maintainer: Virginie Marques

en: edna indian-ocean fish-composition teleo environmental-dna laperouse marine coral-reef

en: Data access

en: Please use cyberduck to download for the moment

en:
Fish environmental DNA data set collected in the shallow seamount of La Pérouse located between Madagascar and Réunion Island

In 2019, we sampled the shallow seamount of La Pérouse, located between Madagascar and Réunion Island in the WIO. La Pérouse is an extinct volcano with a summit depth at 60 m below the sea surface. The plateau of the summit has a maximum length of 12 km and a maximum width of 4 km. One side of the seamount might have collapsed in the past, leading to a less common crescent-shaped summit. The abyssal plains that surround this isolated pinnacle are at a depth of 5000 m. Despite its proximity to Réunion Island (160 km northwest), La Pérouse and its surroundings are still poorly studied.
To sample eDNA in this location we used a submersible pump (Subspace, Geneva, Switzerland; nominal flow of ~ 1.0 L/min) to collect samples at various depths during close circuit rebreather dives. The pump has an internal battery and can be activated underwater allowing in situ filtration directly at the targeted habitat and depth. The filtration lasted for 30 min to collect a total water volume of ~ 30 L. During close circuit rebreather dives, water samples from various depths, ranging from 60 to 140 m below the sea surface, were collected using only the Submersible method (eight stations: no replicates). Out of the eight water samples, six were collected during the day, while two were collected at night (IS2_1 at 62 m and IS7_1 at 100–125 m). We applied this filtration protocols to collect and filter water throughout a VigiDNA® 0.2 μM cross-flow filtration capsule (SPYGEN, le Bourget du Lac, France) using disposable sterile tubing for each filtration capsule. After the filtration process, the remaining water in the capsules was emptied. The capsules were then filled with 80 ml of lysis conservation buffer (CL1 buffer SPYGEN, le Bourget du Lac, France) and stored at room temperature in the dark. At La Pérouse, a total of eight water samples were collected during the MONT LA PÉROUSE expedition (https://gombessa-expeditions.com/mont-la-perouse/) on board the ship La Curieuse to the seamount La Pérouse from October 27th to November 5th 2019. We followed a strict contamination control protocol in both field and laboratory stages. Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

coral-reef

display_name: coral-reef

edna

display_name: edna

environmental-dna

display_name: environmental-dna

fish-composition

display_name: fish-composition

indian-ocean

display_name: indian-ocean

laperouse

display_name: laperouse

marine

display_name: marine

teleo

display_name: teleo

en: Environmental DNA Marine France LaPerouse 2019


causal-effect-of-lup

maintainer: EnviDat Support

title_for_slug: causal-effect-of-lup

en: annual-effect plan-evaluation land-use-change land-use-planning psm-did

state: active

type: dataset

en: causal-effect-of-lup

media_type: application/zip

en:
Data.dbf contains the varibles of 1662 villages in Zhangzhou Cities
PSM_DID.R can re-produce the results

format: ZIP

en:
Title: Does zoning contain built-up land expansion? Causal evidence from Zhangzhou City, China.

Research objective: Built-up land zoning is an imporatant policy measure of land use planning (LUP) to contain built-up land expansion in China. We used a difference-indifference model with propensity score matching to estimate the average and annual effect of built-up land zoning on built-up land expansion in Zhangzhou City, China between 2010 and 2020.

Data: Data.dbf contains the varibles of 1662 villages in Zhangzhou Cities in 1995, 2000, 2005, 2010, 2013, 2015, 2018, and 2020.
XZQDM2 is villages' unique administrative ID;
Area is the land area of village i;
Dis2water is the Euclidean distance from village i to the nearest waterbody;
Dis2coastl is the Euclidean distance from village i to the nearest coastline;
Dis2city is the the Euclidean distance from village i to the city center;
Dis2county is the the Euclidean distance from village i to the nearest county center;
Elevation is the the average elevation within village i;
Dis2road is the the Euclidean distance from village i to the nearest road;
Nei_Built_ is the the area of built-up land (Nei Built.upit) in the neighboring villages of village i in year t;
Treated is a binary variable, Treated = 1 to the villages that were partially or entirely located inside the development-permitted zones, and Treated = 0 to the villages that were entirely located outside the development-permitted zones;
Intensity is the percentage of land that was assigned to the development-permitted zones in village i;
Year represent the year in 1995, 2000, 2005, 2010, 2013, 2015, 2018, and 2020;
BuLE is the dependent variable, representing built-up land expansion in village i in year t;
Town is town' unique administrative ID.

Method: First, we employed propensity score matching to overcome the selection bias and satisfy the parallel trend
assumption. Second, we built four Difference-in-Difference models to estimate the average and annual effect.

annual-effect

display_name: annual-effect

land-use-change

display_name: land-use-change

land-use-planning

display_name: land-use-planning

plan-evaluation

display_name: plan-evaluation

psm-did

display_name: psm-did

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Causal effect of LUP


maintainer: Anita Risch

en: subalpine ecosystem-multifunctionality swiss-national-park invertebrates exclusion ecosystem-coupling grazing vertebrates ecosystem-functions grassland

en: Datafile

en:
ID: Plot ID composited of Fence & Treatment number (90 plots total)

Grassland: Name of the six subalpine grasslands where the exclosure setups were erected. In large grasslands (GRIM, MING, STAB), we established four hierarchical exclosure setups (two in short- and two in tall-grass vegetation), whereas in the small grasslands (BOTS, DADA, MARG) only one setup was erected per vegetation type. BOTS = Val dal Botsch, GRIM = Grimmels, MING = Val Mingér, STAB = Alp Stabelchod, DADA = Stabelchod da daint, MARG = Margunet

Fence: Number of exclosure setup (1 - 18). Note that uneven numbers (1,3,5,7,9,11,13,15,17) represent setups established on short-grass vegetation, even numbers (2,4,6,8,10,12,14,16,18) setups established in tall-grass vegetation
Vegetation	Vegetation type, 1 = short-grass vegetation, 2 = tall-grass vegetation; (9 replicate fences on each vegetation type)
Treatment	Progressive animal exclusion, numbers indicate which animals had access to the plot: 1 = Large/medium/small mammals, and invertebrates have access ("L/M/S/I"), 2 = Medium/small mammals, and invertebrates have access (“M/S/I”), 3 = Small mammals and invertebrates have access (“S/I”), 4 = Invertebrates have access (“I”), 5 = No animals have access (“None”)

Bulkden:	Fine fraction soil bulk density (g cm-3)

Soil.moist	: Soil moisture (%)

Soil.org.C: Rhizosphere soil C content (%)

pH: Soil pH

Nema.PC1: First principal component (PC1) of principal component analysis (PCA) of the soil nematode community composition

Nema.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil nematode community composition

Micro.PC1: 	First principal component (PC1) of principal component analysis (PCA) of the soil microbial community composition

Micro.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil microbial community composition

Abv.Inv.PC1: First principal component (PC1) of principal component analysis (PCA) of the aboveground-dwelling invertebrate community composition

Abv.Inv.PC2: Second principal component (PC2) of principal component analysis (PCA) of the aboveground-dwelling invertebrate community composition

Arthr.PC1: First principal component (PC1) of principal component analysis (PCA) of the soil arthropod community composition

Arthr.PC2: Second principal component (PC2) of principal component analysis (PCA) of the soil arthropod community composition

Plant.PC1: First principal component (PC1) of principal component analysis (PCA) of the plant community composition

Plant.PC2: Second principal component (PC2) of principal component analysis (PCA) of the plant community composition

Root.biomass: Root biomass (g m-2)

Micro.biomass	: Microbial biomass carbon (mg kg-1)

Plant.richness: Plant species richness

Plant.N: Plant tissue nitrogen content (%)

Soil.N.min: Soil net nitrogen mineralisation (kg ha-1 season)

Soil.resp: Soil carbon dioxide emissions (soil respiration; g m-2 h-1)

format: XLS

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:
 > Risch AC, Ochoa-Hueso R, van der Putten WH, Bump JK, Busse MD, Frey B, Gwiazdowicz DJ, Page-Dumroese DS, Vandegehuchte ML, Zimmermann S, Schütz M. Size-dependent loss of aboveground animals differentially affects grassland ecosystem coupling and functions. 2018. Nature Communications 9: 3684. [doi: 10.1038/s41467-018-06105-4](https://doi.org/10.1038/s41467-018-06105-4).

Please cite this paper together with the citation for the datafile.

#Methods
Study sites
The experimental exclosure setups were installed within the SNP (IUCN category Ia preserve; Dudley 2008), in south-eastern Switzerland. The park covers 172 km2 of forests and subalpine and alpine grasslands along with scattered rock outcrops and scree slopes. The entire area has been protected from human impact (no hunting, fishing, camping or off-trail hiking) since 1914. Large, fairly homogenous patches of short- and tall-grass vegetation, which originate from different historical management and grazing regimes, cover the park’s subalpine grasslands entirely. Short-grass vegetation developed in areas where cattle used to rest (nutrient input) prior to the park’s foundation (14th century to 1914) (Schütz and others 2003, 2006) and is dominated by lawn grass species such as Festuca rubra L., Briza media L. and Agrostis capillaris L. (Schütz and others 2003, 2006). Today, this vegetation type is intensively grazed by diverse vertebrate and invertebrate communities that inhabit the park and consume up to 60% of the available biomass (Risch and others 2013). Tall-grass vegetation developed where cattle formerly grazed, but did not rest, and is dominated by rather nutrient-poor tussocks of Carex sempervirens Vill. and Nardus stricta L. (Schütz and others 2003, 2006). This vegetation type receives considerably less grazing, with only roughly 20% of the biomass consumed (Risch and others 2013). Consequently, the two vegetation types together represent a long-term trajectory of changes in grazing regimes. Underlying bedrock of all grasslands is dolomite, which renders these grasslands rather poor in nutrients regardless of former and current land-use regimes.
Experimental design
To progressively exclude aboveground vertebrate and invertebrate animals, we established 18 size-selective exclosure setups (nine in short-grass, nine in tall-grass vegetation) distributed over six subalpine grasslands across the SNP (Risch and others 2013, 2015). Elevation differences of exclosure locations did not exceed 350 m (between 1975 and 2300 m a.s.l.). The exclosures were established immediately after snowmelt in spring 2009 and were left in place for five consecutive growing seasons (until end of 2013). They were, however, temporarily dismantled every fall (late October after first snowfall) to protect them from avalanches. They were re-established in the same location every spring immediately after snowmelt. Each size-selective exclosure setup consisted of five plots (2 x 3 m) that progressively excluded aboveground vertebrates and invertebrates from large to small. The plots are labelled according to the guilds that had access to them “L/M/S/I”, “M/S/I”, “S/I”, “I”, “None”; L = large mammals, M = medium mammals, S = small mammals, I = invertebrates, None = no animals had access. As we only had permission to have the experimental setup in place for five consecutive growing seasons, the experiment had to be completely dismantled in the late fall of 2013 and all material removed from the SNP.
Our exclosure design was aimed at excluding mammalian herbivores, but naturally also excluded the few medium and small mammalian predators, as well as the entire aboveground invertebrate food web. A total of 26 large to small mammal species can be found in the SNP, but large apex predators are missing (wolf, bear, lynx) . Reptiles, amphibians and birds are scarce to absent in the subalpine grasslands under study. Only two reptile species occur in the park and they are confined to rocky areas that warm up enough for them to survive. One frog species spawns in an isolated pond far from our grasslands. Only three bird species occasionally feed on the subalpine grasslands. Using game cameras (Moultrie 6MP Game Spy I-60 Infrared Digital Game Camera, Moultrie Feeders, Alabaster, AL, USA), we did observe that the medium- and small-sized mammals (marmot/hares and mice) were not afraid to enter the fences and feed on their designated plots. We never spotted reptiles, amphibians or birds on camera. We distinguished between 59 higher aboveground-dwelling invertebrate taxa that our size-selective exclosures excluded (see also methods for aboveground-dwelling invertebrates below).
The “L/M/S/I” plot (not fenced) was located at least 5 m from the 2.1 m tall and 7 x 9 m large main electrical fence that enclosed the other four plots. The bottom wire of this fence was mounted at 0.5 m height and was not electrified to enable safe access for medium and small mammals, while fencing out the large ones. Within each main fence, we randomly established four 2 x 3 m plots separated by 1-m wide walkways from one another and from the main fence line: 1) the “M/S/I” plots were unfenced, allowing access to all but the large mammals; 2) the “S/I” plots (10 x 10 cm electrical mesh fence) excluded all medium-sized mammals. Note that the bottom 10 cm of this fence remained non-electrified to enable safe access for small mammals; 3) the “I” plots (2 x 2 cm metal mesh fence) excluded all mammals. We double-folded the mesh at the bottom 50 cm to reduce the mesh size to smaller than 1 x 1 cm openings; and 4) the “None” plots were surrounded by a 1 m tall mosquito net (1.5 x 2 mm) to exclude all animals. The top of the plot was covered with a mosquito-meshed wooden frame mounted to the corner posts (roof). We treated these plots a few times with biocompatible insecticide (Clean kill original, Eco Belle GmbH, Waldshut-Tiengen, Germany) to remove insects that might have entered during data collection or that hatched from the soil, but amounts were negligible and did not impact soil moisture conditions within these plots.
To assess whether the design of the “None” exclosure (mesh and roof) affected the response variables within the plots and, therefore, influenced the results, we established an additional six “micro-climate control” exclosures (one in each of the six grasslands) (Risch and others 2013, 2015). These exclosures were built as the “None” exclosures but were open at the bottom (20 cm) of the 3-m side of the fence facing away from the prevailing wind direction to allow invertebrates to enter. A 20-cm high and 3-m long strip of metal mesh was used to block access to small mammals. Thus, this construction allowed a comparable micro-climate to the “None” plots, but also a comparable feeding pressure by invertebrates to the “I” plots. We compared various properties within these exclosures against one another to assess if our construction altered the conditions in the “None” plots. We showed that differences in plant (e.g., vegetation height, aboveground biomass) and soil properties (e.g., soil temperature, moisture) found between the “I” and the “None” treatments were not due to the construction of the “None” exclosure, but a function of animal exclusions, although the amount of UV light reaching the plant canopy was significantly reduced (Risch and others 2013).
Aboveground invertebrate sampling
Aboveground invertebrates were sampled with two different methods to capture both ground- and plant-dwelling organisms: 1) we randomly placed two pitfall traps (67 mm in diameter, covered with a roof) filled with 20% propylene glycol in one 1 x 1 m subplot of the 2 x 3 m treatment plots in spring 2013 (May) and emptied them every two weeks until late September 2013 (Vandegehuchte and others 2017b, 2018). A pitfall trap consisted of a plastic cylinder (13 cm depth, 6.75 cm diameter). Within each cylinder we placed a 100 ml plastic vial with outer diameter 6.70 cm and on top of the cylinder we placed a plastic funnel to guide the invertebrates into the vials. Each trap was cover with a cone-shaped and transparent plastic roof to protect the trap from rain (Vandegehuchte and others 2017b, 2018). Note that in the “None” plots only one trap was placed as control to check for effectiveness of the exclosure. 2) We vacuumed all invertebrates from a 60 x 60 cm area on another 1 x 1 m subplot with a suction sampler (Vortis, Burkhard manufacturing CO, Ltd., Rickmansworth, Hertfordshire, UK) every month from June to September 2013 (Vandegehuchte and others 2017b, 2018). For this purpose, we quickly placed a square plastic frame (60 x 60 x 40 cm) with a closable mosquito mesh sleeve attached to the top edge into the plot from the outside. The suction sample was then inserted into through the sleeve and operated for 45 s to collect the invertebrates (Vandegehuchte and others 2017b, 2018).
We sorted the ≈100 000 individuals collected with both methods by hand and identified each individual morphologically to the lowest taxonomic level feasible (59 taxa, including orders, suborders, subfamilies, families; phylum for Mollusca). These taxa belonged to the following feeding types: 19 herbivores, 16 detritivores, 9 predators, 8 mixed feeders, 5 omnivores and 2 non-classified feeders (or not feeding as adults) (Vandegehuchte and others 2017b). We summed the numbers from the two pitfall traps and the suction sampling over the course of the 2013 season to represent the aboveground invertebrate abundance and community composition of a plot. Note: we did not specifically attempt to catch flying invertebrates with e.g., sticky traps, thus a few flying insects may have been missed with our vacuum sampling approach.
Sampling of plant properties
The vascular plant species composition was assessed at peak biomass every summer (July) by estimating the frequency of occurrence of each species with the pin count method in each plot (Frank and McNaughton 1990). A total of 172 taxa occurred within our 90 plots and we calculated plant species richness for each plot separately. We used the 2013 data in this study. Plant quality was assessed every year in July and September; here we use plant quality at the end of the experiment (September 2013). Two 10 x 100 cm wide strips of vegetation per plot were clipped, combined, dried at 65°C, and ground (Pulverisette 16, Fritsch, Idar-Oberstein, Germany) to pass through a 0.5 mm sieve. Twenty randomly selected samples across all treatments were analysed for N (Leco TruSpec Analyser, Leco, St. Joseph, Michigan, USA) (Vandegehuchte and others 2015). Nitrogen concentrations of the other samples were then estimated from models established for the experiment and the entire SNP relating Fourier transform-near infrared reflectance (FT-NIR) spectra to the measured values of N using a multi-purpose FT-NIR spectrometer (Bruker Optics, Fällanden, Switzerland) (Vandegehuchte and others 2015). Root biomass was sampled every fall by collecting five 2.2 cm diameter x 10 cm deep soil samples (Giddings Machine Company, Windsor, CO, USA) per plot (450 samples year-1). The samples were dried at 30 °C and roots were sorted from the sample by hand. We sorted each sample for 1 h which allowed to retrieve over 90% of all roots present in the samples (Risch and others 2013). The roots were then dried at 65 °C for 48 and weighed to the nearest mg. We averaged the values per plot and used the 2013 data only in this study.
Sampling of edaphic communities
In 2009, 2010, and 2011 we collected three composited soil samples (5 cm diameter x 10 cm depth; AMS Samplers, American Falls, ID, USA) and assessed bacterial community structure using T-RFLP profiling (Liu and others 1997; Blackwood and others 2003; Hodel and others 2014). We detected a total of 89 operational taxonomic units (OTUs). These values are in accordance with other studies reporting OTU richness (Wirthner and others 2011; Zumsteg and others 2012; Meola and others 2014) using T-RFLP profiling, a method that detects the most abundant, and thus likely, the most relevant, taxa. We averaged the data over the three years of collections for our calculations. Microbial biomass carbon (MBC) was determined with the substrate-induced method (Anderson and Domsch 1978) every fall (September) between 2009 and 2013 by collecting three mineral soil samples (5 cm diameter × 10 cm mineral soil core, AMS Samplers, American Falls, ID, USA). The three samples were combined (90 samples for each sampling year), immediately put on ice, taken to the laboratory, passed through a 2-mm sieve and stored at 4°C. Again, we only used the 2013 data in this study.
Soil samples (5 cm diameter x 10 cm depth) to extract soil arthropods were collected in June, July, and August 2011 with a soil corer lined with a plastic sleeve to ensure an undisturbed sample (total of 270 samples). The plastic line core was immediately sealed on both ends using cling film and put into a cooler. All plots were sampled within three days and the extraction of arthropods started the evening of the sampling day using a high-gradient Tullgren funnel apparatus (Crossley and Blair 1991; Vandegehuchte and others 2015). Samples were kept in the extractor for four days and the soil arthropods were collected in 95% ethanol. All individuals were counted and each individual was identified morphologically to the lowest level feasible [76 taxa, including orders, suborders, subfamilies, families (Protura, Thysanoptera, Aphidina, Psylina, Coleoptera, Brachycera, Nematocera, Auchenorryncha, Heteroptera, Formicidae); sub-phylum for Myriapoda, for Acari and Collembola also including morpho-species). Note that we also included larval stages (nine of the 76 taxa) (Vandegehuchte and others 2015). All data were summed over the season. A detailed species list for mites and collembolans is published (Vandegehuchte and others 2017a) [https://doi.org/10.1371/journal.pone.0118679.s001]. Earthworms are rare in the SNP and therefore were not included. We collected eight random 2.2 cm diameter x 10 cm deep soil cores from each plot in September 2013 to determine the soil nematode community composition. The samples were mixed and the nematodes were extracted from 100 ml of fresh soil using Oostenbrink elutriators (Oostenbrink 1960). All nematodes in a 1 ml of the 10 ml extract were counted, a minimum of 150 individuals sample-1 were identified to genus or family level using (Bongers 1988), the numbers of all nematodes were extrapolated to the entire sample and expressed for a 100 g dry sample. In total we identified 63 genus or family levels (Vandegehuchte and others 2015). The list of all the nematodes found is published (Vandegehuchte and others 2015) [http://www.oikosjournal.org/appendix/oik-03341] or DOI: [doi: 10.1111/oik.03341].
We are aware that sampling soil microbes from 2009 to 2011 and soil arthropods in 2011 was not ideal, but we are positive that this does not bias the results. Most of the parameters measured in our experiment either already showed a treatment response after the first growing season (e.g., plant biomass) or did not respond over the entire time experiment (e.g., microbial biomass C). The microbial community composition (2009 – 2011) was highly influenced by inter-annual differences in temperature and precipitation, but did not differ between treatments or vegetation types (Hodel and others 2014). We therefore felt comfortable using the 2009 through 2011 data for describing the soil microbial community in our experimental treatments. Similarly, we are positive that our soil arthropod data are representative. We did assess soil arthropods in August 2012 and found no differences to the August 2011 data. However, we did not feel comfortable combining the 2011 June, July, August data with only August data for 2012 for our analyses.
Sampling of soil properties
We collected three soil samples (5 cm diameter x 10 cm depth) in each plot in September 2013 after removing the vegetation. First, we collected the top layer of mineral soil rich in organic matter, the surface organic layer or rhizosphere, typically 1 to 3 cm in depth with a soil corer (AMS Samples, American Falls, Idaho, USA). Second, we collected a 10 cm mineral soil core beneath this surface layer. The cores for each layer were composited, dried at 65 °C for 48 h and fine-ground to pass a 0.5 mm screen. We then analysed all samples for total C using a Leco TruSpec Analyser (Leco, St. Joseph, Michigan, USA). Mineral soil pH was measured potentiometrically in 1:2 soil:CaCl2 solution with an equilibration time of 30 min.
Soil net N mineralisation was assessed during the 2013 growing season (Risch and others 2015). For this purpose, we randomly collected a 5 cm diameter x10 cm deep soil sample with a soil corer (AMS Samples, American Falls, Idaho, USA) after clipping the vegetation in June 2013. After weighing and sieving (4 mm mesh) the soil, we extracted a 20 g subsample in 1 mol l-1 KCl for 1.5 h on an end-over-end shaker and thereafter filtered it through ashless folded filter paper (DF 5895 150, ALBET LabScience, Hahnenmühle FineArt GmbH, Dassel, Germany). From these filtrates NO3- concentrations were measured colorimetrically (Norman and Stucki 1981) and NH4+with flow injection analysis (FIAS 300, Perkin Elmer, Waltham Massachusetts, USA) (Risch and others 2015). We dried the rest of the sample 105 °C to constant mass to determine fine,fraction bulk density. A second soil sample was collected within each plot in June 2013 with a corer lined with a 5 x 13 cm aluminium cylinder. The corer was driven 11.5 cm deep into the soil so that the top 1.5 cm of the cylinder remained empty. Into this space we placed a polyester bag (250 µm) filled an ion-exchanger resin to capture the incoming N. The bag was filled with a 1:1 mixture of acidic and alkaline exchanger resin (ion-exchanger I KA/ion exchanger IIIAA, Merck AG, Darmstadt, Germany). We then removed 1.5 cm soil at the bottom of the cylinder and placed a second resin exchanger bag into this space to capture the N leached from the soil column. To assure that the exchange resin was saturated with H+ and Cl- prior to filling the bags, the mixture was stirred with 1.2 ml l-1 HCl for 1 h and then rinsed with demineralized water until the electrical conductivity of the water reached 5 µm cm-1. The cylinder with the resin bags in place was reinserted into the soil with the top flush to the soil surface and incubated for three months. We recollected the cylinders in September 2013. Each resin bag and 20 g of sieved soil (4 mm mesh) from each cylinder were then separately extracted with KCl and NO3- and NH4+ concentrations were measured. Nitrate and NH4+ concentrations of all samples were then converted to a content basis by multiplying their values with fine fraction bulk density. Net N mineralisation was thereafter calculated as the difference between the N content of the samples collected at the end of the three-month incubation (including the N extracted from the bottom resin bag) and the N content at the beginning of the incubation (Risch and others 2015).
Soil CO2 emissions were measured every two weeks between 0900 and 1700 hrs from early May through late September 2013 with a PP-Systems SRC-1 soil respiration chamber (15 cm high, 10 cm diameter; closed circuit) attached to a PP-Systems EGM-4 infrared gas analyser (PP-Systems, Amesbury, MA, USA) on two locations per plot (Risch and others 2013). The chamber was placed on randomly placed, permanently installed PVC collars (10 cm diameter) driven 5 cm into the soil at the beginning of the study (Risch and others 2013). Freshly germinated plants growing within the collars were removed prior to each measurement to avoid measuring plant respiration or photosynthesis. The two measurements collected per plot and sampling date were averaged.
Soil moisture (with time domain reflectometry; Field-Scout TDR-100, Spectrum Technologies, Plainfield, Illionois, USA) and temperature (with a waterproof digital pocket thermometer; Barnstead International, Dubuque, Iowa, USA) were measured at five random locations per plot every two weeks during the growing seasons during the experiment for the 0 to 10 cm depth (Risch and others 2013, 2015). As soil moisture and soil temperature were highly negatively correlated (Risch and others 2013), we only used soil moisture for this study. We used plot-level averages of all values available to capture soil moisture variability during the five years of the experiment. The results remained unchanged when we only used soil moisture from the 2013 growing season.
Numeral calculations and statistical analyses
Ecosystem coupling. We conducted principal component analyses (PCAs; unscaled) at the complete dataset level using the abundances of each taxonomical entity to describe each of the five different communities used in this study: aboveground-dwelling invertebrates, vascular plants, soil microorganisms, soil arthropods and soil nematodes. We retained the first two components (PCA axis 1 and PCA axis 2) of each analysis as we found them to adequately represent the temporal and spatial variability of our 90 treatment plots in previous studies55,67. Together they explained a total of 71.70% of the variation for aboveground invertebrates, 44.36% for plants, 44.85% for soil microorganisms, 61.85% for soil arthropods and 77.19% for soil nematodes. In addition, we used soil pH and soil organic C content as a proxy for soil chemical properties, soil bulk density as a proxy for soil physical properties and soil moisture (negatively correlated with soil temperature) as a proxy for soil micro-climatic conditions for an overall total of fourteen constituents.
We calculated ecosystem coupling9 for each exclosure treatment within each vegetation type (i.e., 2  5 treatment combinations in total) as an integrated measure of pairwise ecological interactions between ecosystem constituents representing ecological communities and the soil abiotic environment. These ecological interactions are defined by non-parametric Spearman rank correlation analyses between two constituents, excluding interactions involving two abiotic constituents (e.g., soil pH vs. soil moisture) and interactions between the first (PC1) and second (PC2) component of each community type, as these are orthogonal by definition. Interactions between abiotic constituents were excluded from the analyses because the focus of our study was on communities and how they interact with one another and their surrounding environment; therefore, including abiotic-abiotic interactions was not of interest here. Given that the effectiveness of our experimental design resulted in that no community composition data of aboveground-dwelling invertebrates was available for the “None” plots (all animals excluded), only thirteen instead of fourteen constituents were included in the ecosystem coupling calculations for this treatment. The complete absence of aboveground invertebrates represents the most extreme case of disturbance between aboveground animal communities and the rest of the ecosystem constituents. This may have resulted in a slight overestimation of ecosystem coupling for these plots.
	Average ecosystem coupling was calculated as follows:
Ecosystem coupling=
where Xi is the absolute Coupling was calculated value of the Spearman’s rho coefficient of the ith correlation for each treatment within each vegetation type (i.e., based on nine replicates each), considering and n is the number of pairwise comparisons considered (n = a total of 80; interactions (56 in the case of the “None” treatment). We considered a total of 40 biotic-biotic interactions (i.e., concerning two community-level principal components such as plants and microbes; 24 in the case of the “None” treatment) and 40 abiotic-biotic (i.e., concerning one community-level principal component and one abiotic factor, e.g., plant community and soil properties; 32 in the case of the “None” treatment).	Coupling was calculated for each treatment within each vegetation type (i.e., based on nine replicates each), considering a total of 80 interactions (56 in the case of the “None” treatment). We considered a total of 40 biotic-biotic interactions (i.e., concerning two community-level principal components such as plants and microbes; 24 in the case of the “None” treatment) and 40 abiotic-biotic (i.e., concerning one community-level principal component and one abiotic factor, e.g., plant community and soil properties; 32 in the case of the “None” treatment).
To establish whether constituents were significantly and positively coupled within treatments (i.e., the average of their correlation coefficients were greater than in a null model where correlation only happens by chance), we calculated one-tailed p-values based on permutation tests with 999 permutations.

We considered six ecosystem functions and process rates commonly used to assess ecosystem functioning (Meyer and others 2015; Manning and others 2018). Plant N content represents a measure of forage quality, while plant richness has been shown to stabilise biomass production, thus allowing the system to respond to changes in herbivory. Soil net N mineralisation, soil respiration, root biomass, and microbial biomass represent fluxes or stocks of energy. For all functions and processes higher values represent higher functioning (Manning and others 2018). All these variables were measured in the last year of the experiment (2013). We then quantified ecosystem multifunctionality using the multiple threshold approach (Byrnes and others 2014; Manning and others 2018), which considers the number of functions that are above a certain threshold, over a series of threshold values (typically 10-99%) that are defined based on the maximum value of each function. We weighted all our functions equally for these calculations (Manning and others 2018). The number of functions in a plot with values higher than a given threshold value for the respective function is summed up. The sum represents ecosystem multifunctionality for that plot. Given that choosing any particular threshold as a measure of ecosystem multifunctionality is arbitrary, we calculated the average of thresholds from 10-90% (in 10% intervals) as a more integrated representation of ecosystem multifunctionality.
We used Pearson correlations to explore the relationships between ecosystem coupling (all interactions, biotic-biotic interactions, abiotic-biotic interactions involving above- and belowground constituents, and all interactions, biotic-biotic interactions, abiotic-biotic interactions involving belowground constituents only) and ecosystem multifunctionality by calculating the slopes of all relationships between ecosystem coupling and multifunctionality for all thresholds between 10 and 99%. We also related ecosystem coupling with the average of multifunctionality at thresholds between 30-80% as explained before and considered this correlation as a robust indication of the type of association between these two variables. In addition, we explored the relationships between ecosystem coupling (all interactions, biotic-biotic interactions, abiotic-biotic interactions involving above- and belowground constituents, and all interactions, biotic-biotic interactions, abiotic-biotic interactions involving belowground constituents only) and individual ecosystem functions. The effects of exclosures and vegetation type on individual functions and multifunctionality were evaluated using linear mixed effects models ('lme' function of the nlme package), with exclosure and vegetation type as fixed effects and fence as a random factor. All statistical analyses and numerical calculations were done in R version 3.4.0 (R Core Team 2016).

#References

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- Blackwood CB, Marsh T, Kim S-H, Paul EA. 2003. Terminal Restriction Fragment Length Polymorphism Data Analysis for Quantitative Comparison of Microbial Communities. Appl Environ Microbiol 69:926–32. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC143601/
- Bongers T. 1988. De nematoden von Nederland. Schoorl, The Netherlands: Pirola
- Byrnes JEK, Gamfeldt L, Isbell F, Lefcheck JS, Griffin JN, Hector A, Cardinale BJ, Hooper DU, Dee LE, Duffy JE. 2014. Investigating the relationship between biodiversity and ecosystem multifunctionality: Challenges and solutions. Methods Ecol Evol 5:111–24.
- Crossley DAJ, Blair JM. 1991. A high-efficiency low-technology Tulgren-type extractor for soil microarthopods. Agric Ecosyst Environ 34:187–92.
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- Frank DA, McNaughton SJ. 1990. Aboveground biomass estimation with the canopy intercept method: A plant growth form caveat. Oikos 57:57–60.
- Haynes AG, Schütz M, Buchmann N, Page-Dumroese DS, Busse MD, Risch AC. 2014. Linkages between grazing history and herbivore exclusion on decomposition rates in mineral soils of subalpine grasslands. Plant Soil 374.
- Hodel M, Schütz M, Vandegehuchte ML, Frey B, Albrecht M, Busse MD, Risch AC. 2014. Does the aboveground herbivore assemblage influence soil bacterial community composition and richness in subalpine grasslands? Microb Ecol 68:584–95.
- Liu WT, Marsh TL, Cheng H, Forney LJ. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63:4516–22. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168770/
- Manning P, van der Plas F, Soliveres S, Allan E, Maestre FT, Mace G, Whittingham MJ, Fischer M. 2018. Redefining ecosystem multifunctionality. Nat Ecol Evol 2:427–36. https://doi.org/10.1038/s41559-017-0461-7
- Meola M, Lazzaro A, Zeyer J. 2014. Diversity, resistance and resilience of the bacterial communities at two alpine glacier forefields after a reciprocal soil transplantation. Environ Microbiol 16:1918–34. https://onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.12435
- Meyer ST, Koch C, Weisser WW. 2015. Towards a standardized Rapid Ecosystem Function Assessment (REFA). Trends Ecol Evol 30:390–7. http://www.sciencedirect.com/science/article/pii/S0169534715000968
- Norman R., Stucki JW. 1981. The determination of nitrate and nitrite in soil extracts by ultraviolet spectrophotometry. Soil Sci Soc Am J 45:347–53.
- Ochoa-Hueso R. 2016. Non-linear disruption of ecological interactions in response to nitrogen deposition. Ecology 87:2802–2814.
- Oostenbrink M. 1960. Estimating nematode populations by some selected methods. In: Sasser NJ, Jenkins WR, editors. Nematology. Chapel Hill, NC, USA: University of North Carolina Press. pp 85–101.
- R Core Team. 2016. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing
- Risch AC, Haynes AG, Busse MD, Filli F, Schütz M. 2013. The response of soil CO2 fluxes to progressively excluding vertebrate and invertebrate herbivores depends on ecosystem type. Ecosystems 16:1192–202.
- Risch AC, Schütz M, Vandegehuchte ML, Van Der Putten WH, Duyts H, Raschein U, Gwiazdowicz DJ, Busse MD, Page-Dumroese DS, Zimmermann S. 2015. Aboveground vertebrate and invertebrate herbivore impact on net N mineralization in subalpine grasslands. Ecology 96:3312–22.
- Schütz M, Risch AC, Achermann G, Thiel-Egenter C, Page-Dumroese DS, Jurgensen MF, Edwards PJ. 2006. Phosphorus translocation by red deer on a subalpine grassland in the Central European Alps. Ecosystems 9:624–633.
- Schütz M, Risch AC, Leuzinger E, Krüsi BO, Achermann G. 2003. Impact of herbivory by red deer (Cervus elaphus L.) on patterns and processes in subalpine grasslands in the Swiss National Park. For Ecol Manage 181:177–88.
- Vandegehuchte ML, van der Putten WH, Duyts H, Schütz M, Risch AC. 2017a. Aboveground mammal and invertebrate exclusions cause consistent changes in soil food webs of two subalpine grassland types, but mechanisms are system-speciﬁc. Oikos 126:212–23.
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- Vandegehuchte ML, Schütz M, de Schaetzen F, Risch AC. 2017b. Mammal-induced trophic cascades in invertebrate food webs are modulated by grazing intensity in subalpine grassland. J Anim Ecol 86:1434–46.
- Vandegehuchte ML, Trivellone V, Schütz M, Firn J, de Schaetzen F, Risch AC. 2018. Mammalian herbivores affect leafhoppers associated with specific plant functional types at different timescales. Funct Ecol 32:545–55.
- Wirthner S, Frey B, Busse MD, Schütz M, Risch AC. 2011. Effects of wild boar (Sus scrofa L.) rooting on the bacterial community structure in mixed-hardwood forest soils in Switzerland. Eur J Soil Biol 47:296–302. http://dx.doi.org/10.1016/j.ejsobi.2011.07.003
- Zumsteg A, Luster J, Göransson H, Smittenberg RH, Brunner I, Bernasconi SM, Zeyer J, Frey B. 2012. Bacterial, Archaeal and Fungal Succession in the Forefield of a Receding Glacier. Microb Ecol 63:552–64. https://doi.org/10.1007/s00248-011-9991-8

ecosystem-coupling

display_name: ecosystem-coupling

ecosystem-functions

display_name: ecosystem-functions

ecosystem-multifunctionality

display_name: ecosystem-multifunctionality

exclusion

display_name: exclusion

grassland

display_name: grassland

grazing

display_name: grazing

invertebrates

display_name: invertebrates

subalpine

display_name: subalpine

swiss-national-park

display_name: swiss-national-park

vertebrates

display_name: vertebrates

en: Ecosystem coupling and multifunctionality - exclosure experiment


en: wind-speed precipitation meteorology climate-change temperature par relative-humidity meteo swiss-forest-lab long-term

en: Data plot of the field station (LAF)

media_type: application/pdf

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

format: PDF

mimetype: application/pdf

en: Field station data (LAF)

media_type: text/csv

en: Data file.

format: CSV

mimetype: text/csv

en: Data plot of the forest station (LAB)

en: Site photo of the field station (LAF)

en: Site photo of the field station from the side.

format: SERVICE

mimetype: image/jpeg

en: Site aerial photo (Lausanne)

en: Site aerial photo from both Lausanne stations. Source: Google. 2016. Site aerial photo from both Lausanne stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Forest station data (LAB)

en: Site photo of the forest station (LAB)

en: Site photo of the fforest station from the side.

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Lausanne in Switzerland where one station is located within a natural mixed forest stand (LAB) with European beech (_Fagus sylvatica_; 160-170 yrs), European silver fir (_Abies alba_; 160-170 yrs) and Norway spruce (_Picea abies_; 160-170 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, LAF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Lausanne is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Lausanne, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1996 onwards


en: national-dishes food-taste-similarity food-preferences agro-food-trade latent-semantic-analysis

en: dyadic food similarity measures, pairwise similarity and dissimilarity (chord diagram)

en:
The figures show the distribution of two dyadic food tastes similarity measures on the base of
the national dishes: (i) the Manhattan distance and the (ii) latent semantic analysis. The chord diagram
shows the results for country pairs with most and less similarity on basis of the LSA-approach.

en: National dishes, migration data and data for bilateral food trade flows

en:
The data include information on national dishes, migration data and data for bilateral food
trade flows for 5 years as well as importer and exporter GDP, population, distance between
most populated cities, bilateral information on Preferential Trade Agreements, common
official primary langauge, common colonizer post-1945, colonial relationship for overall
171 countries. The final data set contains 145,350 observations (29,070 country pairs for
5 years)

en: information on ingredients of national dishes

en: shows information of ingredients of all national dishes of 171 countries and their names

en: The data described in this article were collected daily over the period 4 June 2018 to 23 August 2018 and contains information of several data sources. The database includes information on national recipes and their ingredients for 171 countries, measures for food taste similarities between all 171 countries as well as bilateral migration and agro-food trade data for 5 years. The database can be used for analyzing e.g., the relation between food preferences and international trade or food preferences and health outcomes (e.g., obesity) across countries.

agro-food-trade

display_name: agro-food-trade

food-preferences

display_name: food-preferences

food-taste-similarity

display_name: food-taste-similarity

latent-semantic-analysis

display_name: latent-semantic-analysis

national-dishes

display_name: national-dishes

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data of national dishes, their similarity and trade flows


en: ice chemistry laboratory-study atmosphere snow-atmosphere-interactions

en: Processed data as shown in Figure 4 of publication. X-ray energy in eV in column one, electron count intensity in arb. units in column 2.

en: Near Ambient Pressure partial Auger-Meitner electron yield X-ray absorption spectra and photon flux data. X-ray energy in eV in column 1, analyzer electron count intensity in arb. units in column 2.

en:
The table lists all NEXAFS raw data with the following columns:

* name:						raw file name
* xRayEkinRange_eV: 		Smallest and largest X-ray photon energy in eV
* scientaPassEnergy_eV: 	Pass energy of electron analyzer in eV
* scientaDwellTime_ms: 		Dwell time of electron analyzer in ms
* regionName:				O K-edge for all data
* scientaAcquisitionMode: 	Fixed energy (snapshot) mode
* scientaEkinRange_eV: 		Smallest and largest energy of the kinetic energy window used for detection in this work
* scientaEkinStep_eV		Not defined in fixed energy mode
* scientaLensMode:			Tune table
* scientaRegionIterations: 	Iterations (sweeps)
* scientaSequenceIterations: Iterations (sweeps)
* sampleTemp_dC: 			Temperature as monitored at the sample holder in °C
* cellPressure_mbar: 		Total pressure in measurement cell in mbar
* iceTemp_dC: 				Temperature of ice sample calculated based on vapour pressure (assuming total pressure equals partial pressure of water) in °C
* smplX_mm: 				positon of measurement spot, x dimension in mm
* smplY_mm: 				positon of measurement spot, y dimension in mm
* smplZ_mm: 				positon of measurement spot, z dimension in mm
* sealingTemp:				temperature at base of sample manipulator
* lastModifiedDatestr: 		time and date when data aquisition was finished
* sample: 					sample description

en: Data are compiled that have been used to demonstrate the impact of high water partial pressure on X-ray absorption spectra of ice.

atmosphere

display_name: atmosphere

chemistry

display_name: chemistry

ice

display_name: ice

laboratory-study

display_name: laboratory-study

snow-atmosphere-interactions

display_name: snow-atmosphere-interactions

en: An ice oxygen K-edge NEXAFS spectroscopy data set on gas-phase processing


maintainer: Felix Gugerli

en: monitoring genetic-diversity melanargia-galathea genetic-structure conservation-genetics

en:
Individual genotypes assessed at six nuclear microsatellite loci (two alleles per locus) for individuals of the butterfly Melanargia galathea (Marbled white) that were collected throughout Switzerland, along the regular grid of the Biodiversity Monitoring (BDM) of Switzerland. For each individual, the sampling site (number) and the genotype are given. Note that due to privacy restrictions, the original geographic coordinates remain disclosed. For original coordinates, data holders should be contacted (Swiss Federal Office for the Environment; Biodiversity Monitoring Switzerland).
The data refer to the following publication: Terzer et al., Distinct spatial patterns of genetic structure and diversity in the butterfly Marbled White (Melanargia galathea) inhabiting fragmented grasslands. Conservation Genetics, https://doi.org/0.1007/s10592-023-01593-4.

conservation-genetics

display_name: conservation-genetics

genetic-diversity

display_name: genetic-diversity

genetic-structure

display_name: genetic-structure

melanargia-galathea

display_name: melanargia-galathea

monitoring

display_name: monitoring

en: Nuclear microsatellite genotypes of the butterfly Melanargia galathea


maintainer: Thorsten Bartels-Rausch

en: metamorphism snow antarctica solution chemistry brine ozone laboratory-study interface alpine reaction arctic heterogeneous

en: Matlab Data

en: All data as Matlab mat file

en: Readme file

en: This file shows data, code, and plots.

en: Matlab Script to view and plot data

en: Earth’s snow cover is very dynamic on diurnal time scales. The changes to the snow structure during this metamorphism have wide ranging impacts such as on avalanche formation and on the capacity of surface snow to exchange trace gases with the atmosphere. Here, we investigate the influence of dry metamorphism, which involves fluxes of water vapor, on the chemical reactivity of bromide in the snow. For this, the heterogeneous reactive loss of ozone at a concentration of 5-6E12 molecules cm-3 is investigated in artificial, shock-frozen snow samples doped with 6.2 uM sodium bromide and with varying metamorphism history. The oxidation of bromide in snow is one reaction initiating polar bromine releases and ozone depletions.

alpine

display_name: alpine

antarctica

display_name: antarctica

arctic

display_name: arctic

brine

display_name: brine

heterogeneous

display_name: heterogeneous

interface

display_name: interface

metamorphism

display_name: metamorphism

ozone

display_name: ozone

reaction

display_name: reaction

snow

display_name: snow

solution

display_name: solution

en: Data set on bromide oxidation by ozone in snow during metamorphism from laboratory study


en: geospatial jupyter buffer roads gis density

en: Road Density Calculation (Python Notebook) online

en: Road data from OSM for the surroundings of Menzberg, Switzerland

mimetype: application/zip

en: Plots

en: Random plot locations

en:
This dataset contains the road and plot data used for the geospatial analysis example showcased in "Fostering Open Science at WSL with the EnviDat Environmental Data Portal", a contribution to the 5th Open Source Geospatial Research and Education Symposium (OGRS), 2018.
The example uses Jupyter Notebook to calculate road densities in the neighbourhood of sample plot locations with Python. Road data were extracted from OpenStreetMap, while the point data (sample plots) were generated manually.

buffer

display_name: buffer

density

display_name: density

geospatial

display_name: geospatial

gis

display_name: gis

jupyter

display_name: jupyter

roads

display_name: roads

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Dataset for OGRS 2018 publication


en: traits reef-fish ecology dispersal biodiversity

en: Simulated rates of speciation and extinction under a range of dispersal parameters. Net diversification rates are calculated from the difference between speciation and extinction rates. This data allows the creation of Figure A4 in Supporting information, Appendix 1.

en: Tropical reef fish trait data

en:
Species trait (i.e. adult body size, home range mobility behaviour, circadian activity and schooling) data gathered from the General Approach to Species Abundance Relationships (GASPAR) database (Kulbicki et al. 2013, Parravicini et al. 2013).

Kulbicki, M. et al. 2013. Global biogeography of reef shes: a hier- archical quantitative delineation of regions. – PLoS One 8: e81847.

Parravicini, V. et al. 2013. Global patterns and predictors of tropi- cal reef sh species richness. – Ecography 36: 1254–1262.

To complement the trait data with Pelagic Larval Duration information refer to the following publication:

Luiz, Osmar J., et al. "Adult and larval traits as determinants of geographic range size among tropical reef fishes." Proceedings of the National Academy of Sciences 110.41 (2013): 16498-16502.

In Donati et al. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography in August 2019, we used the PLD gathered from Luiz et al. 2013 as described in the methods - section "Species trait data".

en: Supplementary material Appendix 1 Figures illustrated in Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages". accepted in Ecography, August 2019

en: Global simulated distribution of species under a range of dispersal parameter values

media_type: text/plain

en:
Global distribution of simulated species richness under a range of dispersal parameter values d
d ∈ [1.75°: 5.45°].

format: TXT

mimetype: text/plain

en: Input for the Global distribution maps for proportions of species richness for (a) simulated dispersal parameter value (b) observed dispersal-related traits

en: Geographic distribution data (species richness and proportions of high/low dispersal-related traits) on predominantly low dispersing and high dispersing species expected based on the simulations, and those where low- and high- dispersal related traits values are observed for the five investigated traits.

en: Global coast files from https://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html used in the Figures

en: Dispersal parameter value d per simulation starting with a minimum dispersal value, where each species is able to colonise each adjacent cell, and ending with the value of d for which all the extant habitats, including the most remote Pacific islands, have been colonised (d ∈ [1.75°: 5.45°]).

en: Coral reef grid cells (shape, dbf, etc. files)

en:
Grid cells of 5 × 5°, corresponding to circa 555 × 555 km at the Equator (see Parravicini et al. 2013, Leprieur et al. 2016)

Parravicini, V. et al. 2013. Global patterns and predictors of tropi- cal reef sh species richness. – Ecography 36: 1254–1262.

Leprieur, F. et al. 2016. Plate tectonics drive tropical reef biodiver- sity dynamics. – Nat. Commun. 7: 11461.

en: Global species distribution of tropical reef fish species

en: Each species corresponds to a "Gaspar_code" gathered from the General Approach to Species Abundance Relationships (GASPAR) database (Kulbicki et al. 2013, Parravicini et al. 2013) and is linked to a specific Fishned ID corresponding to a specific Latitude and Longitude.

en: Input for spatial congruence test overlap between proportions of low and high dispersal and observed low- and high- dispersal-related traits in assemblages (30-50% threshold). see Table 2.

en: Main text figures

en: R Script used for figures in main text in: Donati et al. 2019: "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019.

en: Donati et al. main script

en:
Main script used in : Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages"
accepted in Ecography, August 2019

en: Functions used in R scripts in: Donati et al. 2019 "A process-based-model supports an association between  # dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019

en: Functions for Figures illustrated in Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019.

en:
This dataset contains all data and R codes (R Development Core Team, https://www.R-project.org) used in the following publication: Donati GFA, Parravicini V, Leprieur F, Hagen O, Gaboriau T, Heine C, Kulbicki M, Rolland J, Salamin N, Albouy C, Pellissier L. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted by Ecography in August 2019. When using this data and R scripts the above publication should be cited.

The interaction of habitat dynamics with species dispersal abilities could generate gradients
in species diversity and prevalence of life-history and ecological traits, when the latter are associated with dispersal potential. In this dataset, we use a spatial mechanistic model of speciation, extinction and dispersal, constrained by a dispersal parameter. This model allows to simulate the interplay between reef habitat dynamics over the past 140 million years and dispersal, shaping lineage diversification history and global assemblage composition of over 6000 tropical reef fish species. Global trait distribution data of tropical reef fish are used to evaluate the congruence between simulations and observations.

biodiversity

display_name: biodiversity

dispersal

display_name: dispersal

ecology

display_name: ecology

reef-fish

display_name: reef-fish

traits

display_name: traits

en: Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide


c-n-p-release-treeline

maintainer: Frank Hagedorn

title_for_slug: c-n-p-release-treeline

en: litter-decomposition nutrient-fluxes enzymatic-activities biogeochemical-cycling carbon-cycle microbial-biomass treeline-ecosystems climate-change

en: Litter layer characteristics, C-N-P-release during decomposition, microbial C-N-P, enzyme activity, mineralization of 13C-labeled glucose-6-phosphate from samples collected across two treelines

en:
1. Chemical characteristics of litter layer sampled along elevation gradient across treeline ecotones in the Khibiny mountains (birch) and South Urals (spruce)
2. Release of C-N-P during decomposition at 5°C and 15° studied in an incubation experiment with microlysimeters
3. Data on microbial biomass C-N-P, potential activity of C-N-P requiring enzymes in the litter layer
4. Mineralization of 13C labeled glucose-6 phosphate, microbial 13C uptake, and net P immobilization of released P to identify microbial processing of labile organic P

biogeochemical-cycling

display_name: biogeochemical-cycling

carbon-cycle

display_name: carbon-cycle

climate-change

display_name: climate-change

enzymatic-activities

display_name: enzymatic-activities

litter-decomposition

display_name: litter-decomposition

microbial-biomass

display_name: microbial-biomass

nutrient-fluxes

display_name: nutrient-fluxes

treeline-ecosystems

display_name: treeline-ecosystems

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: C-N-P-Release Treeline


maintainer: Benjamin Reuter

en: snow snow-cover-modeling avalanche-problem-type weissfluhjoch crocus avalanche-activity snow-instability snowpack avalanche avalanche-danger

en: 2015-2016 Seismic avalanche acitivity catalogue

en:
Avalanches were indentified in seismic data recorded by two seismic arrays, one deployed at Wannengrat (2,500 m) and another one deployed in the Dischma valley (2,000 m).
The data cover the period from 01.01.2016 - 30.04.2016 and are presented in Figure 7 in Reuter et al. (2021).

en: 2015-2016 Avalanche problem types from Crocus

en:
Avalanche problem types were derived from a snow cover simulation with the model Crocus for the winter season 2015-2016 at the Weissfluhjoch study plot, Davos, CH.
The data cover the period 01.01.2016-30.04.2016. The binary indicator (0,1) tells whether an avalanche problem type was identified in the snow cover simulation (1) or not (0).
The data are presented in Figure 7 in Reuter et al. (2021).

en: 1999-2017 Avalanche problem types from SNOWPACK

en:
Avalanche problem types were derived from snow cover simulations with the model SNOWPACK at the Weissfluhjoch study plot, Davos, CH.
The data cover the winter seasons between 1999-2017 and include the simulated annual frequencies of new snow, wind slab, persistent weak layer, aging-persistent weak layer and wet snow problem types.
The data are shown in Figure 8 in Reuter et al. (2021).

en: 1999-2017 Avalanche problem types from Crocus

en:
Avalanche problem types were derived from snow cover simulations with the model Crocus at the Weissfluhjoch study plot, Davos, CH.
The data cover the winter seasons between 1999-2017 and include the simulated annual frequencies of new snow, wind slab, persistent weak layer, aging-persistent weak layer and wet snow problem types.
The data are presented in Figure 8 in Reuter et al. (2021).

en: 2015-2016 Avalanche problem types from SNOWPACK

en:
Avalanche problem types were derived from a snow cover simulation with the model SNOWAPCK for the winter season 2015-2016 at the Weissfluhjoch study plot, Davos, CH.
The data cover the period 01.01.2016-30.04.2016. The binary indicator (0,1) tells whether an avalanche problem type was identified in the snow cover simulation (1) or not (0).
The data are presented in Figure 7 in Reuter et al. (2021).

en:
Avalanche problem types were derived from snow cover simulations with the models Crocus and SNOWPACK at the Weissfluhjoch study plot, Davos, CH. The data include annual frequencies of avalanche problem types for the seasons 1999-2017 and daily presence of avalanche problem types for the period 01.01.2016 - 30.04.2016.
Avalanche activity was derived from two seismic sensor arrays deployed no further than 15 km from Weissfluhjoch, Davos, CH. The data cover the period 01.01.2016 - 30.04.2016.

avalanche

display_name: avalanche

avalanche-activity

display_name: avalanche-activity

avalanche-danger

display_name: avalanche-danger

avalanche-problem-type

display_name: avalanche-problem-type

crocus

display_name: crocus

snow

display_name: snow

snow-cover-modeling

display_name: snow-cover-modeling

snow-instability

display_name: snow-instability

snowpack

display_name: snowpack

weissfluhjoch

display_name: weissfluhjoch

en: Simulated avalanche problem types and seismic avalanche activity around Weissfluhjoch


en: snow wind-drifted-snow low-cost avalanche monitoring lidar

en:
We developed a monitoring system using low-cost lidar (Livox Avia) and optical sensors, to measure snow depth variations in an avalanche release area at a high spatiotemporal scale (centimeter to low decimeter spatial resolution and hourly temporal resolution). A detailed description of the setup and a first data analysis is published in:
[Ruttner-Jansen, P., Voordendag, A., Hartmann, T., Glaus, J., Wieser, A., & Bühler, Y. (2024). Monitoring snow depth variations in an avalanche release area using low cost lidar and optical sensors. EGUsphere, 2024, 1-20.](https://nhess.copernicus.org/articles/25/1315/2025/)
This dataset contains hourly 3D lidar data of the snow surface at the test site Braemabuel in Davos, Switzerland from the winter season 2023-2024 (23.11.2023 - 14.04.2024). Braema1 is installed at 2191 m a.s.l. in the slope, looking up into the avalache release area, and Braema2 is installed at 2255 m a.s.l at the ridge, looking down. Both scans together cover an area of about 15000 m².
The data is in format ".las" and contains the points in XYZ [m], in the scanner own coordinate system
- scalar fields: intensity, return number, timestamp, tag, label
-- tag: binary code from Livox (see [Livox Avia Manual](https://terra-1-g.djicdn.com/65c028cd298f4669a7f0e40e50ba1131/Download/Avia/Livox%20Avia%20User%20Manual%20202204.pdf))
-- label: marking outliers (filtered by distance and SOR to get snow particles in the air)

lidar

display_name: lidar

low-cost

display_name: low-cost

monitoring

display_name: monitoring

wind-drifted-snow

display_name: wind-drifted-snow

educ

en: Education, culture and sport

en: Snow depth mapping by lidar station Braemabuel


maintainer: Izabela Bujak-Ozga

en: catchment oxygen-isotopes groundwater stream-water hydrogen-isotopes solutes catchment-data

en: This document provides a detailed description of the hydrochemical dataset, including, among other things, an overview of the dataset content, an explanation of the column headers, a description of the locations where samples were collected, and an explanation of the abbreviations used in the dataset.

en: This dataset includes mean concentrations of solutes (Calcium, Iron, Magnesium, Sodium, Potassium, Boron, Nitrate, Sulfate, and Chloride) and stable isotope values (hydrogen and oxygen) in water molecules. These were measured in precipitation, groundwater, soil water, and surface water samples collected from the Haute-Mentue catchment in Switzerland during Spring and Fall 2022. Detailed information is available in the accompanying documentation (documentation_for_the_hydrochemical_data_collected_during_spring_fall_2022_in_the_haute-mentue_catchment.pdf).

en: The dataset contains hydrochemical data collected from spring to fall 2022 in the Haute-Mentue catchment, Switzerland. This hydrochemical data includes solute concentrations and stable isotopes of oxygen and hydrogen in water molecules, measured in streamwater, soil water, groundwater, and rainfall samples. Samples were collected during eight rainfall events with higher temporal resolution (hourly) as well as at lower resolution between events. A detailed description of the dataset is provided in the documentation.

catchment

display_name: catchment

catchment-data

display_name: catchment-data

groundwater

display_name: groundwater

hydrogen-isotopes

display_name: hydrogen-isotopes

oxygen-isotopes

display_name: oxygen-isotopes

solutes

display_name: solutes

stream-water

display_name: stream-water

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Hydrochemical Data Collected during Spring-Fall 2022 in the Haute-Mentue Catchment


maintainer: Matthias Bürgi

en: agriculture land-change scenarios land-use-modelling pathways

en: This dataset contains the spatial layers showing future land change pathways in Europe between 2015 and 2050, as simulated by the CLUMondo model according to the Agricultural Futures Framework (AFF) scenarios.

en:
This dataset contains the spatial layers showing future land change pathways in Europe between 2015 and 2050, as simulated by the CLUMondo model and according to the Agricultural Futures Framework (AFF) scenarios.

Three scenarios are included:
- Land for Food and Land for Nature (LFLN)
- Land as Culture (LaC)
- Land for Society (LfS)

agriculture

display_name: agriculture

land-change

display_name: land-change

land-use-modelling

display_name: land-use-modelling

pathways

display_name: pathways

scenarios

display_name: scenarios

en: AFF agricultural land change scenarios in Europe 2015-2050


maintainer: Merin Reji Chacko

en: vascular-plants metaweb switzerland food-webs vertebrates trophic-networks invertebarates

en: trophich 0.1

en: Deprecated version from before the first round of review at Scientific Data

en: trophiCH 1.0

en: Most current version of the dataset, after revision round 1 at Scientific Data.

en:
Environmental pressures on species can cascade within food webs and even extend beyond individual ecosystems to interconnected systems at large spatial scales. To facilitate the exploration of these dynamics, we constructed trophiCH: a data-based national trophic meta-food web (henceforth the metaweb), that includes vertebrates, invertebrates, and vascular plants within Switzerland's national boundaries, and drawing from literature published between 1862 and 2024. Our comprehensive dataset catalogues 1,112,073 trophic interactions involving 23,151 species and 125 feeding guilds (e.g., detritivores, fungivores, etc). Interactions were primarily documented at the species level from the literature. Additional species-level interactions were inferred by resolving coarser taxonomic records (e.g., using “species A feeds on genus B” to infer interactions between species A and species within genus B) using taxonomic and habitat co-occurrence information.
We provide seven datasets: 1) the metaweb, 2) the taxa checklist, 3) the data source meta-dataset, 4) the list of generalist basal and predator families and polylectic species with citations and 5) a dataset with citations for the inferences of missing predators, 6) a dataset with citations for the parallel inference of diets from similar species and 7) a list of other existing metawebs. The empirical dataset is 00_empirical_metaweb.csv. To reproduce the final metaweb (01_final_metaweb.csv), start the R Project file: trophich.Rproj. We provide five scripts, accompanying functions, and the raw data required to run these scripts to reproduce the taxonomic expansion and validation of the datasets. In the first script (01_inferring_interactions.R), we infer interactions using genus and family level interactions and for basal feeding groups (see Methods: Taxonomic expansion). In the second script (02_inferring_interactions_special_cases.R), we infer further interactions for a few special cases with detailed explanations. In the third script (03_metaweb_comparisons.Rmd), we provide the statistical comparisons between our metaweb and other empirical metawebs as an R Markdown document. We additionally provide a a Python Jupyter Notebook document, outlining the error validation of the data extraction process (04_error_validation.ipynb and an accompanying .html file). Finally, we provide a script to reproduce figure 1 from the associated data paper (05_metaweb_summary_figure_1.R).
This is a first step towards a comprehensive food web for Switzerland, but data gaps remain (see Reji Chacko et al 2024, Fig.1C). We encourage addition of new datasets to this metaweb and welcome any collaborations to contruibute to future versions of this dataset. Please contact: merin.rejichacko@gmail.com.

food-webs

display_name: food-webs

invertebarates

display_name: invertebarates

metaweb

display_name: metaweb

switzerland

display_name: switzerland

trophic-networks

display_name: trophic-networks

vascular-plants

display_name: vascular-plants

vertebrates

display_name: vertebrates

en: trophiCH v1 - a food web for Switzerland


en: precipitation potential-evapotranspiration extreme-events multi-year-drought drought chelsa megadrought

en: Kernel Normalized Difference Vegetation Index Anomaly (QKNDVI)

en: Global annual layers of the the kernel normalized difference vegetation index anomaly (qkndvi) at a 1/12° (~10km) spatial resolution.

en: Multiyear meteorological droughts (MYMD10) statistics - Description

en: Description of column names, and units of the fields contained in the dataset "Multiyear meteorological droughts (MYMD10) statistics".

en:
Multiyear meteorological droughts (MYMD10) statistics
Statistics of the multiyear meteorological droughts, containing the ID, duration, area, and empirical ranking of the droughts, and the anomalies in kNDVI

en: Global annual layers of the multiyear meteorological droughts (MYMD) at a 1/24° (~5km) spatial resolution

en: Statistics of the multiyear meteorological droughts, containing the ID, duration, area, and empirical ranking of the droughts.

en: Standardised Precipitation Evapotranspiration Index (SPEI)

en: Global monthly layers of the Standardized Precipitation Evapotranspiration Index (SPEI) a 30 arcsec (~1km) spatial resolution

en: Standardized Precipitation Index (SPI)

en: Global monthly layers of the Standardized Precipitation Index (SPI) a 30 arcsec (~1km) spatial resolution

en: Technical documentation document including the variable names, units, scaling, offset, and background.

en: Global annual layers of the multiyear meteorological droughts (MYMD) at a 1/12° (~10km) spatial resolution

en: Multiyear meteorological droughts (MYMD) statistics - Description

en: Description of column names, and units of the fields contained in the dataset "Multiyear meteorological droughts (MYMD) statistics".

en:
The dataset consists of the standardized precipitation (SPI) and the standardized precipitation evapotranspiration index (SPEI) index with a 30 arcsec (~1km) horizontal resolution.
Data for precipitation rates (pr) and potential evapotranspiration (pet) are taken from CHELSA V2.1 (https://doi.org/10.16904/envidat.228.v2.1). Both data sets are monthly time series from 1980 to 2018 at 30 arcsec. and have the unit of kg m-2 month-1. SPEI is a more reliable measure of drought than SPI as it additionally considers the effect of potential evapotranspiration. Potential evapotranspiration (pet) is the amount of water per area per time that can evaporate at the soil surface or be transpired by plants in absence of water supply limitations. SPEI effectively estimates for a given location how the climatic water balance, i.e., the difference between precipitation rate (pr) and potential evapotranspiration (pet), relates to the long-term mean. Here, pet was calculated with the Penman-Montheith approach, assuming surface conductance of a reference crop of 12 cm height following the definition of the Food and Agriculture Organization of the United Nations (FAO), originating from CHELSA-BIOCLIM+ database (https://www.doi.org/10.16904/envidat.332). To obtain global time series of SPEI, in each pixel the frequency distribution of water balance estimates (pr-pet) is approximated with a log-logistic probability distribution function. We calculate monthly SPEI using a 12-month memory and approximate the parameters of the log-logistic probability distribution based on the time series from 1980-2018. Such a 12-month time window is suitable to capture long-term drought events that are long enough to impose substantial impacts on agriculture, hydrology, and ecosystems while ones at shorter time scales would be more appropriate to detect short-term drought. For each month, SPEI is calculated considering the respective water-balance value and the values of the eleven preceding months. Here we use SPEI-12 in December to represent the overall water-balance condition of the respective year. The resulting SPEI data has a horizontal resolution of 130 arcsec (~1km). The calculation of SPI and SPEI is done in R with the package SPEI (https://www.doi.org/10.32614/CRAN.package.SPEI).

chelsa

display_name: chelsa

drought

display_name: drought

extreme-events

display_name: extreme-events

megadrought

display_name: megadrought

multi-year-drought

display_name: multi-year-drought

potential-evapotranspiration

display_name: potential-evapotranspiration

precipitation

display_name: precipitation

educ

en: Education, culture and sport

en: High resolution global standardized drought indices


maintainer: Stephanie Mayer

en: snow-profiles rutschblock snowpack-simulation snowpack failure-layer snow-instability snow-stratigraphy

en: SWISS data set: Properties of observed snow profiles and simulated failure layers

en: For each profile pair from the SWISS data set, this file contains one row with information on the observed snow stability and all extracted features describing the simulated failure layers. Please note that only those profile pairs which fulfilled the similarity criteria (column similarity_obs_sim = 1, 121 profiles) were used to validate the RF model. The content of the columns is explained in Table 1 of the ReadMe file.

en: DAV data set: Properties of observed snow profiles and simulated failure layers

en:
For each profile pair from the DAV data set, this file contains one row with information on the observed snow stability and all extracted features describing the simulated failure layers. The content of the columns is explained in Table 1 of the ReadMe file. Only those profile pairs which fulfilled predefined similarity criteria (column
"similarity_obs_sim" = 1) and which belonged to the stability classes "stable" and "unstable" (column "stability_class"
= 0 or 1) were used to train the RF model. Please note that for each of the two snow profiles with RB score 7 (profile
IDs 7228 and 9526), three additional layers were included in this data set to obtain a balanced set of training data (73
unstable and 73 stable profiles).

en: Simulated snow profiles

en: Simulated snow stratigraphy in form of one *.csv-file per snow profile from the DAV and SWISS data sets (in respective subfolders). Each file is named after the profile ID which allows identifying the corresponding observed profile in the "observed_profiles" folder. One row corresponds to one simulated snow layer. The content of the columns 1-7 is described in Table 3 of the ReadMe file. The remaining columns (8-31) contain all features that were used in the development of the RF model and are described in Table 1 of the ReadMe file.

en: Observed snow profiles

en: Observed snow stratigraphy in form of one *.csv-file per snow profile from the DAV and SWISS data sets (in respective subfolders). Each file is named after the profile ID which allows identifying the corresponding simulated profile in the "simulated_profiles" folder. One row corresponds to one observed snow layer. The content of the columns is described in Table 2 of the ReadMe file.

en: ReadMe

en: ReadMe file explaining data structure and content

en:
This data set includes information on all observed and simulated snow profiles that were used to train and validate the
random forest model described in Mayer et al. (2022). The RF model was trained to assess snow instability from simulated snow stratigraphy. The data set contains observed snow profiles from the region of Davos (DAV subset, 512 profiles) and from all over Switzerland (SWISS subset, 230 profiles). For each observed snow profile, there is a corresponding simulated profile which was obtained using meteorological input data for the numerical snow cover model SNOWPACK. The information on the observed snow profile contains a Rutschblock test result including the depth of the failure interface. As part of the study described in Mayer et al. (2022), each observed snow profile was manually compared to its simulated counterpart and the simulated layer corresponding to the Rutschblock failure layer was identified.

The data are provided in the following form: one file each per observed and simulated snow profile (2x512 files DAV, 2x230 files SWISS), two files (1 file DAV, 1 file SWISS) containing the observed information on snow instability, the allocation between observed and simulated failure layer, and all features extracted from the simulated weak layers that were used to develop the RF model.

failure-layer

display_name: failure-layer

rutschblock

display_name: rutschblock

snow-instability

display_name: snow-instability

snow-profiles

display_name: snow-profiles

snow-stratigraphy

display_name: snow-stratigraphy

snowpack

display_name: snowpack

snowpack-simulation

display_name: snowpack-simulation

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Observed and simulated snow profile data


en: snow meteodat-gmbh wagital gcos snow-water-equivalent

en:
Total water reserves of the snow cover [mio m3] for Wägital catchment, Switzerland, for reference date April 1. Data is separated in 2 elevation zones 900m-1500m asl and 1500m-2300m asl. Time period 1943-2025, status 2025-04-30.

Funded currently or in the past by:

- Federal Office of Meteorology and Climatology MeteoSwiss in the context of GCOS Switzerland
- Meteodat GmbH
- Institute of Geography, University of Zurich
- WSL Institute for Snow and Avalanche Research SLF
- Institute of Geography, ETH Zurich (IAC ETH Zurich)
- AG Kraftwerk Wägital (AXPO and EWZ)

See also https://www.meteodat.ch/waegital.html

gcos

display_name: gcos

meteodat-gmbh

display_name: meteodat-gmbh

snow

display_name: snow

snow-water-equivalent

display_name: snow-water-equivalent

wagital

display_name: wagital

educ

en: Education, culture and sport

en: Snow water equivalent for reference date April 1 for Wägital catchment, starting 1943


en: discharge water-temperature hydrology climate-change-impact model

en: Data access

en:
This work presents the first extensive study of climate change impacts on rivers temperature in Switzerland. Results show that even for low emissions scenarios, water temperature increase will lead to adverse effect for both ecosystems and socioeconomic sectors (such as nuclear plant cooling) throughout the 21st century. For high emissions scenarios, the effect will be worsen. This study also shows that water warming in summer will be more important in Alpine regions than in lowlands.
This material is distributed under CC BY 4.0 license (https://creativecommons.org/licenses/by/4.0/legalcode).

climate-change-impact

display_name: climate-change-impact

discharge

display_name: discharge

hydrology

display_name: hydrology

model

display_name: model

water-temperature

display_name: water-temperature

en: Dataset for: Future water temperature of rivers in Switzerland under climate change investigated with physics-based models


modeling-snow-failure-with-dem

title_for_slug: modeling-snow-failure-with-dem

en: snow-avalanche snow-micro-mechanics snow-failure snow discrete-element-modelling

en: Read-me

en: The read-me file contains a description of all the data provided in the zip file.

en: Dataset

en: The zip file contains the data underlying the figures presented in Bobillier et al. (2019). The figures can be reproduced with the python file, which is also provided.

en: Python file

en: Python file to reproduce the figures in Bobillier et al. (2019)

mimetype: text/x-python

en: This data set includes the modeling results described in the research article by Bobiller et al. (2020). All the figures in the article can be reproduced with the data provided.

discrete-element-modelling

display_name: discrete-element-modelling

snow-avalanche

display_name: snow-avalanche

snow-failure

display_name: snow-failure

snow-micro-mechanics

display_name: snow-micro-mechanics

en: Modeling snow failure with DEM


en: soil-ph switzerland ecological-maps soil-moisture ecological-indicator-values soil-mapping landolt plants

en: Description

en: Description of the predictors provided in this dataset

en: Predictors

en: Predictors generated and used in Descombes et al. (2020)

en:
Ecologically meaningful predictors are often neglected in plant distribution studies, resulting in incomplete niche quantification and low predictive power of species distribution models (SDMs). Because environmental data are rare and expensive to collect, and because their relationship with local climatic and topographic conditions are complex, mapping them over large geographic extents and at high spatial resolution remains a major challenge. Here, we derived environmental data layers by mapping ecological indicator values (EIVs) in space by using a large set of environmental predictors in Switzerland.

This dataset contains the predictors (raster layers) generated and used in the following publication (Descombes et al. 2020). Only predictors for which we have the rights to share them are provided. Other datasets and predictors can be accessed via the original data provider. Details on the predictors and sources are fully described in the publication. The predictors are provided as GeoTIFF files, at 93 m spatial resolution and Mercator projection ("+proj=merc +lon_0=0 +k=1 +x_0=0 +y_0=0 +ellps=WGS84 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs"). The excel file (xlsx) provides a short description of the raster layers.

Paper Citation:

Descombes, P. et al. (2020). Spatial modelling of ecological indicator values improves predictions of plant distributions in complex landscapes. Ecography. (accepted)

ecological-indicator-values

display_name: ecological-indicator-values

ecological-maps

display_name: ecological-maps

landolt

display_name: landolt

plants

display_name: plants

soil-mapping

display_name: soil-mapping

soil-moisture

display_name: soil-moisture

soil-ph

display_name: soil-ph

switzerland

display_name: switzerland

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


maintainer: Brian W. McArdell

en: illgraben magnitude debris-flow monitoring-station force-plate

en: Illgraben debris-flow characteristics 2023

en:
List of key debris flow variables from the WSL Illgraben monitoring station (2023) such as occurrence date and time, peak flow depth, peak flow velocity, total volume and bulk density.
This table contains values based on our current analysis methods. The list will be updated annually after each debris flow season, and as our methods continue to improve, individual values may change slightly in the future.

debris-flow

display_name: debris-flow

force-plate

display_name: force-plate

illgraben

display_name: illgraben

magnitude

display_name: magnitude

monitoring-station

display_name: monitoring-station

educ

en: Education, culture and sport


en: hill atmosphere deposition snow particles dust turbulence

en: preferential deposition patterns of all simulations performed

en: The data consist of matlab files. Each files contains a 2D array with the values of deposition at the surface nodes. Each array has Nx x Ny values. Please refer to the original paper for additional information on the spatial resolution and grid size.

en:
Preferential deposition of snow and dust over complex terrain is responsible for a wide range of environmental processes, and accounts for a significant source of uncertainty in surface mass balances of cold and arid regions. Despite the growing body of literature on the subject, previous studies reported contradictory results on the location and magnitude of deposition maxima and minima. This study aims at unraveling the governing processes of preferential deposition in neutrally stable atmosphere and to reconcile seemingly inconsistent results of previous works. For this purpose, a comprehensive modeling approach is developed, based on large eddy simulations of the turbulent airflow, Lagrangian stochastic model of particle trajectories, and immersed-boundary method to represent the underlying topography. The model performance is tested against wind tunnel measurements of dust deposition around isolated and sequential hills. A scale analysis is then performed to investigate the dependence of snowfall deposition on the particle Froude and Stokes numbers, which fully account for the governing processes of inertia, flow advection, and gravity. Additional simulations are performed, to test whether the often used assumption of inertialess particles yields accurate deposition patterns. We finally show that our scale analysis provides qualitatively similar results for hills with different aspect ratios.

This dataset contains the results of the LES-LSM model. Each Matlab file contains a 2D array of deposition values (in kg/m2) in each surface node (ix, iy) of the Cartesian grid. The file names are consistent with the simulation numbers listed in the original paper. For additional information, please refer to "Preferential deposition of snow and dust over hills: governing processes and relevant scales" by F. Comola, M. G. Giometto, S. T. Salesky, M. B. Parlange, and M. Lehning, Journal of Geophysical Research: Atmospheres, 2019.

atmosphere

display_name: atmosphere

deposition

display_name: deposition

dust

display_name: dust

hill

display_name: hill

particles

display_name: particles

snow

display_name: snow

turbulence

display_name: turbulence


en: sentinel-2 force raster-processing switzerland remote-sensing

media_type: image/tiff

en: An example of the index EVI for one of the generated 30 by 30 km tiles located around the city of Zürich. The values are multiplied by 10.000. The date of the image is 24.07.2018.

format: TIFF

en: Parameter file that defined all the parameters for processing the Sentinel-2 Level 2 imagery

format: OCTET

en:
We processed Sentinel-2 images from 2017 to 2023 for Switzerland with the Software FORCE (Frantz 2019). The respective parameter files can be found here: [Github](https://github.com/TLKoch/Sentinel-2_CH). All the images consist of several TB and therefore, access will be granted upon request.
The available bands (in spatial reference system EPSG 3035) are the following:
*Red, Green, Blue, NIR, Red-Edge-1, Red-Edge-2, Red-Edge-3, SWIR-1, SWIR-2*
The available indices (in spatial reference system EPSG 3035) are the following:
*CCI, CIRE, NDWI/NDMI, NDVI, EVI*
Further indices might be provided upon request.

 Processing
After downloading Level 1 data for the 14 Sentinel-2 tiles covering Switzerland (T31TGN, T32TLT, T32TMT, T32UMU, T32TNT, T32TPT, T31TGM, T32TLS, T32TMS, T32TNS, T32TPS, T32TLR, T32TMR, T32TNR) with an estimated cloud cover of less than 80 \%, we processed the data further with FORCE v. 3.7.8-12.
FORCE was used for radiometric correction, including atmospheric and topographic corrections using the digital elevation model from Copernicus Land Monitoring Service (EU-DEM v. 1.1), with a 25 m spatial resolution, a bidirectional reflectance distribution function (BRDF) correction, and an adjacency effect correction. For cloud masking, the improved Fmask algorithm with buffers of 300 m for clouds, 90 m for shadows, and 30 m for snow were used (Frantz et al. 2018; Zhu et al. 2015). All bands were resampled using cubic convolution to 10 m spatial resolution. Shadows, low and poor illumination as well as saturation were masked out. The co-registration of all images was made with monthly composites of near-infrared Landsat Collection 2 images from 2014 to 2021 (Rengarajan et al. 2020;Rufin et al. 2021). With this the geometric consistency improved. The processed images are available in tiles of 30 by 30 km.

 Example images
Uploaded is an example of the index EVI for one of the generated 30 by 30 km tiles located around the city of Zürich. The values are multiplied by 10.000. The date of the image is 24.07.2018.

force

display_name: force

raster-processing

display_name: raster-processing

remote-sensing

display_name: remote-sensing

en: Sentinel-2 imagery of Switzerland