of the quality of the results in a clear form. A time-consuming research for this information from different sources is therefore largely eliminated. The users should be able to recall the most important background information on each of the methods presented within a few minutes. The guide provides support in checking plausibility and averaging the results of the individual estimation methods to produce a representative final result. Basic knowledge and experience in the subject are assumed.
The guide leads the expert through the workflow in eight steps using a decision tree and supports the plausibility check of the results with a list of questions.
On the fact sheets, all relevant information for each estimation method is summarized with key words and graphics on one DIN A4 page. Each fact sheet has a standardized structure.

decision-making

display_name: decision-making

engineering

display_name: engineering

estimation-methods

display_name: estimation-methods

flood

display_name: flood

hydrology

display_name: hydrology

educ

en: Education, culture and sport

en: Faktenblätter und Leitfaden für Hochwasserschätzmethoden in der Praxis


maintainer: Francesco Comola

en: saltation sand cohesion wind snow sediment

en: Output of the model simulations

en: Model results on granular splash and saltation process of sand and snow particles

en:
The wind-driven saltation of sand and snow shapes dunes and ripples, generates dust emission, and erodes the surface of the Antarctic ice sheet. Here, we use a model based on the discrete element method to simulate grain-flow interactions and study the effect of particle cohesion on saltation dynamics.

The data contains the model output of granular splash simulations and saltation simulations. Granular splash, the main particle entrainment process in saltation, occurs upon impact of saltating particles with the granular bed. We performed Monte Carlo simulations of granular splash for loose sand grains and for cohesive ice grains. The analysis indicate that different values of cohesion have significant effects not on the number of splashed grains, on the ejection velocity, and the rebound velocity.

In our saltation simulations, we trigger particle movement with a single splash event at the inlet section section and let the system evolve until steady state. Our results show that saltation over cohesive surfaces is difficult to initiate but easy to sustain at low wind speed. The occurrence of transport thus depends on the history of the wind speed, a phenomenon known as hysteresis. We also show that saltation over cohesive surfaces presents higher mass fluxes but requires longer distances to saturate, which increases the size of the smallest stable surface ripples. Our model results have implications for large-scale aeolian processes on Earth and Titan, where sand grains are thought to be very cohesive.

cohesion

display_name: cohesion

saltation

display_name: saltation

sand

display_name: sand

sediment

display_name: sediment

snow

display_name: snow

wind

display_name: wind

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Saltation of cohesive granular materials


maintainer: Virginie Marques

en: edna teleo marseille fish-composition mediterraneaen marine

en: Data access

en: Please use cyberduck to download for the moment

en:
Description: Fish environmental DNA data set collected in 2022 in the Calanques National Park
The eDNA samples were collected in 2022 in two locations (Moyades, M−FPA and “Impérial du large”, I-LPA), during the winter (January- February), the summer (June to August)and fall (mid-September to November) seasons, with the sampling dates depending on the weather conditions. For the M−FPA, samples were collected between Moyades island and Riou island, while for the I-LPA, they were collected on the south side of the “Impérial du large” island. To account for the existing bathymetry, in the M−FPA the samples were taken at two sampling sites with depths of 20 and 40 m, while in the I-LPA they were taken at two sites with depths of 20 and 80 m.
At each site, in-situ filtration of seawater was performed using a double-head submersible pump (Subspace, Geneva, Switzerland; nominal flow of ca. 1 L/min) strapped to an underwater scooter with 2 VigiDNA 0.20 µm filtration capsules (SPYGEN, le Bourget du Lac, France), along with disposable sterile tubing. The samples were collected along two horizontal transects (up to 400 m in length) during each closed-circuit rebreather dive, enabling the filtration of a water volume of 15 L/filter per depth, as close as possible to the substrate. Two filter replicates were collected by two divers at each sampling site, except in two cases where bad weather conditions or logistical issues meant that only one replicate was sampled.
After the filtration, the remaining seawater was emptied from the capsule back on the boat and replaced by a 80 mL CL1 conservation buffer (SPYGEN, le Bourget du Lac, France). To prevent any contamination, a strict protocol was followed during the entire process, requiring disposable gloves and single-use filtration equipment. Finally, the samples were stored at room temperature. We followed a strict contamination control protocol in both field and laboratory stages. Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

edna

display_name: edna

fish-composition

display_name: fish-composition

marine

display_name: marine

marseille

display_name: marseille

mediterraneaen

display_name: mediterraneaen

teleo

display_name: teleo

en: Environmental DNA Marine France Calanques 2022