en: mediterraneaen edna fish-composition marine teleo marseille

en: Data access

en:
Description: Fish environmental DNA data set collected in 2021 in the Calanques National Park
The eDNA samples were collected in 2021 in two locations (Moyades, M−FPA and “Impérial du large”, I-LPA), during the summer (June to August)and fall (mid-September to November) seasons, with the sampling dates depending on the weather conditions. For the M−FPA, samples were collected between Moyades island and Riou island, while for the I-LPA, they were collected on the south side of the “Impérial du large” island. To take into account the existing bathymetry, in the M−FPA the samples were taken at two sampling sites with depths of 20 and 40 m, while in the I-LPA they were taken at two sites with depths of 20 and 80 m.
At each site, in-situ filtration of seawater was performed using a double-head submersible pump (Subspace, Geneva, Switzerland; nominal flow of ca. 1 L/min) strapped to an underwater scooter with 2 VigiDNA 0.20 µm filtration capsules (SPYGEN, le Bourget du Lac, France), along with disposable sterile tubing. The samples were collected along two horizontal transects (up to 400 m in length) during each closed-circuit rebreather dive, enabling the filtration of a water volume of 15 L/filter per depth, as close as possible to the substrate. Two filter replicates were collected by two divers at each sampling site, except in two cases where bad weather conditions or logistical issues meant that only one replicate was sampled.
After the filtration, the remaining seawater was emptied from the capsule back on the boat and replaced by a 80 mL CL1 conservation buffer (SPYGEN, le Bourget du Lac, France). To prevent any contamination, a strict protocol was followed during the entire process, requiring disposable gloves and single-use filtration equipment. Finally, the samples were stored at room temperature. We followed a strict contamination control protocol in both field and laboratory stages. Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

edna

display_name: edna

fish-composition

display_name: fish-composition

marine

display_name: marine

marseille

display_name: marseille

mediterraneaen

display_name: mediterraneaen

teleo

display_name: teleo

en: Environmental DNA Marine France Calanques 2021


maintainer: Michael Lehning

state: active

type: dataset

en: Description

media_type: application/pdf

en: Full Data Description

format: PDF

mimetype: application/pdf

en: Data Source

en: Hourly Gridded Wind Power Time Series

format: SERVICE

en: Coordinates of Grid Points

en:
This dataset consist of simulated hourly power production from an Enercon E82 Turbine at 100 m hub-height. It describes the hourly power output a 1MW turbine would produce in each 0.01° grid cell for the years 2016 and 2017.

100 m wind speed data was taken from the COSMO-1 model (Consortium for Small-scale Modeling 2017), which has a 0.01° horizontal resolution. The domain covered is the whole of Switzerland, with the exclusion of lakes. As such, the number of 0.01◦ pixels within Switzerland amounts to 48657.
Conversion to power output was done based on the power curve of the Enercon E82 Turbine. As power output is lower at altitude due to lower air density, we corrected for this effect as described in (Kruyt et al. 2017).

Please cite the following paper in connection with the dataset:

Paper Citation:
 > _Bert Kruyt, Jérôme Dujardin, and Michael Lehning: Improvement of wind power assessment in complex terrain: The case of COSMO-1 in the Swiss Alps, Front. Energy Res., [doi:10.3389/fenrg.2018.00102] (https://doi.org/10.3389/fenrg.2018.00102)_

mountain-wind-potential

display_name: mountain-wind-potential

topography

display_name: topography

wind-energy

display_name: wind-energy

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Dataset on Cosmo-1 based Energy Potential in Swiss Alps


maintainer: Florian Lustenberger

en: hydrology engineering decision-making estimation-methods flood

en:
(English version below)
Ziel dieser Faktenblätter ist es Informationen zu den Schätzmethoden, Hinweise zur Parametrisierung und eine grobe Einschätzung der Güte der Resultate in übersichtlicher Form bereitzustellen. Ein zeitaufwändiges Zusammensuchen dieser Informationen aus unterschiedlichen Quellen entfällt daher weitgehend. Die Bearbeitenden sollen damit in der Lage sein, sich innerhalb weniger Minuten die wichtigsten Hintergrundinformationen zu jeder der vorgestellten Methoden in Erinnerung zu rufen. Der Leitfaden unterstützt bei der Plausibilisierung und bei der Mittelung der Ergebnisse der einzelnen Schätzmethoden zu einem repräsentativen Endergebnis. Vorausgesetzt wird Grundwissen und Erfahrung in der Thematik.
Der Leitfaden führt die Fachperson anhand eines Entscheidungsbaums in acht Schritten durch den Arbeitsablauf und unterstützt mit einem Fragenkatalog bei der Plausibilisierung der Ergebnisse.
Auf den Faktenblättern sind für jede Schätzmethode alle relevanten Informationen stichwortartig und grafisch übersichtlich auf einer DIN-A4 Seite zusammengefasst. Jedes Faktenblatt ist einheitlich gegliedert.
The aim of these fact sheets is to provide information on the flood estimation methods, notes on their parameterization and a rough assessment of the quality of the results in a clear form. A time-consuming research for this information from different sources is therefore largely eliminated. The users should be able to recall the most important background information on each of the methods presented within a few minutes. The guide provides support in checking plausibility and averaging the results of the individual estimation methods to produce a representative final result. Basic knowledge and experience in the subject are assumed.
The guide leads the expert through the workflow in eight steps using a decision tree and supports the plausibility check of the results with a list of questions.
On the fact sheets, all relevant information for each estimation method is summarized with key words and graphics on one DIN A4 page. Each fact sheet has a standardized structure.

decision-making

display_name: decision-making

engineering

display_name: engineering

estimation-methods

display_name: estimation-methods

flood

display_name: flood

hydrology

display_name: hydrology

en: Faktenblätter und Leitfaden für Hochwasserschätzmethoden in der Praxis


maintainer: EnviDat Support

en: wagital gcos snow-water-equivalent meteodat-gmbh snow

media_type: text/plain

format: TXT

en:
Total water reserves of the snow cover [mio m3] for Wägital catchment, Switzerland, for reference date April 1. Data is separated in 2 elevation zones 900m-1500m asl and 1500m-2300m asl. Time period 1943-2025, status 2025-04-30.

Funded currently or in the past by:

- Federal Office of Meteorology and Climatology MeteoSwiss in the context of GCOS Switzerland
- Meteodat GmbH
- Institute of Geography, University of Zurich
- WSL Institute for Snow and Avalanche Research SLF
- Institute of Geography, ETH Zurich (IAC ETH Zurich)
- AG Kraftwerk Wägital (AXPO and EWZ)

See also https://www.meteodat.ch/waegital.html

gcos

display_name: gcos

meteodat-gmbh

display_name: meteodat-gmbh

snow

display_name: snow

snow-water-equivalent

display_name: snow-water-equivalent

wagital

display_name: wagital

en: Snow water equivalent for reference date April 1 for Wägital catchment, starting 1943


soil-property-maps-for-the-swiss-forest

title_for_slug: soil-property-maps-for-the-swiss-forest

en: soil-texture forest dsm soil-properties soil-ph soc soil soil-depth switzerland

media_type: application/zip

format: ZIP

format: XLS

en:
We used 2071 forest soil profiles to model a wide range of soil properties for the forested area of Switzerland. The spatial prediction is based on the principle of «digital soil mapping». This involves linking soil profiles with soil forming factors using statistical or machine learning methods.

A quantile regression forest (QRF) approach was applied to predict the following soil properties at six depth ranges: clay, gravel, sand, fine earth density, SOC. The depth ranges correspond to the standard depths of the [GlobalSoilMap.Net](https://www.isric.org/) specification: 0–5, 5–15, 15–30, 30–60, 60–100 and 100–200 cm. In addition, the total soil depth down to a non-root-permeable layer or solid rock soil thick was predicted. To quantify the uncertainty for each predicted pixel, the upper and lower limit of the 90% prediction interval derived from QRF was calculated. More details on the methods and results are described in Baltensweiler et al. 2021 and Baltensweiler et al 2022.

The soil property maps, and the uncertainty maps are provided as a GeoTIFF files at 25 m resolution. The excel file (xlsx) provides a short description of the raster layers.

**The soil and the uncertainty maps can be viewed in a simple web-GIS application available at:**
[www.wsl.ch/soilmaps](https://www.wsl.ch/soilmaps).

dsm

display_name: dsm

forest

display_name: forest

soc

display_name: soc

soil

display_name: soil

soil-depth

display_name: soil-depth

soil-ph

display_name: soil-ph

soil-properties

display_name: soil-properties

soil-texture

display_name: soil-texture

switzerland

display_name: switzerland

en: Soil property maps for the Swiss forest


maintainer: Chunhong Zhao

en: austin landscape land-use urban-morphology land-dynamics

en: Land use dynamics in Austin since 1992

en: The present dataset is part of the published scientific paper Zhao C, Weng Q, Hersperger A M. Characterizing the 3-D urban morphology transformation to understand urban-form dynamics: a case study of Austin, Texas, USA. Landscape and urban planning, 2020, 203:103881. The overall objective of this paper is to understand urban form dynamics in the Austin metropolitan area for the periods 2006–2011 and 2011–2016. The study also aims to understand to what extent the changes in the built environment (in terms of ‘efficient growth’ versus ‘inefficient growth’) from the 1990s to 2016 in the Austin metropolitan area corresponded with ‘compact and efficient growth’ planning policy documents. The UMT distribution can be found in the paper. The area of transitioning UMT was provided in Table 2 and Table 3 can be found in the Appendix of the paper. A protocol was developed to perform the content analysis of the strategic plans and gather the data. The detailed list of protocol items can be found in Appendix B of the paper. This study demonstrates the advantage of applying Lidar data to characterize 3-D urban morphology type (UMT) transition and understand its dynamics, which helps develop a comprehensive understanding of the urbanization process and provides a tool for planning intentions and policies evaluation on urban development over time. The UMT maps can be found in Appendix A of the paper. The Lidar point datasets and the 30 × 30 m National Land Cover Database (NLCD) are the two main data sources of UMT mapping. Lidar datasets were gathered from different projects that had been conducted and collected by state agencies and other organizations between 2007 and 2017. Table A1 in the appendix in the paper shows the accuracies and acquisition parameters of the Lidar projects from 2007 to 2017. Land use/cover dynamics in Austin metropolitan area dataset provides Land use/cover patterns in the years 1992, 2001, 2004, 2006, 2008, 2011, 2013, 2016 with a spatial resolution of 30 meters. Since NLCD 1992 used a different classification system for the urban land classes, we first reclassified the NLCD 1992 using a customized Arcpy package.

austin

display_name: austin

land-dynamics

display_name: land-dynamics

land-use

display_name: land-use

landscape

display_name: landscape

urban-morphology

display_name: urban-morphology

en: Land use/cover dynamics in Austin metropolitan area since 1992


maintainer: Camille Albouy

en: environmental-dna mitochondrial-dna actinopterygii atlantic-ocean barcoding 12s teleo-primers

media_type: text/csv

en: This file contains the metadata associated with each scientific survey

format: CSV

en:
Mitochondrial tree based on the 12s sequences obtained for altantic fish.
This data represent the maximum likelihood phylogenetic tree allowing to assess 1) the clustering of the different sequences generated in
this study and their closest sequences recovered through a MegaBLAST on GenBank, 2) the robustness of the clades and 3) the
phylogenetic dissimilarities through the branch length of the tree among the different sequences. This tree was built with IQtree2
using the best substitution model found by modelFinder. The robustness of the node was evaluated using 1000 ultra-fast bootstrap
(node information indicated on the right of the /) and SH-aLRT procedures (node information indicated on the left of the /), using a hillclimbing nearest neighbor interchange (NNI) search to reduce the risk of overestimating branch supports with ultra-fast Bootstrap
caused by too severe model violations.

en: This file contains the 12s mitochondrial sequences for the Atlantic fishes collected on a French scientific survey (Evhoe) for stock assessment.

en: This file contains the metadata associated with each 12 s mitochondrial sequence.

en: This file contains the Teleo Barcode for the Atlantic fishes collected during a French scientific survey (Evhoe) for stock assessment.

en:
The global biodiversity crisis driven by anthropogenic pressures significantly threatens marine ecosystems functioning. The rate of climate change and the impacts of anthropogenic pressures outpacing the capabilities of our observation tools, stresses the need to develop new methods to assess these rapid modifications. Environmental DNA (eDNA; DNA traces released by organisms) metabarcoding has emerged as a non-invasive method that has been widely developed over the last decade. Thanks to a large spatio-temporal coverage, high detection of rare species and its time and cost effectiveness, eDNA metabarcoding represents a promising biomonitoring tool. However, capturing fish diversity using eDNA requires a high-quality genetic reference database, which we are currently still lacking. For the South European Atlantic shelf area, we estimated that only 41% of the fish species present were recorded in the available eDNA reference databases. Improving reference databases can notably rely on opportunistic sampling enabling the reporting of sequences for new species. Therefore, the data provided here consists of barcoding 95 species of ray-finned and cartilaginous fishes over the 12S mitochondrial DNA gene. We generated 168 12S barcodes from fishes that were sampled in the Bay of Biscay (Northeast Atlantic, France) between 2017 and 2019. We also provided the “Teleo” barcode associated with a specific 12S region for each individual. In addition to the sequences, we provided for each individual the taxonomy, the details associated with the barcode (Genbank accession number, chromatograms), a photograph, as well as 5 ecomorphological measures and 11 life-history traits. These traits document several functions such as dispersion, diet, habitat use, and position in the food web. Furthermore, we provided the metadata of each sampling site (date, station, sampling hour, gear, latitude, longitude, depth) and environmental variables measured in situ (conductivity, salinity, water temperature, water density, air temperature).
This data set is highly valuable to improve the Northeast Atlantic eDNA genetic database, thus helping to better understand the effects of environmental forcing in the Bay of Biscay, a transition zone housing mixed assemblages of boreal, temperate and subtropical fish species susceptible to display variability in functional traits to adapt to changing conditions.

actinopterygii

display_name: actinopterygii

atlantic-ocean

display_name: atlantic-ocean

barcoding

display_name: barcoding

environmental-dna

display_name: environmental-dna

mitochondrial-dna

display_name: mitochondrial-dna

teleo-primers

display_name: teleo-primers

educ

en: Education, culture and sport

en: ATLFISHREF A 12S mitochondrial reference dataset for metabarcoding Atlantic Fishes frequently caught during scientific surveys in the Bay of Biscay


en: hazard-mapping avalanche snow satellite natural-hazard

en: SPOT6 Avalanche outlines 24 January 2018

en: Shapefile of the manually mapped avalanche outlines. Please only use this data together with the example key document provided with this dataset.

format: SHP

mimetype: application/zip

en:
Outlines of 18'737 avalanches mapped from SPOT6 satellite data over the Swiss Alps on 24 January 2018. The outlines have different attributes described in the data example key (ExampleKey_AvalMapping.pdf)

The generation of the data is described in:

Bühler, Y., E. D. Hafner, B. Zweifel, M. Zesiger, and H. Heisig (2019), Where are the avalanches? Rapid SPOT6 satellite data acquisition to map an extreme avalanche period over the Swiss Alps, The Cryosphere, 13(12), 3225-3238, doi:10.5194/tc-13-3225-2019.

Abstract.
Accurate and timely information on avalanche occurrence are key for avalanche warning, crisis management and avalanche documentation. Today such information is mainly available at isolated locations provided by observers in the field. The achieved reliability considering accuracy, completeness and reliability of the reported avalanche events is limited. In this study we present the spatial continuous mapping of a large avalanche period in January 2018 covering the majority of the Swiss Alps (12’500 km2).

We tested different satellite sensors available for rapid mapping during a first avalanche period. Based on these experiences, we tasked SPOT6/7 data for data acquisition to cover the second, much larger avalanche period. We manually mapped the outlines of 18’737 individual avalanche events, applying image enhancement techniques to analyze regions in cast shadow as well as brightly illuminated ones. The resulting dataset of mapped avalanche outlines, having a unique completeness and reliability, is evaluated to produce maps of avalanche occurrence and avalanche size. We validated the mapping of the avalanche outlines using photographs acquired from helicopters just after the avalanche period.

This study demonstrates the applicability of optical, very high spatial resolution satellite data to map an exceptional avalanche period with very high completeness, accuracy and reliability over a large region. The generated avalanche data is of great value to validate avalanche bulletins, complete existing avalanche databases and for research applications by enabling meaningful statistics on important avalanche parameters.

Koordinate System: CH1903+ LV95 LN02

avalanche

display_name: avalanche

hazard-mapping

display_name: hazard-mapping

natural-hazard

display_name: natural-hazard

satellite

display_name: satellite

snow

display_name: snow

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: african-manatee field-based-protocol threatened-species biodiversity-monitoring edna crispr-dx environmental-dna qpcr crispr-cas

en: File containing overview of site names and extract number (field-based or lab-based extraction). The extract_number_field_based corresponds to the identically called column in CRISPR_field_based_classifications.csv file in the data folder, as the extract_number_lab_based to the column in the file CRISPR_lab_based_classifications.csv file and the qPCR_Cp_2nd_derivative.csv file (also in the data folder). The file includes the GPS coordinates of the sampling location (transect start point).

en: Description of project and folders and files

en:
Folder containing the data files with Cp values (qPCR) and the CRISPR-Dx classifications. CRISPR_field_based_classifications.csv file contains the classifications per pool per extract (0: no detection, 1: detection) for the African manatee (Trichechus senegalensis).
CRISPR_lab_based_classifications.csv file contains the classifications per pool per extract (0: no detection, 1: detection).
qPCR_Cp_2nd_derivative.csv file contains the Cp value of the 8 replicates of each extract.

en:
Data associated to the publication "Rapid field-based detection of a threatened and elusive species with environmental DNA and CRISPR-Dx"

 Authors:

Flurin Leugger, Martina Lüthi, Michel Schmidlin, Zacharias Kontarakis and Loïc Pellissier

 Contact:

flurinleugger@gmail.com
loic.pellissier@usys.ethz.ch

 Project description:

We collected eDNA samples in the Conkouati-Douli National Park in the Republic of Congo in 2023 in collaboration with Beauval Nature and HELP Congo. We analyzed the samples on site in the national park using CRISPR-Dx assays to detect the African manatee (*Trichechus senegalensis*). Additionally, we transported the remaining samples (buffer) to Switzerland and used a high-sensitivity protocol with CRISPR-Dx assays and a qPCR assay to verify the field-based detections. The qPCR of Hunter et al. (2018) detects the genus manatee (Trichechus). See publication for more details (doi will be added after publication).

 Folders:

 lateral_flow_tests_images\:

Images of the lateral flow tests used to analyze the eDNA extracts in the national park. File names correspond to the site names. At each site, we took two filter replicates. We ran 8 PCRs per filter/extract and pooled two PCRs together, resulting in 4 CRISPR-Dx assays per extract. The EVE number on top of the tests indicates the environmental extract number we use to track the extracts in our data base. It corresponds to the extract_number_field_based in the metadata and data folder. The negative extraction control with the strongest "band" was placed right to the eDNA extract on each image (labelled hand written with NC x.y).

 metadata\:

File containing overview of site names and extract number (field-based or lab-based extraction). The extract_number_field_based corresponds to the identically called column in CRISPR_field_based_classifications.csv file, as the extract_number_lab_based to the column in the file CRISPR_lab_based_classifications.csv file and the qPCR_Cp_2nd_derivative.csv file. The file includes the GPS coordinates of the sampling location (transect start point).

 data\:

Folder containing the files with Cp values (qPCR) and the CRISPR-Dx classifications. CRISPR_field_based_classifications.csv file contains the classifications per pool per extract (0: no detection, 1: detection) for the African manatee (Trichechus senegalensis).
CRISPR_lab_based_classifications.csv file contains the classifications per pool per extract (0: no detection, 1: detection).
qPCR_Cp_2nd_derivative.csv file contains the Cp value of the 8 replicates of each extract.

african-manatee

display_name: african-manatee

biodiversity-monitoring

display_name: biodiversity-monitoring

crispr-cas

display_name: crispr-cas

crispr-dx

display_name: crispr-dx

edna

display_name: edna

field-based-protocol

display_name: field-based-protocol

qpcr

display_name: qpcr

threatened-species

display_name: threatened-species

en: Field-based eDNA analysis to detect the threatened and elusive African manatee


en: urban-transformations land-use-transformations strategic-spatial-planning strategic-projects land-use-change europe large-scale-urban-development-projects spatial-planning

en: QCA R script large-scale urban development projects Europe

en:
For the set up of this R script, we used the “QCA” (Duşa, 2019) and “SetMethods” (Oana and Schneider, 2018) R packages.

The following further resources were also used:
Dusa, A. (2019). QCA with R: A comprehensive resource. Springer: Berlin.
Schneider, C. Q., & Wagemann, C. (2012). Set-theoretic methods for the social sciences. A guide to qualitative comparative analysis. Cambridge: Cambridge University Press.
Thomann, E., Oana, I.-E., & Wittwer, S. (2018). Performing fuzzy- and crisp set QCA with R. A user-oriented beginner's guide. Retrieved from http://www.evathomann.com/links/qca-r-manual

en: QCA data set large-scale urban development projects

en: Please refer to the sections: 3. The data set lsUDPs: 3.1 Selection of cases and data collection; 3.2 Data management and operationalization in the Metadata for further details on this resource.

mimetype: text/plain

en:
Table of Content: 1. General context of the data set "lsUDPs" ; 2. Background and aims of the study using the data set lsUDPs; 3. The data set lsUDPs: 3.1 Selection of cases and data collection; 3.2 Data management and operationalisation

1. General context of the data set "lsUDPs"
The data set "lsUDPs" has been generated as part of the CONCUR research project (https://www.wsl.ch/en/projects/concur.html) led by Dr. Anna M. Hersperger and funded by the Swiss National Science Foundation (ERC TBS Consolidator Grant (ID: BSCGIO 157789) for the period 2016-2020. The CONCUR research project is interdisciplinary and aims to develop a scientific basis for adequately integrating spatial policies (in this case, strategic spatial plans) into quantitative land-change modelling approaches at the urban regional level. The first stage (2016-2017) of the CONCUR project focussed on 21 urban regions in Western Europe. The urban regions were selected through a multi-stage strategy for empirical research (see Hersperger, A. M., Grădinaru, S., Oliveira, E., Pagliarin, S., & Palka, G. (2019). Understanding strategic spatial planning to effectively guide development of urban regions. Cities, 94, 96–105. https://doi.org/10.1016/j.cities.2019.05.032 ).

2. Background and aims of the study using the data set lsUDPs
As part of the CONCUR project, a specific task was to examine the relationship between strategic spatial plans and the formulation and implementation (i.e. urban land change) of large-scale urban development projects in Western Europe.
Strategic urban projects are typically large-scale, prominent urban transformations implemented locally with the aim to stimulate urban growth, for instance in the form of urban renewals of deprived neighborhoods, waterfront renewals and transport infrastructures. While strategic urban projects are referred to in the literature with multiple terms, in the CONCOR project we call them large-scale urban development projects (lsUDPs).
Previous studies acknowledged both local and supra-local (or structural) factors impacting the context-specific implementation of lsUDPs. Local governance factors, such as institutional capacity, coordination among public and private actors and political leadership, intertwine with supra-local conditions, such as state re-scaling processes and devolution of state competencies in spatial planning, de-industrialisation and increasing social inequality. Hence, in implementing lsUDPs, multi-scalar factors act in combination.
Because the formulation and implementation of lsUDPs require multi-scalar coordination among coalitions of public and private actors over an extended period of time, they are generally linked to strategic spatial plans (SSPs). Strategic spatial plans convey collective visions and horizons of action negotiated among public and private actors at the local and/or regional level to steer future urban development, and can contain legally binding dispositions, but also indicative guidelines.
The key question remains as to what extent large-scale urban development projects and strategic spatial plans can be regarded as aligned. By alignment, or “concordance”, we mean that strategic projects are formulated and implemented as part of the strategic planning process (“high concordance”), or that the strategic role of projects is reconfirmed in (subsequent) strategic plans (“moderate concordance”). Lack of concordance is found when lsUDPs have been limitedly (or not at all) acknowledged in strategic spatial plans.
We assume that certain local and supra-local factors, characterising the development of the projects, foster (but not strictly “cause”) the degree of alignment between lsUPDs and SSPs. In this study, we empirically examine how, and to what extent, the concordance between 38 European large-scale urban development projects and strategic plans (outcome: CONCOR) has been enabled by five multi-scalar factors (or conditions): (i) the role of the national state (STATE), (ii) the role of (inter)national private actors (PRIVATE), (iii) the occurrence of supra-regional external events (EVENTS), (iv) the degree of transport connectivity (TRANSP), and (v) local resistance from civil society (RESIST). We adopted a (multi-data) case-based qualitative strategy for empirical research and applied the formalised procedure of within- and cross-case comparison offered by fuzzy-set Qualitative Comparative Analysis appropriate for the goal of this study. Based on set theory, QCA formally integrates contextual sensitivity to case specificities (within-case knowledge) with systematic comparative analysis (across-case knowledge).
The research question the data set has been created to reply to is the following: which conditions, and combinations of conditions, enable the concordance between large-scale urban development projects and strategic spatial plans?
The conditions (“independent variables”) considered are. STATE: the set of large-scale urban projects characterized by a high degree of state intervention and support in their formulation and implementation, PRIVATE: the set of large-scale urban projects characterized by a high degree of involvement of (inter)national private actors in their formulation and implementation, EVENTS: the set of large-scale strategic projects whose formulation and implementation have been strongly affected by unforeseen international events and/or global trends, TRANSP: the set of large-scale strategic projects with a high degree of road and/or transit connectivity, and RESIST: set of large-scale strategic projects whose realization has been characterized by resistances that have substantially delayed or modified the project implementation.
The outcome (“dependent variable”) under analysis is CONCOR: the set of large-scale urban projects having a high degree of concordance/alignment/integration with strategic spatial plans

3. The data set lsUDPs

   3.1 Selection of cases and data collection
To generate the current data set on large-scale urban development projects in European urban regions (data set "lsUDPs"), we identified 35 large-scale urban development projects in a sample of the 21 Western urban regions considered in the CONCUR project (see supra, Hersperger et al. 2019): Amsterdam, Barcelona, Copenhagen, Hamburg, Lyon, Manchester, Milan, Stockholm, Stuttgart. The criteria we followed to identify the 35 large-scale urban development projects are: geographical location, size (large-scale), site (located either in the city core or in the larger urban region) and urban function (e.g. housing, transportation infrastructures, service and knowledge economic functions). Employing these criteria facilitated the selection of diverse large-scale urban development projects while still ensuring sufficient comparability.
In 2016, we performed 47 in-depth interviews with experts in urban and regional planning and large-scale strategic projects and infrastructure (i.e. academics and practitioners) about the formulation, implementation and development (1990s–2010s) of each project in each of the 9 selected urban regions. On average, each interviewee answered questions on 3.1 large-scale urban development projects. Three cases were subdivided into two cases because a clear differentiation between specific implementation stages was identified by the interviewees (expansion of the Barcelona airport, cases “bcn_airport80-90” and “bcn_airport00-16”; realisation of Lyon Part-Dieu, cases “lyo_partdieu70-90” and “lyo_partdieu00-16”; MediaCityUK, cases “man_salfordquays80-00” and “man_mediacityuk00-16”). Therefore, from the initial 35 cases, the final number of analysed cases in the lsUDPs dataset is 38.

    3.2 The data set lsUDPs: Data management and operationalisation
Interviews were fully transcribed and analysed through MAXQDA (version 12.3, VERBI GmbH, Berlin, Germany), and intercoder agreement was evaluated on a sample of nine interviews. We also compiled “synthetic case descriptions” (SCD) for each case (totalling more than 160 SCDs) to spot potential inconsistencies among interviewees’ accounts and to facilitate completion of the “calibration table” for each case (see below). An online expert survey distributed to the interviewees (response rate 78%) helped systematise the information collected during the interviews. We also consulted both academic and gray literature on the case studies to check for possible ambiguity and inconsistencies in the interview data, and to solve discrepancies between our assigned set membership scores and questionnaire values. Site visits were also carried out to retrieve additional information on the selected cases.
For each case (i.e. each of the 38 selected large-scale urban development projects), we operationalised each condition (i.e. STATE, PRIVATE, EVENTS, TRANSP, RESIST) and the outcome (CONCOR) in terms of sets, for subsequent application of Qualitative Comparative Analysis. This process is called “calibration”; we used a number of indicators for each condition to qualitatively assess each large-scale project across the conditions. The case-based qualitative assessment was then transformed into fuzzy-set membership values. Fuzzy-set membership values range from 0 to 1, and should be conceived as “fundamentally interpretative tools” that “operationalize theoretical concepts in a way that enhances the dialogue between ideas and evidence” (Ragin 2000:162, in “Fuzzy-set Social Science”. Chicago: University Press). We employed a four-value fuzzy-set scale (0, 0.33, 0.67, 1) to “quantify” into set membership scores the individual histories of cases retrieved from interview data. Only the condition TRANSP was calibrated as a crisp-set (0, 1).
The translation of qualitative case-based information into numerical fuzzy-set membership values was iteratively performed by populating a calibration table following standard practices recently emerged in QCA when dealing with qualitative (interview) data.

europe

display_name: europe

land-use-change

display_name: land-use-change

land-use-transformations

display_name: land-use-transformations

large-scale-urban-development-projects

display_name: large-scale-urban-development-projects

spatial-planning

display_name: spatial-planning

strategic-projects

display_name: strategic-projects

strategic-spatial-planning

display_name: strategic-spatial-planning

urban-transformations

display_name: urban-transformations

en: lsUDPS Large-scale urban development projects in European urban regions


vegetation-height-model-sentinel-nfi

title_for_slug: vegetation-height-model-sentinel-nfi

en: nfi remote-sensing cnn vegetation-height switzerland sentinel-2 forest

media_type: image/tiff

format: TIFF

en: Countrywide vegetation height models (VHM) were generated for Switzerland based on Copernicus Sentinel-2 imagery and the digital terrain model (DTM) swissALTI3D from the Swiss Federal Office of Topography swisstopo. A Convolutional Neural Network (CNN) model was trained to estimate the maximum vegetation height at the spatial resolution of the Sentinel-2 pixel of 10 m. Vegetation heights from the spatially higher-resolved VHM Lidar NFI were used as reference data for the CNN training. Within the framework of the Swiss National Forest Inventory (NFI), the VHMs were modelled annually based on available Sentinel-2 imagery from May – September of the respective year. Further details on the creation of the VHM Sentinel NFI can be found in the paper Jiang et al. (2023, https://doi.org/10.1016/j.srs.2023.100099). Contains modified Copernicus Sentinel data.

cnn

display_name: cnn

forest

display_name: forest

nfi

display_name: nfi

remote-sensing

display_name: remote-sensing

switzerland

display_name: switzerland

vegetation-height

display_name: vegetation-height

educ

en: Education, culture and sport

en: Vegetation Height Model Sentinel NFI


en: forest-management sloss conservation saproxylic-beetles habitat-heterogeneity dead-wood biodiversity habitat-availability colonisation

en: Community matrix (all beetles)

en: Abundances of all beetle species for each branch bundle

en: Community matrix (saproxylic beetles)

en: Abundances of saproxylic beetle species for each branch bundle

en: Variable description

en: Detailed description of the forest and environmental variables

en: Forest and environmental variables

en: Data on the branch bundle, forest and environmental variables

en:
The data was generated during a landscape experiment performed on 69 plots in Sihlwald forest between 2016 and 2019. Branch bundles of different sizes consisting of beech branches were exposed in the forest for one year to be colonized by saproxylic beetles and later reared for one year in emergence traps. All beetles emerging from the branches were collected. Overall 244 branch bundles are included and we found 66 beetles species (23511 individuals) of which 43 were classified as saproxylic (20873 individuals).
 Species data (2 tables)
Two community matrices (including abundance): one for saproxylic beetles and one for all beetles. Beetles were classfied as saproxylic following an extended list of the list reported in Schmidl & Bussler (2004).
 Model data (1 table)
*Response variables*
Species richness and abundance of (saproxylic) beetles.
*Branch bundles*
Branch bundles consisted of 1, 3, 6 or 12 branches and each bundle size was installed at each of the 69 plots. The bundles consisted of standardized freshly cut beech branches (Fagus sylvatica) with a length of 80 cm and a diameter between 3 and 6 cm. Total surface and volume of each bundle is reported.
*Tree on which the bundle was installed*
Information on the tree to which the bundles were attached (tree species, dbh, distance and azimut from the plot center).
*Temperature and light availability*
Temperature (plot level) and light availability (bundle level) were calculated.
*Deadwood availability in the landscape*
Based on a map of lying dead wood, dead wood amount and isolation were calculated for concentric circles with a radius ranging from 20 to 200 m (in 10 m steps) around each branch bundle.
 Variable descriptions (1 table)

biodiversity

display_name: biodiversity

colonisation

display_name: colonisation

conservation

display_name: conservation

dead-wood

display_name: dead-wood

forest-management

display_name: forest-management

habitat-availability

display_name: habitat-availability

habitat-heterogeneity

display_name: habitat-heterogeneity

saproxylic-beetles

display_name: saproxylic-beetles

sloss

display_name: sloss

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Beetle communities reared from beech branches and associated forest and environmental variables


maintainer: Virginie Marques

en: fish-composition laperouse coral-reef teleo marine environmental-dna edna indian-ocean

en: Data access

en: Please use cyberduck to download for the moment

en:
Fish environmental DNA data set collected in the shallow seamount of La Pérouse located between Madagascar and Réunion Island

In 2019, we sampled the shallow seamount of La Pérouse, located between Madagascar and Réunion Island in the WIO. La Pérouse is an extinct volcano with a summit depth at 60 m below the sea surface. The plateau of the summit has a maximum length of 12 km and a maximum width of 4 km. One side of the seamount might have collapsed in the past, leading to a less common crescent-shaped summit. The abyssal plains that surround this isolated pinnacle are at a depth of 5000 m. Despite its proximity to Réunion Island (160 km northwest), La Pérouse and its surroundings are still poorly studied.
To sample eDNA in this location we used a submersible pump (Subspace, Geneva, Switzerland; nominal flow of ~ 1.0 L/min) to collect samples at various depths during close circuit rebreather dives. The pump has an internal battery and can be activated underwater allowing in situ filtration directly at the targeted habitat and depth. The filtration lasted for 30 min to collect a total water volume of ~ 30 L. During close circuit rebreather dives, water samples from various depths, ranging from 60 to 140 m below the sea surface, were collected using only the Submersible method (eight stations: no replicates). Out of the eight water samples, six were collected during the day, while two were collected at night (IS2_1 at 62 m and IS7_1 at 100–125 m). We applied this filtration protocols to collect and filter water throughout a VigiDNA® 0.2 μM cross-flow filtration capsule (SPYGEN, le Bourget du Lac, France) using disposable sterile tubing for each filtration capsule. After the filtration process, the remaining water in the capsules was emptied. The capsules were then filled with 80 ml of lysis conservation buffer (CL1 buffer SPYGEN, le Bourget du Lac, France) and stored at room temperature in the dark. At La Pérouse, a total of eight water samples were collected during the MONT LA PÉROUSE expedition (https://gombessa-expeditions.com/mont-la-perouse/) on board the ship La Curieuse to the seamount La Pérouse from October 27th to November 5th 2019. We followed a strict contamination control protocol in both field and laboratory stages. Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

coral-reef

display_name: coral-reef

edna

display_name: edna

environmental-dna

display_name: environmental-dna

fish-composition

display_name: fish-composition

indian-ocean

display_name: indian-ocean

laperouse

display_name: laperouse

marine

display_name: marine

teleo

display_name: teleo

en: Environmental DNA Marine France LaPerouse 2019


en: fractional-snow forest shading longwave-radiation shortwave-radiation

en: Seasonal sub-canopy radiation data

en:
Seasonal, spatially aggregated incoming and outgoing shortwave radiation below an evergreen forest stand collected with a cable car system.

The presented data is used and further described in the following paper: Malle et al. (2019). Shading by Trees and Fractional Snow Cover Control the Subcanopy Radiation Budget. Journal of Geophysical Research Atmospheres. DOI:10.1029/2018JD029908.

en: Radiation Data 18.04.2019

en:
Spatiotemporal incoming/outgoing shortwave and longwave radiation as well as sunlit and shaded-snow view fractions below an evergreen forest stand in the Swiss alps. Data was collected on 18th of April 2018 along a 48m long, heterogeneous forest stand under full snow cover conditions.

The presented data is used and further described in the following paper: Malle et al. (2019). Shading by Trees and Fractional Snow Cover control the Subcanopy Radiation Budget. Journal of Geophysical Research Atmospheres. DOI:10.1029/2018JD029908.

en: Radiation Data 25.4.2018

en:
Spatiotemporal incoming/outgoing shortwave and longwave radiation as well as sunlit and shaded-snow view fractions below an evergreen forest stand in the Swiss alps. Data was collected on 25th of April 2018 along a 48m long, heterogeneous forest stand under partial snow cover conditions.

The presented data is used and further described in the following paper: Malle et al. (2019). Shading by Trees and Fractional Snow Cover control the Subcanopy Radiation Budget. Journal of Geophysical Research Atmospheres. DOI:10.1029/2018JD029908.

en: Sky-view fraction along the cablecar transect

en: Data is used and described in the following paper: Malle et al. (2019). Shading by Trees and Fractional Snow Cover control the Subcanopy Radiation Budget. Journal of Geophysical Research. DOI:10.1029/2018JD029908.

en: This data set consists of incoming and outgoing short- and longwave radiation as well as sunlit-snow-view-fraction as described in the JGR-Atmospheres paper "Shading by trees and fractional snow cover control the sub-canopy radiation budget", by Malle et al. (2019). Data was collected along a 48m long, heterogeneous forest transect between January and June 2018 close to Davos, Switzerland.

forest

display_name: forest

fractional-snow

display_name: fractional-snow

longwave-radiation

display_name: longwave-radiation

shading

display_name: shading

shortwave-radiation

display_name: shortwave-radiation

educ

en: Education, culture and sport


maintainer: Tessa Hegetschweiler

en: adolescents childhood recreational-activities forest teenagers

en: Questionnaire school survey

en: The questionnaire used in the survey at 8 schools aimed at teenagers in German.

en: Dataset survey at schools

en: The dataset of the questionnaire survey at schools in excel format.

en: Dataset comments

en: The codebook to the dataset

en: Survey at schools 2017

en: The dataset of the questionnaire survey at schools in SPSS-format.

en: The data results from a questionnaire survey conducted at 8 schools in the cantons Zurich, Aargau and St. Gallen. Respondents aged 13-22 years. The aim of the survey was to gain insight into teenagers' relationship to the forest, reasons for visiting or not visiting the forest and activities in the forest.

adolescents

display_name: adolescents

childhood

display_name: childhood

recreational-activities

display_name: recreational-activities

teenagers

display_name: teenagers

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Factors influencing teenagers' forest visit frequency


biogas-aus-hofdunger-in-der-schweiz

title_for_slug: biogas-aus-hofdunger-in-der-schweiz

en: switzerland manure bioenergy review biogas

en: Biogas aus Hofdünger in der Schweiz

en: Ziel dieses Whitepapers ist es, Entscheidungsträgern, Verwaltungen und Stakeholdern die aktuellsten Forschungsergebnisse zur Verfügung zu stellen, um die optimale Nutzung von Bioenergie aus Hofdünger in der Schweizer Energiewende zu fördern. Zu diesem Zweck werden die Ergebnisse des Schweizer Kompetenzzentrums für Bioenergieforschung - SCCER BIOSWEET - zusammengefasst und in einem breiteren Kontext dargestellt. Wenn nichts anderes erwähnt wird, beziehen sich die Ergebnisse auf die Schweiz und im Falle der Ressourcen auf die heimischen Biomassepotenziale.

bioenergy

display_name: bioenergy

biogas

display_name: biogas

manure

display_name: manure

review

display_name: review

switzerland

display_name: switzerland


greenland-climate-network-gc-net-data

title_for_slug: greenland-climate-network-gc-net-data

en: air-temperature aws greenland automatic-weather-station climate net-radiation

en: 22-Petermann ELA

en: GC Net Config for Stations

media_type: application/json

en: Stations Config from the static bucket

format: JSON

en: GC Net Chart Parameters

en: Stations parameters from static bucket

en: Archived GC-Net Data (deprecated)

en:
The GC-Net is kindly continued by the Geological Survey of Denmark and Greenland (GEUS).

Starting October 3, 2022, the access to the latest versions of the "ready to use" L1 data has been migrated to GEUS, (doi:10.22008/FK2/VVXGUT). Future versions will be available from GEUS, while the initial versions of L0 and L1 data have been archived.

en: Access the latest L1 data

en:
The GC-Net is kindly continued by the Geological Survey of Denmark and Greenland (GEUS).

Starting October 3, 2022, the access to the latest versions of the "ready to use" L1 data has been migrated to GEUS, (doi:10.22008/FK2/VVXGUT). Future versions will be available from GEUS, while the initial version of L1 data has been archived.

en:
In Memory of Dr. Konrad (Koni) Steffen

Update October 2022: The GC-Net is kindly continued by the Geological Survey of Denmark and Greenland (GEUS).
Starting October 3, 2022, the access to the latest versions of the "ready to use" L1 data has been migrated to GEUS. Future data versions will be available at: [https://doi.org/10.22008/FK2/VVXGUT](https://doi.org/10.22008/FK2/VVXGUT)
 Background
Starting with a single station in 1991, the Greenland Climate Network (commonly known as GC-Net) is a set of Automatic Weather Stations (AWS) set up and managed by the late Prof. Dr. Konrad (Koni) Steffen, and spanning the Greenland Ice Sheet (GrIS). This first station was "Swiss Camp" or the "ETH-CU" camp (GC-Net station 01) which was used as a field science and education site by Koni for years. The GC-Net was expanded with multiple NASA, NOAA, and NSF grants throughout the years, and then supported by WSL in the later years. These data (see "C-file" below) were previously hosted by the Cooperative Institute for Research in Environmental Sciences (CIRES) in Boulder, Colorado.

 Overview
Provided in this dataset are the 16 longest running stations in the network, which are spread over a significant area of the GrIS and the majority of the unique climatic zones. From the South Dome high point in the South, to the Western Jakobshavn ablation region in the west, to the Petermann glacier in the North across east of the Northeast Greenland Ice Stream to the east, GC-Net is the longest running climatological record of Greenland.

 The standard GC-Net station consists of:
* Air temperature measurements at 2 heights above the surface
* Temperature and humidity measurements at 2 heights above the surface
* Wind speed and direction measured at 2 heights above the surface
* Sonic distance sounder measurements for 2 snow height and distance of instruments to surface
* Incoming shortwave radiation measurement
* Reflected shortwave radiation measurement
* Net broadband radiation (long- and short-wave) measurement
* Air pressure measurement
Data have often been repatriated in near-real time using one of either the GOES geostationary satellite or the ARGOS polar orbiting satellite transmission system. The stations were visited typically every 1-2 years for maintenance and service, and to download full uncorrupted data directly from the dataloggers. GC-Net stations were visited by Twin Otter equipped with snow skids to land directly on the open-ice at the AWS locations, or by helicopter near the west coast. The AWSs operate on solar and battery power and occasionally lost power during the dark and cold winter months, particularly when the batteries were aging.

 Dataset
This dataset consists of 2 main data levels; Level 0 and Level 1.
Level 0 is the raw data from the dataloggers, historical processing codes, satellite transmissions, and Koni’s personal data archive. Level 0 data (.zip) directories contain subdirectories:
* “C file” - contains the historical processed datafile for each station.
* “Campbell logger files” - contains the raw csv datafiles from the stations’ Campbell Scientific dataloggers since the CR1000 era (~2007-2008 for most stations).
* “Photos” - contains photographs of the station when available marked by year.
Level 1 is the appended, calibrated, cleaned, and quality flagged data. The full processing scheme is open-source and publicly available on the following GitHub repository (please also check GitHub for the latest L1 data):
[GC-Net L1 data on GitHub](https://github.com/GEUS-Glaciology-and-Climate/GC-Net-level-1-data-processing "GC-Net-level-1-data-processing")
Level 1 data is provided in the newly described csv-compatible [NEAD format](https://www.envidat.ch/#/metadata/nead "NEAD format").

 Additional Details
Dataset description publication will be forthcoming.
The Geological Survey of Denmark and Greenland (GEUS) has been imperative in the reprocessing and continuity mission of GC-Net. Multiple GC-Net stations have been replaced with updated and upgraded AWS hardware at the same coordinates by GEUS. This effort will ensure continuity of the GC-Net dataset into the future.

air-temperature

display_name: air-temperature

automatic-weather-station

display_name: automatic-weather-station

aws

display_name: aws

climate

display_name: climate

greenland

display_name: greenland

net-radiation

display_name: net-radiation

educ

en: Education, culture and sport

en: Greenland Climate Network (GC-Net) Data


swiss-fluxnet-site-davos

title_for_slug: swiss-fluxnet-site-davos

en: forest eddy-covariance flux icos meteorological-measurements swiss-fluxnet greenhouse-gas swiss-forest-lab

en: Data access

en: The flux and meteo data of the Swiss FluxNet site Davos are openly available. Near real-time flux and meteo data are uploaded daily to the ICOS Carbon Portal.

en: Site description

en: Fluxnet2015 dataset

en: Processed flux and meteo data are also part of the Fluxnet2015 dataset.

en: Processed data

en: Processed flux and meteo data are available from the European Fluxes Database Cluster.

en:
The Swiss FluxNet Site Davos is a managed subalpine evergreen forest, located on the Seehorn mountain near Davos in the Swiss Alps. The site is dominated by Norway spruce. The tower is owned by the Federal Office for the Environment (FOEN).
Ecosystem flux measurements of CO2, H2O (since 1997) as well as CH4 and N2O (since 2016) are performed with the eddy covariance method.
In addition to Swiss FluxNet, the site is part of the National Air Pollution Monitoring Network (NABEL), the Long term Forest Ecosystem Research (LWF), the biological drought and growth indicator network (TreeNet) and of ICOS Switzerland (Integrated Carbon Observation System). Since November 2019, the site is an ICOS Class 1 Ecosystem station.

Measurements

- Ecosystem flux measurements of CO2, H2O vapour (since 1997) as well a CH4 and N2O (since 2016) are performed with the eddy-covariance method. This method is based on measurements of trace gas mixing ratios, using infrared gas analyzers (for CO2, H2O vapor) and laser spectrometers (for CH4 and N2O), combined with wind speed and wind direction measurements, using 3D sonic anemometers. To resolve the short-term turbulent fluctuations in the atmosphere, very fast measurements are needed: we measure at 10-20 Hz, i.e., 10-20 times per second. To assess the energy budget of each ecosystem, also radiation sensors and soil climate profiles are installed at the site.
- Sub-canopy eddy fluxes (CO2, H2O, since 2023 also CH4).
- Continuous profile concentration and forest floor flux measurement of CO2, H2O, CH4, N2O.
- Auxiliary micrometeorology and soil climate measurements.

Data availability

Near real-time flux and meteo data uploaded daily to the ICOS Carbon Portal. Processed flux and meteo data are also available from the European Fluxes Database Cluster and part of Fluxnet2015 dataset.

Data policy

ICOS data license:
[https://www.icos-cp.eu/data-services/about-data-portal/data-license](https://www.icos-cp.eu/data-services/about-data-portal/data-license)

Detailed site info:
[https://www.swissfluxnet.ethz.ch/index.php/sites/ch-dav-davos/site-info-ch-dav/](https://www.swissfluxnet.ethz.ch/index.php/sites/ch-dav-davos/site-info-ch-dav/)

eddy-covariance

display_name: eddy-covariance

flux

display_name: flux

forest

display_name: forest

greenhouse-gas

display_name: greenhouse-gas

icos

display_name: icos

meteorological-measurements

display_name: meteorological-measurements

swiss-fluxnet

display_name: swiss-fluxnet

swiss-forest-lab

display_name: swiss-forest-lab

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Swiss FluxNet Site Davos


maintainer: Sven-Eric Hopf

en: iap monitoring ash-dieback forest fraxinus

en: Monitoring of ash trees as part of the Intercantonal Forest Observation Programme

en: Packgroun information on data for the publication: Spread and Severity of Ash Dieback in Switzerland – Tree Characteristics and Landscape Features Explain Varying Mortality Probability, (Klesse et al. 2021, Front. For. Glob. Change 4:645920., doi: 10.3389/ffgc.2021.645920)

en:
In 2013, the Institute for Applied Plant Biology (IAP) started a monitoring programme to study the development and the spatial variation of the ash dieback disease with the aim to find some partially resistant European ash trees (Fraxinus excelsior).
We collaborate as co-authors for the publication: Spread and Severity of Ash Dieback in Switzerland - Tree Characteristics and Landscape Features Explain Varying Mortality Probability (Klesse et al. 2021 in frontiers)

ash-dieback

display_name: ash-dieback

fraxinus

display_name: fraxinus

iap

display_name: iap

monitoring

display_name: monitoring


maintainer: Daniel Scherrer

en: bioclimatic-variables species-migration forest forest-model spatial-modelling gui r-package treemig forest-dynamics land-use species-interaction

en: TreeMig Simulation Environment and Input Data

en:
The zip file consists of a R-script to provide the framework, an example simulation environment and a set of input data.
- The R-script installAndRunTreeMigWrapperAndGUI.R installs the R-package, links to the input data and starts the graphical user interface.
- The gridded input datasets in TMInputData are specifically tailored to Switzerland and have the same coordinate reference system and a congruent 200m spatial resolution. They consist of climate, topographic, land use and soil data. For details see TMInputDataDetails.pdf.
- TMEnvironment is an example simulation environment, i.e. a set of hierarchically structured folders. For the first example simulation of the tutorial it contains the
  - the TreeMig executables for MacOS, Linux and Windows
  - simulation control files that define the setup and input files of the simulation (in folder C)
  - species parameters (in folder P)
  - bioclimatic data (in folder E)
  - folder R for results
  - folder Plots for plots of the simulation results.
  - This environment can be also used for the subsequent simulations of the tutorial.
- Some additional R-scripts demonstrate more complex applications described in the tutorial, e.g. coupling to another model.

en: TreeMig Tutorial

en: Description input data

en: Details where the input data come from and how they have been processed

en: Tutorial for using the TreeMig framework; updated

en:
Starter kit for the TreeMig framework that allows for an easy application of the forest landscape model TreeMig for simulating forest dynamics in space under changing environmental and land use conditions.
The starter kit consists of a set of climate, land-use, topography and soil property input data for Switzerland, a script for installing the framework and running the GUI of the framework with the link to the input data, a tutorial covering a range of simulation examples for Switzerland and a transect through Europe, and an associated example simulation environment containing the model executables and other model inputs.

bioclimatic-variables

display_name: bioclimatic-variables

forest-dynamics

display_name: forest-dynamics

forest-model

display_name: forest-model

gui

display_name: gui

land-use

display_name: land-use

r-package

display_name: r-package

spatial-modelling

display_name: spatial-modelling

species-interaction

display_name: species-interaction

species-migration

display_name: species-migration

treemig

display_name: treemig

educ

en: Education, culture and sport

en: Starter Kit for the TreeMig framework v1 for easy simulation of spatio-temporal forest dynamics


en: sustainability artificial-lighting outdoor-lighting alan ecosystem-services

en: R code for NMDS of flight-active insects

format: OCTET

en: Raw data for flying insects NMDS analysis

en: Raw data for ground-dwelling arthropod NMDS analysis

en: R code of flight-active insects analysis.

en: R code for PERMANOVA Analysis of flight-active insects.

en: R code of ground-dwelling arthropod analysis.

en: Raw data for flying insects analysis

en: R code for PERMANOVA Analysis of ground-dwelling arthropods.

en: R code of flight-active and ground-dwelling arthropod combined analysis.

en: R code for NMDS of ground-dwelling arthropods

en: Raw data Moran's I test

en: Raw data for flying insects and ground-dwelling arthropod combined analysis

en: Raw data for ground-dwelling arthropod analysis

en: Raw data and R Code to do all the analysis performed for the paper "Advancing sustainable LED solutions to mitigate light-pollution impacts on arthropods". Including data for both flight-active insects and ground-dwelling arthropods combined (PT_TRF_all.csv), flight-active insects alone (ALANeX_PT_all_clean_control.csv) and ground-dwelling insects alone (ALANeX_TRF_all_clean_control.csv). For the NMDS analysis, there is a data set for the flight-active insects (ALANeX_PT_NMDS.csv) and the ground-dwelling arthropods (ALANeX_TRF_NMDS.csv). For the Morans I use the 'ALANeX_MoransI.csv' dataset.

alan

display_name: alan

artificial-lighting

display_name: artificial-lighting

ecosystem-services

display_name: ecosystem-services

outdoor-lighting

display_name: outdoor-lighting

sustainability

display_name: sustainability

envidat

en: EnviDat: the Environmental Data Portal


en: land-use land-use-change landscape-services modeling switzerland statistical-model urbanization

en: Data for Assessing potential landscape service trade-offs driven by urbanization in Switzerland

en:
The provided folder structure follows the set up of the scripts.
Data is only provided when it has been fully produced by us, otherwise dummies are given.
For data that will be produced by one of the scripts, no dummies are given.
The folders may contain sub-folders, which would be filled if the scripts were all run

 00_Analysis_Data
Data produced throughout the process of the calibration and projection that is later needed for analysis

 01_Raw_Data
Primary data from external sources that were used to compile the rasters and numbers used during the calibration and projection of landscape transitions as well as service calculation

 02_Prepared_Data
Data that will be prepared for further use by scripts are put in here
Additionally it contains the parameter sheets for the transition predictors that we compiled

 03_Model_Data
 Model outputs
Folder were the projection models statistics will be saved
 Models
Folder into which the actual transition models will be saved
 Residuals
Folder into which data on models residuals will be saved for future use

 04_Projected_Data
The output of the projections will be saved into this folder

 05_Service_Data
Any service calculations will be saved in here

 06_Results_Analysis
Any Analysis plots and tables as well as intermediate data will be saved here in the respective sub-folder

en: Scripts for Assessing potential landscape service trade-offs driven by urbanization in Switzerland

en:
Scripts ordered by their main purpose within sequential folders in this ReadMe marked with

Within the folders the capital letters refer to the parallel or sequential use of the scripts; scripts here in ReadMe are marked with

 00_Function Scripts
 Functions.r
Script containing several functions for analyzing statistical models: cohen.kappa, meva.table, D2, max-Tss, plot-TSS

 Service_functions.R
Script containing functions for calculating all services and returning sums (and median for bd and rec) as well as rasters

 01_Data Preparation
 A_AS_raster_preparation.R
Preparation of the land use rasters for the years 1985, 1997, and 2009 based on the original Arealstatistik (AS/ASCH); Assigning our categories and assining new values to all "construction sites" for calibrating the models
For model projection starting point (2009) and for service calculations (all ASCH years) the "other" categories were assigned to the land use categories based on dominant neighbor, so that there were no empty cells
Creation of water & mountainous area raster that stayed stable throughout the projections
Creation of MFH raster (2009), to have as base for all new projection years, as this category never becames any other

 B_Factors_preparation.R
Preparation of the factor rasters that were used to calculate service values per cell (see Table 2): LWfactor, Transportation, Vol, Rivers, Lakes, slope, TWW, Hazard_risk

 B_Predictors_preparation.R
Preparation of the raster of the predictors used for calibrating (ASCH years) and projecting (stable) the transition models that do not depend on the land use categories: Temperature (ASCH years), solar radiation (stable), Public transportation access (stable), Elevation (stable), Workers density (ASCH years), Population change (ASCH transitions)

 B_Regions_preparation.R
Preparation of bioregions as raster to be used to mask asxxxx later to calculated services and land use area just for one region

 C_Pred_proj.R
Projecting the dynamic predictors into the future for projecting the land use transitions with the model: Linear extrapolations for workers densities and population; more detailed extrapolation of temperature (based on data for all stations that matched between the temp table we used for the calibration period and the projections from CS2M, and then making a spatial interpolation for all years based on the interpolation of temperature for all years per station)

 02_Model calibration
 A_Bioreg_pred_corr.R
Calculating correlation between the predictors for each bioregion and land use category, Output are those with too high correlation so that one predictor can be removed from transitions were both predictors occur

 A_trans_numbers_bioreg.R
Calculate transition numbers for each bioregion to decide which transitions to primarily consider

 B_Bioreg_ext_eval.R
Calculating TSS based on the external evaluation for the bioregion transitions that happened often enough to try to model them (calibration data: 85-97, evaluation data: 97-09)

 B_Bioreg_int_eval.R
Calculating TSS based on the internal evaluation for the bioregion transitions that happened often enough to try to model them (calibration data: 70%, evaluation data: 30%)

 C_Bioreg_TSS_analysis.R
Extracting TSS numbers from internal and external evaluation, calculating mean and median for each transition for each region for each evaluation method and saving as csv per region to be able to select only the transitions with high enough model performance

 D_Bioreg_Models_for_prediction.R
Calibration of the models that were then used to project land use transitions into the future; calibrated separately for each bioregion

 E_Residuals_trans_models.R
Calculation of Moran's I statistics to analyze the residuals of the land use transition models

 03_Projections
 A_Bioreg_Projections_run.R
Master script for: Extrapolaitng into the future with the regional models and then assembling for each time step to calculate new AS predictors; Several Outputs: txt file to test for NAs in Predictors, txt file with random seed number for sampling, txt file with times for calculation steps (check progress of script while running), csv sheet with projected transition frequencies, tif-rasters for every region and time step, pdf with raster plot for every region and time step

 04_Service calculation
 A_Bioreg_as_services.R
Calculate services per bioregion for years 1985, 1997, 2009

 A_Service_calculation_bioregions.R
Extracting service numbers(sums) per bioregions for all projection runs and storing them in a list of matrixes to be available for further plotting; can be run for swiss wide projections or regional ones

 05_Analysis
 A_Bioreg_ASCH_development.R
Extracting the occurrence of each category per region for all runs (first part), then for ASCH years, and then plotting them nicely; only works for regional projections

 A_Bioreg_Predictors_importanceD2.R
Calculating D2 for each transition and each considered predictor from bivariate models to get value of importance

 B_Bioreg_Pred_imp_analysis.R
Using calculated D2 to sort Predictors according to their importance for each transition

 A_Bioreg_Spatial_results_analysis.R
Plotting randomly sampled runs for ASCH and services to analyses their spatial development

 A_Bioreg_Transition_numbers_check_v1.R
Analyzing the frequency for all transitions for all regions and producing the point plots for each transition separately

 A_Bioreg_Transition_numbers_check_v2.R
Analyzing percentage and numbers of all transitions but plotting them per region and originating ASCH category

 B_Transition_Analysis.R
Further Analysis of transition numbers

 A_Service_analysis.R
Plotting of the service development for bioregions in several ways for analyzing

en:
Data and scripts of publication:

Madleina Gerecke, Oskar Hagen, Janine Bolliger, Anna M. Hersperger, Felix Kienast, Bronwyn Price, Loïc Pellissier (2019) Assessing potential landscape service trade-offs driven by urbanization in Switzerland. Palgrave communications.

Contains land use projections for Switzerland and scripts and data for these projections as well as the calculation of landscape services.

Data Folder:
Contains sub-folder with the data necessary for this study (provided were no copyright issues, otherwise placeholders with descriptions), and folders where produced data may be stored

Scripts Folder:
Contains scripts organized into subfolders depending on their purpose

Note: Some abbreviations within the scripts and data are derived from German words and not English.

land-use-change

display_name: land-use-change

landscape-services

display_name: landscape-services

modeling

display_name: modeling

statistical-model

display_name: statistical-model

switzerland

display_name: switzerland

urbanization

display_name: urbanization

educ

en: Education, culture and sport

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Land use projections and services for Switzerland


climarctic-seasons

maintainer: Aline Frossard

title_for_slug: climarctic-seasons

en: microbial-functions greenhouse-gases soil arctic microbial-biodiversity

en: Climarctic seasons dataset Envidat.xlsx

en:
Samples description
•	sample number: sample list number (S1 to S126)
•	season: season during which the samples were collected
•	location: one of the two location where the samples were collected in the vicinity of Ny Alesund on Svalbard
•	slope site: sites where the samples were collected along the toposequence (upslope = top of the slope, midslope = middle of the slope, downslope = bottom of the slope)
•	soil layer: depth layer where the sample were collected (biocrust = 0-2 cm and mineral soil = 5-10 cm)
•	replicate: replicated sampled (3 replicates per site)
Environmental variables
•	pH = pH value of the soil
•	sand = proportion of sand of the soil [%]
•	silt = proportion of silt of the soil [%]
•	clay = proportion of clay of the soil [%]
•	GWC = Gravimetric Water content in the soil [%]
•	OM = Organic Matter content in the soil [g]
•	N = Total Nitrogen content in soil [mg/g]
•	C = Total Carbon content in soil [mg/g]
•	C/N = ration of C content over N content [ratio]
•	NO3 = Nitrate content in soil [mg/kg]
•	NO2 = Nitrite content in soil [mg/kg]
•	NH4 = Ammonium content in soil [mg/kg]
•	Ptot = Total Phosphorus content in soil [mg/kg]
•	Pavail = Available Phosphorus content in soil [mg/kg]
•	PO4 = Phsphate content in soil [mg/kg]
•	CO2 = CO2 fluxes from soil [mmol CO2 m-2 d-1]
•	CH4 = CH4 fluxes from soil [umol CH4 m-2 d-1]
•	N2O = N2O fluxes from soil [umol CH4 m-2 d-1]
•	GPP = Gross Primary Production [mmol CO2 m-2 d-1]
•	ER = Ecosystem respiration [mmol CO2 m-2 d-1]
•	NEE = Net Ecosystem Exchange [mmol CO2 m-2 d-1]
•	glucoOM = glucosidase enzyme activity [mmol h-1 gOM-1]
•	23 xyloOM = xylosidase enzyme activity [mmol h-1 gOM-1]
•	chitOM = N-acetyl-glucosaminidase (chitinase) enzyme activity [mmol h-1 gOM-1]
•	phosOM = phosphatase enzyme activity [mmol h-1 gOM-1]
•	leuOM = leucine-aminopeptidase enzyme activity [mmol h-1 gOM-1]
•	PPOM = Polyphenol Peroxidase enzyme activity [mmol h-1 gOM-1]
•	POOM = Polyphenol Oxidase enzyme activity [mmol h-1 gOM-1]
•	30. Bac16SOM = Bacterial 16S gene abundance [copies gOM-1]
•	31. BacamoAOM = Bacterial amoA gene abundance [copies gOM-1]
•	32. ArchamoAOM = Archaeal 16S gene abundance [copies gOM-1]
•	33. nifHOM = nifH gene abundance [copies gOM-1]
•	34. nirSOM = nirS gene abundance [copies gOM-1]
•	35. nosZOM = nosZ gene abundance [copies gOM-1]
•	36. nxrBOM = nxrB gene abundance [copies gOM-1]
•	37. mcrAOM = mcrA gene abundance [copies gOM-1]
•	38. pmoAOM = pmoA gene abundance [copies gOM-1]

en: This dataset includes measurements of potential microbial functions (potential extracellular enzyme activities and microbial functional genes abundance) and soil physico-chemical properties (pH, nutrients, texture, etc) in biocrusts and underlying mineral soils in High-Arctic tundra near Ny-Ålesund (Svalbard) during each season along a toposequence.

arctic

display_name: arctic

greenhouse-gases

display_name: greenhouse-gases

microbial-biodiversity

display_name: microbial-biodiversity

microbial-functions

display_name: microbial-functions

soil

display_name: soil

en: Climarctic seasons


maintainer: Maria Elvira Murazzi

en: polystyrene forest-trees uptake 13c-labelling nanoplastic

en: Nanoplastic in forests experiment

en:
Data embargoed until August 2022, and it will be provided upon request

-  excel file containing: two working sheets (leaf supply and root supply experiment) with a table with the values 13C-nanopolystyrene in the different tissues of the two forest tree species; graph showing the differences between controls and treatments of 13C-nanopolystyrene enrichment for each tissue of each forest tree species; ANOVA table showing significant values after having exposed the tree species to 13C-nanopolystyrene

en:
The fate of plastic in the environment is of global concern, because its production recently has
increased strongly and it accumulates in terrestrial and aquatic ecosystems. Although some knowledge on
its role in aquatic and terrestrial ecosystems was gained in the recent decade, hitherto very little is known
about the impact of micro and nanoplastics in forest ecosystems.

The aim of this pioneering project was to explore if nanoplastics are taken up by forest trees species
through leaves or roots. In greenhouse experiments, we exposed leaves or roots of seedling of two forest
trees species to solutions with highly 13C-labelled polystyrene nanoparticles (13C-nPS, 99 atom%) and
examined if they were incorporated in different above- and belowground tissues.

Treated part of the trees for both species showed significant 13C-enrichment, indicating that trees take up nanoparticles. However, the overall 13C signal strength in tissues that were not exposed to the 13C label remained low (Δδ13C<1‰) and was confined to a few seedlings, leaving it ambiguous whether nanoplastic transport occurs or not.

We acknowledge that the new method developed might be not sensitive enough to unequivocally detect
mechanisms of nanoplastic uptake and transport at environmentally realistic concentrations.

forest-trees

display_name: forest-trees

nanoplastic

display_name: nanoplastic

polystyrene

display_name: polystyrene

uptake

display_name: uptake

en: Nanoplastics in forests: Exploring the effects of nanoplastics on forest soils and tree physiology (NanoPlast)


en: biological-control dryocosmus-kuriphilus pest-invasion torymus-sinensis southern-switzerland castanea-sativa population-evolution

en:
Data has been collected from summer 2011 to 2016.

Main reasons for NA values:

-	D. kuriphilus still not arrived in the site.
-	No galls were found during the field sampling.
-	Site has not been sampled in the correspondent year because of time, weather or money constrains.
-    T. sinensis not found in the galls

Variable description:

Year = sampling year.

Coordinate, elevation, slope, aspect = average site characteristics.

ts_arrival = T. sinensis arrival year.

dk_arrival = D. kuriphilus arrival year.

dk_parasitism_by_ts = D. kuriphilus parasitism rate by T. sinensis. Formula: (no. of T. sinensis/ no. of D. kuriphilus chambers) * 100 at gall level.

dk_infestation = Percentage of attacked buds. Formula: no. of attacked buds / no. of total developed buds*100 (as presented in Kotobuki et al. 1985) at shoot level.

ts_per_bud = number of alive T. sinensis individual calculated at bud level.

dk_per_bud = number of alive D. kuriphilus individual calculated at bud level.

dk_pot_per_bud = overall number (dead and alive) D. kuriphilus individual calculated at bud level.

total_gall_nr_per_bud = average gall number per bud.

chamber_per_galls = average D. kuriphilus chamber number per gall.

For details see the submitted publication with the same name

References
Kotobuki, K., Mori, K. and Sato, Y. (1985) ‘2 methods to estimate the tree damage by chestnut gall wasp Dryocosmus-kuriphilus’, Bulletin of the fruit tree research station A (Yatabe), 2(12), pp. 29–36.

mimetype: text/csv

en:
This dataset contains the population evolution of a pest and its biocontrol agent in terms of presence proportion at gall level and absolute number of insects.

The study area extends from the Cuneo region (Piedmont, Italy) to southern Switzerland. In order to provide a complete range of data covering the entire process from the pest arrival to complete biological control by its natural enemy T. sinensis, a space-for-time substitution approach has been adopted so as to create a temporal gradient of the epidemic stages over the whole study area.

The southernmost Swiss sites roughly represent the arrival and establishment of the pest without the presence of the natural enemy, the central ones the early epidemic stage and the epidemic peak, whereas the northern ones the end of the epidemic with the beginning of the biocontrol. The Italian ones represent the beginning of the equilibrium between the two population as well as the situation with stable T. sinensis populations on the long term.

These data are used in the paper entitled: Torymus sinensis local and regional early population dynamics in the Insubrian and Piedmont regions

biological-control

display_name: biological-control

castanea-sativa

display_name: castanea-sativa

dryocosmus-kuriphilus

display_name: dryocosmus-kuriphilus

pest-invasion

display_name: pest-invasion

population-evolution

display_name: population-evolution

southern-switzerland

display_name: southern-switzerland

torymus-sinensis

display_name: torymus-sinensis

envidat

en: EnviDat: the Environmental Data Portal


maintainer: Jana von Freyberg

en: solutes snowmelt-rate stable-water-isotopes snowmelt-lysimeter snowpack-outflow

en: The dataset contains volumes, solutes and stable water isotopes of snowpack outflow at daily resolution. 10-minute data are provided of the measurements taken by three snowmelt lysimeter systems at spatially-distributed locations.

en:
This data contain volumes, solutes and isotopes of snowpack outflow measured by a snowmelt lysimeter system at three locations in the southern Alp catchment, situated Central Switzerland. The river Alp is a snow-dominated catchment situated in Central Switzerland characterized by an elevation range from 840 to 1898 m a.s.l.
The dataset provides solutes (major anions and cations, trace metals) and stable water isotopes and water fluxes (snowpack outflow volumes) at daily intervals from several sampling locations. Additionally, the data measured by the snowmelt lysimeter system are provided in 10-minute resolution.

snowmelt-lysimeter

display_name: snowmelt-lysimeter

snowmelt-rate

display_name: snowmelt-rate

snowpack-outflow

display_name: snowpack-outflow

solutes

display_name: solutes

stable-water-isotopes

display_name: stable-water-isotopes

educ

en: Education, culture and sport

en: Daily data of the volumes, solutes and isotopes in snowpack outflow measured at three locations in the southern Alp catchment


swiss-fluxnet-site-lageren

title_for_slug: swiss-fluxnet-site-lageren

en: flux meteorological-measurements forest eddy-covariance swiss-forest-lab greenhouse-gas swiss-fluxnet

en: Site description

en: Data access

media_type: text/html

en: The flux and meteo data of the Swiss FluxNet site Lägeren are openly available from the European Fluxes Database Cluster.

format: HTML

en:
The Swiss FluxNet Site Lägeren is a managed mixed deciduous mountain forest located on the steep Lägeren mountain (NW of Zurich, Swiss Plateau). The forest is highly diverse, dominated by beech, but also including ash, maple, spruce and fir trees. Eddy covariance flux measurements were started in April 2004. The site was part of the international CarboEurope IP network and the National Air Pollution Monitoring Network (NABEL). In addition to Swiss FluxNet, the site is part of the Long-term Forest Ecosystem Research (LWF) of WSL and the biological drought and growth indicator network (TreeNet) of WSL.

Measurements

- Ecosystem flux measurements of CO2, H2O vapour are performed with the eddy-covariance method. This method is based on measurements of trace gas mixing ratios, using infrared gas analyzers (for CO2, H2O vapor), combined with wind speed and wind direction measurements, using 3D sonic anemometers. To resolve the short-term turbulent fluctuations in the atmosphere, very fast measurements are needed: we measure at 10-20 Hz, i.e., 10-20 times per second. To assess the energy budget of each ecosystem, also radiation sensors and soil climate profiles are installed at the site.
- Sub-canopy eddy fluxes (CO2, H2O), soil respiration campaigns
- Continuous CO2 profile measurements.
- Auxiliary micrometeorology and soil climate measurements.

Data availability

All data are available from the European Fluxes Database Cluster, but are also part of Fluxnet2015 dataset.

Data policy

ICOS data license:
[https://www.icos-cp.eu/data-services/about-data-portal/data-license](https://www.icos-cp.eu/data-services/about-data-portal/data-license)

Detailed site info:
[https://www.swissfluxnet.ethz.ch/index.php/sites/ch-lae-laegeren/site-info-ch-lae//](https://www.swissfluxnet.ethz.ch/index.php/sites/ch-lae-laegeren/site-info-ch-lae/)

eddy-covariance

display_name: eddy-covariance

flux

display_name: flux

forest

display_name: forest

greenhouse-gas

display_name: greenhouse-gas

meteorological-measurements

display_name: meteorological-measurements

swiss-fluxnet

display_name: swiss-fluxnet

swiss-forest-lab

display_name: swiss-forest-lab

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Swiss FluxNet Site Lägeren


envidat-supports-open-science

maintainer: Ionut Iosifescu Enescu

title_for_slug: envidat-supports-open-science

en: open-science wsl research-data-management envidat juypter-notebooks

en: Article as PDF

en:
The article "EnviDat Supports Open Science" originally appeared in WSLintern No. 3 (2020), page 14-15 and it is republished here with permission from the WSLintern editorial team. It contains guidelines for WSL scientists about the main issues behind Open Science and how to pragmatically approach the complexities of doing Open Science with EnviDat’s support.

License: This article is released by WSL and the EnviDat team to the public domain under a Creative Commons 4.0 CC0 "No Rights Reserved" international license. You can reuse the information contained herein in any way you want, for any purposes and without restrictions.

envidat

display_name: envidat

juypter-notebooks

display_name: juypter-notebooks

open-science

display_name: open-science

research-data-management

display_name: research-data-management

wsl

display_name: wsl

en: EnviDat Supports Open Science


en: rhythmic-growth piloderma-croceum ectomycorrhiza oak quercus-robur cenococcum-geophilum

en:
Contains growth stage data assessed over the experimental period.
Columns:
- ID = Tree identifier.
- Set = Date of plant preparation.
- Treatment = Experimental treatment.
- Date = Date of growth stage assessment,
- Days = Number of past days since start of experiment.
- Stage = Growth stage (XY = Groth cycle & development stage).
- Week = Experimental week.

en:
Contains phenotypic data assessed during the destructive sampling step of the experiment.
Columns:
- ID = Tree identifier.
- Treatment = Experimental treatment.
- nSF = Number of completed shoot flushes.
- Max_Stages_Reached = Total number of growth stages reached during the experiment.
- n_L_SF1 = Number of leaves of the second newest shoot flush at time of sampling.
- n_L_SF2 = Number of leaves of the newest shoot flush at time of sampling.
- Alive = Plant alive or not.
- Contamination = Plant contaminated or not.
- Exclude = Exclude plant or not.
- Shoot_Length_Init = Shoot length at start of the experiment.
- Shoot_Length = Shoot length at sampling.
- Delta_Length = Shoot length increase during experiment.
- FW_Plant = Fresh weight total plant.
- DW_Plant = Dry weight total plant.
- FW_Shoot = Fresh weight shoot.
- DW_Shoot = Dry weight shoot.
- FW_Stem = Fresh weight stem.
- DW_Stem = Dry weight stem.
- FW_L_SF1 = Fresh weight leaves second newest shoot flush.
- DW_L_SF1 = Dry weight leaves second newest shoot flush.
- FW_L_SF2 = Fresh weight leaves newest shoot flush.
- DW_L_SF2 = Dry weight leaves newest shoot flush.
- FW_L_Rest = Fresh weight remaining leaves.
- DW_L_Rest = Dry weight remaining leaves.
- FW_Bud = Fresh weight bud.
- DW_Bud = Dry weight bud.
- FW_Roots_Total = Fresh weight total roots.
- DW_Roots_Total = Dry weight total roots.
- FW_PR = Fresh weight principal roots.
- DW_PR = Dry weight principal roots.
- FW_LR = Fresh weight lateral roots.
- DW_LR = Dry weight lateral roots.
- A_L_SF1 = Leave area second newest shoot flush.
- A_L_SF2 = Leave area newest shoot flush.
- N_Ceno = Number of root tips mycorrhized by *Cenococcum geophilum*.
- N_Pilo = Number of root tips mycorrhized by *Piloderma croceum*.
- N_Other = Number of root tips mycorrhized by other species.
- N_No = Number of not mycorrhized root tips.
- Length_Tot = Total root length.
- Area_Tot = Total root surface area.
- Diameter_Avg = Average root diameter.
- Root_Vol = Total root volume.
- Tips = Total number root tips.
- Forks = Total number root forks.
- Crossings = Total number root crossings.
- Length_Fine = Root length fine roots (diameter < 1mm).
- SA_Fine = Surface area fine roots (diameter < 1mm).
- Vol_Fine = Volume fine roots (diameter < 1mm).

en:
In this experiment, we investigated the inoculation-effects of two ectomycorrhizal fungi (EMF) species with contrasting evolutionary histories, ecological properties, host-preferences, and habitat-ranges on phenotypic responses and growth dynamics of pedunculate oak (*Quercus robur*), an ecologically and economically important temperate forest tree species.

We set up the mycorrhization experiment using 96 plants of a genetically uniform *Q. robur* clone (DF159) and applied four treatments: A control treatment; an inoculation-treatment with the cosmopolitan Ascomycete *Cenococcum geophilum*, which is commonly found in oak forests; an inoculation-treatment with the Basidiomycete *Piloderma croceum*, which has not yet been found in natural oak forests but has been shown in previous experiments to support oak growth; and a co-inoculation treatment. We then assessed growth stage development of the trees over eight experimental weeks and measured various phenotypic traits during a destructive sampling.

cenococcum-geophilum

display_name: cenococcum-geophilum

ectomycorrhiza

display_name: ectomycorrhiza

oak

display_name: oak

piloderma-croceum

display_name: piloderma-croceum

quercus-robur

display_name: quercus-robur

rhythmic-growth

display_name: rhythmic-growth

envidat

en: EnviDat: the Environmental Data Portal

en: Phenotypic and Growth Stage Development Data of a Quercus robur Mycorrhization Experiment


maintainer: Frank Techel

en: avalanches shapefile observations alps snow

en: Selected wet snow avalanche activity data Davos, Switzerland (2011-2014)

en: Zip archive with shapefiles for the selected wet snow avalanche polygons, including metadata.

en:
Polygons of wet snow avalanches in the Davos area, as documented by the Swiss avalanche warning service. The georeferenced outlines of the avalanches contain both the release as well as the deposit area, but without separating between both.

The dataset is a subset of the total record of 1615 avalanches classified as wet snow avalanches from October 2011 - September 2014, containing those 255 avalanches exceeding 0.0125 km^2. Every polygon comes with meta data, including the date of occurrence.

This dataset is the underlying dataset to:
Wever, N., Vera Valero, C. and Techel, F. (2018) _Coupled snow cover and avalanche dynamics simulations to evaluate wet snow avalanche activity_. Submitted to J. Geophys. Res., in review.

alps

display_name: alps

avalanches

display_name: avalanches

observations

display_name: observations

shapefile

display_name: shapefile

snow

display_name: snow

educ

en: Education, culture and sport