maintainer: Peter Bebi

en: soil-temperature carbon-dioxide climate-change experiment vegetation stillberg

en: Data FACE Stillberg

en: Folder in .zip format containing the FACE datasets.

en: Metadata FACE Stillberg Data File Description

en: List of descriptions for each of the .csv FACE data files.

en: Project Description FACE Stillberg

en: Link to FACE project description on the WSL website.

en: Metadata FACE Stillberg Experimental Design

en: Schematic illustration and tabular listing of the FACE experimental design.

en:
 Background information

High elevation ecosystems are important in research about environmental change because shifts in climate associated with anthropogenic greenhouse gas emissions are predicted to be more pronounced in these areas compared to most other regions of the world. This project involved a Free Air CO2 Enrichment (FACE) and soil warming experiment located in a natural treeline environment near Davos, Switzerland (Stillberg, 2200 m a.s.l.). Elevated atmospheric CO2 concentrations (+200 ppm) were applied from 2001 until 2009, and a soil warming treatment (+4 °C) was applied from 2007 until 2012. The combined CO2 enrichment and warming treatment reflects conditions expected to occur in this region in approximately 2050. A broad range of ecological and biogeochemical research was carried out as part of this environmental change project.

 Experimental design

The experiment consisted of 40 hexagonal 1.1 m² plots, 20 with a *Pinus mugo* ssp. *uncinata* (mountain pine, evergreen) individual in the centre and 20 with a *Larix decidua* (European larch, deciduous) individual in the centre. A dense cover of understorey vegetation surrounded the tree in each plot, including the dominant dwarf shrub species *Vaccinium myrtillus* (bilberry), *Vaccinium gaultherioides* (group *V. uliginosum agg.*, northern bilberry) and *Empetrum nigrum* ssp. *hermaphroditum* (crowberry) plus several herbaceous and non-vascular species.
At the beginning of the experimental period, the 40 plots were assigned to ten groups of four neighbouring plots (two larch and two pine trees per group) in order to facilitate the logistics of CO2 distribution and regulation. Half of these groups were randomly assigned to an elevated CO2 treatment, while the remaining groups served as controls and received no additional CO2. In spring 2007, one plot of each tree species identity was randomly selected from each of the 10 CO2 treatment groups and assigned a soil warming treatment, yielding a balanced design with a replication of five individual plots for each combination of CO2 level, warming treatment and tree species.

 Data description

Soil and air conditions have been monitored closely throughout the study period, with most measurements made during the combined CO2 x warming experiment (2007-2009). The data comprise of air temperature, soil temperature, soil moisture, sapflow, tree diameter and CO2 measurements.

carbon-dioxide

display_name: carbon-dioxide

experiment

display_name: experiment

soil-temperature

display_name: soil-temperature

stillberg

display_name: stillberg

vegetation

display_name: vegetation

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: FACE: Stillberg CO2 enrichment and soil warming study


maintainer: Dominique Weber

en: remote-sensing landsat use-intensity land-use management grassland mowing sentinel-2

state: active

type: dataset

en: Webcam-based reference data

en: Webcam-based reference data from 2020 and 2021 (see readme).

format: SERVICE

en: Grassland-use intensity map 2020

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2020. See readme file for more details.

format: GeoTIFF

en: Grassland-use intensity map 2019

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2019. See readme file for more details.

en: Grassland-use intensity map 2018

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2018. See readme file for more details.

en: Preview time of 1st grassland management event 2020

media_type: image/png

en: Spatial distribution of the timing (day of year; DOY) of the first management event for Switzerland and for three zoomed-in regions (a, b, c). The three zoomed-in regions show different grassland-use intensities, which are reflected in the timing of the first event of the year (Weber et al., 2023; IN REVIEW)

format: PNG

en: Preview number of grassland management events 2020

en: Spatial distribution of the number of management events for Switzerland and for three zoomed-in regions (a, b, c). The three zoomed-in regions show different grassland-use intensities, which are reflected in the distribution of management frequency (Weber et al., 2023; IN REVIEW)

en: Grassland-use intensity map 2021

en: Raster stack with information on the number and timing of grassland-management events (i.e. mowing, grazing) at a spatial resolution of 10 m × 10 m for the whole of Switzerland for 2021. See readme file for more details.

en: Readme

media_type: text/plain

en: Metadata and description of the maps and webcam-based reference data.

format: TXT

en:
A rule-based algorithm [(Schwieder et al., 2022)](https://doi.org/10.1016/j.rse.2021.112795) was used to produce annual maps for 2018–2021 of grassland-management events, i.e. mowing and/or grazing, for Switzerland using Sentinel-2 and Landsat 8 satellite time series. All satellite images were processed with the [FORCE](https://force-eo.readthedocs.io) framework.

The resulting maps provide information on the number and timing of grassland-management events at a spatial resolution of 10 m × 10 m for the whole of Switzerland. For the final maps, permanent grasslands were masked using a variety of land-use layers, according to [Huber et al. (2022)](https://doi.org/10.1002/rse2.298) but replacing the crop mask with the agricultural-use data from the cantons.

We assessed the detection of management events based on independent reference data, which we acquired from daily time series of publicly available webcams that are widely distributed across Switzerland. We further tested the ecological relevance of the generated intensity measures in relation to nationwide biodiversity data (see [Weber et al., 2023](https://doi.org/10.1002/rse2.372)).

The webcam-based reference data used for verification was subsequently added on 14.02.2024.

grassland

display_name: grassland

land-use

display_name: land-use

landsat

display_name: landsat

management

display_name: management

mowing

display_name: mowing

remote-sensing

display_name: remote-sensing

use-intensity

display_name: use-intensity

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Grassland-use intensity maps for Switzerland


maintainer: Marco Moretti

en: pollination sustainability urbanization honeybees urban-biodiversity remote-sensing

en: Dataset 3

media_type: text/csv

en: Dataset on the the number of beehives and apiaries on the years 2012, 2013, 2014, 2015, 2016, 2017, 2018 in several Swiss cities.

format: CSV

en: Not used:

en: Not used for the analyses and not link to the paper.

en: Dataset 2

en: Dataset 2: Processed data for modelling balance urban greenspace

en: Dataset 1

en: Dataset 1: Processed data for urban beekeeping 2012 & 2018

en: Data on: (1) (Dataset 1) spatial distribution of urban beekeeping (number of hives and number of beekeeping locations) in 14 Swiss cities (Geneva, Lausanne, Biel, Neuchatel, Basel, Zurich, Chur, Luzern, St. Gallen, Winterthur, Bern, Lugano, Bellinzona, Thun) for the period 2012-2018; (2) (Dataset 2) aggregated data to model the sustainability of urban beekeeping.

honeybees

display_name: honeybees

pollination

display_name: pollination

sustainability

display_name: sustainability

urban-biodiversity

display_name: urban-biodiversity

urbanization

display_name: urbanization

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Challenging the sustainability of urban beekeeping: evidence from Swiss cities


maintainer: Jan Magnusson

en: cryosphere snow modelling hydrology dischma inarch

en: Dischma dataset - v20241219 and v20250821

media_type: application/zip

en: The inarch_dischma_20241219.zip file contains data for the period from 2016 to 2023, as described in the publication linked to this repository. The inarch_dischma_20250821.zip file contains data for the period from 2023 to 2024, and thus ammends the previous file with an additional year of data. Both zip files contain a readme describing the content in detail. Static files (e.g., landuse data) are only available in the inarch_dischma_20241219.zip file. There is a short period of overlapping data in both files. The newest file contains the most up-to-date data. Data last updated 2025-08-21.

format: ZIP

en:
This repository contains data from the alpine Dischma watershed and its surroundings in eastern Switzerland and includes: (a) hourly hydrometeorological data with 100m spatial resolution, (b) remotely sensed snow depth data with 100m spatial resolution obtained at peak of winter, and (c) station measurements of variables such as snow depth and catchment runoff.
This dataset is particularly suited for (a) different simulation experiments using distributed and process-based models, including physics-based snow and hydrological models, (b) testing various snow data assimilation schemes, and (c) developing models representing snow-forest interactions.
The dataset is described in detail in:
Magnusson, J., Bühler, Y., Quéno, L., Cluzet, B., Mazzotti, G., Webster, C., Mott, R., and Jonas, T.: High-resolution hydrometeorological and snow data for the Dischma catchment in Switzerland, Earth Syst. Sci. Data Discuss. [preprint], https://doi.org/10.5194/essd-2024-374, in review, 2024.
This dataset was published within the INARCH project:
https://inarch.usask.ca/

cryosphere

display_name: cryosphere

dischma

display_name: dischma

hydrology

display_name: hydrology

inarch

display_name: inarch

modelling

display_name: modelling

snow

display_name: snow

en: A high-resolution snow and hydrometeorological dataset for the Dischma region in Switzerland


vegetation-height-model-sentinel-nfi

title_for_slug: vegetation-height-model-sentinel-nfi

en: nfi forest remote-sensing cnn switzerland vegetation-height sentinel-2

media_type: image/tiff

format: TIFF

en: Countrywide vegetation height models (VHM) were generated for Switzerland based on Copernicus Sentinel-2 imagery and the digital terrain model (DTM) swissALTI3D from the Swiss Federal Office of Topography swisstopo. A Convolutional Neural Network (CNN) model was trained to estimate the maximum vegetation height at the spatial resolution of the Sentinel-2 pixel of 10 m. Vegetation heights from the spatially higher-resolved VHM Lidar NFI were used as reference data for the CNN training. Within the framework of the Swiss National Forest Inventory (NFI), the VHMs were modelled annually based on available Sentinel-2 imagery from May – September of the respective year. Further details on the creation of the VHM Sentinel NFI can be found in the paper Jiang et al. (2023, https://doi.org/10.1016/j.srs.2023.100099). Contains modified Copernicus Sentinel data.

cnn

display_name: cnn

forest

display_name: forest

nfi

display_name: nfi

switzerland

display_name: switzerland

vegetation-height

display_name: vegetation-height

en: Vegetation Height Model Sentinel NFI


maintainer: EnviDat Support

en: leaf-senescence european-summer-drought fagus-sylvatica growth-reaction-to-drought-stress forests drought-2018

en: Drought and Beech: 1000 beeches data set

en: The data set comprises data from the Drought and Beech 1000 beeches project. The actual data file with monitoring data of 963 beech trees in northern Switzerland over four years (Drought_and_Beech_1000beeches_Data_v1.0.csv), a metadata file with column descriptions (Drought_and_Beech_1000beeches_Legend_v1.0.csv), and a file defining the different survey periods (Drought_and_Beech_1000beeches_Survey_periods_v1.0.csv).

en: This study investigated multi-year drought impacts on beech forests through a unique large-scale monitoring of 963 individual beech trees, which showed either premature leaf discoloration during the drought in summer 2018 or no visible damage. We conducted the study in two highly drought-affected regions in northern Switzerland and one less drought-affected region located further south. We quantified the development of crown dieback and tree mortality as well as secondary drought damage, i.e. the presence of bleeding cankers and bark beetle infestations, in these trees for three consecutive years. We also determined the impact of several potential climate- and stand-related (predisposing) factors on mortality and drought legacy processes.

european-summer-drought

display_name: european-summer-drought

fagus-sylvatica

display_name: fagus-sylvatica

forests

display_name: forests

growth-reaction-to-drought-stress

display_name: growth-reaction-to-drought-stress

leaf-senescence

display_name: leaf-senescence

en: Data on multi-year drought impacts on European beech in northern Switzerland


en: uncertainty climate-change-impact rain-on-snow cryosphere natural-climate-variability snow-water-equivalent

en: climate realizations

en: The dataset contains for three variables (snow water equivalent, surface water input and liquid precipitation) 50 realizations of current and future climate periods for two time horizons (mid end end of century), two emission senarions (RCP 4.5 and 8.5) and 10 climate model chains (all EUR11 chains within CH2018). To quantify natural climate variability for projections of snow conditions and resulting rain-on-snow (ROS) flood events, a weather generator was applied to simulate inherently consistent climate variables for multiple realizations of current and future climates at 100 m spatial and hourly temporal resolution over a 12 x 12 km high-altitude study area in the Swiss Alps. The output of the weather generator was used as input for subsequent simulations with an energy balance snow model. The data was extracted in 2021 from original model output.

climate-change-impact

display_name: climate-change-impact

natural-climate-variability

display_name: natural-climate-variability

rain-on-snow

display_name: rain-on-snow

snow-water-equivalent

display_name: snow-water-equivalent

uncertainty

display_name: uncertainty

educ

en: Education, culture and sport

en: Multiple realizations of daily snow water equivalent, surface water input and liquid precipitation projections for mid- and late-century


maintainer: Ariel Bergamini

en: functional-traits species-richness biodiversity-experiment biomass pandiv moss grassland fungicide nitrogen bryophytes

en: main data as used in Lin et al. 2025

format: XLS

en:
This dataset was used to analyse effects of different biodiversity and functional group treatments, fertilizer and fungicide applications as well as weeding of vascular plants on the species richness and species composition of bryophytes for the following publication: Lin M., Bergamini A., Pichon N.A., Allan E, Boch S. 2025. Nitrogen enrichment and vascular plant richness loss reduce bryophyte richness. Scientific Reports.
In this study we surveyed 96 of 216 2 m x 2 m experimental plots of the PaNDiv experiment, a large grassland field experiment in the Swiss lowlands (Pichon et al. 2020). In the PaNDiv experiment four experimental treatments were applied in a full-factorial design manipulating: (1) the nitrogen availability (through fertilization), (2) the presence of fungal pathogens (through fungicide application), (3) the functional composition of the vascular plant community (represented here by community-weighted mean (CWM) SLA), and (4) the vascular plant richness (sowing of either 1, 4, 8 or 20 species). To maintain the original sown vascular plant species richness and composition, one part of each plot (1.5 m × 2 m) was weeded, while the other part has been left unweeded since the beginning of the experiment (0.5 m × 2 m).
On each plot we surveyed two subplots, the unweeded subplot and a weeded subplot of the same area (0.5 m × 2 m). On each subplot we established a complete list of all bryophyte species together with an estimate of their cover.
The provided excel file contains three sheets:
1.	A sheet with raw species lists of all plots surveyed together with information on all treatments and an estimation of the percentage cover of vascular plants in a summer campaign in August 2022. Cover of bryophytes was estimated for each species in percent.
2.	A sheet with a list of all bryophyte species with its growth form (acroarpous/pleurocarpous)
3.	A sheet with some explantations
By means of the provided R code and the data in the excel file, all analyses can be repeated.
More details to the data sampled can be found in Lin et al (2025).

biodiversity-experiment

display_name: biodiversity-experiment

biomass

display_name: biomass

bryophytes

display_name: bryophytes

functional-traits

display_name: functional-traits

fungicide

display_name: fungicide

grassland

display_name: grassland

moss

display_name: moss

nitrogen

display_name: nitrogen

pandiv

display_name: pandiv

species-richness

display_name: species-richness

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data on bryophyte diversity and treatment factors in the PaNDiv experiment


en: digital-planning swiss-geodata geodata-processing geoinformation-system open-source raster-processing cable-yarding qgis-plugin digital-elevation-model seilaplan

en: DHM-Kacheln zusammenfügen

en: View video on youtube!

en:
In order to use the QGIS plugin ‘Seilaplan’ for digital cable line planning, a digital terrain model (DTM) is required. In this tutorial video, we show how to merge multiple DTM raster tiles into one file, using the QGIS tool ‘Virtual Raster’. This simplifies the digital planning of a cable line using the QGIS plugin ‘Seilaplan’. Please note that the tutorial language is German!

Link to Seilaplan website: https://seilaplan.wsl.ch

***************************

Für die Verwendung des QGIS Plugins Seilaplan zur digitalen Seillinienplanung ist ein digitales Höhenmodell (DHM) nötig. In diesem Tutorialvideo zeigen wir, wie man mit dem QGIS-Plugin Virtuelles Raster mehrere DHM-Kacheln zu einem einzigen Rasterfile zusammenfügen und abspeichern kann. Für die Seillinienplanung mit Seilaplan muss nun nur noch eine Datei, mein neues virtuelles Raster, ausgewählt werden.

Link zur Seilaplan-Website: https://seilaplan.wsl.ch

cable-yarding

display_name: cable-yarding

digital-elevation-model

display_name: digital-elevation-model

digital-planning

display_name: digital-planning

geodata-processing

display_name: geodata-processing

geoinformation-system

display_name: geoinformation-system

open-source

display_name: open-source

qgis-plugin

display_name: qgis-plugin

raster-processing

display_name: raster-processing

seilaplan

display_name: seilaplan

swiss-geodata

display_name: swiss-geodata

en: Seilaplan Tutorial: Merge DTM tiles


maintainer: Jonas Stillhard

en: swiss-plateau temperate-forests forest-in forest-reserves beech

en: Results TreMs

en: The file results_trems.csv contains results for the density of TreMs per ha.

en: Results habitat trees

en: The file results_habitat_trees.csv contains results for the number of habitat trees.

en: Lookup

en: The file lookup.csv contains description for the values shown in the 5 result tables.

en: Results lying deadwood

en: The file results_lying_deadwood.csv contains results of the lying deadwood survey.

en: Results trees

en:
The file results_trees.csv contains results of living, standing and lying and dead standing
trees as well as for stumps (trees found on the plot but broken / cut below 1.3 m).

en: Data description

media_type: application/pdf

en: This document briefly describes the datasets.

format: PDF

en: Results regeneration

en: The file results_regeneration.csv contains results of the regeneration survey.

en:
The Jorat is one of the largest continously forested areas in the Swiss Plateau. On a forested area of 778 ha, the Parc Naturel du Jorat (PNJ), a periurban parc, has been established in 2022. To document the initial state of the forest within the perimeter of the PNJ, a sample plot inventory (SPI) was carried out on 132 sample plots (SP) in winter 2021/22.
This dataset contains results from this sample plot inventory. It consists of the following files:
- results_trees.csv: Results for or living and dead trees.
- results_regeneration.csv: Results for trees with DBH < 7.0 cm, assessed in three height classes.
- results_lying_deadwood.csv: Results for lying deadwood, assessed no three line transects
- results_trems.csv: Results for occurence of tree related microhabitats (TreMs)
- results_habitat_trees.csv: Results for occurence / densities of trees carrying at least one TreM or with a DBH >= 80 for living trees or >= 36 cm for dead trees respectively.
- lookup.csv: Contains lookup tables which describe the respective results in-depth.
- data_description.pdf: Briefly describes the datasets mentioned above.

beech

display_name: beech

forest-in

display_name: forest-in

forest-reserves

display_name: forest-reserves

swiss-plateau

display_name: swiss-plateau

temperate-forests

display_name: temperate-forests

en: Sample plot inventory data form the Parc Naturel du Jorat


en: co2 picea-abies forest face soil nitrogen

en: Gross N mineralisation and nitrification

en: Gross rates of N mineralisation and nitrification (15N dilution)

mimetype: text/csv

en: Resin bags

en: Ammonium, nitrate and their 15N in resin bags

en: Water analyses

en: Analyses of water, especially soil solution

en: Soil C and N

en: Analyses of C, N and their stable isotopes in the soil, and soil pH

en: Collection points

en: Collection points under the trees

en: Collection of soil solution

en: Soil solution collected by suction cups

en: Data obtained in the free-air CO2 enrichment (FACE) experiment at Hofstetten, NW Switzerland, between 2009 and 2016. This dataset contains analyses of the soil solution throughout the experiment, especially for nitrate, as well as different analyses done at the end of the experiment: ammonium and nitrate captured by ion-exchange resin bags and extracted from soil cores, gross N mineralisation and nitrification measured by isotope dilution.

face

display_name: face

forest

display_name: forest

nitrogen

display_name: nitrogen

picea-abies

display_name: picea-abies

soil

display_name: soil

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Nitrogen availability under trees exposed to CO2 enrichment (FACE)


maintainer: Merin Reji Chacko

en: biomonitoring biodiversity-assessment spatial-ecology dna-metabarcoding environmental-dna

en: Field Metadata

en: Information concerning the locations and times of sampling, as well as the identity of the samplers and relevant comments.

en: Analysis and Figures

en: This zipped file includes R scripts and the datasets required to run the analyses. A README describes the columns in each dataset.

en: Genomic data

en: Fastq files, primer descriptions and the final output dataset.

en: This dataset contains the results of a five-day field excursion which the extent to which eDNA sampling can capture the diversity of a region with highly heterogeneous habitat patches across a wide elevation gradient through multiple hydrological catchments of the Swiss Alps. Using peristaltic pumps, we filtered 60 L of water at five sites per catchment for a total volume of 1 800 L. Using an eDNA metabarcoding approach focusing on vertebrates and plants, we detected 86 vertebrate taxa spanning 41 families and 263 plant taxa spanning 79 families across ten catchments. This dataset includes two sets of data. The first (Genomic data) includes all the necessary data for the bioinformatic pipeline, whereas the second (Analysis Figures) contains tidied data and scripts for the reproduction of all figures/analyses in the article describing this study.

biodiversity-assessment

display_name: biodiversity-assessment

biomonitoring

display_name: biomonitoring

dna-metabarcoding

display_name: dna-metabarcoding

environmental-dna

display_name: environmental-dna

spatial-ecology

display_name: spatial-ecology

en: Vertebrate and plant taxa recovered from 10 catchments in Vaud using an eDNA-metabarcoding approach


en: bayofbiscay atlantic-region metabarcoding edna fish-composition actinopterygii chondrichthyes teleo

en: Data access

en:
Environmental DNA complements scientific trawling in surveys of marine fish biodiversity (Dataset 2019)
In October 2019 we chose 15 sites from the 2019 EVHOE survey for eDNA sampling. The French international EVHOE bottom trawl survey is carried out annually during autumn in the BoB to monitor demersal fish resources. At each site, we sampled seawater using Niskin bottles deployed with a circular rosette. There were nine bottles on the rosette, each of them able to hold ∼5 l of water. At each site, we first cleaned the circular rosette and bottles with freshwater, then lowered the rosette (with bottles open) to 5 m above the sea bottom, and finally closed the bottles remotely from the boat. The 45 l of sampled water was transferred to four disposable and sterilized plastic bags of 11.25 l each to perform the filtration on-board in a laboratory dedicated to the processing of eDNA samples. To speed up the filtration process, we used two identical filtration devices, each composed of an Athena® peristaltic pump (Proactive Environmental Products LLC, Bradenton, Florida, USA; nominal flow of 1.0 l min–1 ), a VigiDNA 0.20 μm filtration capsule (SPYGEN, le Bourget du Lac, France), and disposable sterile tubing. Each filtration device filtered the water contained in two plastic bags (22.5 l), which represent two replicates per sampling site. We followed a rigorous protocol to avoid contamination during fieldwork, using disposable gloves and single-use filtration equipment and plastic bags to process each water sample. At the end of each filtration, we emptied the water inside the capsule that we replaced by 80 ml of CL1 conservation buffer and stored the samples at room temperature following the specifications of the manufacturer (SPYGEN, Le Bourget du Lac, France). We processed the eDNA capsules at SPYGEN, following the protocol proposed by Polanco-Fernández et al., (2020). We performed library preparation and sequencing at Fasteris (Geneva, Switzerland). Specifically, we prepared four libraries using the MetaFast protocol (a ligation-based method) and sequenced them separately. We carried out paired-end sequencing using a MiSeq sequencer (2 × 125 bp, Illumina, San Diego, CA, USA) on two MiSeq Flow Cell Kits (v3; Illumina), following the manufacturer’s instructions. We analysed the sequence reads using the OBITools package (http://metabarcoding.org/obitools; Boyer et al., 2016), following the protocol described by Valentini et al. (2016).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

actinopterygii

display_name: actinopterygii

atlantic-region

display_name: atlantic-region

bayofbiscay

display_name: bayofbiscay

chondrichthyes

display_name: chondrichthyes

edna

display_name: edna

fish-composition

display_name: fish-composition

metabarcoding

display_name: metabarcoding

teleo

display_name: teleo

en: Environmental DNA Marine France Evhoe 2019


en: teleo marine edna coral-reefs fish curacao fish-composition environmental-dna caribbean-region

en:
Fish taxonomic, functional and phylogenetic composition variations recovered from eDNA metabarcoding along the coast of Curacao

In February 2020, we collected a total of 20 water samples, from 10 stations, with two filtration replicates per station, in the two investigated coastal areas. Each station consisted of a transect of 2 km at an overall constant distance from the coast. We recorded the GPS coordinates at the start and end of the transect, which we used to map the transect positions. We conducted eDNA sampling by using a filtration device composed of an Athena® peristaltic pump (Proactive Environmental Products LLC, Bradenton, Florida, USA; nominal flow of 1.0 L/min), a VigiDNA® 0.20 μM cross-flow filtration capsule (SPYGEN, le Bourget du Lac, France) and disposable sterile tubing for each filtration capsule. We performed two filtration replicates in parallel on each side of a boat, at each station, for 30 min corresponding to a volume of ~30 L of water filtered by each capsule. At the end of each filtration, the water inside the capsules was emptied, and we filled the capsules with 80 ml of CL1 Conservation buffer (SPYGEN, le Bourget du Lac, France) and stored at room temperature. We followed a strict contamination control protocol in both field and laboratory stages (Valentini et al., 2016). Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).

caribbean-region

display_name: caribbean-region

coral-reefs

display_name: coral-reefs

curacao

display_name: curacao

fish

display_name: fish

marine

display_name: marine

educ

en: Education, culture and sport

en: Environmental DNA Marine Curacao 2020


maintainer: Yves Bühler

en: orthophoto wingtra dsm snow-depth-mapping photogrammetry uav drone-data

en: Data Access

en:
- DSM (10 cm resolution)
- Ortho (3 cm resolution)
- HS (10 cm resolution)
- original RGB drone images
- Agisoft Metashape Processing Report

All products are also available as a cloud optimized geotiff.

en: To map and assess snow depth on different dates, 9 flights were conducted in the winter season of 2020/21 at the Latschüelfurgga in Davos. The data was captured with a Sony RX1R II mounted on a Wingtra drone and was processed with the Agisoft Metashape software. High-resolution DSMs, orthomosaics and snow height rasters, as well as the original RGB images from each flight are available.

drone-data

display_name: drone-data

dsm

display_name: dsm

orthophoto

display_name: orthophoto

photogrammetry

display_name: photogrammetry

snow-depth-mapping

display_name: snow-depth-mapping

uav

display_name: uav

wingtra

display_name: wingtra

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Photogrammetric Drone Data Latschuelfurgga


maintainer: Izabela Bujak-Ozga

en: erlenbach catchment drainage-network dataset dynamics precipitation data catchment-data drainage water-level channel

en: The dataset contains time series of water levels, precipitation measured in the two sub-catchments of the Erlenbach catchment and its vicinity during summer and autumn 2021, as well as flowing drainage network lengths calculated for these areas using the CEASE method developed by the authors. Detailed description of the dataset is provided in the documentation.

catchment

display_name: catchment

catchment-data

display_name: catchment-data

channel

display_name: channel

data

display_name: data

dataset

display_name: dataset

drainage

display_name: drainage

drainage-network

display_name: drainage-network

dynamics

display_name: dynamics

erlenbach

display_name: erlenbach

precipitation

display_name: precipitation

water-level

display_name: water-level

en: Short-term Drainage Density Dynamics Dataset for the Erlenbach Catchment


maintainer: Athanasios Nenes

en: cloud-droplets raclets sigma-w cloud-modeling supersaturation wolfgangpass

en: Predicted cloud droplet numbers (kappa=0.1) Davos Wolfgang

en:
In-situ measurements of aerosol size distributions along with updraft velocities collected from a wind Doppler Lidar are coupled with a state-of-the art droplet activation parameterization (Morales and Nenes, 2014) to determine the cloud droplet number and maximum in-cloud supersaturation that can potentially form over the Davos Wolfgang station between February 24 and March 8 2019. For this, as a sensitivity test, a hygroscopicity parameter of 0.1 is assumed, which is the lower limit determined from the analysis carried out for Weissfluhjoch (https://www.envidat.ch/dataset/ccn-hygroscopicity-predicted-cloud-droplet-numbers-weissfluhjoch). The data file contains:

* Date and time (DD/MM/YYYY hh:mm:ss) in UTC
* The wind-lidar derived standard deviation of updraft velocities (sigma-w) in m/s, used to apply the parameterization employing a single characteristic velocity (Morales and Nenes, 2010)
* The maximum predicted cloud parcel supersaturation (Smax%)
* The total in-situ aerosol number concentration (Naer) in cmˉ³, measured by the SMPS
* The predicted cloud droplet numbers (Nd) in cmˉ³
* The activation fraction (%)

en: Predicted cloud droplet numbers (kappa=0.25) Weissfluhjoch

en:
In-situ measurements of aerosol size distributions along with updraft velocities collected from a wind Doppler Lidar are coupled with a state-of-the art droplet activation parameterization (Morales and Nenes, 2014) to determine the cloud droplet number and maximum in-cloud supersaturation that can potentially form over the Davos Wolfgang station between February 24 and March 8 2019. For this, as a sensitivity test, a hygroscopicity parameter of 0.25 is assumed, which is the upper limit determined from the analysis carried out for Weissfluhjoch (https://www.envidat.ch/dataset/ccn-hygroscopicity-predicted-cloud-droplet-numbers-weissfluhjoch). The data file contains:

* Date and time (DD/MM/YYYY hh:mm:ss) in UTC
* The wind-lidar derived standard deviation of updraft velocities (sigma-w) in m/s, used to apply the parameterization employing a single characteristic velocity (Morales and Nenes, 2010)
* The maximum predicted cloud parcel supersaturation (Smax%)
* The total in-situ aerosol number concentration (Naer) in cmˉ³, measured by the SMPS
* The predicted cloud droplet numbers (Nd) in cmˉ³
* The activation fraction (%)

en: Cloud droplet properties were predicted between February 24 and March 8 2019 for the measurement site Davos Wolfgang (1630 m a.s.l., LON: 9.853594, LAT: 46.835577). Droplet calculations are carried out with the physically based aerosol activation parameterization of Morales and Nenes (2014), employing the “characteristic velocity” approach of Morales and Nenes (2010). Aerosol size distribution observations required to predict the cloud droplet numbers and maximum in-cloud supersaturation are obtained from a Scanning Mobility Particle Size Spectrometer (SMPS) instrument deployed at Davos Wolfgang (https://www.envidat.ch/dataset/aerosol-data-davos-wolfgang). The required vertical velocity measurements are derived from the wind Doppler Lidar (https://www.envidat.ch/dataset/lidar-wind-profiler-data) deployed at the same station and are extracted from the first bin of the instrument, being 200 m above ground level. The hygroscopic properties of the particles measured at Davos Wolfgang could not be estimated, owing to a lack of concurrent CCN measurements. As a sensitivity test, droplet calculations are performed assuming two different values of the aerosol hygroscopicity parameter, 0.1 and 0.25, based on the analysis carried out for Weissfluhjoch. Additional information can be found in Section 2.3 [here](https://acp.copernicus.org/preprints/acp-2020-1036/).

cloud-droplets

display_name: cloud-droplets

cloud-modeling

display_name: cloud-modeling

raclets

display_name: raclets

sigma-w

display_name: sigma-w

supersaturation

display_name: supersaturation

wolfgangpass

display_name: wolfgangpass

en: Predicted cloud droplet numbers Davos Wolfgang


en: urban-region europe development-priorities spatial-information strategic-plans

en: Planning intentios

en:
The present dataset is part of the report titled Gradinaru S.R., Hersperger A.M., Schmid F. (2021). Deriving Planning Intentions from written planning documents. Report on CONCUR Project- From plans to land change: how strategic spatial planning contributes to the development of urban regions.
The data corresponds to the data collected as part of the DPI Method for deriving all PIs contained in a plan (open coding) as detailed in section 4 of the report. The method involved reading the plans to break down of information in meaningful discrete “incidents” or planning intentions. To identify the planning intentions, the starting points were represented by a) the structuring of the plans in chapters and sub chapters and b) the themes that the plans addressed. Thus, the collected information was not grouped according to pre-defined categories of planning intentions, but rather put together as a list of intentions as revealed by each plan. As a result, we provide, for each case study, a document (named [Urban region name] PI as defined in the plan) which contains:
	Date when the information was filled in.
	Name of the urban region and analysed strategic spatial plan .
	A list of all planning intentions contained in a plan, with each PI being addresses as follows:
	Name of PI as it appears in the plan
	Translated name of the PI (i.e. short name for easy understanding of the meaning)
	Explanation regarding the meaning of the PI
	Why the PI is considered a priority for the urban region
	Spatial information on the PI (text and cartographic representations).
In total, 14 documents are available, one for each case study. Documents contain up to 20 pages of information extracted from the plans together with explanations and notes taken during plan reading.

development-priorities

display_name: development-priorities

europe

display_name: europe

spatial-information

display_name: spatial-information

strategic-plans

display_name: strategic-plans

urban-region

display_name: urban-region

educ

en: Education, culture and sport

en: Planning intentions in strategic plans of European urban regions


maintainer: Michael Nobis

en: computer-vision invasive-species plants automatic-detection artificial-intelligence biological-invasions

en: Detected occurrences of Ailanthus altissima along highways on the Swiss Plateau. The number of image tiles in which the species was recognized is shown (Fig. 23 in the report). Image coordinates of the middle and side strips can be displayed separately in the interactive map.

en: Detected occurrences of Senecio inaequidens along highways on the Swiss Plateau. The number of image tiles in which the species was recognized is shown (Fig. 25 in the report). Image coordinates of the middle and side strips can be displayed separately in the interactive map.

en: Detected occurrences of Senecio inaequidens along highways on the Swiss Plateau. To reduce false-positives, only images in which the species was recognized in at least three of 16 image tiles are considered as occurrences (Fig. 40 in the report). Image coordinates of the middle and side strips can be displayed separately in the interactive map.

en: Detected occurrences of Ailanthus altissima along highways on the Swiss Plateau. To reduce false-positives, only images in which the species was recognized in at least three of 16 image tiles are considered as occurrences (Fig. 38 in the report). Image coordinates of the middle and side strips can be displayed separately in the interactive map.

en:
Transport infrastructure such as **highways** are important corridors for the spread of invasive species. In this project, an automated detection and mapping of **two invasive alien plant species** was developed and applied along highways in the **Swiss Central Plateau**, based on **artificial intelligence (AI, Deep Learning)**. The two target species are **tree of heaven *(Ailanthus altissima)*** and **narrow-leaved ragwort *(Senecio inaequidens)***.
The data is part of the project report and shows the mapping results in **interactive maps**. Technically speaking, these are **self-contained HTML files** that can be displayed with standard web browsers. To reduce the file size, the downloads are provided in zip format.
**Report**: [https://www.mobilityplatform.ch/de/research-data-shop/product/1690](https://www.mobilityplatform.ch/de/research-data-shop/product/1690)
**Project**: [https://www.wsl.ch/en/projects/automated-detection-of-invasive-alien-plants-along-highways/](https://www.wsl.ch/en/projects/automated-detection-of-invasive-alien-plants-along-highways/)

artificial-intelligence

display_name: artificial-intelligence

automatic-detection

display_name: automatic-detection

biological-invasions

display_name: biological-invasions

computer-vision

display_name: computer-vision

invasive-species

display_name: invasive-species

plants

display_name: plants

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Automated detection of invasive alien plants along highways


maintainer: Leo Gallus Bont

en: accessible-forest forest geoprocessing seilaplan openstreetmap qgis

en: Power lines vector data (close to the area of the sample forest range)

mimetype: application/zip

en: Juypter Notebook for Data Preparation

en: Digitised sample perimeter

en: Forest vector data (for sample forest range)

en: Railways vector data (close to the sample forest range)

en: Preview

mimetype: image/png

en: Juypter Notebook for Data Preparation (online)

en: DEM (for the area of the sample forest range)

mimetype: image/tiff

en:
This dataset contains open vector data for railways, forests and power lines, as well an open digital elevation model (DEM) for a small area around a sample forest range in Europe (Germany, Upper Bavaria, Kochel Forest Range, some 70 km south of München, at the edge of Bavarian Alps).
The purpose of this dataset is to provide a documented sample dataset in order to demonstrate geospatial preprocessing at FOSS4G2019 based on open data and software. This sample has been produced based on several existing open data sources (detailed below), therefore documenting the sources for obtaining some data needed for computations related to forest accessibility and wood harvesting. For example, they can be used with the open methodology and QGIS plugin [Seilaplan]( https://doi.org/10.16904/envidat.software.1) for optimising the geometric layout cable roads or with additional open software for computing the forest accessibility for wood harvesting.
The vector data (railways, forests and power lines) was extracted from OpenStreetMap (data copyrighted OpenStreetMap contributors and available from https://www.openstreetmap.org). The railways and forests were downloaded and extracted on 18.05.2019 using the open sources QGIS (https://www.qgis.org) with the QuickOSM plugin, while the power lines were downloaded a couple of days later on 23.05.2019.

Additional notes for vector data:
Please note that OpenStreeMap data extracts such as forests, roads and railways (except power lines) can also be downloaded in a GIS friendly format (Shapefile) from http://download.geofabrik.de/ or using the QGIS built-in download function for OpenStreetMap data. The most efficient way to retrieve specific OSM tags (such as power=line) is to use the QuickOSM plugin for QGIS (using the Overpass API - https://wiki.openstreetmap.org/wiki/Overpass_API) or directly using overpass turbo (https://overpass-turbo.eu/). Finally, the digitised perimeter of the sample forest range is also made available for reproducibility purposes, although any perimeter or area can be digitised freely using the QGIS editing toolbar.

The DEM was originally adapted and modified also with QGIS (https://www.qgis.org) based on the elevation data available from two different sources, by reprojecting and downsampling datasets to 25m then selecting, for each individual raster cell, the elevation value that was closer to the average. These two different elevation sources are:

- Copernicus Land Monitoring Service - EU-DEM v.1.1 (TILE ID E40N20, downloaded from https://land.copernicus.eu/imagery-in-situ/eu-dem/eu-dem-v1.1; this original DEM was produced by the Copernicus Land Monitoring Service “with funding by the European Union” based on SRTM and ASTER GDEM)
- Digitales Geländemodell 50 m Gitterweite (https://opendata.bayern.de/detailansicht/datensatz/digitales-gelaendemodell-50-m-gitterweite/), produced by the Bayerische Vermessungsverwaltung – www.geodaten.bayern.de –and downloaded from http://www.geodaten.bayern.de/opendata/DGM50/dgm50_epsg4258.tif

This methodology was chosen as a way of performing a basic quality check, by comparing the EU-DEM v.1.1 derived from globally available DEM data (such as SRTM) with more authoritative data for the randomly selected region, since using authoritative data is preferred (if open and available). For other sample regions, where authoritative open data is not available, such comparisons cannot longer be performed.

Additional notes DEM: a very good DEM open data source for Germany is the open data set collected and resampled by Sonny (sonnyy7@gmail.com) and made available on the Austrian Open Data Portal http://data.opendataportal.at/dataset/dtm-germany. In order to simplify end-to-end reproducibility of the paper planned for FOSS4G2019, we use and distribute an adapted (reprojected and resampled to 25 meters) sample of the above mentioned dataset for the selected forest range.

This sample dataset is accompanied by software in Python, as a Jupiter Notebook that generates harmonized output rasters with the same extent from the input data. The extent is given by the polygon vector dataset (Perimeter). These output rasters, such as obstacles, aspect, slope, forest cover, can serve as input data for later computations related to forest accessibility and wood harvesting questions. The obstacles output is obtained by transforming line vector datasets (railway lines, high voltage power lines) to raster. Aspect and slope are both derived from the sample digital elevation model.

accessible-forest

display_name: accessible-forest

forest

display_name: forest

geoprocessing

display_name: geoprocessing

openstreetmap

display_name: openstreetmap

qgis

display_name: qgis

seilaplan

display_name: seilaplan

en: Sample Geodata and Software for Demonstrating Geospatial Preprocessing for Forest Accessibility and Wood Harvesting at FOSS4G2019


en: streamflow runoff alptal groundwater stable-water-isotopes

en: Deuterium groundwater and baseflow August 2017

en:
This data is collected at the Studibach catchment (Alptal, Switzerland) by Leonie Kiewiet (University of Zürich)
For any questions about the data, please contact leonie.kiewiet@geo.uzh.ch or leoniekiewiet@gmail.com

Date: Date (year-month-day)
Location: Well number or outlet
X: X coordinate (CH1903 LV03)
Y: Y coordinate (CH1903 LV03)
riparian: riparian wells (i.e. from the riparian-like cluster as presented in Kiewiet et al. (2019)) are marked a one, all other wells are marked a zero
d.D (per mil): Deuterium composition (per mil)

en: Precipitation and discharge event C

en:
This data is collected at the Studibach catchment (Alptal, Switzerland) by Leonie Kiewiet (University of Zürich)
With any questions about the data, please contact leonie.kiewiet@geo.uzh.ch or leoniekiewiet@gmail.com

datetime: Date (year-month-day) and time (hours:minutes:seconds) in UTC
Q: Discharge in mm per hour at catchment outlet (697234,210472)
P: Rainfall in mm per hour averaged for two rain gauges (697494,210675) and (698004, 210680)

en: Deuterium rainfall extra event

en:
This data is collected at the Studibach catchment (Alptal, Switzerland) by Leonie Kiewiet (University of Zürich)
For any questions about the data, please contact leonie.kiewiet@geo.uzh.ch or leoniekiewiet@gmail.com

datetime: Date (year-month-day) and time (hours:minutes:seconds) in UTC
P d.D: Deuterium composition of the rainfall samples (per mil)
X: X coordinate (CH1903 LV03)
Y: Y coordinate (CH1903 LV03)

en: Deuterium groundwater and baseflow October 2016

en: Deuterium rainfall event C

en: Deuterium streamwater event A

en:
This data is collected at the Studibach catchment (Alptal, Switzerland) by Leonie Kiewiet (University of Zürich)
For any questions about the data, please contact leonie.kiewiet@geo.uzh.ch or leoniekiewiet@gmail.com

datetime: Date and time of sample collection (UTC; year-month-day, hours:minutes)
Q d.D: Deuterium composition (per mil) of streamwater sampled at the catchment outlet (697234,210472); the first sample is used as pre-event streamflow sample

en: Deuterium rainfall event A

en: Deuterium streamwater event C

en: Deuterium rainfall event B

en: Deuterium groundwater and baseflow October 2017

en: Deuterium streamwater event B

en: Precipitation and discharge event A

en: Deuterium streamwater extra event

en: Precipitation and discharge extra event

en: Precipitation and discharge event B

en:
This dataset includes discharge and rainfall measurements and deuterium compositions of streamflow, rainfall and groundwater, for four rainfall events and three baseflow snapshot campaigns in the Studibach (Alptal, Switzerland). More specifically, we present the following data:

- Specific discharge at the catchment outlet at 5-minute resolution (mm per hour);
- Rainfall at 5-minute resolution (mm per hour);
- Rainfall deuterium composition (‰);
- Stormflow deuterium composition (‰);
- Groundwater and baseflow deuterium compositions (‰).

For the files containing rainfall and discharge timeseries (QP), and rainfall and streamwater deuterium compositions ("Deuterium_Rainfall" and "Deuterium_Streamwater"), we added the corresponding event identifier (A, B, C or extra) to the file names. For the files containing the groundwater and baseflow deuterium values ("Deuterium_Snapshot") we added the sample collection date to the file name. We included the X and Y coordinates for each data point (coordinate system: CH1903 LV3) as well as the date and time (UTC).

More information on the data collection and preparation can be found in Kiewiet et al. (in review). A detailed description of the baseflow snapshot campaigns can also be found in Kiewiet et al., 2019.

en: Discharge, rainfall, and deuterium compositions of streamwater, rainwater and groundwater, for four rainfall events in the Studibach, Alptal, Switzerland


en: edna metabarcoding eukaryotes namibia bivalves

en: Data access

en: Please use cyberduck to download for now

en:
Monitoring terrestrial mammals through eDNA in rivers of northern Namibia
In 2022, we collected 20 water samples from 10 stations two rivers of Namibia. Samples were taken from the side of the river. At each station, we performed two filtration replicates using a peristaltic pump to conduct environmental DNA (eDNA) sampling. Each filtration targeted a maximum duration of 30 minutes, during which approximately 30 liters of water were filtered through each capsule. After filtration, the water inside the capsules was removed, and the capsules were filled with 50 ml of conservation buffer for preservation at room temperature. We followed strict contamination control protocols throughout both the fieldwork and laboratory processes, adhering to the guidelines of Valentini et al. (2016). We used eDNA primers targeting bacteria, bivalves, fish, vertebrates (V05) and all Eukaryotes (Euka03). To prevent contamination, each sample was processed using disposable gloves and single-use filtration equipment. The MiSeq Reagent Kit v3 (2x75 bp) (Illumina, San Diego, CA, USA) was used for paired-end sequencing at a theoretical sequencing depth of 200,000 reads per sample.
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

bivalves

display_name: bivalves

edna

display_name: edna

eukaryotes

display_name: eukaryotes

metabarcoding

display_name: metabarcoding

namibia

display_name: namibia

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Environmental DNA Freshwater Namibia Namibia 2022


en: sdms frost-change-velocity precipitation aridity ground-temperature soil

en: Mean annual temperature modified from CHELSA

en: Soil pH modified from SoilGrids

en: Soil clay content modified from SoilGrids

en: Soil organic carbon content modified from SoilGrids

en: Precipitation of driest quarter modified from CHELSA

en: Frost change frequency modified from CHELSA

en: Precipitation seasonality from CHELSA

en: Mean diurnal range modified from CHELSA

en: The dataset contains seven environmental layers (average annual temperature, aridity [annual precipitation divided by annual potential evapotranspiration], frost change frequency, precipitation in the driest quarter, mean diurnal temperature range, and precipitation seasonality) modified from CHELSA (https://chelsa-climate.org/) and three soil layers (soil organic matter content, pH water, and clay content) modified from SoilGrids (https://soilgrids.org/).

aridity

display_name: aridity

frost-change-velocity

display_name: frost-change-velocity

ground-temperature

display_name: ground-temperature

precipitation

display_name: precipitation

sdms

display_name: sdms

soil

display_name: soil

en: Environmental layers for SDM simulations (GDPlants)


en: fungi soil-microbiome latitudinal-gradient microbial-biodiversity prokaryotes soil-mulitfunctionality

en: ITS_Han et al_EUgradient.xlsx

en: Diversity of fungi (ITS region sequencing) containing: 1) ASV (Amplicon Sequence Variants) table: abundance of ASV in each sample and 2) Taxonomy table: taxonomic classification of each ASV.

en: 16S_Han et al_EUgradient.xlsx

en: Diversity of prokaryotes (16S gene sequencing) containing: 1) ASV (Amplicon Sequence Variants) table: abundance of ASV in each sample and 2) Taxonomy table: taxonomic classification of each ASV.

en: Metadata, soil properties and soil microbial functions for each sites across the European gradient.

en: The diversity and network complexity of prokaryotic and fungal communities and their relationships with soil multifunctionality (SMF) – an integrative index for C-, N- and P-cycling functions – was investigated along a 3,000-km latitudinal transect across Europe (37° to 62°N), spanning biomes from Mediterranean drylands, temperate to boreal forests.

fungi

display_name: fungi

latitudinal-gradient

display_name: latitudinal-gradient

microbial-biodiversity

display_name: microbial-biodiversity

prokaryotes

display_name: prokaryotes

soil-microbiome

display_name: soil-microbiome

soil-mulitfunctionality

display_name: soil-mulitfunctionality

en: Soil microbial diversity and multifunctionality across European biomes


maintainer: Océane Hames

en: snow-transport antarctica openfoam arctic-sea-ice mosaic snow-deposition

en: Neumayer III simulations

en:
Snow distribution results around Neumayer Station III obtained for the sensitivity analysis and comparison to measurements. The file contains several sub-folders, namely:
-COMP: simulation output for the comparison to measurements;
-FLOW: simulation output for the study of wind forcing impact;
-simulation_exampleCase: example case of a snowBedFoam simulation with the reference Neumayer Station mesh;
-SNOW: simulation output for the study of snow properties impact;
-STRUCT: simulation output for the study of structure properties impact.

en:
OpenFOAM-2.3.0. scripts containing the implemented Eulerian-Lagrangian snow transport model.

The code file provided here is not updated. The most recent version of the script can be found on the WSL/SLF GitLab repository: https://gitlabext.wsl.ch/atmospheric-models/snowbedfoam-v1-0.git

en:
OpenFOAM-5.0 scripts containing the implemented Eulerian-Lagrangian snow transport model.
The code file provided here is not updated. The most recent version of the script can be found on the WSL/SLF GitLab repository: https://gitlabext.wsl.ch/atmospheric-models/snowbedfoam-v1-0.git

en: Paper Draft

en: This is the initial draft of the paper where the snowBedFoam 1.0. results are tested against Terrestrial Laser Scan (TLS) measurements of snow dynamics on Arctic sea ice (MOSAiC expedition). It highlights the numerical limitations of our model as well as the measurement uncertainties, which may occur in such extreme environments.

en: MOSAiC Met City preliminary (Level 2) wind data

en:
Extract from the preliminary MOSAiC atmospheric data (Level 2) for the time period 6th to 13th of November, 2019.
This data was used to set up the fluid forcing parameters in the snowBedFoam simulations on MOSAiC sea ice. It is being published in this repository with the kind permission from Matthew Shupe and his team.
The final processed and quality controlled version of this dataset (Level 3) has not been published yet. A complete reference will be added in this description once it is released.

en: Snowdrift measurements around Neumayer Station III

en: Files containing the topographical data barometrically measured in June 2009 around the German Antarctic Research station Neumayer III. Those measurements are compared to the snowBedFoam simulations to assess the ability of the model to reproduce real snow distribution observations.

en:
snowBedFoam 1.0. is a snow transport solver implemented in the computational fluid dynamics software OpenFOAM. It is adapted from the standard multi-phase flow solver DPMFoam for application in snow-influenced environments.
To simulate aeolian snow transport, snowBedFoam 1.0. handles coupled Eulerian–Lagrangian phases, which involve a finite number of particles (snow) spread in a continuous phase (air). The snow erosion and deposition are modelled through physics-based equations similar to the ones employed in the well-established LES-Lagrangian Stochastic Model (Comola and Lehning, 2017 ; Sharma et al., 2018 ; Melo et al., 2022). This modelling approach is computationally intensive and thus adapted to simulate snow movement and distribution on small scale terrain.
First, snowBedFoam 1.0. was applied to topographical data collected on Arctic sea ice during the MOSAiC expedition (Clemens-Sewall, 2021). Together with atmospheric data from the MOSAiC Met City (Shupe et al., 2021) used for the fluid forcing, the model was able to accurately simulate the zones of erosion and deposition of snow along a complex ice ridge structure (Hames et al., 2022).
Second, snowBedFoam 1.0. was used to simulate the snow distribution around the German Antarctic research station Neumayer Station III. The effect of snow properties, fluid forcing and aerodynamic structures on the snow accumulation were assessed.
snowBedFoam 1.0 was implemented in 2 different OpenFOAM versions, namely OpenFOAM-2.3.0 and OpenFOAM-5.0. The latter offers more options for turbulence models and boundary conditions. The fundamental model equations were not changed from one implementation to the other, thus both still correspond to snowBedFoam 1.0. The two branches are called snowBedFoam-v1-2.3.0 (OpenFOAM-2.3.0) and snowBedFoam-v1-5.0 (OpenFOAM-5.0). The core codes of snowBedFoam 1.0. are directly accessible on the WSL/SLF GitLab repository (more details in the Resources section).

antarctica

display_name: antarctica

arctic-sea-ice

display_name: arctic-sea-ice

mosaic

display_name: mosaic

openfoam

display_name: openfoam

snow-deposition

display_name: snow-deposition

snow-transport

display_name: snow-transport

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: snowBedFoam: an OpenFOAM Eulerian-Lagrangian solver for modelling snow transport


en: snow swe uas snow-depth remote-sensing

en: HS map Brämabül, 14. April 2015

en:
10 cm resolution
15 cm accuracy

en: .tfw file

en: coordinates for the .tif raster

en:
This snow depth map was generated 14 January 2015, close to peak of winter accumulation, applying Unmanned Aerial System digital surface models with a spatial resolution of 10 cm. The covered area is 285'000 m2 at the top of Brämabüel, 2490 m a.s.l. covering all expositions. Coordinate system: CH1903LV03.

A detailed description is given here:

Bühler, Y., Adams, M. S., Bösch, R., and Stoffel, A.: Mapping snow depth in alpine terrain with unmanned aerial systems (UASs): potential and limitations, The Cryosphere, 10, 1075-1088, 10.5194/tc-10-1075-2016, 2016.

Abstract:
Detailed information on the spatial and temporal distribution, and variability of snow depth (HS) is a crucial input for numerous applications in hydrology, climatology, ecology and avalanche research. Nowadays, snow depth distribution is usually estimated by combining point measurements from weather stations or observers in the field with spatial interpolation algorithms. However, even a dense measurement network is not able to capture the large spatial variability of snow depth in alpine terrain.
Remote sensing methods, such as laser scanning or digital photogrammetry, have recently been successfully applied to map snow depth variability at local and regional scales. However, such data acquisition is costly, if manned airplanes are involved. The effectiveness of ground-based measurements on the other hand, is often hindered by occlusions, due to the complex terrain or acute viewing angles. In this paper, we investigate the application of unmanned aerial systems (UAS), in combination with structure-from-motion photogrammetry, to map snow depth distribution. Such systems have the advantage that they are comparatively cost-effective and can be applied very flexibly to cover also otherwise inaccessible terrain. In this study we map snow depth at two different locations: a) a sheltered location at the bottom of the Flüela valley (1900 m a.s.l.) and b) an exposed location (2500 m a.s.l.) on a peak in the ski resort Jakobshorn, both in the vicinity of Davos, Switzerland. At the first test site, we monitor the ablation on three different dates. We validate the photogrammetric snow depth maps using simultaneously acquired manual snow depth measurements. The resulting snow depth values have a root mean square error (RMSE) better than 0.07 to 0.15 m on meadows and rocks and a RMSE better than 0.30 m on sections covered by bushes or tall grass. This new measurement technology opens the door for efficient, flexible, repeatable and cost effective snow depth monitoring for various applications, investigating the worlds cryosphere.

remote-sensing

display_name: remote-sensing

snow

display_name: snow

snow-depth

display_name: snow-depth

swe

display_name: swe

uas

display_name: uas

en: UAS based snow depth maps Brämabüel, Davos, CH


maintainer: Anna Braun

en: snow numerical-simulations metamorphism microstructure fem

author: EnviDat

en: Simulation parameters and outputs for "Towards a physically and microstructure-based equation for the evolution of the specific surface area in snow"

format: ODS

en:
In the associated study [1], evolution of randomly generated bi-continuous microstructures that resemble real snow microstructures has been investigated. The control of the ambient conditions (temperature and temperature gradient) and of the physical processes at play on the rate of change of the specific surface area have been evaluated. Based on the evaluation, a new physically-informed governing law for the coarsening of microstructures has been proposed. This law accurately predicts the simulation outputs under various conditions. Furthermore, a potential parametrization of newly introduced material properties has been proposed and evaluated on snow coarsening data.
This dataset contains the parameters used for the mesh generation and the finite-element simulations. The output parameters of simulations, such as the ice fraction, surface of the ice-air interface per total volume, mean curvature and growth rate are provided.
[1]: A.Braun, K. Fourteau, S. Frei, M. Lehning, H. Löwe: Towards a physically and microstructure-based equation for the evolution of the specific surface area in snow, Journal of Glaciology, accepted for publication in 2024

fem

display_name: fem

metamorphism

display_name: metamorphism

microstructure

display_name: microstructure

numerical-simulations

display_name: numerical-simulations

en: Simulation parameters and outputs for towards a physically and microstructure-based equation for the evolution of the specific surface area in snow


en: madagascar endemism landscape-evolution geology flora

en: Escarpment evolution drives the diversification of the Madagascar flora

en: This upload contains the data (species checklist, species range maps, time-calibrated phylogenies, topographic change, etc.) generated, analyzed, and presented in the paper .

en: Data v1.0

en: Although much of the endemic biodiversity of Madagascar can be attributed to its isolation as an island in the Indian Ocean, the high rates of speciation throughout its geologic history suggest an influence of local-scale landscape dynamics. The topographic evolution of Madagascar is dominated by the formation of high-relief continental rift escarpment and we argue that the erosion and landward retreat of this topography creates habitat heterogeneity that has served as a speciation pump for the island. The highest plant richness is found along the escarpment and is characterized by steady diversification rates over the last 45 Ma. Modeled landscape evolution by escarpment retreat demonstrates opportunities for allopatric speciation by transient habitat fragmentation through multiple mechanisms, including catchment expansion, isolation of highland remnants and formation of topographic and river barriers The segregation of floral phylogenetic turnover parallel to the escarpment is consistent with these mechanisms and indicates the importance of erosion-driven landscape dynamics on speciation.

endemism

display_name: endemism

flora

display_name: flora

geology

display_name: geology

landscape-evolution

display_name: landscape-evolution

madagascar

display_name: madagascar


maintainer: Virginie Marques

en: edna sper01 switzerland vertebrates spermatophytes vert01 environmental-dna freshwater

en: Data access

en:
Catchment-based sampling of river eDNA integrates terrestrial and aquatic biodiversity of alpine landscapes

From 22-Jun-2020 to 26-Jun-2020, we sampled five sites comprising one low, two intermediate and two high-elevation sites per catchment (Fig. 1a). We visited two catchments per day—one in the morning and one in the afternoon—for a total of ten catchments. All samples per catchment were collected within a maximum four-hour period by three groups of samplers. The intermediate and high-elevation sites were situated along two tributaries leading into the low-elevation site of the river. We used three filters for each relative elevation class and filtered 60 L per relative elevation class. We sampled 30 L per tributary for a combined volume of 60 L at the intermediate and high-elevation sites. In total, 180 L were sampled in total per catchment. A filtration device composed of either the Athena® peristaltic pump (Proactive Environmental Products LLC; 1 L/min nominal flow) or the Subspace® underwater peristaltic pump (Subspace Pictures; 1 L/min nominal flow), combined with a VigiDNA® 0.2 µM cross-flow filtration capsule (VigiDNA, SPYGEN) was used in order to filter a large water volume. We used a finer mesh than the recommended VigiDNA® 0.45 µM cross-flow filtration capsule to maximise the capture of biological material since mountain water does not transport high quantities of sediments. For each filtration capsule, we used disposable sterile tubing. At the end of each filtration, we emptied the water inside the capsules, replaced it with 80 ml of CL1 conservation buffer (SPYGEN), and stored it at room temperature. We followed a strict contamination control protocol in both field and laboratory stages (Goldberg et al. 2016; Valentini et al. 2016). Each water sample was processed using disposable gloves and single-use filtration equipment. We used two primer sets targeting vertebrates (Vert01, forward: − TTAGATACCCCACTATGC, reverse: − TAGAACAGGCTCCTCTAG, mean marker length: 97 bp) and spermatophytes (g-h/Sper01, forward: − GGGCAATCCTGAGCCAA, reverse: CCATTGAGTCTCTGCACCTATC, mean marker length: 48 bp). Though both primers are relatively broad with low species-level resolution, we selected them as the goal was to minimise cost and effort and maximise the identification of a broad range of taxa which can represent the species assemblages of the region. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).

edna

display_name: edna

environmental-dna

display_name: environmental-dna

freshwater

display_name: freshwater

spermatophytes

display_name: spermatophytes

switzerland

display_name: switzerland

vertebrates

display_name: vertebrates

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Environmental DNA Freshwater Switzerland VaudCatchment Modipl 2020


maintainer: Jürg Schweizer

en: avalanche-size avalanche-forcasting avalanche-activity snow-avalanche danger-level

en: Snow avalanche data

en: This data file includes data on the avalanches mapped in the region of Davos.

en: Readme

en: The Readme file contains the description of the two data files.

mimetype: application/pdf

en: Avalanche activity data

en: This data file includes data on the avalanche activity per day aggregated from the avalanche data.

en:
These data include all avalanches that were mapped in the region of Davos, Switzerland during the winters 1998-1999 to 2018-2019 (21 years), in total 13,918 avalanches, and the corresponding forecast danger level valid on the day of avalanche occurrence, 3533 days and danger ratings in total.

This avalanche activity data set was analysed and results published by Schweizer et al. (2020). They found that the
number of avalanches per day strongly increased with increasing danger level, but avalanche size was poorly related to avalanche danger level.

The data are provided in two files: the first includes the avalanche data (13,918 records); the second includes the avalanche activity per day (3533 records).
Please refer to the Read-me file for further details on the data.

These data are the basis of the following publication:
Schweizer, J., Mitterer, C., Techel, F., Stoffel, A. and Reuter, B., 2020. On the relation between avalanche occurrence and avalanche danger level. The Cryosphere, 14, 737-750, https://doi.org/10.5194/tc-14-737-2020.

avalanche-activity

display_name: avalanche-activity

avalanche-forcasting

display_name: avalanche-forcasting

avalanche-size

display_name: avalanche-size

danger-level

display_name: danger-level

snow-avalanche

display_name: snow-avalanche

en: Snow avalanche data Davos, Switzerland, 1999-2019


maintainer: Frank Hagedorn

en: treeline-ecosystems biomass-dynamics climate-change plant-community soil-nutrients plant-traits

en: Data on soils, tree biomass, plant nutrients, rock mineralogy, climate of treeline ecosystems in Khibiny mountains, Kola Penninsula, Russia

en: Data on soil nutrients and charcteristics, tree and understory biomass, foliage nutrients, mineralogy, soil temperature and moisture along an elevation gradient from boreal forest to mountain tundra in teh Khibiny mountains (Kola Penninsula, Russia). Samples were taken along two gradients at 7 elevation level either under tree canopy (tree) and in open areas (open).

biomass-dynamics

display_name: biomass-dynamics

climate-change

display_name: climate-change

plant-community

display_name: plant-community

plant-traits

display_name: plant-traits

soil-nutrients

display_name: soil-nutrients

treeline-ecosystems

display_name: treeline-ecosystems


en: microct snow intercomparison icecube specific-surface-area

en: IceCube and MicroCT data

en: The file contains all micro-CT and IC measurements for snow types A, B, C, D and E used in our study. All samples were processed (and stored) in a cold laboratory at -15°C.

en: TARTES simulations

en: Jupyter notebook with TARTES simulations.

en: artificial_snow_data set

en: The file contains all micro-CT and IC measurements of the artificial snow data set. The data set was originally produced to investigate the influence of black carbon on SSA measurements.

en: SMP measurement files for snow types A, B, C and D.

en: Influence of black carbon on the measurement of the specific surface of snow with the near infrared method - Philipp Baumann

en: These experiments investigate different possible errors by measuring the specific surface area (SSA) of snow with the near infrared method. The influence of black carbon on this measurement was disproved, the theory was therefore validated. It shows that sunlight has no influence on the measurement with the IceCube. Wind drift snow as thin layer on the sample can increase the measured value of the specific surface by a few percent. This could be part of the error, observed in former measurements at SLF. As reference for the measured SSA values with the near infrared method, computer tomography was used to verify the SSA values.

en: Grain survey of snow particles

en: The file contains all measurements of the artificial particles for snow types A, B, C, D and E, including the artificial particle mass in the Petri dish.

en: Statistics of samples

en: The file contains all data for the plot in figure 1 of the co-located density and SSA measurement at Summit, Greenland in May 2015, conducted by Schneebeli, Proksch, Schmid.

en: The specific surface area (SSA) of different snow types were measured with the IceCube instrument and the Scanco Medical microCT 40. In addition, the snow particles created during the preparation of IceCube samples were counted. The difference in SSA between these instruments is explained by the formation of the surface particles. A numerical simulation using TARTES simulation support the observations.

icecube

display_name: icecube

intercomparison

display_name: intercomparison

microct

display_name: microct

snow

display_name: snow

specific-surface-area

display_name: specific-surface-area


intratrait

maintainer: Christian Rixen

title_for_slug: intratrait

en: elevation-range climate-change cold-adapted-plants neighbour-interactions elevation-gradient plant-traits

en: Plant trait data along elevation gradients on mountains

en:
This data set was used to test whether species specialized to high elevations or with narrow elevational ranges show more conservative (i.e. less variable) trait responses across their elevational distribution, or in response to neighbours, than species from lower elevations or with wider elevational ranges. We did so by studying intraspecific trait variation of 66 species along 40 elevational gradients in four countries (Switzerland, Australia, New Zealand, China) in both hemispheres. As an indication of potential neighbour interactions that could drive trait variation, we also analysed plant species’ height ratio, its height relative to its nearest neighbour.
The following traits and parameters were measured and are available in this data set:
As an indication of plant stature, we measured vegetative and generative height, where vegetative height was distance from soil to highest vegetative leaf and generative height was distance to the highest point on the reproductive shoot. As a measure of reproductive investment, we noted the presence of flowers on the randomly chosen individuals (see below). As a measure of individual and genet basal area, we measured individual plant and patch diameters, in two dimensions (along the largest diameter and perpendicular to it). In clonal plant species, plant diameter was equivalent to an individual rosette, whereas patch diameter referred to the whole genet and could represent the size of a tuft, tussock or cushion. For genera with more singular growth forms (e.g., some Gentiana species) plant and patch diameter were the same. The two diameter measurements were made at right angles, allowing estimates of patch and plant areas to be calculated as an ellipse (i.e., area = 0.5 a 0.5 b Π). All traits were measured on ten randomly selected individuals per site. Flower count data was considered in a binary fashion on a per individual basis (because for some species individuals only produce one flower when flowering) so that the presence or absence of flower(s) was a nominal value between 0 and 10 for each species at each site. We then collected at least three leaves (up to 30 for small and light leaves) from each of the first three individuals selected from each species for determination of leaf dry matter content (LDMC) and specific leaf area (SLA). For calculations of LDMC and SLA, fresh leaves were scanned on a flatbed scanner to determine leaf area. Leaves were then weighed on a balance to a precision of +/- 0.001g, prior to being air dried and reweighed with a balance to a precision of +/- 0.0001g. LDMC was calculated by dividing dry leaf mass by fresh leaf mass. SLA was calculated by dividing leaf area by dry leaf mass. Additionally, within an area of 10 cm diameter around the target individual, we determined the tallest neighbouring species and measured its vegetative and generative height, and estimated the percent cover of the target species, other vegetation, rock, and bare soil.
For more details see Rixen et al. 2022, Journal of Ecology.

cold-adapted-plants

display_name: cold-adapted-plants

elevation-gradient

display_name: elevation-gradient

elevation-range

display_name: elevation-range

neighbour-interactions

display_name: neighbour-interactions

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: intratrait


maintainer: Vanessa Burg

en: bioenergy biogas review manure switzerland

en: Biogas from animal manure in Switzerland: energy potential, technology development and resource mobilization

en: Aim of this white paper is to provide decision-makers, administrations and stakeholders with the most current research findings in order to promote the optimal use of bioenergy from manure in the Swiss energy transition. For this purpose, the results of the Swiss competence center for bioenergy research - SCCER BIOSWEET - are summarized and presented in a broader context. If nothing else is mentioned, the results refer to Switzerland and in case of the feedstock to the domestic biomass potentials.

bioenergy

display_name: bioenergy

biogas

display_name: biogas

manure

display_name: manure

review

display_name: review

switzerland

display_name: switzerland


en: urban-biodiversity biodiversity urban urban-ecology fungi fungal-pathogen insects birds

en: Data tables including individual bird data with biometry, prey species from faecal samples, and fungi species from swab samples.

en:
We captured birds in urban parks and peri-urban forests in the cities of Lugano and Zurich. The urban sites were located in an urban forest (Lugano) and in a cemetery (Zurich), and the bird assemblages were comparable with those of the surrounding forests.
We captured individual birds during sessions lasting multiple days using mist-nets, concentrating the activities within 3-4 hours after sunrise and before sunset. We extracted birds from nets using single-use nitrile gloves and gently wiped their body parts with a dry foam swab MW940 (Medical Wire & Equipment), which was then placed in a screw-capped tube (2 ml), which was previously filled with 1 ml ethanol puriss. (Sigma-Aldrich) under sterile conditions.Then, we marked each bird with an alphanumeric leg band, identified the species, determined the sex and age whenever possible, measured for relevant biometrics (e.g. wing chord), the amount of body fat and pectoral muscle (i.e. body condition), and weighed.
Afterwards, we placed each bird in a disposable paper bag within a cotton bag that ensured respiration and left it for few minutes in a safe and calm place to allow for defecation and the collection of faecal samples. The faecal sample was collected from insectivorous and omnivorous birds, and few granivorous birds that are known to occasionally eat invertebrates, such as the house sparrow Passer domesticus.
After releasing the bird, we stored the faecal sample in a screw-capped tube (2 ml), which was previously filled with 1 ml ethanol puriss. (Sigma-Aldrich) under sterile conditions. We wore single-use nitrile gloves and used sterile toothpicks to collect solid samples. The tubes were initially stored in the refrigerator during the field campaign and no later than seven days after collection at -20°C until prepared for DNA extraction.
DNA extraction and library preparation was performed at WSL Phytopathology facilites, Sequencing was performed at Lausanne Genomic Technologies Facility (University of Lausanne; [https://wp.unil.ch/gtf/](https://wp.unil.ch/gtf/)) on an AVITI benchtop sequencing system (Element Biosciences). Bioinformatics was performed at the Genetic Diversity Center (ETH Zurich) using a custom pipeline.

biodiversity

display_name: biodiversity

birds

display_name: birds

fungal-pathogen

display_name: fungal-pathogen

fungi

display_name: fungi

insects

display_name: insects

urban

display_name: urban

urban-biodiversity

display_name: urban-biodiversity

urban-ecology

display_name: urban-ecology

en: Urban bird capture data with prey species and fungal community


maintainer: Marco Moretti

en: city4bees urban-biodiversity urban-ecosystems wild-bees urbanization bettergardens resource-availability pollinator-experiment honeybees gardens zurich beekeeping

en: Metadata for the predictor and response dataset

en:
The data contains the following columns:

  SiteID: numeric, the identity of the garden where the bee was sampled.
  Taxonname: character, species name
  Lecty: numeric discreet, a mesure of specialisation degree. Levels: 1 = monolectic; 2=oliolectic; 3=polilectic
  Pheno.start= numeric discreet, the starting week of the flying activity.
  Pheno.end= numeric discreet, the ending week of the flying activity.
  Pheno.duration=numeric discreet, Pheno.end - Pheno.start
  Daytime.activity = numeric continuous, individual-level measure of the day hour when the bee was sampled
  ITD = numeric continuous, individual-level measure of the InterTegular Distance, a metric of mobility in mm.
  Rel.tongue.length =numeric continuous, individual-level measure of the relative tongue length (Tongue length / ITD), a metric of specilaisation degree, in mm.

en: Response and predictors used for the SEMs

en: Metadata for the predictors and response dataset

en:
Mean, standard deviation , minimum and maximum values of six functional traits. The data has the following structure:
- Bee_species: bee scientific name
- mean_trait: mean value
- sd_trait: standard deviation
_min_trait: minimum value
- max_trait: maximum value
- trait: the six traits used. ITD = Intertegular distance (mm); Pheno.duration = duration of the phenology; Pheno.start = start of the phenology; Pheno.end = end of the phenology; Rel.tongue.length= relative tongue length (mm); Daytime.activity = daily activity (h)
DistNichePart: functional dissimilarity in a multidimentional trait space defined by five traits between wild bee individuals of a wild bee species and the honeybee individuals. Values are at the species level.

en:
Cities are socio-ecological systems that filter and select species, thus establishing unique species assemblages and biotic interactions. Urban ecosystems can host richer wild bee communities than highly intensified agricultural areas, specifically in resource-rich urban green spaces such as allotment and family gardens. At the same time, urban beekeeping has boomed in many European cities, raising concerns that the fast addition of a large number of managed bees could deplete the existing floral resources, triggering competition between wild bees and honeybees. The data has been used to investigated the interplay between resource availability and the number of honeybees at local and landscape scales and how this relationship influences wild bee diversity.

This dataset contains the raw and processed data supporting the findings from the paper: "Low resource availability drives feeding niche partitioning between wild bees and honeybees in a European city".

The data contains:
1. Bee trait measurements at the species and individual-level of five functional traits.
2. The values of the feeding niche partitioning (functional dissimilarity to honeybees)
3. The predictors of resource availability and beekeeping intensity at local and landscape scales used in the modelling of the paper for the 23 experimental sites.

beekeeping

display_name: beekeeping

bettergardens

display_name: bettergardens

gardens

display_name: gardens

honeybees

display_name: honeybees

pollinator-experiment

display_name: pollinator-experiment

resource-availability

display_name: resource-availability

urban-ecosystems

display_name: urban-ecosystems

urbanization

display_name: urbanization

wild-bees

display_name: wild-bees

zurich

display_name: zurich

en: Niche partitioning between wild bees and honeybees


backward-trajectories

maintainer: Michael Sprenger

title_for_slug: backward-trajectories

en: atmospheric-dynamics raclets lagrangian-analysis alps cosmo backward-trajectories complex-topopgraphy

en: Backward Trajectories

en: The trajectories are started from surface up to 5000 m altitude, with an equidistant vertical spacing of 200 m, and calculated 120 h backward in time. As long as the trajectories stay in the COSMO1 domain (essentially the Alpine region), as run operationally at MeteoSwiss, the COSMO analysis wind fields are used. When the trajectories leave this domain, they are extended further backward in time based on ECMWF analysis data. The following fields are traced along the trajectories: longitude, latitude, geopotential height, pressure, specific humidity, temperature and surface topography. Furthermore, it is indicated for each trajectory time instance on which model data, COSMO or ECMWF, the trajectory time is based. Finally, the trajectories are started every hour in the specified time period, and positions and fields are available every 10 min. Each day is saved as a separate file. The last 8 digits of the file names indicate the starting date of the trajectories.

en: Backward trajectories were calculated from two positions: Davos Wolfgang (LON: 9.85361, LAT: 46.83551) and Weissfluhjoch (LON: 9.80646 LAT: 46.83304) for the time period February 2 until March 27 2019 using COSMO or ECMWF, respectively.

alps

display_name: alps

atmospheric-dynamics

display_name: atmospheric-dynamics

backward-trajectories

display_name: backward-trajectories

complex-topopgraphy

display_name: complex-topopgraphy

cosmo

display_name: cosmo

lagrangian-analysis

display_name: lagrangian-analysis

raclets

display_name: raclets

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Backward  Trajectories


distributed-acoustic-sensing-brienz

maintainer: EnviDat Support

title_for_slug: distributed-acoustic-sensing-brienz

en: rockfall seismic landslide early-warning machine-learning natural-hazard

en: Data access

en:
This dataset contains the Distributed Acoustic Sensing (DAS), radar detection data used for training and result analysis in the GRL paper titled `Automatic Monitoring of Rock-Slope Failures Using Distributed Acoustic Sensing and Semi-Supervised Learning`.
The DAS dataset (both waveform and cross-spectral density matrices), extracted features, labeled dataset, two trained models (feature extraction model and xgboost classification model), scripts to reproduce the whole training and classification processes, and a notebook to replicate the result analysis part are provided under the MIT license. To provide a reasonable data size, we chunked the raw data to a few hundred channels which we used in our project.
Abstract:
Effective use of the wealth of information provided by Distributed Acoustic Sensing (DAS) for mass movement monitoring remains a challenge. We propose a semi-supervised neural network tailored to screen DAS data related to a series of rock collapses leading to a major failure of approximately 1.2 million cubic meters on 15 June 2023 in Brienz, Eastern Switzerland. Besides DAS, the dataset from 16 May to 30 June 2023 includes Doppler radar data for partially ground-truth labeling. The proposed algorithm is capable of distinguishing between rock-slope failures and background noise, including road and train traffic, with a detection precision of over 95%. It identifies hundreds of precursory failures and shows sustained detection hours before and during the major collapse. Event size and signal-to-noise ratio (SNR) are the key performance dependencies. As a critical part of our algorithm operates unsupervised, we suggest that it is suitable for general monitoring of natural hazards.

early-warning

display_name: early-warning

landslide

display_name: landslide

machine-learning

display_name: machine-learning

natural-hazard

display_name: natural-hazard

rockfall

display_name: rockfall

seismic

display_name: seismic

en: Distributed Acoustic Sensing Brienz


maintainer: Mahdi Jafari

en: vapor-transport openfoam snow-density-profile convection-in-snow numerical-simulation

en: snowpackBuoyantPimpleFoam

en:
This zipped folder includes (1) the source code files, (2) an example case for simulation, and (3) an instruction how to compile and use the new solver.

Note that the most updated version of snowpackBuoyantPimpleFoam can be found in the WSL/SLF GitLab repository: https://gitlabext.wsl.ch/snow-models/snowpackbuoyantpimplefoam

en: snowpackBuoyantPimpleFoam is a two-phase solver implemented to model convection of water vapor with phase change in snowpacks. This new solver is based on the standard solver of buoyantPimpleFoam in the open-source fluid dynamics software, OpenFOAM 5.0 (www.openfoam.org).

convection-in-snow

display_name: convection-in-snow

numerical-simulation

display_name: numerical-simulation

openfoam

display_name: openfoam

snow-density-profile

display_name: snow-density-profile

vapor-transport

display_name: vapor-transport

en: snowpackBuoyantPimpleFoam: an OpenFOAM Eulerian–Eulerian two-phase solver for modelling convection of water vapor in snowpacks