maintainer: Anita Risch

en: exclusion swiss-national-park ecosystem-multifunctionality vertebrates ecosystem-functions ecosystem-coupling invertebrates grazing subalpine grassland

en: Datafile

en:
ID: Plot ID composited of Fence & Treatment number (90 plots total)

Grassland: Name of the six subalpine grasslands where the exclosure setups were erected. In large grasslands (GRIM, MING, STAB), we established four hierarchical exclosure setups (two in short- and two in tall-grass vegetation), whereas in the small grasslands (BOTS, DADA, MARG) only one setup was erected per vegetation type. BOTS = Val dal Botsch, GRIM = Grimmels, MING = Val Mingér, STAB = Alp Stabelchod, DADA = Stabelchod da daint, MARG = Margunet

Fence: Number of exclosure setup (1 - 18). Note that uneven numbers (1,3,5,7,9,11,13,15,17) represent setups established on short-grass vegetation, even numbers (2,4,6,8,10,12,14,16,18) setups established in tall-grass vegetation
Vegetation	Vegetation type, 1 = short-grass vegetation, 2 = tall-grass vegetation; (9 replicate fences on each vegetation type)
Treatment	Progressive animal exclusion, numbers indicate which animals had access to the plot: 1 = Large/medium/small mammals, and invertebrates have access ("L/M/S/I"), 2 = Medium/small mammals, and invertebrates have access (“M/S/I”), 3 = Small mammals and invertebrates have access (“S/I”), 4 = Invertebrates have access (“I”), 5 = No animals have access (“None”)

Bulkden:	Fine fraction soil bulk density (g cm-3)

Soil.moist	: Soil moisture (%)

Soil.org.C: Rhizosphere soil C content (%)

pH: Soil pH

Nema.PC1: First principal component (PC1) of principal component analysis (PCA) of the soil nematode community composition

Nema.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil nematode community composition

Micro.PC1: 	First principal component (PC1) of principal component analysis (PCA) of the soil microbial community composition

Micro.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil microbial community composition

Abv.Inv.PC1: First principal component (PC1) of principal component analysis (PCA) of the aboveground-dwelling invertebrate community composition

Abv.Inv.PC2: Second principal component (PC2) of principal component analysis (PCA) of the aboveground-dwelling invertebrate community composition

Arthr.PC1: First principal component (PC1) of principal component analysis (PCA) of the soil arthropod community composition

Arthr.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil arthropod community composition

Plant.PC1: First principal component (PC1) of principal component analysis (PCA) of the plant community composition

Plant.PC2: Second principal component (PC2) of principal component analysis (PCA) of the plant community composition

Root.biomass: Root biomass (g m-2)

Micro.biomass	: Microbial biomass carbon (mg kg-1)

Plant.richness: Plant species richness

Plant.N: Plant tissue nitrogen content (%)

Soil.N.min: Soil net nitrogen mineralisation (kg ha-1 season)

Soil.resp: Soil carbon dioxide emissions (soil respiration; g m-2 h-1)

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:
 > Risch AC, Ochoa-Hueso R, van der Putten WH, Bump JK, Busse MD, Frey B, Gwiazdowicz DJ, Page-Dumroese DS, Vandegehuchte ML, Zimmermann S, Schütz M. Size-dependent loss of aboveground animals differentially affects grassland ecosystem coupling and functions. 2018. Nature Communications 9: 3684. [doi: 10.1038/s41467-018-06105-4](https://doi.org/10.1038/s41467-018-06105-4).

Please cite this paper together with the citation for the datafile.

#Methods
Study sites
The experimental exclosure setups were installed within the SNP (IUCN category Ia preserve; Dudley 2008), in south-eastern Switzerland. The park covers 172 km2 of forests and subalpine and alpine grasslands along with scattered rock outcrops and scree slopes. The entire area has been protected from human impact (no hunting, fishing, camping or off-trail hiking) since 1914. Large, fairly homogenous patches of short- and tall-grass vegetation, which originate from different historical management and grazing regimes, cover the park’s subalpine grasslands entirely. Short-grass vegetation developed in areas where cattle used to rest (nutrient input) prior to the park’s foundation (14th century to 1914) (Schütz and others 2003, 2006) and is dominated by lawn grass species such as Festuca rubra L., Briza media L. and Agrostis capillaris L. (Schütz and others 2003, 2006). Today, this vegetation type is intensively grazed by diverse vertebrate and invertebrate communities that inhabit the park and consume up to 60% of the available biomass (Risch and others 2013). Tall-grass vegetation developed where cattle formerly grazed, but did not rest, and is dominated by rather nutrient-poor tussocks of Carex sempervirens Vill. and Nardus stricta L. (Schütz and others 2003, 2006). This vegetation type receives considerably less grazing, with only roughly 20% of the biomass consumed (Risch and others 2013). Consequently, the two vegetation types together represent a long-term trajectory of changes in grazing regimes. Underlying bedrock of all grasslands is dolomite, which renders these grasslands rather poor in nutrients regardless of former and current land-use regimes.
Experimental design
To progressively exclude aboveground vertebrate and invertebrate animals, we established 18 size-selective exclosure setups (nine in short-grass, nine in tall-grass vegetation) distributed over six subalpine grasslands across the SNP (Risch and others 2013, 2015). Elevation differences of exclosure locations did not exceed 350 m (between 1975 and 2300 m a.s.l.). The exclosures were established immediately after snowmelt in spring 2009 and were left in place for five consecutive growing seasons (until end of 2013). They were, however, temporarily dismantled every fall (late October after first snowfall) to protect them from avalanches. They were re-established in the same location every spring immediately after snowmelt. Each size-selective exclosure setup consisted of five plots (2 x 3 m) that progressively excluded aboveground vertebrates and invertebrates from large to small. The plots are labelled according to the guilds that had access to them “L/M/S/I”, “M/S/I”, “S/I”, “I”, “None”; L = large mammals, M = medium mammals, S = small mammals, I = invertebrates, None = no animals had access. As we only had permission to have the experimental setup in place for five consecutive growing seasons, the experiment had to be completely dismantled in the late fall of 2013 and all material removed from the SNP.
Our exclosure design was aimed at excluding mammalian herbivores, but naturally also excluded the few medium and small mammalian predators, as well as the entire aboveground invertebrate food web. A total of 26 large to small mammal species can be found in the SNP, but large apex predators are missing (wolf, bear, lynx) . Reptiles, amphibians and birds are scarce to absent in the subalpine grasslands under study. Only two reptile species occur in the park and they are confined to rocky areas that warm up enough for them to survive. One frog species spawns in an isolated pond far from our grasslands. Only three bird species occasionally feed on the subalpine grasslands. Using game cameras (Moultrie 6MP Game Spy I-60 Infrared Digital Game Camera, Moultrie Feeders, Alabaster, AL, USA), we did observe that the medium- and small-sized mammals (marmot/hares and mice) were not afraid to enter the fences and feed on their designated plots. We never spotted reptiles, amphibians or birds on camera. We distinguished between 59 higher aboveground-dwelling invertebrate taxa that our size-selective exclosures excluded (see also methods for aboveground-dwelling invertebrates below).
The “L/M/S/I” plot (not fenced) was located at least 5 m from the 2.1 m tall and 7 x 9 m large main electrical fence that enclosed the other four plots. The bottom wire of this fence was mounted at 0.5 m height and was not electrified to enable safe access for medium and small mammals, while fencing out the large ones. Within each main fence, we randomly established four 2 x 3 m plots separated by 1-m wide walkways from one another and from the main fence line: 1) the “M/S/I” plots were unfenced, allowing access to all but the large mammals; 2) the “S/I” plots (10 x 10 cm electrical mesh fence) excluded all medium-sized mammals. Note that the bottom 10 cm of this fence remained non-electrified to enable safe access for small mammals; 3) the “I” plots (2 x 2 cm metal mesh fence) excluded all mammals. We double-folded the mesh at the bottom 50 cm to reduce the mesh size to smaller than 1 x 1 cm openings; and 4) the “None” plots were surrounded by a 1 m tall mosquito net (1.5 x 2 mm) to exclude all animals. The top of the plot was covered with a mosquito-meshed wooden frame mounted to the corner posts (roof). We treated these plots a few times with biocompatible insecticide (Clean kill original, Eco Belle GmbH, Waldshut-Tiengen, Germany) to remove insects that might have entered during data collection or that hatched from the soil, but amounts were negligible and did not impact soil moisture conditions within these plots.
To assess whether the design of the “None” exclosure (mesh and roof) affected the response variables within the plots and, therefore, influenced the results, we established an additional six “micro-climate control” exclosures (one in each of the six grasslands) (Risch and others 2013, 2015). These exclosures were built as the “None” exclosures but were open at the bottom (20 cm) of the 3-m side of the fence facing away from the prevailing wind direction to allow invertebrates to enter. A 20-cm high and 3-m long strip of metal mesh was used to block access to small mammals. Thus, this construction allowed a comparable micro-climate to the “None” plots, but also a comparable feeding pressure by invertebrates to the “I” plots. We compared various properties within these exclosures against one another to assess if our construction altered the conditions in the “None” plots. We showed that differences in plant (e.g., vegetation height, aboveground biomass) and soil properties (e.g., soil temperature, moisture) found between the “I” and the “None” treatments were not due to the construction of the “None” exclosure, but a function of animal exclusions, although the amount of UV light reaching the plant canopy was significantly reduced (Risch and others 2013).
Aboveground invertebrate sampling
Aboveground invertebrates were sampled with two different methods to capture both ground- and plant-dwelling organisms: 1) we randomly placed two pitfall traps (67 mm in diameter, covered with a roof) filled with 20% propylene glycol in one 1 x 1 m subplot of the 2 x 3 m treatment plots in spring 2013 (May) and emptied them every two weeks until late September 2013 (Vandegehuchte and others 2017b, 2018). A pitfall trap consisted of a plastic cylinder (13 cm depth, 6.75 cm diameter). Within each cylinder we placed a 100 ml plastic vial with outer diameter 6.70 cm and on top of the cylinder we placed a plastic funnel to guide the invertebrates into the vials. Each trap was cover with a cone-shaped and transparent plastic roof to protect the trap from rain (Vandegehuchte and others 2017b, 2018). Note that in the “None” plots only one trap was placed as control to check for effectiveness of the exclosure. 2) We vacuumed all invertebrates from a 60 x 60 cm area on another 1 x 1 m subplot with a suction sampler (Vortis, Burkhard manufacturing CO, Ltd., Rickmansworth, Hertfordshire, UK) every month from June to September 2013 (Vandegehuchte and others 2017b, 2018). For this purpose, we quickly placed a square plastic frame (60 x 60 x 40 cm) with a closable mosquito mesh sleeve attached to the top edge into the plot from the outside. The suction sample was then inserted into through the sleeve and operated for 45 s to collect the invertebrates (Vandegehuchte and others 2017b, 2018).
We sorted the ≈100 000 individuals collected with both methods by hand and identified each individual morphologically to the lowest taxonomic level feasible (59 taxa, including orders, suborders, subfamilies, families; phylum for Mollusca). These taxa belonged to the following feeding types: 19 herbivores, 16 detritivores, 9 predators, 8 mixed feeders, 5 omnivores and 2 non-classified feeders (or not feeding as adults) (Vandegehuchte and others 2017b). We summed the numbers from the two pitfall traps and the suction sampling over the course of the 2013 season to represent the aboveground invertebrate abundance and community composition of a plot. Note: we did not specifically attempt to catch flying invertebrates with e.g., sticky traps, thus a few flying insects may have been missed with our vacuum sampling approach.
Sampling of plant properties
The vascular plant species composition was assessed at peak biomass every summer (July) by estimating the frequency of occurrence of each species with the pin count method in each plot (Frank and McNaughton 1990). A total of 172 taxa occurred within our 90 plots and we calculated plant species richness for each plot separately. We used the 2013 data in this study. Plant quality was assessed every year in July and September; here we use plant quality at the end of the experiment (September 2013). Two 10 x 100 cm wide strips of vegetation per plot were clipped, combined, dried at 65°C, and ground (Pulverisette 16, Fritsch, Idar-Oberstein, Germany) to pass through a 0.5 mm sieve. Twenty randomly selected samples across all treatments were analysed for N (Leco TruSpec Analyser, Leco, St. Joseph, Michigan, USA) (Vandegehuchte and others 2015). Nitrogen concentrations of the other samples were then estimated from models established for the experiment and the entire SNP relating Fourier transform-near infrared reflectance (FT-NIR) spectra to the measured values of N using a multi-purpose FT-NIR spectrometer (Bruker Optics, Fällanden, Switzerland) (Vandegehuchte and others 2015). Root biomass was sampled every fall by collecting five 2.2 cm diameter x 10 cm deep soil samples (Giddings Machine Company, Windsor, CO, USA) per plot (450 samples year-1). The samples were dried at 30 °C and roots were sorted from the sample by hand. We sorted each sample for 1 h which allowed to retrieve over 90% of all roots present in the samples (Risch and others 2013). The roots were then dried at 65 °C for 48 and weighed to the nearest mg. We averaged the values per plot and used the 2013 data only in this study.
Sampling of edaphic communities
In 2009, 2010, and 2011 we collected three composited soil samples (5 cm diameter x 10 cm depth; AMS Samplers, American Falls, ID, USA) and assessed bacterial community structure using T-RFLP profiling (Liu and others 1997; Blackwood and others 2003; Hodel and others 2014). We detected a total of 89 operational taxonomic units (OTUs). These values are in accordance with other studies reporting OTU richness (Wirthner and others 2011; Zumsteg and others 2012; Meola and others 2014) using T-RFLP profiling, a method that detects the most abundant, and thus likely, the most relevant, taxa. We averaged the data over the three years of collections for our calculations. Microbial biomass carbon (MBC) was determined with the substrate-induced method (Anderson and Domsch 1978) every fall (September) between 2009 and 2013 by collecting three mineral soil samples (5 cm diameter × 10 cm mineral soil core, AMS Samplers, American Falls, ID, USA). The three samples were combined (90 samples for each sampling year), immediately put on ice, taken to the laboratory, passed through a 2-mm sieve and stored at 4°C. Again, we only used the 2013 data in this study.
Soil samples (5 cm diameter x 10 cm depth) to extract soil arthropods were collected in June, July, and August 2011 with a soil corer lined with a plastic sleeve to ensure an undisturbed sample (total of 270 samples). The plastic line core was immediately sealed on both ends using cling film and put into a cooler. All plots were sampled within three days and the extraction of arthropods started the evening of the sampling day using a high-gradient Tullgren funnel apparatus (Crossley and Blair 1991; Vandegehuchte and others 2015). Samples were kept in the extractor for four days and the soil arthropods were collected in 95% ethanol. All individuals were counted and each individual was identified morphologically to the lowest level feasible [76 taxa, including orders, suborders, subfamilies, families (Protura, Thysanoptera, Aphidina, Psylina, Coleoptera, Brachycera, Nematocera, Auchenorryncha, Heteroptera, Formicidae); sub-phylum for Myriapoda, for Acari and Collembola also including morpho-species). Note that we also included larval stages (nine of the 76 taxa) (Vandegehuchte and others 2015). All data were summed over the season. A detailed species list for mites and collembolans is published (Vandegehuchte and others 2017a) [https://doi.org/10.1371/journal.pone.0118679.s001]. Earthworms are rare in the SNP and therefore were not included. We collected eight random 2.2 cm diameter x 10 cm deep soil cores from each plot in September 2013 to determine the soil nematode community composition. The samples were mixed and the nematodes were extracted from 100 ml of fresh soil using Oostenbrink elutriators (Oostenbrink 1960). All nematodes in a 1 ml of the 10 ml extract were counted, a minimum of 150 individuals sample-1 were identified to genus or family level using (Bongers 1988), the numbers of all nematodes were extrapolated to the entire sample and expressed for a 100 g dry sample. In total we identified 63 genus or family levels (Vandegehuchte and others 2015). The list of all the nematodes found is published (Vandegehuchte and others 2015) [http://www.oikosjournal.org/appendix/oik-03341] or DOI: [doi: 10.1111/oik.03341].
We are aware that sampling soil microbes from 2009 to 2011 and soil arthropods in 2011 was not ideal, but we are positive that this does not bias the results. Most of the parameters measured in our experiment either already showed a treatment response after the first growing season (e.g., plant biomass) or did not respond over the entire time experiment (e.g., microbial biomass C). The microbial community composition (2009 – 2011) was highly influenced by inter-annual differences in temperature and precipitation, but did not differ between treatments or vegetation types (Hodel and others 2014). We therefore felt comfortable using the 2009 through 2011 data for describing the soil microbial community in our experimental treatments. Similarly, we are positive that our soil arthropod data are representative. We did assess soil arthropods in August 2012 and found no differences to the August 2011 data. However, we did not feel comfortable combining the 2011 June, July, August data with only August data for 2012 for our analyses.
Sampling of soil properties
We collected three soil samples (5 cm diameter x 10 cm depth) in each plot in September 2013 after removing the vegetation. First, we collected the top layer of mineral soil rich in organic matter, the surface organic layer or rhizosphere, typically 1 to 3 cm in depth with a soil corer (AMS Samples, American Falls, Idaho, USA). Second, we collected a 10 cm mineral soil core beneath this surface layer. The cores for each layer were composited, dried at 65 °C for 48 h and fine-ground to pass a 0.5 mm screen. We then analysed all samples for total C using a Leco TruSpec Analyser (Leco, St. Joseph, Michigan, USA). Mineral soil pH was measured potentiometrically in 1:2 soil:CaCl2 solution with an equilibration time of 30 min.
Soil net N mineralisation was assessed during the 2013 growing season (Risch and others 2015). For this purpose, we randomly collected a 5 cm diameter x10 cm deep soil sample with a soil corer (AMS Samples, American Falls, Idaho, USA) after clipping the vegetation in June 2013. After weighing and sieving (4 mm mesh) the soil, we extracted a 20 g subsample in 1 mol l-1 KCl for 1.5 h on an end-over-end shaker and thereafter filtered it through ashless folded filter paper (DF 5895 150, ALBET LabScience, Hahnenmühle FineArt GmbH, Dassel, Germany). From these filtrates NO3- concentrations were measured colorimetrically (Norman and Stucki 1981) and NH4+with flow injection analysis (FIAS 300, Perkin Elmer, Waltham Massachusetts, USA) (Risch and others 2015). We dried the rest of the sample 105 °C to constant mass to determine fine,fraction bulk density. A second soil sample was collected within each plot in June 2013 with a corer lined with a 5 x 13 cm aluminium cylinder. The corer was driven 11.5 cm deep into the soil so that the top 1.5 cm of the cylinder remained empty. Into this space we placed a polyester bag (250 µm) filled an ion-exchanger resin to capture the incoming N. The bag was filled with a 1:1 mixture of acidic and alkaline exchanger resin (ion-exchanger I KA/ion exchanger IIIAA, Merck AG, Darmstadt, Germany). We then removed 1.5 cm soil at the bottom of the cylinder and placed a second resin exchanger bag into this space to capture the N leached from the soil column. To assure that the exchange resin was saturated with H+ and Cl- prior to filling the bags, the mixture was stirred with 1.2 ml l-1 HCl for 1 h and then rinsed with demineralized water until the electrical conductivity of the water reached 5 µm cm-1. The cylinder with the resin bags in place was reinserted into the soil with the top flush to the soil surface and incubated for three months. We recollected the cylinders in September 2013. Each resin bag and 20 g of sieved soil (4 mm mesh) from each cylinder were then separately extracted with KCl and NO3- and NH4+ concentrations were measured. Nitrate and NH4+ concentrations of all samples were then converted to a content basis by multiplying their values with fine fraction bulk density. Net N mineralisation was thereafter calculated as the difference between the N content of the samples collected at the end of the three-month incubation (including the N extracted from the bottom resin bag) and the N content at the beginning of the incubation (Risch and others 2015).
Soil CO2 emissions were measured every two weeks between 0900 and 1700 hrs from early May through late September 2013 with a PP-Systems SRC-1 soil respiration chamber (15 cm high, 10 cm diameter; closed circuit) attached to a PP-Systems EGM-4 infrared gas analyser (PP-Systems, Amesbury, MA, USA) on two locations per plot (Risch and others 2013). The chamber was placed on randomly placed, permanently installed PVC collars (10 cm diameter) driven 5 cm into the soil at the beginning of the study (Risch and others 2013). Freshly germinated plants growing within the collars were removed prior to each measurement to avoid measuring plant respiration or photosynthesis. The two measurements collected per plot and sampling date were averaged.
Soil moisture (with time domain reflectometry; Field-Scout TDR-100, Spectrum Technologies, Plainfield, Illionois, USA) and temperature (with a waterproof digital pocket thermometer; Barnstead International, Dubuque, Iowa, USA) were measured at five random locations per plot every two weeks during the growing seasons during the experiment for the 0 to 10 cm depth (Risch and others 2013, 2015). As soil moisture and soil temperature were highly negatively correlated (Risch and others 2013), we only used soil moisture for this study. We used plot-level averages of all values available to capture soil moisture variability during the five years of the experiment. The results remained unchanged when we only used soil moisture from the 2013 growing season.
Numeral calculations and statistical analyses
Ecosystem coupling. We conducted principal component analyses (PCAs; unscaled) at the complete dataset level using the abundances of each taxonomical entity to describe each of the five different communities used in this study: aboveground-dwelling invertebrates, vascular plants, soil microorganisms, soil arthropods and soil nematodes. We retained the first two components (PCA axis 1 and PCA axis 2) of each analysis as we found them to adequately represent the temporal and spatial variability of our 90 treatment plots in previous studies55,67. Together they explained a total of 71.70% of the variation for aboveground invertebrates, 44.36% for plants, 44.85% for soil microorganisms, 61.85% for soil arthropods and 77.19% for soil nematodes. In addition, we used soil pH and soil organic C content as a proxy for soil chemical properties, soil bulk density as a proxy for soil physical properties and soil moisture (negatively correlated with soil temperature) as a proxy for soil micro-climatic conditions for an overall total of fourteen constituents.
We calculated ecosystem coupling9 for each exclosure treatment within each vegetation type (i.e., 2  5 treatment combinations in total) as an integrated measure of pairwise ecological interactions between ecosystem constituents representing ecological communities and the soil abiotic environment. These ecological interactions are defined by non-parametric Spearman rank correlation analyses between two constituents, excluding interactions involving two abiotic constituents (e.g., soil pH vs. soil moisture) and interactions between the first (PC1) and second (PC2) component of each community type, as these are orthogonal by definition. Interactions between abiotic constituents were excluded from the analyses because the focus of our study was on communities and how they interact with one another and their surrounding environment; therefore, including abiotic-abiotic interactions was not of interest here. Given that the effectiveness of our experimental design resulted in that no community composition data of aboveground-dwelling invertebrates was available for the “None” plots (all animals excluded), only thirteen instead of fourteen constituents were included in the ecosystem coupling calculations for this treatment. The complete absence of aboveground invertebrates represents the most extreme case of disturbance between aboveground animal communities and the rest of the ecosystem constituents. This may have resulted in a slight overestimation of ecosystem coupling for these plots.
	Average ecosystem coupling was calculated as follows:
Ecosystem coupling=
where Xi is the absolute Coupling was calculated value of the Spearman’s rho coefficient of the ith correlation for each treatment within each vegetation type (i.e., based on nine replicates each), considering and n is the number of pairwise comparisons considered (n = a total of 80; interactions (56 in the case of the “None” treatment). We considered a total of 40 biotic-biotic interactions (i.e., concerning two community-level principal components such as plants and microbes; 24 in the case of the “None” treatment) and 40 abiotic-biotic (i.e., concerning one community-level principal component and one abiotic factor, e.g., plant community and soil properties; 32 in the case of the “None” treatment).	Coupling was calculated for each treatment within each vegetation type (i.e., based on nine replicates each), considering a total of 80 interactions (56 in the case of the “None” treatment). We considered a total of 40 biotic-biotic interactions (i.e., concerning two community-level principal components such as plants and microbes; 24 in the case of the “None” treatment) and 40 abiotic-biotic (i.e., concerning one community-level principal component and one abiotic factor, e.g., plant community and soil properties; 32 in the case of the “None” treatment).
To establish whether constituents were significantly and positively coupled within treatments (i.e., the average of their correlation coefficients were greater than in a null model where correlation only happens by chance), we calculated one-tailed p-values based on permutation tests with 999 permutations.

We considered six ecosystem functions and process rates commonly used to assess ecosystem functioning (Meyer and others 2015; Manning and others 2018). Plant N content represents a measure of forage quality, while plant richness has been shown to stabilise biomass production, thus allowing the system to respond to changes in herbivory. Soil net N mineralisation, soil respiration, root biomass, and microbial biomass represent fluxes or stocks of energy. For all functions and processes higher values represent higher functioning (Manning and others 2018). All these variables were measured in the last year of the experiment (2013). We then quantified ecosystem multifunctionality using the multiple threshold approach (Byrnes and others 2014; Manning and others 2018), which considers the number of functions that are above a certain threshold, over a series of threshold values (typically 10-99%) that are defined based on the maximum value of each function. We weighted all our functions equally for these calculations (Manning and others 2018). The number of functions in a plot with values higher than a given threshold value for the respective function is summed up. The sum represents ecosystem multifunctionality for that plot. Given that choosing any particular threshold as a measure of ecosystem multifunctionality is arbitrary, we calculated the average of thresholds from 10-90% (in 10% intervals) as a more integrated representation of ecosystem multifunctionality.
We used Pearson correlations to explore the relationships between ecosystem coupling (all interactions, biotic-biotic interactions, abiotic-biotic interactions involving above- and belowground constituents, and all interactions, biotic-biotic interactions, abiotic-biotic interactions involving belowground constituents only) and ecosystem multifunctionality by calculating the slopes of all relationships between ecosystem coupling and multifunctionality for all thresholds between 10 and 99%. We also related ecosystem coupling with the average of multifunctionality at thresholds between 30-80% as explained before and considered this correlation as a robust indication of the type of association between these two variables. In addition, we explored the relationships between ecosystem coupling (all interactions, biotic-biotic interactions, abiotic-biotic interactions involving above- and belowground constituents, and all interactions, biotic-biotic interactions, abiotic-biotic interactions involving belowground constituents only) and individual ecosystem functions. The effects of exclosures and vegetation type on individual functions and multifunctionality were evaluated using linear mixed effects models ('lme' function of the nlme package), with exclosure and vegetation type as fixed effects and fence as a random factor. All statistical analyses and numerical calculations were done in R version 3.4.0 (R Core Team 2016).

#References

- Anderson J, Domsch K. 1978. A physiological method for the quantitative measurement of microbial biomass in soil. Soil Biol Biochem 10:215–21.
- Blackwood CB, Marsh T, Kim S-H, Paul EA. 2003. Terminal Restriction Fragment Length Polymorphism Data Analysis for Quantitative Comparison of Microbial Communities. Appl Environ Microbiol 69:926–32. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC143601/
- Bongers T. 1988. De nematoden von Nederland. Schoorl, The Netherlands: Pirola
- Byrnes JEK, Gamfeldt L, Isbell F, Lefcheck JS, Griffin JN, Hector A, Cardinale BJ, Hooper DU, Dee LE, Duffy JE. 2014. Investigating the relationship between biodiversity and ecosystem multifunctionality: Challenges and solutions. Methods Ecol Evol 5:111–24.
- Crossley DAJ, Blair JM. 1991. A high-efficiency low-technology Tulgren-type extractor for soil microarthopods. Agric Ecosyst Environ 34:187–92.
- Dudley N. 2008. Guidelines for applying protected area managment categories. Gland: IUCN
- Frank DA, McNaughton SJ. 1990. Aboveground biomass estimation with the canopy intercept method: A plant growth form caveat. Oikos 57:57–60.
- Haynes AG, Schütz M, Buchmann N, Page-Dumroese DS, Busse MD, Risch AC. 2014. Linkages between grazing history and herbivore exclusion on decomposition rates in mineral soils of subalpine grasslands. Plant Soil 374.
- Hodel M, Schütz M, Vandegehuchte ML, Frey B, Albrecht M, Busse MD, Risch AC. 2014. Does the aboveground herbivore assemblage influence soil bacterial community composition and richness in subalpine grasslands? Microb Ecol 68:584–95.
- Liu WT, Marsh TL, Cheng H, Forney LJ. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63:4516–22. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168770/
- Manning P, van der Plas F, Soliveres S, Allan E, Maestre FT, Mace G, Whittingham MJ, Fischer M. 2018. Redefining ecosystem multifunctionality. Nat Ecol Evol 2:427–36. https://doi.org/10.1038/s41559-017-0461-7
- Meola M, Lazzaro A, Zeyer J. 2014. Diversity, resistance and resilience of the bacterial communities at two alpine glacier forefields after a reciprocal soil transplantation. Environ Microbiol 16:1918–34. https://onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.12435
- Meyer ST, Koch C, Weisser WW. 2015. Towards a standardized Rapid Ecosystem Function Assessment (REFA). Trends Ecol Evol 30:390–7. http://www.sciencedirect.com/science/article/pii/S0169534715000968
- Norman R., Stucki JW. 1981. The determination of nitrate and nitrite in soil extracts by ultraviolet spectrophotometry. Soil Sci Soc Am J 45:347–53.
- Ochoa-Hueso R. 2016. Non-linear disruption of ecological interactions in response to nitrogen deposition. Ecology 87:2802–2814.
- Oostenbrink M. 1960. Estimating nematode populations by some selected methods. In: Sasser NJ, Jenkins WR, editors. Nematology. Chapel Hill, NC, USA: University of North Carolina Press. pp 85–101.
- R Core Team. 2016. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing
- Risch AC, Haynes AG, Busse MD, Filli F, Schütz M. 2013. The response of soil CO2 fluxes to progressively excluding vertebrate and invertebrate herbivores depends on ecosystem type. Ecosystems 16:1192–202.
- Risch AC, Schütz M, Vandegehuchte ML, Van Der Putten WH, Duyts H, Raschein U, Gwiazdowicz DJ, Busse MD, Page-Dumroese DS, Zimmermann S. 2015. Aboveground vertebrate and invertebrate herbivore impact on net N mineralization in subalpine grasslands. Ecology 96:3312–22.
- Schütz M, Risch AC, Achermann G, Thiel-Egenter C, Page-Dumroese DS, Jurgensen MF, Edwards PJ. 2006. Phosphorus translocation by red deer on a subalpine grassland in the Central European Alps. Ecosystems 9:624–633.
- Schütz M, Risch AC, Leuzinger E, Krüsi BO, Achermann G. 2003. Impact of herbivory by red deer (Cervus elaphus L.) on patterns and processes in subalpine grasslands in the Swiss National Park. For Ecol Manage 181:177–88.
- Vandegehuchte ML, van der Putten WH, Duyts H, Schütz M, Risch AC. 2017a. Aboveground mammal and invertebrate exclusions cause consistent changes in soil food webs of two subalpine grassland types, but mechanisms are system-speciﬁc. Oikos 126:212–23.
- Vandegehuchte ML, Raschein U, Schütz M, Gwiazdowicz DJ, Risch AC. 2015. Indirect short- and long-term effects of aboveground invertebrate and vertebrate herbivores on soil microarthropod communities. PLoS One 10:e0118679.
- Vandegehuchte ML, Schütz M, de Schaetzen F, Risch AC. 2017b. Mammal-induced trophic cascades in invertebrate food webs are modulated by grazing intensity in subalpine grassland. J Anim Ecol 86:1434–46.
- Vandegehuchte ML, Trivellone V, Schütz M, Firn J, de Schaetzen F, Risch AC. 2018. Mammalian herbivores affect leafhoppers associated with specific plant functional types at different timescales. Funct Ecol 32:545–55.
- Wirthner S, Frey B, Busse MD, Schütz M, Risch AC. 2011. Effects of wild boar (Sus scrofa L.) rooting on the bacterial community structure in mixed-hardwood forest soils in Switzerland. Eur J Soil Biol 47:296–302. http://dx.doi.org/10.1016/j.ejsobi.2011.07.003
- Zumsteg A, Luster J, Göransson H, Smittenberg RH, Brunner I, Bernasconi SM, Zeyer J, Frey B. 2012. Bacterial, Archaeal and Fungal Succession in the Forefield of a Receding Glacier. Microb Ecol 63:552–64. https://doi.org/10.1007/s00248-011-9991-8

ecosystem-coupling

display_name: ecosystem-coupling

ecosystem-functions

display_name: ecosystem-functions

ecosystem-multifunctionality

display_name: ecosystem-multifunctionality

exclusion

display_name: exclusion

grassland

display_name: grassland

grazing

display_name: grazing

invertebrates

display_name: invertebrates

subalpine

display_name: subalpine

swiss-national-park

display_name: swiss-national-park

vertebrates

display_name: vertebrates

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Ecosystem coupling and multifunctionality - exclosure experiment


en: phytosociology vegetation-type character-species diagnostic-species typoch vegetation-classification

state: active

type: dataset

en: TypoCH_modified list.csv

media_type: text/csv

en:
The file contains the vegetation types and the modified list of diagnostic species (based on Delarze et al. (2015). The numbers indicate the weight of a species in the particular vegetation type for the calculation of the TypoCH score:
1) accompanying species -> 1 point
2) dominant accompanying species (if >10% cover in the plot) -> 2 points
3) character species -> 4 points
4) dominant character species (if >10% cover in the plot) -> 8 points

format: CSV

en: How the TypoCH list was modified.pdf

media_type: application/pdf

en: Describes details on the modification procedure to improve the TypoCH reference list.

format: PDF

en: The TypoCH scoring system (Eggenberg & Bornand 2023), which is widely used in Switzerland, provides good results as classification method for vegetation types based on Delarze et al. (2015). However, the reference list contained species with no diagnostic value and important character species were missing. We therefore made a first attempt to modify the list based on numerical methods and expert knowledge to improve the classification success, at least for vegetation types of the open land (i.e. grasslands, fens, bogs).

character-species

display_name: character-species

diagnostic-species

display_name: diagnostic-species

phytosociology

display_name: phytosociology

typoch

display_name: typoch

vegetation-classification

display_name: vegetation-classification

vegetation-type

display_name: vegetation-type

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Modified TypoCH reference list of diagnostic species for the classification of vegetation types in Switzerland


maintainer: Dominique Weber

en: mowing landsat sentinel-2 remote-sensing management use-intensity grassland land-use

en: Readme

media_type: text/plain

en: Metadata and description of the maps and webcam-based reference data.

format: TXT

en: Grassland-use intensity map 2018

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2018. See readme file for more details.

format: GeoTIFF

en: Grassland-use intensity map 2020

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2020. See readme file for more details.

en: Webcam-based reference data

en: Webcam-based reference data from 2020 and 2021 (see readme).

format: SERVICE

en: Preview time of 1st grassland management event 2020

media_type: image/png

en: Spatial distribution of the timing (day of year; DOY) of the first management event for Switzerland and for three zoomed-in regions (a, b, c). The three zoomed-in regions show different grassland-use intensities, which are reflected in the timing of the first event of the year (Weber et al., 2023; IN REVIEW)

format: PNG

en: Grassland-use intensity map 2019

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2019. See readme file for more details.

en: Preview number of grassland management events 2020

en: Spatial distribution of the number of management events for Switzerland and for three zoomed-in regions (a, b, c). The three zoomed-in regions show different grassland-use intensities, which are reflected in the distribution of management frequency (Weber et al., 2023; IN REVIEW)

en: Grassland-use intensity map 2021

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2021. See readme file for more details.

en:
A rule-based algorithm [(Schwieder et al., 2022)](https://doi.org/10.1016/j.rse.2021.112795) was used to produce annual maps for 2018–2021 of grassland-management events, i.e. mowing and/or grazing, for Switzerland using Sentinel-2 and Landsat 8 satellite time series. All satellite images were processed with the [FORCE](https://force-eo.readthedocs.io) framework.

The resulting maps provide information on the number and timing of grassland-management events at a spatial resolution of 10 m × 10 m for the whole of Switzerland. For the final maps, permanent grasslands were masked using a variety of land-use layers, according to [Huber et al. (2022)](https://doi.org/10.1002/rse2.298) but replacing the crop mask with the agricultural-use data from the cantons.

We assessed the detection of management events based on independent reference data, which we acquired from daily time series of publicly available webcams that are widely distributed across Switzerland. We further tested the ecological relevance of the generated intensity measures in relation to nationwide biodiversity data (see [Weber et al., 2023](https://doi.org/10.1002/rse2.372)).

The webcam-based reference data used for verification was subsequently added on 14.02.2024.

land-use

display_name: land-use

landsat

display_name: landsat

management

display_name: management

mowing

display_name: mowing

remote-sensing

display_name: remote-sensing

use-intensity

display_name: use-intensity

en: Grassland-use intensity maps for Switzerland


bryophytes-of-europe-traits-bet-dataset

maintainer: EnviDat Support

title_for_slug: bryophytes-of-europe-traits-bet-dataset

en: iucn life-history-traits mosses liverworts hornworts bioclimatic-variables indicator-values red-list

en: Excel file including the BET dataset and (trait) explanations.

format: XLS

en: Text file including the BET dataset.

en: PDF including the (trait) explanations.

en: The Bryophytes of Europe Traits (BET) dataset includes values for 65 biological and ecological traits and 25 bioclimatic variables for all 1816 bryophytes included in the European Red List (Hodgetts et al. 2019). The traits are compiled from several regional trait datasets and manually complemented using Floras, species-specific literature and expert knowledge. The bioclimatic variables are calculated using the European range of each species. Details regarding the trait compilation and extraction of bioclimatic variables can be found in the corresponding data paper (Van Zuijlen et al. 2023).

bioclimatic-variables

display_name: bioclimatic-variables

hornworts

display_name: hornworts

indicator-values

display_name: indicator-values

iucn

display_name: iucn

life-history-traits

display_name: life-history-traits

liverworts

display_name: liverworts

mosses

display_name: mosses

red-list

display_name: red-list

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


distributed-acoustic-sensing-brienz

title_for_slug: distributed-acoustic-sensing-brienz

en: seismic natural-hazard rockfall landslide early-warning machine-learning

en: Data access

en:
This dataset contains the Distributed Acoustic Sensing (DAS), radar detection data used for training and result analysis in the GRL paper titled `Automatic Monitoring of Rock-Slope Failures Using Distributed Acoustic Sensing and Semi-Supervised Learning`.
The DAS dataset (both waveform and cross-spectral density matrices), extracted features, labeled dataset, two trained models (feature extraction model and xgboost classification model), scripts to reproduce the whole training and classification processes, and a notebook to replicate the result analysis part are provided under the MIT license. To provide a reasonable data size, we chunked the raw data to a few hundred channels which we used in our project.
Abstract:
Effective use of the wealth of information provided by Distributed Acoustic Sensing (DAS) for mass movement monitoring remains a challenge. We propose a semi-supervised neural network tailored to screen DAS data related to a series of rock collapses leading to a major failure of approximately 1.2 million cubic meters on 15 June 2023 in Brienz, Eastern Switzerland. Besides DAS, the dataset from 16 May to 30 June 2023 includes Doppler radar data for partially ground-truth labeling. The proposed algorithm is capable of distinguishing between rock-slope failures and background noise, including road and train traffic, with a detection precision of over 95%. It identifies hundreds of precursory failures and shows sustained detection hours before and during the major collapse. Event size and signal-to-noise ratio (SNR) are the key performance dependencies. As a critical part of our algorithm operates unsupervised, we suggest that it is suitable for general monitoring of natural hazards.

early-warning

display_name: early-warning

landslide

display_name: landslide

machine-learning

display_name: machine-learning

natural-hazard

display_name: natural-hazard

rockfall

display_name: rockfall

seismic

display_name: seismic

en: Distributed Acoustic Sensing Brienz


snow-drift-station-micro-rain-radar

title_for_slug: snow-drift-station-micro-rain-radar

en: mountain rain snow raclets precipitation radar

en: MRR data of period 4

media_type: application/zip

en: The dataset contains measurements between March 13 and March 22, 2019, with time in UTC. The parameters and specifications are given in MRR_parameters.pdf. The zip folder contains hourly data files in netCDF format and a log file, reporting the instrument status.

format: ZIP

mimetype: application/zip

en: MMR Data Period 1

en: The dataset contains measurements between March 1 and March 5, 2019, with time in UTC. The parameters and specifications are given in MRR_parameters.pdf. The zip folder contains hourly data files in netCDF format and a log file, reporting the instrument status.

en: Parameter MRR

en: The PDF contains additional information on parameters which were set for the certain time periods (time in UTC).

mimetype: application/pdf

en: MRR data Period 2

en: The dataset contains measurements between March 5 and March 8, 2019, with time in UTC. The parameters and specifications are given in MRR_parameters.pdf. The zip folder contains hourly data files in netCDF format and a log file, reporting the instrument status.

en: MRR data of period 3

en: The dataset contains measurements between March 8 and March 13, 2019, with time in UTC. The parameters and specifications are given in MRR_parameters.pdf. The zip folder contains hourly data files in netCDF format and a log file, reporting the instrument status.

en: The instrument (MRR, Metek) was mounted at Gotschnagrat (LON: 46.859 LAT: 9.849) at a height of 1 m above snow surface (at the beginning of the campaign) with an orientation of 22° with respect to North and a horizontal viewing direction. The sampling time was either 5 s or 10 s, depending on the settings at the specific period. The MRR produces standard outputs like radar reflectivity, doppler velocity, etc., and additional information can be found [here](https://metek.de/de/product/mrr-2/).

mountain

display_name: mountain

precipitation

display_name: precipitation

raclets

display_name: raclets

radar

display_name: radar

rain

display_name: rain

snow

display_name: snow

en: Snow Drift Station - Micro Rain Radar


maintainer: Lisa Hülsmann

en: mortality-models fagus-sylvatica forest-reserves tree-mortality forest-inventory primeval-forests

en: Ukrainian data

en:
READ ME for

Hülsmann L, Bugmann H, Commarmot B, Meyer P, Zimmermann S, Brang P
Data from: Does one model fit all? Patterns of beech mortality in natural forests of three European regions.
Ecological Applications http://dx.doi.org/10.5061/dryad.h4s6t

Forest inventory data of beech for the development of individual-tree mortality models from strict forests reserves in Switzerland, Germany and Ukraine.

The data package provides the files
CH_reduced: inventory data of the reduced dataset from Switzerland that was used to assess the influence of additional environmental and stand characteristics on beech mortality
CH: inventory data from strict forest reserves in Switzerland
DE: inventory data from strict forest reserves in Germany
UA: inventory data from a primeval beech forest in Ukraine

A set of three consecutive inventories was used to generate records for the calibration of mortality models based on trees that were alive in the first and second inventory and either dead or alive in the third inventory.
Diameter at breast height: dbh (mm)
Annual relative basal area increment: relBAI (), calculated based on the first and the second dbh measurement as the compound annual growth rate of the trees basal area (Bigler and Bugmann 2004)
Status of the tree: y, 0 = alive, 1 = dead
Length of the mortality period: dt (years)

Additional environmental and stand characteristics were derived for the reduced Swiss dataset.
Note the varying seasonal level of the covariates considering the entire year, the growing season from April to September (G) and the winter month January to March (W).
All climatic covariates were calculated for both the ‘growth’ (2) and the ‘mortality’ period (3). The stand covariates were derived for the second inventory of each record (2).

Mean diameter at breast height: dbh.mean.2 (mm)
Interquartile range of diameter at breast height: dbh.IQR.2 (mm)
Median diameter at breast height: dbh.median.2 (mm)
Basal area per hectare: BA.2 (m2 ha-1)
Number of trees per hectare: N.2 (ha-1)
pH-value: pH ()
Available water capacity in the soil: AWC (mm)
Mean annual precipitation sum: P.2, P.3 (mm)
Mean precipitation sum during growing season: PG.2, PG.3 (mm)
Mean annual air temperature: mT.2, mT.3 (°C)
Mean air temperature during growing season: mTG.2, mTG.3 (°C)
Mean air temperature during winter months: mTW.2, mTW.3 (°C)
Mean growing degree-days: GDD.2, GDD.3 ()
Mean number of months during growing season with water deficit: mDEFdurG.2, mDEFdurG.3 ()
Mean annual maximum water deficit: mDEFmax.2, mDEFmax.3 (mm)
Overall maximum of the annual maximum water deficit: maxDEFmax.2, maxDEFmax.3 (mm)
Mean of cumulative water deficit during growing season: mDEFcumG.2, mDEFcumG.3 (mm)
Overall maximum of cumulative water deficitduring growing season: maxDEFcumG.2, maxDEFcumG.3 (mm)
Percentage of years with at least one month water deficit: percDEF.2, percDEF.3 (%)

mimetype: text/csv

en: German data

en: Swiss data full

en: Swiss data reduced

en:
The datasets comprise nearly 19’000 trees of European beech (_Fagus sylvatica_ L.) from unmanaged forests in Switzerland, Germany / Lower Saxony and Ukraine. Tree death was modelled as a function of size and growth, i.e., stem diameter (DBH) and relative basal area increment (relBAI). To explain the spatial and temporal variability in mortality patterns, we considered a large set of environmental and stand characteristics.

 Inventory data
The strict forest reserves in Switzerland and Germany had been established in the period of 1961-1975 and 1971-1974, respectively. Every reserve included up to 10 permanent plots ranging from 0.09 to 1.8 ha in size, with slightly irregular re-measurement intervals. Permanent plots with pure or mixed beech stands were selected from the reserves of both networks. Reserves with considerable wind disturbance during the monitored intervals were excluded from the analysis. In addition to data from the Swiss and German reserves, data from a 10 ha plot in the primeval beech forest Uholka in Western Ukraine including three remeasurements were used. The inventory data provide diameter measurements at breast height (dbh) for revisited trees with a diameter of more than 4, 7 and 6 cm for Switzerland, Germany and Ukraine, respectively.

 Mortality predictors
A set of three consecutive inventories was used to generate records for the calibration of mortality models based on trees that were alive in the first and second inventory and either dead or alive in the third inventory. As an explanatory variable, the annual relative basal area increment (relBAI) was calculated based on the first and the second dbh measurement as the compound annual growth rate of the trees basal area. Tree dbh in the second inventory was used in addition to relBAI to model tree status (alive or dead) of the third inventory.

To increase the generality of the mortality models, we selected environmental variables that are known to have a considerable influence on growth and mortality of beech. We emphasized the effects of water availability using a large set of drought characteristics that were calculated based on the local site water balance. We also related beech mortality to soil pH, temperature, precipitation and growing degree-days. Additionally, we considered stand characteristics that reflect the development stage, competition and structure of the forests.

 Further information
For further information, refer to Hülsmann _et al_. (2016) Does one model fit all? patterns of beech mortality in natural forests of three European regions. _Ecological Applications_.

fagus-sylvatica

display_name: fagus-sylvatica

forest-inventory

display_name: forest-inventory

forest-reserves

display_name: forest-reserves

mortality-models

display_name: mortality-models

primeval-forests

display_name: primeval-forests

tree-mortality

display_name: tree-mortality

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data from: Does one model fit all? patterns of beech mortality in natural forests of three European regions


maintainer: Brian W. McArdell

en: debris-flow monitoring-station illgraben magnitude force-plate

en: Illgraben debris-flow characteristics 2023

en:
List of key debris flow variables from the WSL Illgraben monitoring station (2023) such as occurrence date and time, peak flow depth, peak flow velocity, total volume and bulk density.
This table contains values based on our current analysis methods. The list will be updated annually after each debris flow season, and as our methods continue to improve, individual values may change slightly in the future.

debris-flow

display_name: debris-flow

force-plate

display_name: force-plate

illgraben

display_name: illgraben

magnitude

display_name: magnitude

monitoring-station

display_name: monitoring-station


en: python snow pattern-formation numerical-model vapor-transport

en:
Data and code v1.0 downloaded from the git.

Running the code requires an installation of FEniCS via docker.

en:
This python code uses the Finite Element library FEniCS (via docker) to solve the one dimensional partial differential equations for heat and mass transfer in snow. The results are written in vtk format.

The dataset contains the code and the output data to reproduce the key Figure 5 from the related publication:

_Schürholt, K., Kowalski, J., Löwe, H.; Elements of future snowpack modeling - Part 1: A physical
instability arising from the non-linear coupling of transport and phase changes, The Cryosphere, 2022_

The code and potential updates can be accessed directly through git via:

https://gitlabext.wsl.ch/snow-physics/snowmodel_fenics

numerical-model

display_name: numerical-model

pattern-formation

display_name: pattern-formation

python

display_name: python

vapor-transport

display_name: vapor-transport

en: A numerical solver for heat and mass transport in snow based on FEniCS


en: sankt-annafirn glacier dsm orthoimage alps griesgletscher drone orthophoto findelengletscher dem uav gletscher

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Griesgletscher on the 3rd of August 2015.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Findelengletscher on the 09th of April 2015.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Griesgletscher on the 13th of September 2016.

en: This .pdf contains an orthoimage for each dataset as well as a Table which displays the number of flights made, image acquired, number of GCP set and the total area covered.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Findelengletscher on the 19th of April 2016.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Findelengletscher on the 21th of July 2015.

en: This folder contains all UAV flights paths that we created for the Sankt Annafirn, the Findelengletscher and Griesgletscher. They have been created with the software eMotion2, that was developped for the eBee platform from Sensefly.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Sankt Annafirn on the 15th of April 2015.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Findelengletscher on the 30th of August 2016.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Findelengletscher on the 2nd of July 2016.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Sankt Annafirn on the 15th of July 2015.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Griesgletscher on the 15th of August 2015.

en: Bulk Data Access

en: Link to the S3 bucket where all the data resources can be downloaded in bulk

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Griesgletscher on the 26th of September 2015.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Sankt Annafirn on the 28th of September 2015.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Findelengletscher on the 15th of September 2015.

en:
This .zip folder contains:

 - An orthoimage (oi) of 0.1m resolution

- A Digital Surface Model (dsm) of 0.1m resolution

- The Agisoft Photoscan automatic processing report

for the UAV field campaign conducted on the Findelengletscher on the 22th of September 2016.

en:
 UAV-derived DSMs and orthoimages

Unmanned Aerial Vehicle (UAV) surveys were conducted between 2015 and 2016 on the Sankt Annafirn, Findelen- and Griesgletscher, situated in the Swiss Alps. Three surveys at the Sankt Annafirn allowed for a full glacier coverage, four surveys at Griesgletscher allowed an almost full glacier coverage and seven surveys at Findelengletscher allowed for a partial coverage of the glacier tongue (see individual datasets for exact extent). For each survey, a high resolution orthoimage and a Digital Surface Model (DSM) was created.

 UAV surveys:

Prior flight, Ground Control Points (GCPs) were deployed on the glacier surface and measured with a differential GPS (Trimble R7 or Leica GPS 1200). They allowed precise georeferencing of the UAV-derived datasets. UAV flight plans were planned with the software *eMotion 2* and a SenseFly eBee was used as surveying platform. The images were then processed with the software Agisoft Photoscan Pro 1.1.6 .

The location and dates of each survey can be found in the table together with the number of flights performed (Nflights), the number of acquired images (Nimages), the number of GCPs set (NGCPs) and the surveyed area.

A folder for each dataset is available (see folder name in table), which contains:

- An orthoimage *glacier_date_photoscan_oi_CH1903+_LV95_0.1m.tif*

- A Digital Surface Model *glacier_date_photoscan_dsm_CH1903+_LV95_0.1m.tif*

- The Agisoft Photoscan automatic processing report  *glacier_date_photoscan_report.pdf*

where:

- *glacier* is the name of the surveyed glacier

- *date* is the date of the UAV image acquisition

- *photoscan* is the name of the photogrammetric software

- *oi* or *dsm* the type of dataset

- *CH1903+_LV95* is the coordinate system and datum of the dataset

- *0.1m* is the resolution of the dataset in meter

- *.tif* is the extention of the dataset

Details about the UAV surveys, the image processing and the accuracy of the UAV-derived products can be found in this publication below.

Paper Citation:
 > _Gindraux et al. 2017. Accuracy Assessment of Digital Surface Models from Unmanned Aerial Vehicles’Imagery on Glaciers, Remote Sensing, 9, 186, 1-15, [doi: 10.3390/rs9020186](https://doi.org/10.3390/rs9020186)._

The folder UAV_flight_paths.zip contains all UAV flights performed on the Sankt Annafirn, Findelengletscher and Griesgletscher. The flights were planned with the software eMotion2 and have the .afp extention.

alps

display_name: alps

dem

display_name: dem

drone

display_name: drone

dsm

display_name: dsm

findelengletscher

display_name: findelengletscher

glacier

display_name: glacier

gletscher

display_name: gletscher

griesgletscher

display_name: griesgletscher

orthoimage

display_name: orthoimage

orthophoto

display_name: orthophoto

sankt-annafirn

display_name: sankt-annafirn

uav

display_name: uav

en: UAV-derived Digital Surface Models and orthoimages for three alpine glaciers


en: moose lichens bryolich flechten garten diversitat bryophytes

en: Im Rahmen des Bryolich-Projekts “Moose und Flechten in Gärten” wurden möglichst vollständige Artenlisten von Moosen und Flechten in 26 bzw. 7 Gärten um Wohnhäuser erstellt. In 5 dieser Gärten wurden beide Artengruppen erfasst. Zusätzlich wurden Informationen über unterschiedliche Lebensräume innerhalb der Gärten (z.B. Fläche mit Gehölzen, Fläche von Blumenbeeten) und weitere Garten-Charakteristika (z.B. Fläche des Gartens, Alter des Gartens, Einsatz von Dünger) erfasst. Details zum Projekt und den erfassten Daten können im zugehörigen Artikel (Bergamini et al. 2024) und auf der Webseite von Bryolich gefunden werden (https://www.bryolich.ch/mfig/mfig_de.html).

bryolich

display_name: bryolich

bryophytes

display_name: bryophytes

diversitat

display_name: diversitat

flechten

display_name: flechten

garten

display_name: garten

lichens

display_name: lichens

moose

display_name: moose

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Daten Bryolich-Projekt Moose und Flechten in Gärten


maintainer: Alexis Shakas

en: irrigation pinus-sylvestris drought ert drone-data

en: This zip file contains all raw and processed data for the electrical resistivity and drone campaigns that took place in Pfynwald, 2022

en: This .csv file contains the soil water potential data for all treatments (irrigation, irrigation-stop and control) and for the whole year of 2022. The data is given as a mean value and with an upper and lower uncertainty bound, given from the manufacturer. The depth of the sensor is given in cm, and the measured values are in units of kPa.

en:
This collection of datasets consists of various measurements taken during the year 2022 in Pfynwald. It combines 2 electrical resistivity transects which were monitored in May and July, before and after the irrigation season. The transects transverse all treatments (irrigation, control, irrigation stop). Each transect was repeated twice during the day for a period of 3 days to a week.
In addition there are raw and post-processed drone images (and resulting PRI maps), which were used to compare the below ground responses (from resistivity) to the above ground (crown) stress.
Here, the raw data is stored and a link to a git project is provided where python code is stored to reproduce all the results the published manuscript: "Does optimality partitioning theory fail for belowground traits? Insights from geophysical imaging of a drought-release experiment in a dry Scots Pine forest", New Phytologist, Shakas et al., 2024. The in-depth explanations from each processing step are found in the code (git project).

drone-data

display_name: drone-data

drought

display_name: drought

ert

display_name: ert

irrigation

display_name: irrigation

pinus-sylvestris

display_name: pinus-sylvestris

en: Pfynwald Geoelectric Experiment 2022


root-traits

maintainer: Ivano Brunner

title_for_slug: root-traits

en: fine-root-traits ingrowth-cores belowground-biomass soil-coring drought

en: Root-traits

en:
Fine-root traits of Scots pine in response to enhanced soil water availability deriving from long-term irrigation in the Pfynwald

Data_Fig.1.xlsx
Fine-root biomass of the topsoil (0-10 cm) in the dry and irrigated treatment of the Scots pine forest of the years 2003 to 2016 recorded by soil coring

Data_Tab1+2_2005.xlsx
Fine-root traits from roots of ingrowth cores from 2005 after two years of growth in the dry and irrigated treatment of the Scots pine forest

Data_Tab1+2_2016.xlsx
Fine-root traits from roots of ingrowth cores from 2016 after two years of growth, and from roots of the soil-coring sampling from 2016 in the dry and irrigated treatment of the Scots pine forest

belowground-biomass

display_name: belowground-biomass

fine-root-traits

display_name: fine-root-traits

ingrowth-cores

display_name: ingrowth-cores

soil-coring

display_name: soil-coring


en: gridded-data antarctica depth-of-snowfall terrestrial-laser-scans terrestiral-laserscanning

en: Deprecated: Scan from 11 January 2019, 10 cm resolution, version 1

en: This resource is deprecated. It contains erroneous data.

en: Scan from 21 December 2018, 1 mm resolution

en: Scan from 27 December 2018, 10 cm resolution

en: Scan from 4 January 2019, 10 cm resolution

en: Scan from 21 December 2018, 10 cm resolution

en: Scan from 11 January 2019, 10 cm resolution, version 2

en: Scan from 2 January 2019, 10 cm resolution

en: Scan from 27 December 2018, 1 mm resolution

en: Scan from 11 January 2019, 1 mm resolution

en: Scan from 2 January 2019, 1 mm resolution

en: Scan from 4 January 2019, 1 mm resolution

en:
Surface topography maps (spatial extent: 400 m x 400 m) obtained at approximately 300 m from the top of the Hammarryggen Ice Rise in Dronning Maud Land, East Antarctica, using a Riegl VZ-6000 Terrestrial Laser Scanner (TLS). Scans were obtained on 5 days in the 2018-2019 Austral summer: on December 21 and 27, and January 2, 4 and 11. By using reflectors installed on bamboo poles, scans were registered with respect to the reflectors, such that the difference between two successive scans reveals the spatial patterns of erosion and deposition of snow. On each scan day, we used multiple scan positions to create one combined point cloud. After applying an octree filter on the point cloud, a 3D surface was obtained. For each day, the dataset contains a 1 mm and a 10 cm octree filter resolution file, only including points in a 400 m x 400 m area centered around the scan positions.

Notes:

* All files in the dataset are in the same coordinate system. However, this coordinate system is arbitrary (i.e., not related to any global coordinate system).

* From the installed reflectors, 4 reflectors could be used over the full period. The scan accuracy is generally higher within the area enclosed by the reflectors.

* The scans from January 2 were found to have exhibited small tilt during the scan and are of lesser accuracy.

* By walking along fixed corridors, disturbance of the snow was limited.

antarctica

display_name: antarctica

depth-of-snowfall

display_name: depth-of-snowfall

gridded-data

display_name: gridded-data

terrestiral-laserscanning

display_name: terrestiral-laserscanning

terrestrial-laser-scans

display_name: terrestrial-laser-scans

en: Terrestrial laser scans on Hammarryggen Ice Rise, Dronning Maud Land, East Antarctica


en: forest-inventory unmanned-aerial-vehicle-laser-scanning terrestrial-laser-scanning structure-from-motion lidar 3d-point-cloud terrestrial-photogrammetry mobile-laser-scanning

en:
Close Range Remote Sensing Benchmark for different LiDAR and photogrammetric Sensors in a mixed temperate forest.
Benchmarks are needed to evaluate the performance of different close-range remote sensing devices and approaches, both in terms of efficiency as well as accuracy. In this study we evaluate the performance of two terrestrial (TLS), one handheld mobile (PLS) and two drone based (UAVLS) laser scanning systems to detect trees and extract the diameter at breast height (DBH) in three plots with a steep gradient in tree and understorey vegetation density. As a novelty, we also tested the acquisition of 3D point-clouds using a low-cost action camera (GoPro) in conjunction with the Structure from Motion (SfM) technique and compared its performance with those of the more costly LiDAR devices.

forest-inventory

display_name: forest-inventory

lidar

display_name: lidar

mobile-laser-scanning

display_name: mobile-laser-scanning

structure-from-motion

display_name: structure-from-motion

terrestrial-laser-scanning

display_name: terrestrial-laser-scanning

terrestrial-photogrammetry

display_name: terrestrial-photogrammetry

unmanned-aerial-vehicle-laser-scanning

display_name: unmanned-aerial-vehicle-laser-scanning

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Ramerenwald Close Range Remote Sensing Benchmark


en: lidar alpine3d lee-side-flow-field tls preferential-deposition

en: Dataset

en:
The data presented here corresponds to the publication "A Close-Ridge Small-Scale Atmospheric Flow Field and its Influence on Snow Accumulation" (Gerber et al., 2017), which investigates an eddy-like structure in the vicinity of the Sattelhorn in the Dischma valley (Davos Switzerland) and its influence on snow accumulation. The dataset contains:

* Alpine3D: Alpine3D snow depth grids (25 m resolution) for two simulations with and without snow redistribution.
* ARPS: 10 ARPS simulations (25 m horizontal resolution) with different model setups (wind direction, wind speed, stability).
* LiDAR: Processed LiDAR PPI (D2_PPI_1h) and RHI (D2_cross_1h) across the valley with a hourly resolution for the period 27 October 2015 01:00 - 29 October 2015c 21:00 (spatial resolution: 25 m).
* meteostations-dischma: Meteorological station data of two meteorological stations in the Dischma valley with 10 minute resolution for the period 28 October 2015 - 30 October 2015.
* TLS: Snow depth change data (m) between 28 October 2015 and 30 October 2015 based on terrestrial laser scans.

For more details about the simulation and observation data, see Gerber et al., 2017.

Publication: Gerber et al., 2017: A Close-Ridge Small-Scale Atmospheric Flow Field and its Influence on Snow Accumulation, submitted to JGR - Atmospheres.

lee-side-flow-field

display_name: lee-side-flow-field

preferential-deposition

display_name: preferential-deposition

tls

display_name: tls

en: DISCHMEX - Observations and simulations of the close-ridge small-scale atmospheric flow field and snow accumulation at Sattelhorn, Dischma valley, Davos, Switzerland.


en: ecosystem-functioning soil-biodiversity invasive-species herbivory grassland

en: Summary counts and moisture adjustments for Baermann extracted nematode samples

en: Summary table of pitfall-trap collected invertebrates.

en: Earthworms counts and biomass for each sampling site

en: ASV table of fungal communities. Each column is a sampling site

en: FunGuildR derived ecological profiles of fungal communities

en: PICRUSt2 derived inferred pathways for bacterial communities

en: ASV table of nematode communities

en: Summary of sensor-collected soil moisture and temperature data

en: PICRUSt2 derived functional profiles of bacterial communities

en: Summary of collected biomass data. Each row is the average of 2 20 by 100 cm strips.

en: ASV table of 16s (bacteria) communities. Columns are sampling sites, rows ASVs

en: Summary of chemical and physical parameters. Each row is a sampling site

en: Metadata and treatment information for each of the sampling sites

en:
Dataset supporting the paper "Herbivory mediates the response of below-ground food-webs to invasive grasses", published in the Journal of Animal Ecology.
The dataset refers to samples collected across 6 farms in the Bega Valley region of Australia. The farms are located in the grassy woodland ecoregion and are extensively managed with sheep and cattle grazing. Livestock shares the landscape with native mammalian and invertebrate herbivores. On each farm, two nested fenced exclosure systems were established. These included an open area, a fence excluding livestock but allowing access to native mammals and invertebrates, a fence excluding all mammals but allowing access to invertebrates and a shielded cage excluding all invertebrate herbivores as well. In each farm, one of these systems was located in a zone dominated by the native Kangaroo grass, and another in a zone co-dominated by the Invasive African lovegrass. The sample and treatment numbering is provided in the file Sample_metadata.
Soil samples were taken and DNA was extracted and amplified for 16s and ITS markers. The resulting metabarcoding derived ASV tables are presented (16s_ASV_table and ITS_ASV_table), as are the inferred functional profiles for bacteria at the enzyme and pathway level (16s_picrust_enzymes and 16s_picrust_pathways), as derived by the PICRUSt2 pipeline, and the fungal guilds reconstructed with FunGuildR (FunguildR_output).
Chemical, physical and enzymatic assays were also performed on the soil samples (Chemical_data).
Nematodes were extracted from soil cores with a Baermann funnel, counted (Nematodes_counts) and had their DNA extracted and amplified (Nematodes_asv_table). Soil invertebrates were sampled with below-ground pitfall traps and identified to family level (Invertebrates) and earthworms were manually extracted from 20*20*20 cm monoliths ((Earthworm_counts).
Two 20 by 100 cm strips had their vegetation removed and their living and litter biomass quantified by dry weight (Biomass_summary). Sensors measuring moisture and temperature 10 cm beneath the soil surface were installed in each plot and their output is presented in Microclimate_summary.

ecosystem-functioning

display_name: ecosystem-functioning

grassland

display_name: grassland

herbivory

display_name: herbivory

invasive-species

display_name: invasive-species

soil-biodiversity

display_name: soil-biodiversity


maintainer: Felix Gugerli

en: monitoring genetic-diversity melanargia-galathea genetic-structure conservation-genetics

en:
Individual genotypes assessed at six nuclear microsatellite loci (two alleles per locus) for individuals of the butterfly Melanargia galathea (Marbled white) that were collected throughout Switzerland, along the regular grid of the Biodiversity Monitoring (BDM) of Switzerland. For each individual, the sampling site (number) and the genotype are given. Note that due to privacy restrictions, the original geographic coordinates remain disclosed. For original coordinates, data holders should be contacted (Swiss Federal Office for the Environment; Biodiversity Monitoring Switzerland).
The data refer to the following publication: Terzer et al., Distinct spatial patterns of genetic structure and diversity in the butterfly Marbled White (Melanargia galathea) inhabiting fragmented grasslands. Conservation Genetics, https://doi.org/0.1007/s10592-023-01593-4.

conservation-genetics

display_name: conservation-genetics

genetic-diversity

display_name: genetic-diversity

genetic-structure

display_name: genetic-structure

melanargia-galathea

display_name: melanargia-galathea

monitoring

display_name: monitoring

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Nuclear microsatellite genotypes of the butterfly Melanargia galathea


sensitivity-of-modeled-snow-instability

maintainer: Bettina Richter

title_for_slug: sensitivity-of-modeled-snow-instability

en: snow-cover-modeling numerical-avalanche-forecasting global-sensitivity-analysis snowpack snow-instability

en: Case WL

en: Extracted output data for case ALL. Here biases were introduced to meteorological input data during the period of weak layer formation. Data include quasi random biases, which were introduced, extracted output of simulated snow profiles and sobol indices for each output variable.

en: Reference run

en: Reference run for the sensitivity analysis at Weissfluhjoch field site for winter season 2016-2017. Meteorological data from the automatic weather stations are used. No biases were introduced to the input data.

en: Manually observed snow profiles

en: Manually observed snow profiles at Weissfluhjoch field site for winter season 2016-2017, including layer depth, hand hardness, grain size and grain shape for each layer.

en: Case ALL

en: Extracted output data for case ALL. Here biases were introduced to meteorological input data during the whole simulation period. Data include quasi random biases, which were introduced, extracted output of simulated snow profiles and sobol indices for each output variable.

en: Case SL

en: Extracted output data for case SL. Here biases were introduced to meteorological input data during the period of slab formation. Data include quasi random biases, which were introduced, extracted output of simulated snow profiles and sobol indices for each output variable.

en: We investigated the sensitivity of modeled snow instability to meteorological input data using SNOWPACK. We therefore used input data from the automatic weather station at the Weissfluhjoch field site for the year 2016-2017. We investigated three scenarios and performed 14'000 simulations for each scenario. The dataset contains extracted output data from modeled SNOWPACK simulations, including setup files to reproduce the simulations. For further information read the README file.

global-sensitivity-analysis

display_name: global-sensitivity-analysis

numerical-avalanche-forecasting

display_name: numerical-avalanche-forecasting

snow-cover-modeling

display_name: snow-cover-modeling

snow-instability

display_name: snow-instability

snowpack

display_name: snowpack

en: Sensitivity of modeled snow instability


historical-vegetation-height-model-nfi

maintainer: Mauro Marty

title_for_slug: historical-vegetation-height-model-nfi

en: forest dsm nfi photogrammetry vhm historical

en: 1998-2006 Vegetation Height Model

en: 1990-1998 Vegetation Height Model

en: Description of available data

en: 1985-1991 Vegetation Height Model

en: 1979-1985 Vegetation Height Model

en:
The main datasets available are 4 nationwide **Digital Surface Models (DSMs)** and corresponding **Vegetation Height Models (VHMs)** with a spatial resolution of 1 m.
The Vegetation Height Models are calculated by subtraction of a Digital Terrain Model (swissAlti3d version 2017, swisstopo) from the generated DSMs. DSMs were derived by image matching of **scanned historical images** (panchromatic 8-bit) acquired with a RC10 frame camera, in the context of the swisswide image acquisition campaigns of swisstopo.
Nationwide products could be generated for the **four epochs**
 1979-1985 / 1985-1991 / 1990-1998 / 1998-2006.
Additional information about successful image matching vs. interpolation of pixels and about the year of image acquisition are available in the corresponding files (**matched_area_xxxx_xxxx_binay.tif** and **meta_acquisition_year_xxxx_xxxx.json**, respectively).
To separate vegetation from non-vegetation areas a mask derived from a combination of information of the Topographic landscape model - TLM (swisstopo) and a NDVI layer was used and is supplied as **"TLM_mask.tif"**
Due to the occurrence of unrealistic vegetation height values caused by the failure of the image matching process (mainly overexposed images and clouds or very steep rocky terrain), pixel values > 60 m were set to NoData and < 0 m to 0.
All datasets are available in the Reference System **LV95 (EPSG: 2056) LN02 (EPSG: 5728)** and share the common **extent definition** (xmin ymin xmax ymax): 2480000 1070000 2840000 1300000

dsm

display_name: dsm

forest

display_name: forest

historical

display_name: historical

nfi

display_name: nfi

photogrammetry

display_name: photogrammetry

vhm

display_name: vhm

educ

en: Education, culture and sport

en: Historical Vegetation Height Model NFI


maintainer: Joan Casanelles Abella

en: hylaeus-communis dna-metabarcoding osmia-cornuta trap-nest chelostoma-florisomne cavity-nesting-bees plant-pollinator-interactions osmia-bicornis paris urban-ecology tartu antwerp zurich poznan

en: Explanation data variables

en: Larval food composition

en: Information on the study sites

en: For each site, IDs, city, coordinates, structure where trapnest was attahced and height of the trapnest is provided

en: Urbanization poses threats and opportunities for the biodiversity of wild bees. A main gap relates to the food preferences of wild bees in urban ecosystems, which usually harbour large numbers of plant species, particularly at the larval stage. This data sets describes the larval food of four wild bee species (i.e. Chelostoma florisomne, Hylaeus communis, Osmica bicornis and Osmia cornuta) and three genera (i.e. Chelostoma sp., Hylaeus sp, and Osmia sp.) common in urban areas in five different European cities (i.e. Antwerp, Paris, Poznan, Tartu and Zurich). This data results from a European-level study aimed at understanding the effects of urbanization on biodiversity across different cities and citiscapes, and a Swiss project aimed at understanding the effects of urban ecosystems in wild bee feeding behaviour. Wild bees were sampled using standardized trap-nests in 80 sites (32 in Zurich and 12 in each of the remaining cities), selected following a double gradient of available habitat at local and landscape scales. Larval pollen was obtained from the bee nests and identified using DNA metabarconding. The data provides the plant composition at the species or genus level of the different bee nests of the studied species in the studied sites of the five European cities. For Hylaeus communis, this is the first study in reporting larval food composition.

antwerp

display_name: antwerp

cavity-nesting-bees

display_name: cavity-nesting-bees

chelostoma-florisomne

display_name: chelostoma-florisomne

dna-metabarcoding

display_name: dna-metabarcoding

hylaeus-communis

display_name: hylaeus-communis

osmia-bicornis

display_name: osmia-bicornis

osmia-cornuta

display_name: osmia-cornuta

paris

display_name: paris

plant-pollinator-interactions

display_name: plant-pollinator-interactions

poznan

display_name: poznan

tartu

display_name: tartu

trap-nest

display_name: trap-nest

urban-ecology

display_name: urban-ecology

zurich

display_name: zurich

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Larval food composition of four wild bee species in five European cities


en: indian-ocean landscape landscape-evolution landscape-genetics reef-fish morphology

en:
Tropical reef fishes exhibit a large disparity of organismal morphologies contributing to their astonishing biodiversity. Morphological disparity, scaling from differences among individuals within populations to differences among species, is governed by ecological and evolutionary processes.
Here, we examined the relationship between intra- and interspecific disparity in 1111 individuals from 17 tropical reef fish species, representing 10 families with different dispersal abilities, across four Indian Ocean regions. We compared intraspecific measurements with species-level measures from a database of 1061 reef fish species. Species with high morphological disparity among individuals from distinct regions are found to be nested in families that display a high disparity among their genera. We show an association between the morphological disparity at the intra- and interspecific levels for several morphological ratios such as the caudal peduncle elongation. We evaluated the link between morphological disparity and genetic diversity with species dispersal ability. A structural equation model indicates that dispersal ability correlates positively with species genetic diversity, which is associated with morphological disparity.
Our results suggest that traits associated with dispersal may foster gene flow and morphological evolution. However, future works combining genomic, morphological and environmental data across more species is necessary to generalize these findings to other regions.

indian-ocean

display_name: indian-ocean

landscape

display_name: landscape

landscape-evolution

display_name: landscape-evolution

landscape-genetics

display_name: landscape-genetics

morphology

display_name: morphology

reef-fish

display_name: reef-fish

en: Continuity in morphological disparity in tropical reef fishes across evolutionary scales


maintainer: Jan Magnusson

en: dischma snow cryosphere hydrology modelling inarch

en: Dischma dataset - v20241219

en: The .zip file contains all data as described in this repository and associated publication. The .zip file contains a readme file describing its content in detail.

en:
This repository contains data from the alpine Dischma watershed and its surroundings in eastern Switzerland and includes: (a) hourly hydrometeorological data with 100m spatial resolution, (b) remotely sensed snow depth data with 100m spatial resolution obtained at peak of winter, and (c) station measurements of variables such as snow depth and catchment runoff.
This dataset is particularly suited for (a) different simulation experiments using distributed and process-based models, including physics-based snow and hydrological models, (b) testing various snow data assimilation schemes, and (c) developing models representing snow-forest interactions.
The dataset is described in detail in:
Magnusson, J., Bühler, Y., Quéno, L., Cluzet, B., Mazzotti, G., Webster, C., Mott, R., and Jonas, T.: High-resolution hydrometeorological and snow data for the Dischma catchment in Switzerland, Earth Syst. Sci. Data Discuss. [preprint], https://doi.org/10.5194/essd-2024-374, in review, 2024.
This dataset was published within the INARCH project:
https://inarch.usask.ca/

cryosphere

display_name: cryosphere

dischma

display_name: dischma

hydrology

display_name: hydrology

inarch

display_name: inarch

modelling

display_name: modelling

snow

display_name: snow

en: A high-resolution snow and hydrometeorological dataset for the Dischma region in Switzerland


en: snow-cover vertical-wind-motion boundary-layer-winds snow-depth saltation

en: Data Compilation

en: Compressed TXT files

en:
The data correspond to the experiments presented and discussed in a paper regarding the interaction between turbulent wind fluctuations and snow saltation mass-fluxes (Paterna, 2016). Each of the nine data files corresponds to a different experiment presented in the paper and conducted in the winter 2014/2015 in the WSL/SLF cold wind tunnel in Davos. For each file the five columns indicate the time from the beginning of the experiment, the streamwise (u’) and the vertical (w’) wind velocity fluctuations, the streamwise (qx) and the vertical (qz) snow mass-flux components. From these time-series the scales of the snow saltation and of the turbulent flow are obtained with respect to the eddy-cycles and snow saltation cycles. From spectral analysis of the time-series a decoupling of the snow saltation from the turbulence forcing reveals two regimes of interaction: a turbulence-dependent regime occurring with weak saltation, and a turbulence-independent regime with strong saltation. Further details can be found at the link below.

Publication http://onlinelibrary.wiley.com/doi/10.1002/2016GL068171/abstract

boundary-layer-winds

display_name: boundary-layer-winds

saltation

display_name: saltation

snow-cover

display_name: snow-cover

snow-depth

display_name: snow-depth

vertical-wind-motion

display_name: vertical-wind-motion

educ

en: Education, culture and sport

en: Wind tunnel measurement data of drifting snow and turbulent wind fluctuations


en: zurich floral-resources paris poznan antwerp urban plants floral-inventories angiospermae tartu

en: Floral units, mean number of flowers per floral unit and floral abundance of the different plants counted in quadrats in the study sites in Zurich during the four sampling periods

en: List of plant species sampled in the five cities (Antwerp, Paris, Poznan, Tartu and Zurich) during the different sampling perionds (four for Zurich, three for the other cities) with their frequency (oc1-oc16) within a 100 m radius

en: Trait values for the sampled plants

en: Data of a survey of flowering plants in 80 sites in five European cities and urban agglomerations (Antwerp, Belgium; greater Paris, France; Poznan, Poland; Tartu, Estonia; and Zurich, Switzerland) sampled between April and July 2018.

angiospermae

display_name: angiospermae

antwerp

display_name: antwerp

floral-inventories

display_name: floral-inventories

floral-resources

display_name: floral-resources

paris

display_name: paris

plants

display_name: plants

poznan

display_name: poznan

tartu

display_name: tartu

urban

display_name: urban

zurich

display_name: zurich

envidat

en: EnviDat: the Environmental Data Portal

en: Flowering Plants (Angiospermae) in Urban Green Areas in five European Cities


maintainer: Thomas Wohlgemuth

en: pairwise-stand-comparisons biodiversity forest-management biogeography soil-impacts

en: headers

en: Description of headers for data_wohlgemuth_etal_Neobiota_2022

en: Baseline data

en: references

en: Bibliography of all references cited in data_wohlgemuth_etal_Neobiota_2022.

en: Compiled data on the impacts of seven important NNTs (Acacia dealbata, Ailanthus altissima, Eucalyptus globulus, Prunus serotina, Pseudotsuga menziesii, Quercus rubra, Robinia pseudoacacia) on physical and chemical soil and biodiversity in Europe, and summarise commonalities and differences. A total of 107 publications considered, studies referred to biodiversity attributes and soil properties: 2804 lines and 30 rows.

biodiversity

display_name: biodiversity

biogeography

display_name: biogeography

forest-management

display_name: forest-management

pairwise-stand-comparisons

display_name: pairwise-stand-comparisons

soil-impacts

display_name: soil-impacts

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Impact of non-native tree species in Europe on soil properties and biodiversity: a review