en: urban-transformations europe strategic-projects spatial-planning strategic-spatial-planning land-use-change large-scale-urban-development-projects land-use-transformations

en: QCA data set large-scale urban development projects

en: Please refer to the sections: 3. The data set lsUDPs: 3.1 Selection of cases and data collection; 3.2 Data management and operationalization in the Metadata for further details on this resource.

en: QCA R script large-scale urban development projects Europe

en:
For the set up of this R script, we used the “QCA” (Duşa, 2019) and “SetMethods” (Oana and Schneider, 2018) R packages.

The following further resources were also used:
Dusa, A. (2019). QCA with R: A comprehensive resource. Springer: Berlin.
Schneider, C. Q., & Wagemann, C. (2012). Set-theoretic methods for the social sciences. A guide to qualitative comparative analysis. Cambridge: Cambridge University Press.
Thomann, E., Oana, I.-E., & Wittwer, S. (2018). Performing fuzzy- and crisp set QCA with R. A user-oriented beginner's guide. Retrieved from http://www.evathomann.com/links/qca-r-manual

en:
Table of Content: 1. General context of the data set "lsUDPs" ; 2. Background and aims of the study using the data set lsUDPs; 3. The data set lsUDPs: 3.1 Selection of cases and data collection; 3.2 Data management and operationalisation

1. General context of the data set "lsUDPs"
The data set "lsUDPs" has been generated as part of the CONCUR research project (https://www.wsl.ch/en/projects/concur.html) led by Dr. Anna M. Hersperger and funded by the Swiss National Science Foundation (ERC TBS Consolidator Grant (ID: BSCGIO 157789) for the period 2016-2020. The CONCUR research project is interdisciplinary and aims to develop a scientific basis for adequately integrating spatial policies (in this case, strategic spatial plans) into quantitative land-change modelling approaches at the urban regional level. The first stage (2016-2017) of the CONCUR project focussed on 21 urban regions in Western Europe. The urban regions were selected through a multi-stage strategy for empirical research (see Hersperger, A. M., Grădinaru, S., Oliveira, E., Pagliarin, S., & Palka, G. (2019). Understanding strategic spatial planning to effectively guide development of urban regions. Cities, 94, 96–105. https://doi.org/10.1016/j.cities.2019.05.032 ).

2. Background and aims of the study using the data set lsUDPs
As part of the CONCUR project, a specific task was to examine the relationship between strategic spatial plans and the formulation and implementation (i.e. urban land change) of large-scale urban development projects in Western Europe.
Strategic urban projects are typically large-scale, prominent urban transformations implemented locally with the aim to stimulate urban growth, for instance in the form of urban renewals of deprived neighborhoods, waterfront renewals and transport infrastructures. While strategic urban projects are referred to in the literature with multiple terms, in the CONCOR project we call them large-scale urban development projects (lsUDPs).
Previous studies acknowledged both local and supra-local (or structural) factors impacting the context-specific implementation of lsUDPs. Local governance factors, such as institutional capacity, coordination among public and private actors and political leadership, intertwine with supra-local conditions, such as state re-scaling processes and devolution of state competencies in spatial planning, de-industrialisation and increasing social inequality. Hence, in implementing lsUDPs, multi-scalar factors act in combination.
Because the formulation and implementation of lsUDPs require multi-scalar coordination among coalitions of public and private actors over an extended period of time, they are generally linked to strategic spatial plans (SSPs). Strategic spatial plans convey collective visions and horizons of action negotiated among public and private actors at the local and/or regional level to steer future urban development, and can contain legally binding dispositions, but also indicative guidelines.
The key question remains as to what extent large-scale urban development projects and strategic spatial plans can be regarded as aligned. By alignment, or “concordance”, we mean that strategic projects are formulated and implemented as part of the strategic planning process (“high concordance”), or that the strategic role of projects is reconfirmed in (subsequent) strategic plans (“moderate concordance”). Lack of concordance is found when lsUDPs have been limitedly (or not at all) acknowledged in strategic spatial plans.
We assume that certain local and supra-local factors, characterising the development of the projects, foster (but not strictly “cause”) the degree of alignment between lsUPDs and SSPs. In this study, we empirically examine how, and to what extent, the concordance between 38 European large-scale urban development projects and strategic plans (outcome: CONCOR) has been enabled by five multi-scalar factors (or conditions): (i) the role of the national state (STATE), (ii) the role of (inter)national private actors (PRIVATE), (iii) the occurrence of supra-regional external events (EVENTS), (iv) the degree of transport connectivity (TRANSP), and (v) local resistance from civil society (RESIST). We adopted a (multi-data) case-based qualitative strategy for empirical research and applied the formalised procedure of within- and cross-case comparison offered by fuzzy-set Qualitative Comparative Analysis appropriate for the goal of this study. Based on set theory, QCA formally integrates contextual sensitivity to case specificities (within-case knowledge) with systematic comparative analysis (across-case knowledge).
The research question the data set has been created to reply to is the following: which conditions, and combinations of conditions, enable the concordance between large-scale urban development projects and strategic spatial plans?
The conditions (“independent variables”) considered are. STATE: the set of large-scale urban projects characterized by a high degree of state intervention and support in their formulation and implementation, PRIVATE: the set of large-scale urban projects characterized by a high degree of involvement of (inter)national private actors in their formulation and implementation, EVENTS: the set of large-scale strategic projects whose formulation and implementation have been strongly affected by unforeseen international events and/or global trends, TRANSP: the set of large-scale strategic projects with a high degree of road and/or transit connectivity, and RESIST: set of large-scale strategic projects whose realization has been characterized by resistances that have substantially delayed or modified the project implementation.
The outcome (“dependent variable”) under analysis is CONCOR: the set of large-scale urban projects having a high degree of concordance/alignment/integration with strategic spatial plans

3. The data set lsUDPs

   3.1 Selection of cases and data collection
To generate the current data set on large-scale urban development projects in European urban regions (data set "lsUDPs"), we identified 35 large-scale urban development projects in a sample of the 21 Western urban regions considered in the CONCUR project (see supra, Hersperger et al. 2019): Amsterdam, Barcelona, Copenhagen, Hamburg, Lyon, Manchester, Milan, Stockholm, Stuttgart. The criteria we followed to identify the 35 large-scale urban development projects are: geographical location, size (large-scale), site (located either in the city core or in the larger urban region) and urban function (e.g. housing, transportation infrastructures, service and knowledge economic functions). Employing these criteria facilitated the selection of diverse large-scale urban development projects while still ensuring sufficient comparability.
In 2016, we performed 47 in-depth interviews with experts in urban and regional planning and large-scale strategic projects and infrastructure (i.e. academics and practitioners) about the formulation, implementation and development (1990s–2010s) of each project in each of the 9 selected urban regions. On average, each interviewee answered questions on 3.1 large-scale urban development projects. Three cases were subdivided into two cases because a clear differentiation between specific implementation stages was identified by the interviewees (expansion of the Barcelona airport, cases “bcn_airport80-90” and “bcn_airport00-16”; realisation of Lyon Part-Dieu, cases “lyo_partdieu70-90” and “lyo_partdieu00-16”; MediaCityUK, cases “man_salfordquays80-00” and “man_mediacityuk00-16”). Therefore, from the initial 35 cases, the final number of analysed cases in the lsUDPs dataset is 38.

    3.2 The data set lsUDPs: Data management and operationalisation
Interviews were fully transcribed and analysed through MAXQDA (version 12.3, VERBI GmbH, Berlin, Germany), and intercoder agreement was evaluated on a sample of nine interviews. We also compiled “synthetic case descriptions” (SCD) for each case (totalling more than 160 SCDs) to spot potential inconsistencies among interviewees’ accounts and to facilitate completion of the “calibration table” for each case (see below). An online expert survey distributed to the interviewees (response rate 78%) helped systematise the information collected during the interviews. We also consulted both academic and gray literature on the case studies to check for possible ambiguity and inconsistencies in the interview data, and to solve discrepancies between our assigned set membership scores and questionnaire values. Site visits were also carried out to retrieve additional information on the selected cases.
For each case (i.e. each of the 38 selected large-scale urban development projects), we operationalised each condition (i.e. STATE, PRIVATE, EVENTS, TRANSP, RESIST) and the outcome (CONCOR) in terms of sets, for subsequent application of Qualitative Comparative Analysis. This process is called “calibration”; we used a number of indicators for each condition to qualitatively assess each large-scale project across the conditions. The case-based qualitative assessment was then transformed into fuzzy-set membership values. Fuzzy-set membership values range from 0 to 1, and should be conceived as “fundamentally interpretative tools” that “operationalize theoretical concepts in a way that enhances the dialogue between ideas and evidence” (Ragin 2000:162, in “Fuzzy-set Social Science”. Chicago: University Press). We employed a four-value fuzzy-set scale (0, 0.33, 0.67, 1) to “quantify” into set membership scores the individual histories of cases retrieved from interview data. Only the condition TRANSP was calibrated as a crisp-set (0, 1).
The translation of qualitative case-based information into numerical fuzzy-set membership values was iteratively performed by populating a calibration table following standard practices recently emerged in QCA when dealing with qualitative (interview) data.

europe

display_name: europe

land-use-change

display_name: land-use-change

land-use-transformations

display_name: land-use-transformations

large-scale-urban-development-projects

display_name: large-scale-urban-development-projects

spatial-planning

display_name: spatial-planning

strategic-projects

display_name: strategic-projects

strategic-spatial-planning

display_name: strategic-spatial-planning

urban-transformations

display_name: urban-transformations

en: lsUDPS Large-scale urban development projects in European urban regions


maintainer: EnviDat Support

en: complex-terrain high-resolution cosmo-wrf numerical-simulation meteoswiss

state: active

type: dataset

en: Postprocessing

media_type: application/zip

en: Postprocessing scripts to map WRF output on swiss coordinates (see Section 7 in COSMOWRFdocumentation.pdf)

format: ZIP

mimetype: application/zip

en: WPSrun

en: Scripts to run the WRF pre-processing (WPS) for COSMO-WRF simulation (see Section 5 in COSMOWRFdocumentation.pdf)

en: MeteorologicalData

en: Scripts to process meteorological data (see Section 2 in COSMOWRFdocumentation.pdf).

en: COSMO-WRF documentation v1.0

media_type: application/pdf

en:
Gerber, Franziska; Sharma, Varun (2018). Running COSMO-WRF on very-high resolution over complex terrain. EnviDat. doi:10.16904/envidat.35

Documentation about the procedure to run COSMO-WRF

format: PDF

mimetype: application/pdf

en: WRFrun

en: Scripts to run COSMO-WRF simulation (see Section 6 in COSMOWRFdocumentation.pdf)

en: StaticData

en:
Scripts to process geographical/static data (see Section 3 in COSMOWRFdocumentation.pdf).
- ascii_to_bin_landuse.f90
- ascii_to_bin_soiltype.f90
- ascii_to_bin_topo_wgs84_ws2sf1.f90
- see_slopes.ncl
- soiltype_writing.py
- toposmooth_wgs84_cosmobound.ncl
- write_geogrid.o

en: WPSSetup

en: Scripts that need to be changed to compile WPS (see COSMOWRFdocumentation.pdf, Section 4)

en: This is a technical documentation of the procedure to run the Weather Research and Forecasting (WRF) model over complex alpine terrain using Consortium for Small-Scale Modeling (COSMO) reanalysis by the Federal Office of Meteorology and Climatology (MeteoSwiss) as initial and boundary conditions (COMSO-WRF). The setup is adapted for very high resolution simulations based on COSMO-2 (2.2 km resolution) reanalysis. This document gives an overview over steps to setup COSMO-WRF and adaptations needed to run COSMO-WRF. Additionally, the calculation of precipitation rate at a horizontal plane and remapping COSMO-WRF output on Swiss coordinates are documented.

complex-terrain

display_name: complex-terrain

cosmo-wrf

display_name: cosmo-wrf

high-resolution

display_name: high-resolution

meteoswiss

display_name: meteoswiss

numerical-simulation

display_name: numerical-simulation

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester


en: subalpine isotopes picea-abies belowground-biomass afforestation

format: XLS

en: This data set provides soil organic carbon, total nitrogen, and stable carbon isotope (13C) values of mineral soil (0-45cm), organic horizons (Oi, Oe, Oa), and root biomass of an afforestation sequence (0-130years) on a subalpine pasture in Jaun, Switzerland.

afforestation

display_name: afforestation

belowground-biomass

display_name: belowground-biomass

isotopes

display_name: isotopes

picea-abies

display_name: picea-abies

subalpine

display_name: subalpine

en: Soil organic carbon stock of an afforestation sequence on a subalpine pasture


maintainer: Giulia Francesca Azzurra Donati

en: circuit-theory urban-planning biodiversity ecosystem-services network-analysis ecological-corridors

en: Amphibian movement resistance layers and scripts for connectivity modeling - part 1

en: The zipped folder includes the script to aggregate the resistance layers into squared and hexagonal grids. The subfolders “Boundaries”, “Layers”, “Reference_grids”, and “Resistance_from_SDMs” contain files either called by the code or created in the process.The subfolder “Inputs_for_Circuitscape” contains the inputs to run Circuitscape, after doing some subsequent processing steps in QGIS (listed in the R script) with the files created with the script.

format: SERVICE

en: Amphibian movement resistance layers and scripts for connectivity modelling - part 2

en: The zipped folder includes the script to create and analyse the networks from Circuitscape outputs. The subfolders “Boundaries”, “Layers”, and “Reference_net” contain files either called by the code or created in the process. The subfolder “Outputs_from_Circuitscape” contains the outputs from Circuitscape including node and branch cumulative currents in a network format.

en: This data includes (1) Scripts to aggregate landscape resistance layers into squared and hexagonal grids (i.e., different representations and resolutions), (2) Input resistance layers and focal nodes in .txt format to run in Circuitscape (Python implementation v4.0.5). Circuitscape is a software tool for modeling and analyzing landscape connectivity, which simulates movement of organisms across landscapes by estimating resistance to movement across each point of the landscape. (3) Scripts for the ecological network analysis, and (4) environmental predictors for amphibian whole-life cycle habitats used to describe the local environment for BGI design (i.e. topographic, hydrologic, edaphic, vegetation, land-use derived, movement-ecology related).

biodiversity

display_name: biodiversity

circuit-theory

display_name: circuit-theory

ecological-corridors

display_name: ecological-corridors

ecosystem-services

display_name: ecosystem-services

network-analysis

display_name: network-analysis

urban-planning

display_name: urban-planning

en: Multi-Scale Prioritization framework for Urban Blue-Green Infrastructure Planning to Support Biodiversity: Data & Codes


maintainer: M. Carol Resch

en: long-term-experiment nematodes diversity restoration grassland topsoil-removal vegetation

en: Nematode feeding types

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

He.ecto.a: Herbivorous ectoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

He.endo.a: Herbivorous endoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ba.a: Bacterivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Fu.a: Fungivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Om.a: Omnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ca.a: Carnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

en: Plant community composition (plant species)

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

column 3-252: Plant abundance per species (in total 252 plant species) expressed as cover percentage estimation according to van der Maarel (vdM 1979; 7 classes: 1-7); nomenclature according to Lauber & Wagner (1996)

en: Nematode families

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

column 3-41: Nematode abundance (individuals per 100g dry soil) per family; nomenclature according to Bongers 1988

en: Nematode colonizer-persister classes

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

CP1.a: C-P (colonizer-persister) class 1 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to enrichment indicators according to Ferris, Bongers, & de Goede 2001
CP2.a: C-P (colonizer-persister) class 2 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to stress indicators according to Ferris, Bongers, & de Goede 2001
CP3.a: C-P (colonizer-persister) class 3 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990
CP4.a: C-P (colonizer-persister) class 4 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990
CP5.a: C-P (colonizer-persister) class 5 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

en: Coordinates of one research plot were wrong. This was corrected in the current version of the file.

en: Nemadotes and vegetation

en:
Plot: Plot ID combining treatment code and plot number (in total 55 plots)

Treatment: Three restoration treatments and two reference treatments. Initial=intensively managed grasslands; Harvest only= multiple hay harvest (2-3 times) per years; Topsoil= Topsoil removal (upper 10-30 cm); Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Target= species-rich ancient grasslands

X: X-Coordinate

Y: Y-Coordinate

Ri.veg: Total number of plant species

Div.veg: Shannon diversity of plant species

Ri.nem: Total number of nematode families

Div.nem: Shannon diversity of nematode families

abund: Total nematode abundance (individuals per 100g dry soil)

MI: Maturity index according to Bongers 1990; calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

PPI: Plant parasite index according to Bongers 1990; calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

PPI.MI: Plant parasite to Maturity index according to Bongers, van der Meulen, & Korthals 1997; calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

CI: Channel index according to Ferris, Bongers, & de Goede 2001 (%); calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

EI: Enrichment index according to Ferris, Bongers, & de Goede 2001 (%); calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

SI: Structure index according to Ferris, Bongers, & de Goede 2001 (%); calculations done in online tool NINJA (Sieriebriennikov, Ferris, & de Goede, 2014)

He.a: Herbivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

He.ecto.a: Herbivorous ectoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

He.endo.a: Herbivorous endoparasite nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ba.a: Bacterivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Fu.a: Fungivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Om.a: Omnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Ca.a: Carnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014

Om.Ca.a	Sum of omnivorous and carnivorous nematode abundance (individuals per 100g dry soil); classification according to Sieriebriennikov, Ferris, & de Goede, 2014
CP1.a: C-P (colonizer-persister) class 1 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to enrichment indicators according to Ferris, Bongers, & de Goede 2001

CP2.a: C-P (colonizer-persister) class 2 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990; equivalent to stress indicators according to Ferris, Bongers, & de Goede 2001

CP3.a: C-P (colonizer-persister) class 3 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

CP4.a: C-P (colonizer-persister) class 4 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

CP5.a: C-P (colonizer-persister) class 5 nematode abundance (individuals per 100g dry soil); C-P classification according to Bongers 1990

CP3-5.a: Sum of C-P3, C-P4 and C-P5 nematode abundance (individuals per 100g dry soil) equivalent to structure indicators according to Ferris, Bongers, & de Goede 2001

protect.sp.pro: plant species categorized into species of concern based on their red list status in Switzerland as well as their protection status in Switzerland and the Canton Zurich (Moser, Gygax, Bäumler, Wyler, & Palese, 2002)

tar.sp: Number of target species (all species recorded in the eleven target plots plus propagules of species applied by hand, resulting in a total of 143 species)

Indi.moist: Plant indicator values for soil moisture according to Landolt et al. 2010

Indi.nutri: Plant indicator values for soil nutrients according to Landolt et al. 2010

Management: level of mowing and manuring frequency (35-40 kg N ha-1 application-1); intensity1 = mowing once and no manure; intensity2 = 2-3 times mowing and no manure; intensity3 = 2-3 times mowing and manuring; intensity4 = 4-5 times mowing and manuring

Tillage: last time of tillage

Land.use.history: for Initial plots = recent agricultural use; for all restored sites = agricultural use before restoration
Mowing	earliest date of biomass harvesting (excluding “Initial”) based on contracts between farmers and the Nature Protection Agency of Zurich

Soil.type: based on soil mapping survey 1991 (before restoration)

Soil.texture: determined by the sediment method (Gee & Bauder 1986) and classified into soil textural classes according to FAO (1990)

pH: soil pH (CaCl2)

Slope: slope gradient classes according to FAO (1990; %)

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:
 > Resch, M.C., Schütz, M., Graf, U., Wagenaar, R., van der Putten, W.H., Risch, A.C. 2019. Does topsoil removal in grassland restoration benefit both soil nematode and plant communities? Journal of Applied Ecology 56: 1782-1793.

Please cite this paper together with the citation for the datafile.

 Methods
 Study area and experimental settings
The study was conducted in a nature reserve (Eigental: 47° 27’ to 47° 29’ N, 8° 37’ E, 461 to 507 m a.s.l.) that is located on the Swiss Central plateau close to Zurich airport (Canton Zurich, Switzerland). The mean annual temperature in this area ranges from 8.9 to 10.6 °C, mean annual precipitation from 910 to 1260 mm [10-year average (2007-2017); MeteoSchweiz, 2018]. The main soil types are calcaric to gleyic Cambisol and Gleysols. The reserve was established in 1967 to protect small remnants of oligotrophic semi-natural grasslands (roughly 12 ha). The plant community can be characterized as Molinion and Mesobromion (semi-wet to semi-dry), depending on the site-specific groundwater level and slope inclination (Delarze, Gonseth, Eggenberg, & Vust, 2015). These remnants represent species-rich islands in an otherwise intensively managed agricultural landscape. Semi-natural grasslands covered an area of 60,000 ha in the Canton Zurich in 1939, however, by 2005 only roughly 600 ha remained (Baudirektion Kanton Zürich, 2007). In 1990, the government of Canton Zurich decided to enlarge the nature reserve Eigental. The goal was to incorporate eleven patches of 20 ha adjacent intensively farmed land and transform these patches into semi-natural grasslands. The patches had a different agricultural history, ranging from permanent (no tillage for >50 years) to temporary grassland (as part of crop rotation; last tillage <5 years). On all freshly integrated patches fertilization was stopped in 1992 and from then on biomass was harvested three times a year and removed. After 5 years without noticeable effects on vegetation composition, the Nature Conservation Agency of Canton Zurich decided to increase the restoration efforts. In 1995, a large-scale experiment was initialized to evaluate if certain treatments can facilitate restoration within a reasonable timeframe of 5 to 10 years after treatment implementation.
The three restoration treatments used were:
i. “Harvest only”: Plots are being mowed two to three times a year and the biomass is removed.
ii. “Topsoil”: Topsoil was removed to a depth of 10 to 20 cm, depending on the depth of the O and A horizon, in four randomly selected areas within each of the eleven patches in late autumn 1995. The size of each topsoil removal area depended on individual patch size and was between 2700 and 7000 m2.
iii. “Topsoil+Propagules”: Propagules from target vegetation were added on half of the area where topsoil was removed, using fresh, seed-containing hay originating from a mixture of semi-dry to semi-wet species-rich grasslands of local provenance (within a radius of 7 km). Hay applications were conducted twice in 1995 and 1996. Repeated applications were chosen to account for the low quantity of available plant material per transfer, since area ratio between receptor and donor sites was roughly 1:1. In addition, hand-collected propagules from 15 selected target species of regional provenance (within a radius of 30 km) were equally applied in 1996 and 1997.
“Topsoil” and “Topsoil+Propagules” plots are mowed once a year, and the biomass is removed. Mowing on these plots started five years after the treatment was implemented.
Eleven permanent plots of 5 m x 5 m were randomly established in each treatment to monitor the vegetation development. The experiment was complemented with 11 control plots that represent the initial state of intensively managed grasslands, further referred to as “Initial”, and 11 control plots that represent the targeted state of donor sites for “Topsoil+Propagules”, further referred to as “Target”. Consequently, the experiment consists of 55 plots (5 treatments x 11 replicates). Management of intensively used grasslands includes mowing and fertilizing (manure) between two to five times a year, as well as different tillage regimes (no tillage for >50 years; last time of tillage <5 years).

 Nematode and plant sampling
Soil nematodes were sampled in 2 m x 2 m plots, randomly established at least 2 m away from the vegetation plots. We collected eight soil cores with a 2.2 cm diameter soil core sampler (Giddings Machine Company, Windsor, CO, USA) to a depth of 12 cm (representing the majority of the plant rooting system) in each plot at the beginning of July 2017. The eight cores within each replicate plot were combined, gently homogenized, placed in coolers and transported to the laboratory of NIOO in Wageningen, the Netherlands, within one week. Free-living nematodes were extracted from 200 g of fresh soil using Oostenbrink elutriator (Oostenbrink, 1960) and concentrated, resulting in 6 mL nematode solution. The nematode solution was subdivided into three subsamples, two for morphological identification and quantification, and one for molecular work (not used in this study). For morphological identification and quantification, nematodes were heat-killed at 90 °C and fixed in 4 % formaldehyde solution (final volume 10 mL per subsample). All nematodes in 1 mL of formaldehyde solution were counted, and a minimum of 150 individuals per 1 mL sample (or all if less nematodes were present) were identified to family level using Bongers (1988). We then extrapolated the numbers of each nematode taxa identified to the entire sample and expressed them per 100 g dry soil for further analyses.
We calculated number of nematode taxa and Shannon diversity and assessed nematode community composition. In addition, we classified the nematode taxa into feeding types (herbivores, bacterivores, fungivores, omni-carnivores), structural and functional guilds (Table S4). Structural guilds assign nematode taxa according to life-history traits into five colonizer-persister (C-P) classes, ranging from one (early colonizers of new resources) to five (persisters in undisturbed habitats; Bongers 1990). C-P classes can be categorized as indicators for nutrient-enriched (C-P1), stressed (C-P2) and structured (C-P3 + C-P4 + C-P5) soil conditions (Ferris, Bongers, & de Goede, 2001). Functional guilds assign nematode taxa according to their C-P classification combined with their feeding habits (Ferris, Bongers, & de Goede, 2001). Based on the structural and functional guild classification we calculated five additional indices to assess soil nutrient status, disturbance and food web characteristics using NINJA (Sieriebriennikov, Ferris, & de Goede, 2014). 1) The Maturity index indicates the degree of different environmental perturbations (e.g., tillage, nutrient enrichment, pollution) and is used to monitor colonization and subsequent succession after disturbances (Bongers, 1990). 2) The ratio between the Plant Parasite (C-P of herbivorous nematodes only) to Maturity index is used to monitor the recovery of disturbed habitats incorporating information of life-history traits for all feeding types (Bongers, van der Meulen, & Korthals, 1997). 3) The Enrichment index indicates nutrient-enriched soils and agricultural management practices (Ferris, Bongers, & de Goede, 2001). 4) The Structure index provides information about the succession stage of the soil food web and therefore correlates with the degree of maturity of an ecosystem (Ferris, Bongers, & de Goede, 2001). 5) The Channel index provides information about the predominant decomposition pathways, where higher values stand for a higher proportion of energy transformed through the slow fungal decomposition channel (Ferris, Bongers, & de Goede, 2001). In addition, the Structure and Enrichment indices can be displayed in a biplot where nematode assemblages are plotted along a structure (x-axis) and enrichment (y-axis) trajectory (increasing index values). Each biplot quadrat reflects different levels of disturbance, soil nutrient pools and decomposition pathways (Ferris, Bongers, & de Goede, 2001).
The plant surveys were conducted on the 25 m2 permanent plots in June 2017. Plant species cover was visually assessed according to the semi-quantitative cover-abundance scale of Braun-Blanquet (1964; nomenclature: Lauber & Wagner, 1996). We calculated number of species and Shannon diversity, and assessed plant community composition. We also counted the number of target species (all species recorded in the eleven target plots plus propagules of species applied by hand, resulting in a total of 143 species) and categorized plant species into species of concern based on their red list status in Switzerland as well as their protection status in Switzerland and the Canton Zurich (Moser, Gygax, Bäumler, Wyler, & Palese, 2002). Furthermore, we calculated indicator values for soil moisture and soil nutrients for each species according to Landolt et al. (2010).

 References
Baudirektion Kanton Zürich (2007). 10 Jahre Naturschutz-Gesamtkonzept für den Kanton Zürich 1995-2005 – Stand der Umsetzung. Zürich: Baudirektion Kanton Zürich.
Bongers, T. (1988). De nematoden van Nederland. Utrecht: Stichting Uitgeverij Koninklijke Nederlandse Natuurhistorische Vereniging.
Bongers, T. (1990). The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia, 83, 14-19. doi:10.1007/BF00324627
Bongers, T., van der Meulen, H., & Korthals, G. (1997). Inverse relationship between the nematode maturity index and plant parasite index under enriched nutrient conditions. Applied Soil Ecology, 6, 195-199. doi:10.1016/S0929-1393(96)00136-9
Braun-Blanquet, J. (1964). Pflanzensoziologie, Grundzüge der Vegetationskunde (3rd ed.). Wien: Springer.
Delarze, R., Gonseth, Y., Eggenberg, S., & Vust, M. (2015). Lebensräume der Schweiz: Ökologie - Gefährdung - Kennarten (3rd ed.). Bern: Ott.
Ferris, H., Bongers, T., & de Goede, R.G.M. (2001). A framework for soil food web diagnostics: extension of the nematode faunal analysis concept. Applied Soil Ecology, 18, 13-29. doi:10.1016/S0929-1393(01)00152-4
Landolt, E., Bäumler, B., Erhardt, A., Hegg, O., Klötzli, F., Lämmler, W., … Wohlgemuth, T. (2010). Flora indicativa. Ecological indicator values and biological attributes of the Flora of Switzerland and the Alps (2nd ed.). Bern: Haupt.
Lauber, K., & Wagner, G. (1996). Flora Helvetica. Flora der Schweiz. Bern: Haupt.
MeteoSchweiz (2018). Klimabulletin Jahr 2017, Zürich: MeteoSchweiz.
Moser, D., Gygax, A., Bäumler, B., Wyler, N., & Palese, R. (2002) Rote Liste der gefährteten Farn- und Blütenpflanzen der Schweiz. Bern: BUWAL.
Oostenbrink, M. (1960). Estimating nematode populations by some selected methods. In N.J. Sasser & W.R. Jenkins (Eds.), Nematology (pp. 85-101). Chapel Hill: University of North Carolina Press.
Sieriebriennikov, B., Ferris, H., & de Goede, R.G.M (2014). NINJA: An automated calculation system for nematode-based biological monitoring. European Journal of Soil Biology, 61, 90-93. doi:10.1016/j.ejsobi.2014.02.004

diversity

display_name: diversity

grassland

display_name: grassland

long-term-experiment

display_name: long-term-experiment

nematodes

display_name: nematodes

restoration

display_name: restoration

topsoil-removal

display_name: topsoil-removal

vegetation

display_name: vegetation

en: Grassland restoration: nematodes and plant communities


maintainer: Elisabeth Hafner

en: avalanche-mapping avalanche avalanche-size-estimation remote-sensing reliability

en: AvalancheReliabilityData

en: The .zip contains all data used to conduct the reliability study as well as the results, a detailed description of the included files is contained in the included pdf. All geospatial data is provided in the Swiss Coordinate System: CH1903+ / LV95 (EPSG 2056). For any use of the data the proper citation provided is obligatory!

mimetype: application/x-zip-compressed

en:
This dataset contains the data used and collected to investigate the reliability of avalanche size estimates and avalanche outlines (see related publications). Namely this is

 Avalanche size estimates

* the 10 pictures depicting avalanches
* the survey results from the 170 participants

 Avalanche outlines mapped from oblique photographs
* the pictures of the six avalanches
* the avalanche outlines mapped by the 10 participants
* the reference mapped from the georeferenced photographs

 Avalanche outlines from remotely-sensed imagery
* the orthophotos in the four different resolutions (2m, 1m, 50cm, 25cm)
* the area of interest (AoI) delimiting the research area
* the avalanche mappings in each resolution for all five participants
* the shade masks used to separate illuminated and shaded areas

The acquisition of the orthophotos has been partially supported by the Swiss National Science Foundation (SNF; Grant N°200021_172800).

avalanche

display_name: avalanche

avalanche-mapping

display_name: avalanche-mapping

avalanche-size-estimation

display_name: avalanche-size-estimation

reliability

display_name: reliability

remote-sensing

display_name: remote-sensing

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data reliability study: avalanche size estimates and outlines


maintainer: Elisabeth D. Hafner

en: avalanche-mapping aerial-imagery avalanche-activity avalanche remote-sensing

en: 1999 avalanche data

en:
**for English see below**
Dieser Datensatz enthält die **Umrisse der 11'120 Lawinen** die aus schwarzweiss Luftbildern, welche zwischen dem 25.2.1999 und dem 1.3.1999 aufgenommen wurden, kartiert wurden. Die Lawinenumrisse haben verschiedene Attribute welche im **beigelegten Beispielschlüssel** beschrieben sind (Beispielschluessel_1999_d.pdf).
Es gibt drei Shapefiles:
* **avalanches1999_endversion1.shp**: die kartierten Lawinen (für Attribute siehe Beispielschlüssel!)
* **area_images_1999.shp**: Fläche die durch die Luftbilder abgedeckt wurde
* **clouds_1999.shp**: grobe Umrisse der Wolken in den Bildern
#
 *******************************************************************************
This dataset contains the **outlines of 11'120 avalanches** mapped from panchromatic aerial imagery taken between February 25, 1999 and March 1, 1999. The avalanche outlines have various attributes which are described in the **attached example key** (ExampleKey_AvalMapping_1999_e.pdf).
There are three shapefiles:
* **avalanches1999_endversion1.shp**: the mapped avalanches (for attributes see example key!)
**area_images_1999.shp**: Area covered by the aerial images
**clouds_1999.shp**: rough outlines of the clouds in the images

en:
**for English see below**
*******************************************************************************

 Datenbeschrieb

Dieser Datensatz enthält die **Umrisse der 11'120 Lawinen** die aus schwarzweiss Luftbildern, welche zwischen dem 25.2.1999 und dem 1.3.1999 aufgenommen wurden, kartiert wurden. Die Lawinenumrisse haben verschiedene Attribute welche im **beigelegten Beispielschlüssel** beschrieben sind (Beispielschluessel_1999_d.pdf).

Es gibt drei Shapefiles:
* **avalanches1999_endversion1.shp**: die kartierten Lawinen (für Attribute siehe Beispielschlüssel!)
* **area_images_1999.shp**: Fläche die durch die Luftbilder abgedeckt wurde
* **clouds_1999.shp**: grobe Umrisse der Wolken in den Bildern

 Bildverfügbarkeit:

Die entzerrten Luftbilder können von der [Swisstopo](https://s.geo.admin.ch/rpq3hufnb588) einzeln über den Downloadlink heruntergeladen werden (herzlichen Dank an Holger Heisig für die Prozessierung und ans BAFU für die Finanzierung der Prozessierung!!). Über "Erweiterte Werkzeuge"/ "Datei importieren" können die Bilder nach hereinziehen des Orthofotolinks direkt im map.geo.admin.ch angezeigt werden.

 Weiterführende Litertaur:
Details zu den Luftbildern und zur Kartierung, sowie eine kleine Analyse und Empfehlungen zur Verwendung der Daten finden sich unter

- **FAN Publikation** (Info folgt)

- Dal, F. J., Hafner, E. D., Peters, T., Narnhofer, D., Caye Daudt, R., Heisig, H., & Bühler, Y. (2024). Automated snow avalanche mapping with deep learning in aerial imagery from the extreme avalanche winter of 1999. In K. Gisnås, P. Gauer, H. Dahle, M. Eckerstorfer, A. Mannberg, & K. Müller (Eds.), Proceedings of the international Snow Science Workshop 2024 (pp. 1264-1271). Norwegian Geotechnical Institute.

- Hafner, E. D., Techel, F., Heisig, H., Dal, J. F., & Bühler, Y. (2024). Remotely sensed avalanche activity during three extreme avalanche periods in Switzerland. In K. Gisnås, P. Gauer, H. Dahle, M. Eckerstorfer, A. Mannberg, & K. Müller (Eds.), Proceedings of the international Snow Science Workshop 2024 (pp. 1222-1229). Norwegian Geotechnical Institute.

*******************************************************************************

 Data description

This dataset contains the **outlines of 11'120 avalanches** mapped from panchromatic aerial imagery taken between February 25, 1999 and March 1, 1999. The avalanche outlines have various attributes which are described in the **attached example key** (ExampleKey_AvalMapping_1999_e.pdf).

There are three shapefiles:
* **avalanches1999_endversion1.shp**: the mapped avalanches (for attributes see example key!)
**area_images_1999.shp**: Area covered by the aerial images
**clouds_1999.shp**: rough outlines of the clouds in the images

 Image availability:
The rectified aerial images can be downloaded individually from [Swisstopo](https://s.geo.admin.ch/bg6beetinfdc) via the download link (many thanks to Holger Heisig for processing and to BAFU for financing the processing!!). The images can be displayed directly in map.geo.admin.ch via “Advanced tools”/“Import file” after dragging in the orthophoto link.

 Further Reading:
Details on the aerial images and mapping, as well as a brief analysis and tips on using the data can be found at

- **FAN Publication** (info to follow)

- Dal, F. J., Hafner, E. D., Peters, T., Narnhofer, D., Caye Daudt, R., Heisig, H., & Bühler, Y. (2024). Automated snow avalanche mapping with deep learning in aerial imagery from the extreme avalanche winter of 1999. In K. Gisnås, P. Gauer, H. Dahle, M. Eckerstorfer, A. Mannberg, & K. Müller (Eds.), Proceedings of the international Snow Science Workshop 2024 (pp. 1264-1271). Norwegian Geotechnical Institute.

- Hafner, E. D., Techel, F., Heisig, H., Dal, J. F., & Bühler, Y. (2024). Remotely sensed avalanche activity during three extreme avalanche periods in Switzerland. In K. Gisnås, P. Gauer, H. Dahle, M. Eckerstorfer, A. Mannberg, & K. Müller (Eds.), Proceedings of the international Snow Science Workshop 2024 (pp. 1222-1229). Norwegian Geotechnical Institute.

aerial-imagery

display_name: aerial-imagery

avalanche-activity

display_name: avalanche-activity

en: Avalanche outlines February and March 1999 from aerial imagery


maintainer: Virginie Marques

en: marine biodiversity plankton fish fjord dna-metabarcoding environmental-dna

en: Metabarcoding data

en: Raw metabarcoding data for both primers (teleo and 18S) and corresponding file to perform the demultiplexing and primer trimming

en: Code, data and figures

en: Here there are all the data and code to reproduce the figures and analysis presented in the paper, with a README.md file

en:
This dataset contains the raw environmental DNA data associated with the publication *Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord* in the journal Polar Biology (2023).

 Methods

**Sampling**
We sampled the Lilliehöök fjord on the west coast of Spitsbergen (Svalbard, Norway) over 3 days from 3 to 5 of August 2021. Samples were taken from the glacier front up to the fjord mouth of the Krossfjorden system, around 30 km long, after the Lilliehöök fjord merged with the mouth of Möller fjord. The fjord’s maximum depth has been recorded at 373 m (Svendsen et al. 2002) and has no sill at its entrance, thereby facilitating water exchange with the open ocean of the West Spitsbergen Current. We used a research vessel to sample 5 sites for a total of 15 samples, sampling 3 depths per site (3-m, chlorophyll a maximum and 85-m, unless sea floor was shallower). Shallow and intermediate samples between 3-m and 12-m represent ~35-L of water filtered in-situ using long tubing and a peristaltic pump, and all other deeper samples were taken from a total of 3 Niskin bottles (General Oceanics), representing 22-L of water sampled per sample. Water was filtered through a VigiDNA filtration capsule (SPYGEN) with a 0.20-µm pore size using an Athena peristaltic pump (Proactive Environmental Products, Bradenton, Florida) with a flow rate of ~1-L/min. Each sample was handled with single use tubing and gloves.

**Molecular**
To perform the amplification, we used two sets of primers: teleo (forward: ACACCGCCCGTCACTCT, reverse: CTTCCGGTACACTTACCATG; Valentini et al. 2016) and the universal eukaryotic 1389F/1510R primer pair, amplifying the V9-18S rDNA gene (Amaral-Zettler et al. 2009) (forward: TTGTACACACCGCCC, reverse: CCTTCYGCAGGTTCACCTAC).

 Data content:

+ Metabarcoding data: This zip file contains the 2 sequencing libraries filtered to only retain the samples used in the present study.
+ Code, data and figure: This zip file contains all data and code to reproduce the figures and the analysis in the study, with an associated README explaining the content of each folder.

 Additional informations
For more details, please see the Methods in the associated publication: DOI: 10.1007/s00300-023-03187-9.

biodiversity

display_name: biodiversity

dna-metabarcoding

display_name: dna-metabarcoding

environmental-dna

display_name: environmental-dna

fish

display_name: fish

fjord

display_name: fjord

marine

display_name: marine

plankton

display_name: plankton

en: Data: Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord


en: biodiversity ecology statistical-interpolation microclimate climate-change radiation-transfer forest

en: Predicted microclimate air temperatures at 100 cm above ground. 10 m spatial resolution raster files are provided for mean daily minimum (tmin), mean (tmean) and maximum (tmax) temperatures during each month from April (04) to October (10) over the period between 2012 to 2021.

en: Predicted microclimate air temperatures at 5 cm above ground. 10 m spatial resolution raster files are provided for mean daily minimum (tmin), mean (tmean) and maximum (tmax) temperatures during each month from April (04) to October (10) over the period between 2012 to 2021.

en: Predicted microclimate topsoil temperatures at 5 cm below ground. 10 m spatial resolution raster files are provided for mean daily minimum (tmin), mean (tmean) and maximum (tmax) temperatures during each month from April (04) to October (10) over the period between 2012 to 2021.

en: Climate data matching the scales at which organisms experience climatic conditions are often missing. Yet, such data on microclimatic conditions are required to better understand climate-change impacts on biodiversity and ecosystem functioning. Here we combine a national network of microclimate temperature measurements with a novel radiative transfer model to map monthly minimum, mean and maximum temperatures during the vegetation period at a 10 meter spatial resolution across Switzerland. The temperature measurements took place in 107 sampling plots distributed across different habitat types, with 62 plots in forests, 22 below trees outside forests, and 23 in open grasslands. In each plot we measured temperature in the topsoil (-5cm), as well as in the air at 5cm and 100cm height above ground. Spatial interpolation was achieved by using a hybrid approach based on linear mixed effects models with input from detailed radiation estimates that account for topographic and vegetation shading, as well as other predictor variables related to the macroclimate, topography and vegetation height. Our data reveals strong horizontal and vertical variability in microclimate temperature, particularly for maximum temperatures at 5 cm above the ground and within the topsoil. Compared to macroclimate conditions as measured by weather stations outside forests, diurnal air and topsoil temperature ranges inside forests were reduced by up to 3.0 and 7.8 °C, respectively, while below trees outside forests, e.g. in hedges and below solitary trees, this buffering effect was 1.8 and 7.2 °C. We also found that in open grasslands, maximum temperatures at 5 cm above ground are on average 3.4 °C warmer than that of macroclimate, suggesting that in such habitats heat exposure close to the ground is often underestimated when using macroclimatic data. After accounting for macroclimate effects, microclimate patterns were primarily driven by radiation, with particularly strong effects on maximum temperatures. Results from spatial block cross-validation revealed predictive accuracies as measured by RSME’s ranging from 1.18 to 3.43 °C, with minimum temperatures generally being predicted more accurately than maximum temperatures. The microclimate maps presented here enable a more biologically relevant perspective when analysing climate-species interactions, which is expected to lead to a better understanding of biotic and ecosystem responses to climate and land use change.

climate-change

display_name: climate-change

ecology

display_name: ecology

forest

display_name: forest

microclimate

display_name: microclimate

radiation-transfer

display_name: radiation-transfer

statistical-interpolation

display_name: statistical-interpolation

en: Monthly topsoil and near surface microclimate temperature data for Switzerland


automatic-classification-of-avalanches

maintainer: Alec van Herwijnen

title_for_slug: automatic-classification-of-avalanches

en: avalanche monitoring machine-learning seismic localization

en:
This tar file contains classification results for two seismic geophone arrays deployed above Davos, Switzerland. The of the first array located at the Dischma Valley was used to automatically identify all seismic events produced by avalanches, whereas the classification perfomed at the second array located at the Wannengrat field site was used to identify airplanes and earthquakes.
Furthermore, this tar file also contains the median back-azimuth of all classified events at the Dischma field site.

mimetype: application/x-tar

en: This dataset contains the classification and localization results obtained during the automatic classification of avalanches during the winter season 2017.

avalanche

display_name: avalanche

localization

display_name: localization

machine-learning

display_name: machine-learning

monitoring

display_name: monitoring

seismic

display_name: seismic

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Automatic Classification of Avalanches


en: pest-invasion population-evolution biological-control torymus-sinensis southern-switzerland dryocosmus-kuriphilus castanea-sativa

media_type: text/csv

en:
Data has been collected from summer 2011 to 2016.

Main reasons for NA values:

-	D. kuriphilus still not arrived in the site.
-	No galls were found during the field sampling.
-	Site has not been sampled in the correspondent year because of time, weather or money constrains.
-    T. sinensis not found in the galls

Variable description:

Year = sampling year.

Coordinate, elevation, slope, aspect = average site characteristics.

ts_arrival = T. sinensis arrival year.

dk_arrival = D. kuriphilus arrival year.

dk_parasitism_by_ts = D. kuriphilus parasitism rate by T. sinensis. Formula: (no. of T. sinensis/ no. of D. kuriphilus chambers) * 100 at gall level.

dk_infestation = Percentage of attacked buds. Formula: no. of attacked buds / no. of total developed buds*100 (as presented in Kotobuki et al. 1985) at shoot level.

ts_per_bud = number of alive T. sinensis individual calculated at bud level.

dk_per_bud = number of alive D. kuriphilus individual calculated at bud level.

dk_pot_per_bud = overall number (dead and alive) D. kuriphilus individual calculated at bud level.

total_gall_nr_per_bud = average gall number per bud.

chamber_per_galls = average D. kuriphilus chamber number per gall.

For details see the submitted publication with the same name

References
Kotobuki, K., Mori, K. and Sato, Y. (1985) ‘2 methods to estimate the tree damage by chestnut gall wasp Dryocosmus-kuriphilus’, Bulletin of the fruit tree research station A (Yatabe), 2(12), pp. 29–36.

format: CSV

mimetype: text/csv

en:
This dataset contains the population evolution of a pest and its biocontrol agent in terms of presence proportion at gall level and absolute number of insects.

The study area extends from the Cuneo region (Piedmont, Italy) to southern Switzerland. In order to provide a complete range of data covering the entire process from the pest arrival to complete biological control by its natural enemy T. sinensis, a space-for-time substitution approach has been adopted so as to create a temporal gradient of the epidemic stages over the whole study area.

The southernmost Swiss sites roughly represent the arrival and establishment of the pest without the presence of the natural enemy, the central ones the early epidemic stage and the epidemic peak, whereas the northern ones the end of the epidemic with the beginning of the biocontrol. The Italian ones represent the beginning of the equilibrium between the two population as well as the situation with stable T. sinensis populations on the long term.

These data are used in the paper entitled: Torymus sinensis local and regional early population dynamics in the Insubrian and Piedmont regions

biological-control

display_name: biological-control

castanea-sativa

display_name: castanea-sativa

dryocosmus-kuriphilus

display_name: dryocosmus-kuriphilus

pest-invasion

display_name: pest-invasion

population-evolution

display_name: population-evolution

southern-switzerland

display_name: southern-switzerland

torymus-sinensis

display_name: torymus-sinensis


maintainer: Franziska Koch

en: snow liquid-water-content gps snow-depth snow-cover

en: Read-me

en: The read-me file contains the description of the data provided.

en: Dataset with GPS-derived snow cover properties and validation data

en: This file includes the data as described in the Read-me file.

en:
This data set includes GPS-derived snow water equivalent (SWE), snow depth (HS) and liquid water content (LWC) data for three entire snow-covered seasons (2015-2016, 2016-2017, 2017-2018) at the study plot Weissfluhjoch 2540 m a.s.l. (Davos, Switzerland). The procedure to derive these snow properties is described in Koch et al. (2019). The novel approach is based on a combination of GPS signal attenuation and time delay.

The dataset also includes corresponding validation data for SWE and HS measured at Weissfluhjoch, and some additional meteorological data used for interpretation of the snow cover evolution.

Please refer to the Read-me file for further details on the data.

These data are the basis of the following publication:
> Koch, F., Henkel, P., Appel, F., Schmid, L., Bach, H., Lamm, M., Prasch, M., Schweizer, J., and Mauser, W., 2019. Retrieval of snow water equivalent, liquid water content and snow height of dry and wet snow by combining GPS signal attenuation and time delay. Water Resources Research, 55(5), 4465-4487. https://doi.org/10.1029/2018WR024431

gps

display_name: gps

liquid-water-content

display_name: liquid-water-content

snow

display_name: snow

snow-cover

display_name: snow-cover

snow-depth

display_name: snow-depth

en: GPS-derived data of SWE, HS and LWC and corresponding validation data


intratrait

maintainer: Christian Rixen

title_for_slug: intratrait

en: elevation-gradient plant-traits elevation-range cold-adapted-plants climate-change neighbour-interactions

en: Plant trait data along elevation gradients on mountains

en:
This data set was used to test whether species specialized to high elevations or with narrow elevational ranges show more conservative (i.e. less variable) trait responses across their elevational distribution, or in response to neighbours, than species from lower elevations or with wider elevational ranges. We did so by studying intraspecific trait variation of 66 species along 40 elevational gradients in four countries (Switzerland, Australia, New Zealand, China) in both hemispheres. As an indication of potential neighbour interactions that could drive trait variation, we also analysed plant species’ height ratio, its height relative to its nearest neighbour.
The following traits and parameters were measured and are available in this data set:
As an indication of plant stature, we measured vegetative and generative height, where vegetative height was distance from soil to highest vegetative leaf and generative height was distance to the highest point on the reproductive shoot. As a measure of reproductive investment, we noted the presence of flowers on the randomly chosen individuals (see below). As a measure of individual and genet basal area, we measured individual plant and patch diameters, in two dimensions (along the largest diameter and perpendicular to it). In clonal plant species, plant diameter was equivalent to an individual rosette, whereas patch diameter referred to the whole genet and could represent the size of a tuft, tussock or cushion. For genera with more singular growth forms (e.g., some Gentiana species) plant and patch diameter were the same. The two diameter measurements were made at right angles, allowing estimates of patch and plant areas to be calculated as an ellipse (i.e., area = 0.5 a 0.5 b Π). All traits were measured on ten randomly selected individuals per site. Flower count data was considered in a binary fashion on a per individual basis (because for some species individuals only produce one flower when flowering) so that the presence or absence of flower(s) was a nominal value between 0 and 10 for each species at each site. We then collected at least three leaves (up to 30 for small and light leaves) from each of the first three individuals selected from each species for determination of leaf dry matter content (LDMC) and specific leaf area (SLA). For calculations of LDMC and SLA, fresh leaves were scanned on a flatbed scanner to determine leaf area. Leaves were then weighed on a balance to a precision of +/- 0.001g, prior to being air dried and reweighed with a balance to a precision of +/- 0.0001g. LDMC was calculated by dividing dry leaf mass by fresh leaf mass. SLA was calculated by dividing leaf area by dry leaf mass. Additionally, within an area of 10 cm diameter around the target individual, we determined the tallest neighbouring species and measured its vegetative and generative height, and estimated the percent cover of the target species, other vegetation, rock, and bare soil.
For more details see Rixen et al. 2022, Journal of Ecology.

climate-change

display_name: climate-change

cold-adapted-plants

display_name: cold-adapted-plants

elevation-gradient

display_name: elevation-gradient

elevation-range

display_name: elevation-range

neighbour-interactions

display_name: neighbour-interactions

plant-traits

display_name: plant-traits

en: intratrait


maintainer: Leo Gallus Bont

en: cable-yarding swisstopo swiss-geodata qgis-plugin digital-elevation-model open-source digital-planning seilaplan geoinformation-software

en: Herunterladen des DHM von swisstopo Website

en: View video on youtube!

en:
In order to use the QGIS plugin ‘Seilaplan’ for digital cable line planning, a digital terrain model (DTM) is required. As an alternative to using the ‘Swiss Geo Downloader’ plugin, the DTM can be obtained directly from Swisstopo. In this tutorial we explain step by step how to download the necessary DTM from the Swisstopo Website, and how to use it in QGIS for the digital planning of a cable line using the plugin ‘Seilaplan’. Please note that the tutorial language is German!

Link to the elevation model on the swisstopo website: https://www.swisstopo.admin.ch/de/geodata/height/alti3d.html#technische_details

Link to the rope map website: https://seilaplan.wsl.ch

********************

Für die Verwendung des QGIS Plugins Seilaplan zur digitalen Seillinienplanung ist ein digitales Höhenmodell (DHM) nötig. Als Alternative zum Swiss Geo Downloader erklären wir in diesem Tutorial Schritt für Schritt, wie man das nötige Höhenmodell von der Swisstopo Webseite herunterladen und in QGIS zur Seillinienplanung verwenden kann.

Link zum Höhenmodell auf der swisstopo Webseite: https://www.swisstopo.admin.ch/de/geodata/height/alti3d.html#technische_details

Link zur Seilaplan-Website: https://seilaplan.wsl.ch

cable-yarding

display_name: cable-yarding

digital-elevation-model

display_name: digital-elevation-model

digital-planning

display_name: digital-planning

geoinformation-software

display_name: geoinformation-software

open-source

display_name: open-source

qgis-plugin

display_name: qgis-plugin

seilaplan

display_name: seilaplan

swiss-geodata

display_name: swiss-geodata

swisstopo

display_name: swisstopo

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Seilaplan Tutorial: DTM download from swisstopo website


en: ecohydrology time-series nonstationarity streamflow hydrology nonlinear-deconvolution rainfall-runoff-modelling precipitation

en: {{deprecated version}} ERRA_scripts.zip

en: Zip-compressed folder containing two versions of the ERRA script. ERRA_v1.0.R uses Rcpp to speed up several key calculations, but requires a C++ compiler. ERRA_v1.0_no_Rcpp.R is a bit slower but does not require a C++ compiler or Rcpp. Public use of these scripts is permitted under GNU General Public License 3 (GPL3); for details see https://www.gnu.org/licenses/

en: {{deprecated version}} An introduction to ERRA.pdf

en: "An introduction to ERRA" presents a series of vignettes that introduce some of the capabilities of the Ensemble Rainfall-Runoff Analysis (ERRA) script, and that show how to invoke them. This introduction also includes documentation for ERRA function calls, largely reproducing the documentation embedded in the ERRA script itself.

en: Demonstration scripts.zip

en: Zip-compressed folder containing demonstration scripts, source data, and output files for the ERRA results shown in "Introduction to ERRA" and in J.W. Kirchner, "Characterizing nonlinear, nonstationary, and heterogeneous hydrologic behavior using Ensemble Rainfall-Runoff Analysis (ERRA): proof of concept", Hydrology and Earth System Sciences, 2024.

en: An introduction to ERRA v1.06.pdf

en: Zip-compressed folder containing two versions of the ERRA script. ERRA_v1.06.R uses Rcpp to speed up several key calculations, but requires a C++ compiler. ERRA_v1.06_no_Rcpp.R is a bit slower but does not require a C++ compiler or Rcpp. Public use of these scripts is permitted under GNU General Public License 3 (GPL3); for details see https://www.gnu.org/licenses/

en:
ERRA is a data-driven, nonparametric, model-independent method for quantifying rainfall-runoff relationships across a spectrum of time lags, in systems that may be nonlinear, nonstationary, and spatially heterogeneous.
Researchers using ERRA in published work should cite J.W. Kirchner, "Characterizing nonlinear, nonstationary, and heterogeneous hydrologic behavior using Ensemble Rainfall-Runoff Analysis (ERRA): proof of concept", Hydrology and Earth System Sciences, 2024 (for ERRA itself) and J.W. Kirchner, "Impulse response functions for nonlinear, nonstationary, and heterogeneous systems, estimated by deconvolution and de-mixing of noisy time series", Sensors, 22(9), 3291, https://doi.org/10.3390/s22093291, 2022 (for the underlying mathematics).
This data set includes two versions of the ERRA script written in the open-source programming language R, a detailed user's guide, and sample scripts and source data for all of the results in Kirchner (2024).
These scripts are made publicly available under GNU General Public License 3; for details see https://www.gnu.org/licenses/. The data and documentation are made available under Creative Commons Attribution Share-Alike CC-BY-SA.
ETH Zurich, WSL, and James Kirchner make ABSOLUTELY NO WARRANTIES OF ANY KIND, including NO WARRANTIES, expressed or implied, that this software is free of errors or is suitable for any particular purpose. Users are solely responsible for determining the suitability and reliability of this software for their own purposes.

ecohydrology

display_name: ecohydrology

hydrology

display_name: hydrology

nonlinear-deconvolution

display_name: nonlinear-deconvolution

nonstationarity

display_name: nonstationarity

precipitation

display_name: precipitation

rainfall-runoff-modelling

display_name: rainfall-runoff-modelling

streamflow

display_name: streamflow

time-series

display_name: time-series

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: ERRA -- an R script for Ensemble Rainfall-Runoff Analysis


maintainer: Leonie Schönbeck

en: drought fluorescence vpd pinus-sylvestris photosynthesis gas-exchange acclimation

en: Methods light response

en: Methods and parameters for light response curves

en: Variable names and units

en: Variable names, description and units for the Pfynwald Gas exchange data

en: Methods fluorescence

en:
Parameters and methodology for Fluorescence measurements

Metadata format from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods survey

en: Parameters and methods for point measurements / survey measurements

en: Pfynwald gas exchange

en:
Full dataset of Pfynwald gas exchange data taken in the period from June 2013 to October 2020.
All metdata can be found in attached documents.
Data uploaded after quality control using guidelines by Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Instrument details

en:
Instrument details for all LiCor instruments used during collection of dataset.

Metatdata created following guidelines from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods ACi curves

en:
Parameters and methods for CO2 response curves of Photosynthesis.

Metatdata format by
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods diurnal measurements

en:
Parameters and methodology for diurnal measurements

Metadata format from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en:
Gas exchange was measured on control, irrigated and irrigation-stop trees at the irrigation experiment Pfynwald, during the years 2013, 2014, 2016-2020. The measurement campaigns served different purposes, resulting in a large dataset containing survey data, CO2 response curves of photosynthesis, light response curves of photosynthesis, and fluorescence measurements. Measurements were done with LiCor 6400 and LiCor 6800 instruments. Until 2016, measurements were done on excised branches or branches lower in the canopy. From 2016 onwards, measurements were done in the top of the canopy using fixed installed scaffolds.
All metadata can be found in the attached documents.

acclimation

display_name: acclimation

drought

display_name: drought

fluorescence

display_name: fluorescence

gas-exchange

display_name: gas-exchange

photosynthesis

display_name: photosynthesis

pinus-sylvestris

display_name: pinus-sylvestris

vpd

display_name: vpd

en: 2013-2020 gas exchange at Pfynwald


en: snow advection 18o stable-water-isotope metamorphism

en: Read-me

media_type: text/plain

en: A short description of the data contained in the zipped-file. Recommended for reading before downloading the dataset.

format: TXT

mimetype: text/plain

en: Data files and read-me

en: raw data and micro-CT data available from contacts

en:
Stable water isotopes (δ18O) obtained from snow and ice samples of polar regions are used to reconstruct past climate variability, but heat and mass transport processes can affect the isotopic composition. Here we present an experimental study on the effect on the snow isotopic composition by airflow through a snow pack in controlled laboratory conditions. The influence of isothermal and controlled temperature gradient conditions on the δ18O content in the snow and interstitial water vapor is elucidated. The observed disequilibrium between snow and vapor isotopes led to exchange of isotopes between snow and vapor under non-equilibrium processes, significantly changing the δ18O content of the snow. The type of metamorphism of the snow had a significant influence on this process.
Ebner, P. P., Steen-Larsen, H. C., Stenni, B., Schneebeli, M., and Steinfeld, A.: Experimental observation of transient δ18O interaction between snow and advective airflow under various temperature gradient conditions, The Cryosphere Discuss., https://doi.org/10.5194/tc-2017-16, accepted, 2017.

advection

display_name: advection

metamorphism

display_name: metamorphism

snow

display_name: snow

stable-water-isotope

display_name: stable-water-isotope

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Experiments on stable water isotopes,  snow metamorphism, and advection


en: daucus-carota pollination plant-pollinator-interactions symphytum-officinale urbanisation onobrychis-viciifolia better-gardens urban-ecology pollinator-experiment bettergardens zurich garden-experiment raphanus-sativus plant-insect-interaction urban-biodiversity gardens green-spaces

en:
This repository includes all data presented in the preprint as part of the first submission to Data in Brief:
Reji Chacko, M., Moretti, M., and Frey, D. (2025). A comprehensive dataset on pollinator diversity, visitation rates, individual-based traits, and pollination success across four plant species in an urban garden experiment. EcoEvoRxiv. https://doi.org/10.32942/X2J645
The repository contains eight directories, organised as follows:
data/
├── 01_metadata/  Detailed descriptions of each dataset in this repository
│  └── data_description.xlsx
├── 02_sampling_protocol/  Field sampling protocols in German (original) and English (translation)
│  ├── protocol_english.pdf
│  └── protocol_german.pdf
├── 03_site_data/  Garden site coordinates
│  └── garden_site_coordinates.csv
├── 04_taxonomic_data/  Taxonomic checklist of observed species
│  └── taxa_checklist.csv
├── 05_field_data/  Raw field sampling data
│  └── raw_sampling_data.xlsx
├── 06_trait_data/  Individual-level traits and flower visitation matrix
│  ├── individual_traits.csv
│  └── species_temporal_flower_visitation_matrix.csv
├── 07_pollination_success/  Seed and fruit set per phytometer species
│  ├── daucus_carota_seed_set.csv
│  ├── onobrychis_viciifolia_fruit_set.csv
│  ├── raphanus_sativus_fruit_set.csv
│  ├── raphanus_sativus_seed_set.csv
│  ├── symphytum_officinale_fruit_set.csv
│  └── symphytum_officinale_seed_set.csv
├── 08_scripts/  R scripts to reproduce figures and Table 2 from the paper
│  ├── figure_1.R
│  ├── figure_2.R
│  ├── figure_3.R
│  ├── figure_4.R
│  └── table_2.R
└── README.txt
Note: The metadata Excel file contains a separate sheet describing each dataset, so individual file descriptions are not repeated here.

en: This dataset contains detailed records of pollinator communities and plant reproductive outcomes from an urban garden experiment in Zurich, Switzerland. It includes flower visitation frequency and pollinator species richness for four insect-pollinated plant species observed across 24 home gardens. The dataset spans 167 pollinator taxa, with over 5,700 individuals identified, mostly to species or genus level. It features individual-level trait measurements for pollinators, such as body size and tongue lengths. Measures of pollination success, including seed and fruit set, are provided for each plant species.

better-gardens

display_name: better-gardens

bettergardens

display_name: bettergardens

daucus-carota

display_name: daucus-carota

garden-experiment

display_name: garden-experiment

gardens

display_name: gardens

green-spaces

display_name: green-spaces

onobrychis-viciifolia

display_name: onobrychis-viciifolia

plant-insect-interaction

display_name: plant-insect-interaction

plant-pollinator-interactions

display_name: plant-pollinator-interactions

pollination

display_name: pollination

pollinator-experiment

display_name: pollinator-experiment

raphanus-sativus

display_name: raphanus-sativus

symphytum-officinale

display_name: symphytum-officinale

urban-biodiversity

display_name: urban-biodiversity

urban-ecology

display_name: urban-ecology

urbanisation

display_name: urbanisation

zurich

display_name: zurich

en: Comprehensive dataset of pollinator diversity and visitation rates with individual-based traits and pollination success across four urban garden plant species


greenland-shrubs-and-microclimate

maintainer: Nathalie Chardon

title_for_slug: greenland-shrubs-and-microclimate

en: arctic climate validation accessible-shrub-forest sdm field-data

en: Kangerluarsunnguaq

en:
 Collected August 2020 (PI: Nathalie Isabelle Chardon)

These data collected August 2020 (PI: Nathalie Isabelle Chardon). Please contact N. I. Chardon (nathalie.chardon_at_gmail.com) for individual quadrat (i.e. 1 m x 1 m) data, which are averaged at the 90 m spatial grid here.

 COLUMN ABBREVIATIONS

 Metadata for 90 m spatial grid

id: sampling zone and unique 90 m grid identifier

long: WGS84 longitude

lat: WGS84 latitude

x_stere: longitude in Polar Stereographic (EPSG 4326)

y_stere: latitude in Polar Stereographic (EPSG 4326)

date: sampling day.month.year

 Species presence [1] or absence [0] at grid level

alcr: _Alnus crispa_

bena: _Betula nana_

dila: _Diapensia lapponica_

emni: _Empetrum nigrum_

hahy: _Harimanella hypoides_

lopr: _Loiseleuria procumbens_

oxpa: _Oxycoccus palustre_

phca: _Phyllodoce caerulea_

rhod: _Rhododendron_ sp.

saar: _Salix arctica_

sagl: _Salix glauca_

sahe: _Salix herbacea_

vaul: _Vaccinium uliginosum_

drin: _Dryas integrifolia_

thpr: _Thymus praecox_

 Habitat characteristics [% cover]

shrub: all shrub species

gram: graminoids

forb: forbs

bryo: bryophytes

lich: lichens

litt: litter

bare: bare ground

stone: stones (> 2 cm)

org: organic crust

 Shrub species height (maximum vegetative height) [mm] and cover (estimated in 1x1 m quadrat) [%]

alcr_c: _Alnus crispa_ cover

alcr_h: _Alnus crispa_ height

bena_c: _Betula nana_ cover

bena_h: _Betula nana_ height

dila_c: _Diapensia lapponica_ cover

dila_h: _Diapensia lapponica_ height

emni_c: _Empetrum nigrum_ cover

emni_h: _Empetrum nigrum_ height

hahy_c: _Harimanella hypoides_ cover

hahy_h: _Harimanella hypoides_ height

lopr_c: _Loiseleuria procumbens_ cover

lopr_h: _Loiseleuria procumbens_ height

oxpa_c: _Oxycoccus palustre_ cover

oxpa_h: _Oxycoccus palustre_ height

phca_c: _Phyllodoce caerulea_ cover

phca_height: _Phyllodoce caerulea_ height

rhod_c: _Rhododendron_ sp. cover

rhod_h: _Rhododendron_ sp. height

saar_c: _Salix arctica_ cover

saar_h: _Salix arctica_ height

sagl_c: _Salix glauca_ cover

sagl_h: _Salix glauca_ height

sahe_c: _Salix herbacea_ cover

sahe_h: _Salix herbacea_ height

vaul_c: _Vaccinium uliginosum_ cover

vaul_h: _Vaccinium uliginosum_ height

drin_c: _Dryas integrifolia_ cover

drin_h: _Dryas integrifolia_ height

 Community characteristics

rich_pa: shrub species richness at grid level

rich: shrub species richness averaged across 3 1x1 m sampling quadrats per grid

shan: Shannon diversity (‘vegan’ package; Oksanen et al. 2019)

comp_bena: shrub competition on _Betula nana_ (i.e. summed cover of non-_B. nana_ species) [% cover]

comp_sagl: shrub competition on _Salix glauca_ (i.e. summed cover of non-_S. glauca_ species) [% cover]

ht_cwm: maximum shrub canopy height (i.e. community weighted mean by abundance of maximum shrub height) [mm]

 Topography and terrain wetness (calculated from)

tcws: Tasseled Cap Wetness component (Sentinal images)

slope: slope angle (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

twi: SAGA wetness index (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015)

asp: aspect (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

 Downscaled climate (time series 1984 – 2013)

insoljja: average June-August insolation [MJ cm-2 yr-1]

precipmam: cumulative March-May precipitation [mm]

tempcont: yearly maximum – minimum temperature [ºC]

tempmin: yearly minimum temperature [ºC]

precipjja: cumulative June-August precipitation [mm]

tempjja: average maximum June-August temperature [ºC]

tempmax: yearly maximum temperature [ºC]

en: GitLab Repository

en: Zip drive of GitLab repository contents (https://gitlab.com/nathaliechardon/gl_microclim).

en: Nuup Kangerlua

en:
 Collected July-August 2011-2013 (PI: Jacob Nabe-Nielsen)

These data collected July-August 2011-2013 (PI: Jacob Nabe-Nielsen). Please contact J. Nabe-Nielsen (jnn_at_ecos.au.dk) to request access to data on all surveyed shrub species. Available here are only data used in Chardon et al. 2022.

 COLUMN ABBREVIATIONS

 Metadata for 90 m spatial grid

year: sampling year

alt: average altitude of grid as recorded during field surveys [m]

long: WGS84 longitude

lat: WGS84 latitude

x_stere: longitude in Polar Stereographic (EPSG 4326)

y_stere: latitude in Polar Stereographic (EPSG 4326)

 Species presence [1] or absence [0] at grid level

pa_bena: _Betula nana_

pa_sagl: _Salix glauca_

 Shrub species cover (calculated from pin hits in 0.7 x 0.7 m frame, based on total of 25 hits) [%]

cov_bena: _Betula nana_ cover

cov_sagl: _Salix glauca_ cover

 Downscaled climate (time series 1984 – 2013)

tempjja: average maximum June-August temperature [ºC]

tempmax: yearly maximum temperature [ºC]

tempmin: yearly minimum temperature [ºC]

tempcont: yearly maximum – minimum temperature [ºC]

precipmam: cumulative March-May precipitation [mm]

precipjja: cumulative June-August precipitation [mm]

insoljja: average June-August insolation [MJ cm-2 yr-1]

 Topography and terrain wetness (calculated from)

twi: SAGA wetness index (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015)

slope: slope angle (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

asp: aspect (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

tcws: Tasseled Cap Wetness component (Sentinal images)

 Community characteristics

rich: shrub species richness averaged across pin-point frames per grid

shan: Shannon diversity (‘vegan’ package; Oksanen et al. 2019)

comp_bena: shrub competition on Betula nana (i.e. summed cover of non-_B. nana_ species) [% cover]

comp_sagl: shrub competition on Salix glauca (i.e. summed cover of non-_S. glauca_ species) [% cover]

en:
 Study Aim

We collected these data to alternatively train and validate high resolution (~ 90 m) Species Distribution Models (SDMs) and Species Abundance Models (SAMs) for _Betula nana_ L. (dwarf birch, Betulaceae) and _Salix glauca_ L. (grey willow, Salicaceae) in Southwest Greenland to assess how well such models can predict local-scale patterns.

 Data Description

Individual (presence-absence, abundance, maximum vegetative height) and community (species composition, maximum canopy height) shrub data for two fjords near Nuuk, Southwest Greenland. Also provided are corresponding downscaled climate data as well as calculated topographic and terrain wetness indicator variables.

 Nuup Kangerlua (Godthåbsfjord)

_Betula nana_ and _Salix glauca_ presence-absence, abundance, community species richness

 Kangerluarsunnguaq (Kobbefjord)

Shrub presence-absence, abundance, maximum vegetative height, community composition, maximum shrub canopy height

 Methods

 Field survey in Nuup Kangerlua

We conducted a stratified systematic plant survey along the length of Nuup Kangerlua (NK) fjord in Soutwesth Greenland (Fig. 1 in Chardon et al. 2022; following Nabe-Nielsen et al., 2017). At five distinct sites, we sampled along elevational gradients to collect data on presences, absences, abundance, and species composition of all woody species using a 0.7 x 0.7 m pin-point frame (Fig. 1e in Chardon et al. 2022). For model training, we converted these pin-point data to percent cover estimates based on the number of pins dropped (n = 25 per plot) and averaged them across the 119 spatio-climatic grids (see next section) corresponding to the plot locations (for details see Appendix S2 in Chardon et al. 2022).

 Field survey in Kangerluarsunnguaq

We conducted a random stratified plant survey in Kangerluarsunnguaq (K) fjord in Southwest Greenland. We used a preliminary Species Abundance Model trained with summed pin counts of _Betula nana_ in NK fjord (see Fig. S1.3 in Chardon et al. 2022) to stratify the ~ 27 x 17 km fjord landscape into low, medium, and high abundances classes. We randomly selected 90 x 90 m spatio-climatic grids to survey in each class for a total of 200 grids, ensuring that they were accessible by foot or boat (for details see Appendix S2 in Chardon et al. 2022). Within each grid, we sampled within three 1 m2 quadrats arranged in a randomly rotated equilateral triangle centered on the mid-point of the cell. We used a gridded sampling quadrat with 1% delineations (Fig. 1h in Chardon et al. 2022) to record woody species presences, absences, and composition, estimated percent cover, and measured maximum shrub species vegetatitve height. At every plot, we also visually scanned the area in a 20 m radius from the plot and recorded the presence of any additional shrub species to estimate grid-level species richness. As in NK fjord, we averaged these data at the grid level (for details see Appendix S2 in Chardon et al. 2022).

 Biotic variables

We calculated biotic microscale variables from the plant survey data collected in NK and K fjords. We calculated shrub species richness, diversity, and competition (i.e. sum of non-B. nana or non-S. glauca pin hits or percent cover). In K fjord, we also calculated canopy height as the community weighted mean (by abundance) of maximum vegetative shrub height.

 Climate variables

We computed high resolution temperature, precipitation, and insolation for local scale data for the study area by statistically downscaling climate time series (1982 - 2013) from the monthly CHELSA data (Karger et al. 2017). We downscaled these data from 30 arc sec (~ 400 m at the latitude of our study) to our target grid size of ~ 90 m with geographic weighted regression and using the MEaSUREs Greenland Ice Mapping Project (GIMP) Digital Elevation Model (DEM) v. 1 (Howat et al., 2014, 2015). We then calculated 30-year averages of the climate parameters: average summer (June – August) maximum temperature, yearly maximum temperature, yearly minimum temperature, temperature continentality (yearly max. - min. temperatures), cumulative Spring (March – May) precipitation, cumulative summer precipitation, and average summer incident solar radiation (henceforth, insolation) (for calculation details see Appendices S2, S3 in Chardon et al. 2022 and Appendix S2 in von Oppen et al. 2021).

 Topography and terrain wetness indicator variables

We calculated several topographic and terrain wetness indices at a local scale. We derived slope, aspect, and the SAGA wetness index (hereafter TWI; Boehner et al., 2002; Boehner and Selige, 2006) from the GIMP DEM. TWI is a measure of how ‘wet’ an area is, based on water drainage from the surrounding landscape. We also calculated the tasseled cap wetness component (hereafter TCW, Crist and Cicone 1984) from satellite images (for details see Appendices S2, S3 in Chardon et al. 2022) as an alternative measure of wetness.

 Computer code

Attached as zip file and available on GitLab (https://gitlab.com/nathaliechardon/gl_microclim)

 Third-party data

Data used to calculate climate, topography, and terrain wetness indicator variables are publicly available (see Appendix S2 in Chardon et al. 2022 for all data references).

accessible-shrub-forest

display_name: accessible-shrub-forest

arctic

display_name: arctic

climate

display_name: climate

field-data

display_name: field-data

sdm

display_name: sdm

validation

display_name: validation

en: Greenland shrubs and microclimate


maintainer: Yohann Chauvier

en: species-observations accepted-name species-distribution range-maps occurrence-records landsca gbif hard-limit taxonomy large-scale ecoregions filtering flags synonyms r-package conservation

en: GitHub URL

en: gbif.range R package version 1.1 (current)

en: gbif.range R package version 0.2 (deprecated)

en: wsl.gbif R package version 0.1 (deprecated)

en: Test version, not to be used.

en: Although species range may be obtained using expert maps or modeling methods, expert data is often species-limited and statistical models need more technical expertise as well as many species observations. When unavailable, such information may be extracted from the Global Biodiversity Information facility (GBIF), the largest public data repository inventorying georeferenced species observations worldwide. However, retrieving GBIF records at large scale may be tedious if users are unaware of specific tools and functions that need to be employed. Here we present *gbif.range*, an R library that contains automated methods to generate species range maps from scratch using in-house ecoregions shapefiles and an easy-to-use GBIF download wrapper. Finally, this library also offers a set of additional very useful parameters and functions for large GBIF datasets (generate doi, extract GBIF taxonomy, records filtering...). [gbif.range R project](https://github.com/8Ginette8/gbif.range)

accepted-name

display_name: accepted-name

conservation

display_name: conservation

ecoregions

display_name: ecoregions

filtering

display_name: filtering

flags

display_name: flags

gbif

display_name: gbif

hard-limit

display_name: hard-limit

landsca

display_name: landsca

large-scale

display_name: large-scale

occurrence-records

display_name: occurrence-records

r-package

display_name: r-package

range-maps

display_name: range-maps

species-distribution

display_name: species-distribution

species-observations

display_name: species-observations

synonyms

display_name: synonyms

taxonomy

display_name: taxonomy

educ

en: Education, culture and sport

en: gbif.range - An R package to generate species range maps based on ecoregions and a user-friendly GBIF wrapper


weather-station-davos-wolfgang

maintainer: Jörg Wieder

title_for_slug: weather-station-davos-wolfgang

en: relative-humidity weather temperature pressure raclets

en: Weather Station Davos Wolfgang

en: The data file contains date and time (YYYY-MM-DD hh:mm:ss) in UTC, temperature (°C), relative humidity (%), pressure (hPa) at 10 m above ground and above sea level. The data was averaged over 10 minutes.

en: The dataset contains weather parameters measured at Davos Wolfgang (LON: 9.853594, LAT: 46.835577).

pressure

display_name: pressure

raclets

display_name: raclets

relative-humidity

display_name: relative-humidity

temperature

display_name: temperature

weather

display_name: weather

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


vegetation-height-model-nfi

maintainer: Christian Ginzler

title_for_slug: vegetation-height-model-nfi

en: vegetation-height-model 3d photogrammety point-cloud forest

en: Thumbnail

mimetype: image/jpeg

en: 2015 Vegetation Height Model NFI (2010-2015)

en:
Vegetation Height Model of Switzerland for the year 2015 (cloud optimized geotiff)
and Metadata file with information about acquisition date of used images for tiles of 500 x 500 m (geopackage).

en: 2016 Vegetation Height Model NFI (2011-2016)

en:
Vegetation Height Model of Switzerland for the year 2016 (cloud optimized geotiff)
and Metadata file with information about acquisition date of used images for tiles of 500 x 500 m (geopackage).

en: 2022 Vegetation Height Model NFI (2017-2022)

en:
Vegetation Height Model of Switzerland for the year 2022 (cloud optimized geotiff)
and Metadata file with information about acquisition date of used images for tiles of 500 x 500 m (geopackage).

en: 2012 Vegetation Height Model NFI (2007-2012)

en:
Vegetation Height Model of Switzerland for the year 2012 (cloud optimized geotiff)
and Metadata file with information about acquisition date of used images for tiles of 500 x 500 m (geopackage).

en:
Vegetation Height Model of Switzerland for the year 2021 (cloud optimized geotiff)
and Metadata file with information about acquisition date of used images for tiles of 500 x 500 m (geopackage).

en: Countrywide Stereo-Image Matching for Updating Digital Surface Models in the Framework of the Swiss National Forest Inventory

en: 2023 Vegetation Height Model NFI (current)

en:
Vegetation Height Model of Switzerland for the year 2023 (cloud optimized geotiff)
and Metadata file with information about acquisition date of used images for tiles of 500 x 500 m (geopackage).

en: 2019 Vegetation Height Model NFI (2013-2019)

en:
Vegetation Height Model of Switzerland for the year 2019 (cloud optimized geotiff)
and Metadata file with information about acquisition date of used images for tiles of 500 x 500 m (geopackage).

en: 2020 Vegetation Height Model NFI (2013-2020)

en:
Vegetation Height Model of Switzerland for the year 2020 (cloud optimized geotiff)
and Metadata file with information about acquisition date of used images for tiles of 500 x 500 m (geopackage).

en:
Countrywide **vegetation height models (VHM)** were generated for Switzerland based on **stereo aerial images**, acquired by the Federal Office of Topography swisstopo.
From the ADS-80/100 sensor data, first a digital surface model (DSM) with a spatial resolution of 1 × 1 m is processed. This DSM is then normalized using the digital terrain model (DTM) swissALTI3D (swisstopo). Buildings and other artificial objects are masked out from the nomalized DSM (nDSM) using information from the topogrphic landscape model - TLM (swisstopo) to obtain the actual vegetation height model (VHM).
These VHM's are produced in the framework of the Swiss National forest Inventory (NFI). Each year about 1/6 of Switzerland's surface is updated using the leaf-on aerial images acquired by swisstopo (may - october).
Further information on the creation of the VHM NFI can be found in the paper Ginzler and Hobi (2015, https://doi.org/10.3390/rs70404343).

forest

display_name: forest

photogrammety

display_name: photogrammety

point-cloud

display_name: point-cloud

vegetation-height-model

display_name: vegetation-height-model

en: Vegetation Height Model NFI