maintainer: Anita C. Risch

en: weed-management native-plant non-native-plant herbivory grassland

en: Data file native and non-native plant interactions in Australian grasslands

en:
taxa tab:	list and overview of all the recorded species

* family:                 family of the plant

* genus:                genus of the plant

* species:                plant species name

* origin:                indicates whether the plant is native to Australia or not (non-native)

* common name:	        common name of the plant species

* functional group:	        functional group of the plant species: forb, graminoid, fern, tree

* functional group detailed:	gives more detail about the type of graminoid and forb: legume, forb (non-leguminous),
                        grass, sedge, rush, fern, tree

* lifeform:                annual or perennial lifeform (species which can have both of these lifeforms where
                        considered as annuals)

plot tab:	list of species found in each plot and their cover (%)

* sampling.session:        provides information about the sampling time:
                        May2020 = data that was collected in May 2020
                        Nov2020 = data that was collected in November 2020

* farm.name:	            name of the farms where the sampling took place:
                        SF = farm of the Southern group
                        NF = farm of the Northern group
                        numbers 1-3 = randomly allocated to the Southern group of farms
                        numbers 4-6 = randomly allocated to the Northern group of farms

* site.type:	                KG: Kangaroo grass dominated site
                        ALG: ALG+KG site (Kangarooo grass and African lovegrass co-dominated site)

* plot.no:                plot number: 9-12

* scientific.name:	        scientific name of the plant species found in a certain plot

* functional group:	        indicates whether the species found is a tree, forb, graminoid or fern

* functional group detailed:	indicates whether the species found is a tree, legume, forb (non-leguminous),
                        grass, sedge, rush, fern

* lifeform:                specifies the lifeform of the species: annual or perennial lifeform
                        (species which can have both of these lifeforms where considered as annuals)

en:
This dataset contains all data, on which the following publication below is based.

Paper Citation:

_Schlierenzauer, C., Risch, A.C., Schütz, M., Firn, J. 2021. Non-native Eragrostis curvula reduces plant species diversity in pastures of South-eastern Australia even when native Themeda triandra remains co-dominant. Plants 10, 596._

Please cite this paper together with the citation for the datafile.

Study area
The study was conducted in the lowland grassy woodlands of the Bega Valley Region, which is located in the south-east corner of New South Wales, Australia. Embedded between the Pacific Ocean and the Australian Alps, the lowland grassy woodlands are mostly located on granitic substrates and reach elevations of roughly 500 m above sea level. Typically, these grassy woodlands receive less precipitation (mean annual precipitation between 700-1100 mm) compared to the more elevated areas that surround them (NSW Government - Office of Environment and Heritage 2017).
The vegetation is dominated by an open tree canopy layer consisting of Eucalyptus tereticornis Sm, Angophora floribunda Sm. (Sweet) and a range of other eucalypt species. Sometimes shrub or small trees are also present, whereas grasses and forbs form the ground-cover. In areas without intensive agricultural history, this layer is dominated by perennial, tussock grasses such as Themeda triandra Forssk, Microlaena stipoides R.Br (Weeping Grass), Eragrostis leptostachya Steud. (Paddock Lovegrass) and Echinopogon ovatus P.Beauv (Forest Hedgehog Grass). The remaining inter-tussock spaces are occupied by a diversity of growth-restricted grasses and herbaceous forbs (NSW - Department of Planing, Industries and Environment 2019; NSW Government - Office of Environment and Heritage 2017).
Clearing, pasture sowing, fertilizer application and livestock grazing resulted in a dramatic decrease in the extent of these natural woodlands, with less than five percent within conservation reserves and overall, with only about 20% of their original extent in New South Wales still existing (Tozer et al. 2010). The remaining areas outside of reserves are threatened by altered fire frequencies, habitat clearing, livestock grazing and especially by non-native plant invasion, particularly Eragrostis curvula (Schrad.) Nees. For this reason, the grassy woodlands are listed as an endangered ecological community in the NSW state legislation. Additionally, they are considered as critically endangered by the Commonwealth of Australia (Threatened Species Scientific Committee (TSSC) 2013).

Experimental design and sampling
The study was conducted on six farms and in each of them two sites were chosen, representing a paired design. One of the sites at each farm is dominated by native Themeda triandra, the other one co-dominated by non-native Eragrostis curvula and Themeda triandra. All farms are within a radius of approximately 10 km from the town Candelo. Three of the farms are located North (36°40’ to 36°42’ S and 149°38’ to 149°42’ E) and three of them are located South (36°51’ to 36°49’ S and 149°38’ to 149°42’ E) of Candelo.
Non-native herbivores (mainly cattle, sheep and rabbits) and native herbivorous marsupials (mainly kangaroos, wallabies and wombats) are present in the area of these sites. On each site, data was collected within four plots (each 1 x 1 m) in May and November 2020. All plant species found within a plot were recorded and their relative abundance was estimated.

References
NSW - Department of Planing, Industries and Environment. 2019. “Lowland Grassy Woodland in the South East Corner Bioregion - Endangered Ecological Community Listing.” https://www.environment.nsw.gov.au/topics/animals-and-plants/threatened-species/nsw-threatened-species-scientific-committee/determinations/final-determinations/2004-2007/lowland-grassy-woodland-south-east-corner-bioregion-endangered-ecological-community-l (February 18, 2021).
NSW Government - Office of Environment and Heritage. 2017. “Lowland Grassy Woodland in the South East Corner Bioregion - Profile.” https://www.environment.nsw.gov.au/threatenedSpeciesApp/profile.aspx?id=20070 (January 31, 2021).
Threatened Species Scientific Committee (TSSC). 2013. Environment Protection and Biodiversity Conservation Act 1999 (EPBC Act) Conservation Advice for Lowland Grassy Woodland in the South East Corner Bioregion. http://www.environment.gov.au/biodiversity/threatened/communities/pubs/82-conservation-advice.pdf.
Tozer, Mark et al. 2010. “Native Vegetation of Southeast NSW: A Revised Classification and Map for the Coast and Eastern Tablelands.” Cunninghamia : a journal of plant ecology for eastern Australia 11(3): 359–406.

grassland

display_name: grassland

herbivory

display_name: herbivory

native-plant

display_name: native-plant

non-native-plant

display_name: non-native-plant

weed-management

display_name: weed-management

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Native and no-native plant interactions in Australian grasslands


maintainer: Frank Techel

en: avalanche-forecast machine-learning spatial-modelling forecast-models avalanche-release-probability

state: active

type: dataset

en: Model predictions (interpolated)

media_type: application/zip

en: The zip file contains csv-files the interpolated model predictions for three models, in forecast and nowcast-mode, for the three different data sets, as described in the publication.

format: ZIP

en: Snowline estimates 2023/2024

en: Daily snowline estimates provided by observers for North (aspect = 0) and South (aspect = 180) slopes for the 2023/2024 season. For aspects in between North and South, values are interpolated. Contains observation date (date), coordinates (Swiss coordinates x, y), snowline elevation (snowline), and aspect.

format: XLS

en: GPS data and human-triggered avalanches

en: Contains (1) the subset of points extracted from GPS tracks recorded during backcountry touring and uploaded to the website skitourenguru.ch and (2) the corresponding subset of human-triggered avalanches. Data (1) was provided by Skitourenguru GmbH and data (2) was collected by SLF. - Variables contained are date, Swiss coordinates (x, y), aspect (N = 0, NE = 45, ...), elevation (ele), and event (event = 1, non-event = 0).

en: Snowline estimates 2022/2023

en: Daily snowline estimates provided by observers for North (aspect = 0) and South (aspect = 180) slopes for the 2022/2023 season. For aspects in between North and South, values are interpolated. Contains observation date (date), coordinates (Swiss coordinates x, y), snowline elevation (snowline), and aspect.

en: Natural avalanches 2023/2024

en: Natural avalanche observation (dry avalanches). 2023/2024 forecasting season.

en: Model predictions (raw data)

en: Model predictions (raw data) for three models, in nowcast and forecast mode. Not all models are available for both seasons. - These data are the basis for the interpolated predictions, which can be found in the other zip-folder

en: Avalanche forecast

en: Data contains forecasts relating to dry-snow avalanche conditions only. Forecast issued at 17.00 local time. Contains variables for the warning region (sector_id), publication date (date), danger level - sub-level combination expressed using numeric values (integer value of danger level -0.33 for sub-level minus, -0 for sub-level neutral, +0.33 for sub-level plus, altitude as indicated in the bulletin, and whether aspect (North = 0, Northeast = 45, ...) was indicated in the bulletin (no: 0, yes: 1).

en: Natural avalanches 2022/2023

en: Natural avalanche observation (dry avalanches). 2022-2023 forecasting season.

en: Randomly sampled subset of grid points from 1 km DEM

en: Contains the randomly sampled subset of grid points from 1 km DEM. Three variables: coordinates (x, y) and elevation (elev).

en: Human-triggered avalanches 2022/2023

en: The file contains the reported human-triggered avalanches. The variables are as follows: id, release date (date), name, Swiss coordinates (x,y), elevation (ele), remark, reported avalanche size expressed using avalanche activity index (sizeAAI), aspect, event type (type), event (yes = 1, no = 0)

en: Human-triggered avalanches 2023/2024

en:
This data set was used in the analysis by Techel et al. **Can model-based avalanche forecasts match the discriminatory skill of human danger level forecasts? A comparison from Switzerland**. Please note that the title of the preprint was *Forecasting avalanche danger: human-made forecasts vs. fully automated model-driven predictions*, submitted to *Natural Hazards Earth System Sciences* on 20 Aug 2024.
The final manuscript used data from three forecasting seasons (2022/2023, 2023/2024, 2024/2025) , the preprint two forecasting seasons (2022/2023, 2023/2024) .
Currently, the repository contains data from two avalanche forecasting seasons in Switzerland. The third season will be added (to be done, 30 June 2025).
**Interpolated predictions**
- The .zip file contains the interpolated predictions for the three models in nowcast- and forecast- mode. This data is needed to reproduce the figures and tables in the submitted preprint.
The other data are the **raw data** underlying the interpolations:
- Avalanche forecast by WSL Institute for Snow and Avalanche Research SLF, published at 17.00 local time, valid for the following 24 hours and relating to dry snow avalanche conditions.
- Model predictions in *nowcast*- and *forecast*-mode for three models (*danger level*, *instability*, *natural avalanche*), valid for 12.00 local time
- Subset of points extracted from GPS tracks (courtesy of Skitourenguru GmbH)
- Avalanche observations - natural avalanches and human-triggered avalanches
- Estimates of the snowline
- Randomly chosen subset of grid points used for generating reference distributions
For details regarding the data sets refer to the publication.

avalanche-forecast

display_name: avalanche-forecast

avalanche-release-probability

display_name: avalanche-release-probability

forecast-models

display_name: forecast-models

machine-learning

display_name: machine-learning

spatial-modelling

display_name: spatial-modelling

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Evaluating the predictive performance of human avalanche forecasts and model predictions in Switzerland


maintainer: EnviDat Support

en: airborne-laser-scanning canopy-height snow-depth forest-structure snow-distribution

en: Terrain elevation maps

en: Digital elevation model computed from snow-off flights for each of the field areas Davos, Engadine and Grand Mesa

mimetype: application/zip

en: Snow depth maps

en: Snow depth maps from two snow-on flights at each of the three field areas Davos (March 20th and 31st 2017), Engadien (March 20th and 31st, 2017) and Grand Mesa (February 8th and 16th, 2017)

en: Canopy height maps

en: Canopy height maps of each of the three field areas Davos, Engadine and Grand Mesa

en: Readme

media_type: text/plain

format: TXT

mimetype: text/plain

en:
This dataset includes snow depth, canopy height and terrain elevation maps of forest stands in the Grisons (CH) and at Grand Mesa (CO,USA) derived from airborne lidar. Data were acquired i) within a pilot mission of NASA's Airborne Snow Observatory in the Swiss Alps in March 2017 and ii) during NASA’s SnowEx campaign at Grand Mesa in February 2017. Snow depth maps are available for two dates separated by approx.1 week, and include an area of ca. 0.5km2 for each of the three sites Davos, Engadine and Grand Mesa.
All data were presented and analyzed in the publication 'Revisiting Snow Cover Variability and Canopy Structure within Forest Stands: Insights from Airborne Lidar Data' (Mazzotti et al., 2019, WRR, doi: 10.1029/2019WR024898). This publication must be cited when using this dataset.

Paper Citation:
 > _Giulia Mazzotti; William Ryan Currier; Jeffrey S. Deems; Justin M. Pflug; Jessica D. Lundquist; Tobias Jonas (2019). Revisiting Snow Cover Variability and Canopy Structure Within Forest Stands: Insights From Airborne Lidar Data. Water Resources Research, 55, 6198– 6216, [doi: 10.1029/2019WR024898](https://doi.org/10.1029/2019WR024898)._

airborne-laser-scanning

display_name: airborne-laser-scanning

canopy-height

display_name: canopy-height

forest-structure

display_name: forest-structure

snow-depth

display_name: snow-depth

snow-distribution

display_name: snow-distribution

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: ALS-based snow depth and canopy height maps from flights in 2017 (Grisons, CH and Grand Mesa, CO)


en: oak cenococcum-geophilum rhythmic-growth ectomycorrhiza piloderma-croceum quercus-robur

media_type: text/csv

en:
Contains phenotypic data assessed during the destructive sampling step of the experiment.
Columns:
- ID = Tree identifier.
- Treatment = Experimental treatment.
- nSF = Number of completed shoot flushes.
- Max_Stages_Reached = Total number of growth stages reached during the experiment.
- n_L_SF1 = Number of leaves of the second newest shoot flush at time of sampling.
- n_L_SF2 = Number of leaves of the newest shoot flush at time of sampling.
- Alive = Plant alive or not.
- Contamination = Plant contaminated or not.
- Exclude = Exclude plant or not.
- Shoot_Length_Init = Shoot length at start of the experiment.
- Shoot_Length = Shoot length at sampling.
- Delta_Length = Shoot length increase during experiment.
- FW_Plant = Fresh weight total plant.
- DW_Plant = Dry weight total plant.
- FW_Shoot = Fresh weight shoot.
- DW_Shoot = Dry weight shoot.
- FW_Stem = Fresh weight stem.
- DW_Stem = Dry weight stem.
- FW_L_SF1 = Fresh weight leaves second newest shoot flush.
- DW_L_SF1 = Dry weight leaves second newest shoot flush.
- FW_L_SF2 = Fresh weight leaves newest shoot flush.
- DW_L_SF2 = Dry weight leaves newest shoot flush.
- FW_L_Rest = Fresh weight remaining leaves.
- DW_L_Rest = Dry weight remaining leaves.
- FW_Bud = Fresh weight bud.
- DW_Bud = Dry weight bud.
- FW_Roots_Total = Fresh weight total roots.
- DW_Roots_Total = Dry weight total roots.
- FW_PR = Fresh weight principal roots.
- DW_PR = Dry weight principal roots.
- FW_LR = Fresh weight lateral roots.
- DW_LR = Dry weight lateral roots.
- A_L_SF1 = Leave area second newest shoot flush.
- A_L_SF2 = Leave area newest shoot flush.
- N_Ceno = Number of root tips mycorrhized by *Cenococcum geophilum*.
- N_Pilo = Number of root tips mycorrhized by *Piloderma croceum*.
- N_Other = Number of root tips mycorrhized by other species.
- N_No = Number of not mycorrhized root tips.
- Length_Tot = Total root length.
- Area_Tot = Total root surface area.
- Diameter_Avg = Average root diameter.
- Root_Vol = Total root volume.
- Tips = Total number root tips.
- Forks = Total number root forks.
- Crossings = Total number root crossings.
- Length_Fine = Root length fine roots (diameter < 1mm).
- SA_Fine = Surface area fine roots (diameter < 1mm).
- Vol_Fine = Volume fine roots (diameter < 1mm).

format: CSV

en:
Contains growth stage data assessed over the experimental period.
Columns:
- ID = Tree identifier.
- Set = Date of plant preparation.
- Treatment = Experimental treatment.
- Date = Date of growth stage assessment,
- Days = Number of past days since start of experiment.
- Stage = Growth stage (XY = Groth cycle & development stage).
- Week = Experimental week.

en:
In this experiment, we investigated the inoculation-effects of two ectomycorrhizal fungi (EMF) species with contrasting evolutionary histories, ecological properties, host-preferences, and habitat-ranges on phenotypic responses and growth dynamics of pedunculate oak (*Quercus robur*), an ecologically and economically important temperate forest tree species.

We set up the mycorrhization experiment using 96 plants of a genetically uniform *Q. robur* clone (DF159) and applied four treatments: A control treatment; an inoculation-treatment with the cosmopolitan Ascomycete *Cenococcum geophilum*, which is commonly found in oak forests; an inoculation-treatment with the Basidiomycete *Piloderma croceum*, which has not yet been found in natural oak forests but has been shown in previous experiments to support oak growth; and a co-inoculation treatment. We then assessed growth stage development of the trees over eight experimental weeks and measured various phenotypic traits during a destructive sampling.

cenococcum-geophilum

display_name: cenococcum-geophilum

ectomycorrhiza

display_name: ectomycorrhiza

oak

display_name: oak

piloderma-croceum

display_name: piloderma-croceum

quercus-robur

display_name: quercus-robur

rhythmic-growth

display_name: rhythmic-growth

en: Phenotypic and Growth Stage Development Data of a Quercus robur Mycorrhization Experiment


maintainer: Michael Eisenring

en: alan european-beech phytochemistry light-pollution insect-herbivores

en: Raw_data_Ceppi et al..xlsx

en: Raw data for the Publication Ceppi et al. 2025 in Journal of Applied Ecology: ARTIFICAL NIGHT LIGHT INTENSITY MODULATES HERBIVORY AND PHYTOCHEMISTRY IN EUROPEAN BEECH

en: Raw data on plant morphological traits, phytochemistry and herbivory that were analyzed in the study entitled: Artificial night light intensity modulates herbivory and phytochemistry in European beech

alan

display_name: alan

european-beech

display_name: european-beech

insect-herbivores

display_name: insect-herbivores

light-pollution

display_name: light-pollution

phytochemistry

display_name: phytochemistry

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Raw data - Artificial night light intensity modulates herbivory and phytochemistry in European beech


en: afforestation isotopes picea-abies subalpine belowground-biomass

en: This data set provides soil organic carbon, total nitrogen, and stable carbon isotope (13C) values of mineral soil (0-45cm), organic horizons (Oi, Oe, Oa), and root biomass of an afforestation sequence (0-130years) on a subalpine pasture in Jaun, Switzerland.

afforestation

display_name: afforestation

belowground-biomass

display_name: belowground-biomass

isotopes

display_name: isotopes

picea-abies

display_name: picea-abies

subalpine

display_name: subalpine

en: Soil organic carbon stock of an afforestation sequence on a subalpine pasture


maintainer: Yohann Chauvier

en: landsca species-distribution accepted-name synonyms range-maps r-package hard-limit species-observations gbif filtering conservation occurrence-records taxonomy large-scale flags ecoregions

en: wsl.gbif R package version 0.1 (deprecated)

en: Test version, not to be used.

en: gbif.range R package version 0.2 (deprecated)

en: gbif.range R package version 1.1 (current)

en: GitHub URL

format: SERVICE

en: Although species range may be obtained using expert maps or modeling methods, expert data is often species-limited and statistical models need more technical expertise as well as many species observations. When unavailable, such information may be extracted from the Global Biodiversity Information facility (GBIF), the largest public data repository inventorying georeferenced species observations worldwide. However, retrieving GBIF records at large scale may be tedious if users are unaware of specific tools and functions that need to be employed. Here we present *gbif.range*, an R library that contains automated methods to generate species range maps from scratch using in-house ecoregions shapefiles and an easy-to-use GBIF download wrapper. Finally, this library also offers a set of additional very useful parameters and functions for large GBIF datasets (generate doi, extract GBIF taxonomy, records filtering...). [gbif.range R project](https://github.com/8Ginette8/gbif.range)

accepted-name

display_name: accepted-name

conservation

display_name: conservation

ecoregions

display_name: ecoregions

filtering

display_name: filtering

flags

display_name: flags

gbif

display_name: gbif

hard-limit

display_name: hard-limit

landsca

display_name: landsca

large-scale

display_name: large-scale

occurrence-records

display_name: occurrence-records

r-package

display_name: r-package

range-maps

display_name: range-maps

species-distribution

display_name: species-distribution

species-observations

display_name: species-observations

synonyms

display_name: synonyms

taxonomy

display_name: taxonomy

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: gbif.range - An R package to generate species range maps based on ecoregions and a user-friendly GBIF wrapper


maintainer: James W. Kirchner

en: streamflow chloride catchment deuterium stable-water-isotopes tracer precipitation plynlimon

en: Data Set Documentation

media_type: application/pdf

en: This file contains a documentation of the data sets, including references to other helpful documentations.

format: PDF

mimetype: application/pdf

en: Weekly stable water isotopes

en: Data set of weekly stable water isotope data collected at Carreg Wen (precipitation) and Lower Hafren and Tanllwyth (streamflow).

en: 7-hourly stable water istopes

en: Data set of 7-hourly stable water isotope data measured at Carreg Wen (precipitation) and Upper Hafren (streamflow).

en: The data base contains timeseries of stable water isotopes in precipitation and streamflow at Plynlimon, Wales, UK. One data set contains weekly stable water isotope data from the Lower Hafren and Tanllwyth catchments, and the other data set contains 7-hourly stable water isotope data from Upper Hafren. Both data sets also include chloride concentrations in precipitation and streamflow.

catchment

display_name: catchment

chloride

display_name: chloride

deuterium

display_name: deuterium

plynlimon

display_name: plynlimon

precipitation

display_name: precipitation

stable-water-isotopes

display_name: stable-water-isotopes

streamflow

display_name: streamflow

tracer

display_name: tracer

en: Stable water isotopes in precipitation and streamflow at Plynlimon, Wales, UK


maintainer: Sebastian Schlögl

en: snow stable-boundary-layer turbulent-sensible-heat-fluxes atmosphere atmospheric-turbulence

en: Turbulence data AA00

en: sensor in 25 m height

en: Turbulence data GR00

en: sensor in 1 m height

en: Turbulence data WFJ07

en: lower sensor

en: Turbulence data WFJ11

en: Turbulence data PM07

en: SEE

en: sensor in 2 m height

en: NWW

en: sensor in 0.2 m height

en: upper sensor

en:
We used five different atmospheric turbulence datasets from four test sites, with these sites showing differences in their topographical characteristics. We chose one typical alpine test site with high topographical complexity (Weissfluhjoch, Davos, Switzerland) and three test sites consisting of one glacier site (Plaine Morte, Crans-Montana, Switzerland) and two polar sites (Greenland and Antarctica) representing a quasi-ideal site with homogeneous surface and quasi infinite fetch in all directions.
The turbulent sensible heat flux was calculated using the eddy-covariance method. Note that the sonic temperature fluctuations have been converted into virtual temperature fluctuations.
Three-dimensional wind velocity and air temperature were processed using a linear detrending (Rannik and Vesala, 1999) and a planar fit approach (Massmann and Lee, 2002) to rotate the coordinate system. Air temperature, relative humidity and air pressure from weather stations were used to calculate air properties, which are required for the data processing. The weather stations are located in the immediate vicinity of the turbulence tower and are affected by the same air masses. Turbulence data were averaged to 30-min intervals, whilst changing to a 15-min time interval marginally affects the heat fluxes at the Weissfluhjoch test site (Mott et al., 2011). Note that we define a negative sensible heat flux as being directed towards the snow surface and a positive sensible heat flux as being directed upwards.
The selected datasets and corresponding test sites are briefly introduced below:

Weissfluhjoch 2007 (WFJ07): A vertical set-up of two three-dimensional ultrasonic anemometers (CSAT3, Campbell Scientific, Inc.) was used at the traditional field site Weissfluhjoch (2540 m asl.) to measure three-dimensional wind velocity and air temperature at a frequency of 20 Hz. The sensors were mounted 3 m and 5 m above the ground and provided reliable data for 50 days between 11 February 2007 and 24 April 2007. Further information on the field campaign can be found in Stössel et al. (2010) and Mott et al. (2011).

Weissfluhjoch 2011-13 (WFJ11): Three-dimensional wind velocity and air temperature were recorded at 5 m above the ground at a frequency of 10 Hz with a three-dimensional ultrasonic anemometer (CSAT3). The analysis was conducted for data obtained between February and March in the years 2011-13.

Plaine Morte 2007 (PM07): Two three-dimensional ultrasonic anemometers (CSAT3) were installed on a horizontal boom facing opposite directions (west-north-west vs. east-south-east) at 3.75 m above the ground to measure air temperature and three-dimensional wind velocity at 20 Hz. The data were collected at the almost flat field site on the Plaine Morte glacier (2750 m asl.) near Crans-Montana, Switzerland from February to April 2007. High quality meteorological data were additionally recorded and used to force the model. A detailed description about the set-up at the Plaine Morte glacier can be found in Huwald et al. (2009) and Bou-Zeid et al. (2010).

Greenland 2000 (GR00): High-frequency three-dimensional ultrasonic anemometer measurements (CSAT3) were recorded at 50 Hz at the Summit Camp (72.3 °N, 38.8 °W, 3208 m asl.) located on the northern dome of the Greenland ice sheet. Data were collected at 1 m and 2 m above the snow surface during summer in 2000 and 2001. Additionally, meteorological measurements were obtained for the post processing and used to force the model. More information about the field campaign can be found in Cullen et al. (2007, 2014).

Antarctica 2000 (AA00): A set-up of three vertical three-dimensional ultrasonic anemometers (DA-600, Kaijo Denki) were installed at Mizuho Station (70°42' S, 44°20' E, 2230 m asl.) in Eastern Antarctica at 0.2, 1 and 25 m and recorded turbulence data at a frequency of 100 Hz from October to November 2000. Longwave and shortwave radiation, relative humidity, air and snow surface temperature were additionally measured and used to force the model. More information about the field campaign can be found in Nishimura and Nemoto (2005).

atmosphere

display_name: atmosphere

atmospheric-turbulence

display_name: atmospheric-turbulence

snow

display_name: snow

stable-boundary-layer

display_name: stable-boundary-layer

turbulent-sensible-heat-fluxes

display_name: turbulent-sensible-heat-fluxes

educ

en: Education, culture and sport

en: How do stability corrections perform in the stable boundary layer over snow?


maintainer: Felix Kienast

en: spatial-planning wind-power energy ecosystem-services landscape marxan optimization photovoltaic social-acceptance

en:
This is the compressed Shapefile (ESRI) from the MARXAN optimization with 2216 rows (objects) and 18 columns (variables) with sf (simple feature) and data frame classes.
Column description:
X01 = Planning_units (PUs)
X02 = incl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X03 = incl.OS. number of times pu was selected in MARXAN when optimized for social costs
X04 = incl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X05 = incl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X06 = incl.OS. total energy (MWh/a)
X07 = incl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X08 = incl.OS. energy from wind turbines (MWh/a)
X09 = incl.OS. energy from ground-mounted PV infrastructure (MWh/a)

X10 = excl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X11 = excl.OS. number of times pu was selected in MARXAN when optimized for social costs
X12 = excl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X13 = excl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X14 = excl.OS. total energy (MWh/a)
X15 = excl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X16 = excl.OS. energy from wind turbines (MWh/a)
X17 = excl.OS. energy from ground-mounted PV infrastructure (MWh/a)
geometry = Simple feature XY geometry (SFC_POINT) each representing the center of a 4x4km planning unit (PU) in EPSG 21781 (CRS CH1903 / LV03).

en:
This study examines the siting scenarios for renewable energy infrastructure (REI) in Switzerland, incorporating the external costs of ecosystem services and, innovatively, social preferences. This approach challenges the prevalent techno-economic siting paradigm, which often overlooks these externalities. To minimize the external costs of the scenarios while maximizing energy yield, Marxan, an optimization software, was employed.
MARXAN was run for 2 versions: a) without ground-mounted open space PV infrastructure (excl. OS) and b) with ground-mounted open space PV infrastructure (incl. OS). In each version optimization was done using ecological costs (ECUess) or social costs (ECUsoc) in a regular grid of 4x4km (planning unit).

File:
PU_data.shp: compressed Shapefile (ESRI) from the MARXAN optimization with 2216 rows (objects) and 18 columns (variables) with sf (simple feature) and data frame classes.

Headers are described below:
X01 = Planning_units (PUs)

X02 = incl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X03 = incl.OS. number of times pu was selected in MARXAN when optimized for social costs
X04 = incl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X05 = incl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X06 = incl.OS. total energy (MWh/a)
X07 = incl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X08 = incl.OS. energy from wind turbines (MWh/a)
X09 = incl.OS. energy from ground-mounted PV infrastructure (MWh/a)

X10 = excl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X11 = excl.OS. number of times pu was selected in MARXAN when optimized for social costs
X12 = excl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X13 = excl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X14 = excl.OS. total energy (MWh/a)
X15 = excl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X16 = excl.OS. energy from wind turbines (MWh/a)
X17 = excl.OS. energy from ground-mounted PV infrastructure (MWh/a)

geometry = Simple feature XY geometry (SFC_POINT) each representing the center of a 4x4km planning unit (PU) in EPSG 21781 (CRS CH1903 / LV03).

For MARXAN optimizations (for meaning of standard files in MARXAN see https://scholar.google.ch/scholar_url?url=https://courses.washington.edu/cfr590/software/Marxan1810/marxan_manual_1_8_2.pdf&hl=de&sa=X&ei=NAWHZI6JJ8PFmAGMo47oDQ&scisig=AGlGAw-DBrsV4kUzkR6GkN1jtG66&oi=scholarr), pu_data.shp was used to generate MARXAN files input.dat, pu.dat, puvfeat.dat, spec.dat.
Coordinate Reference System: CH1903 / LV03. EPSG: 21781.

ecosystem-services

display_name: ecosystem-services

energy

display_name: energy

landscape

display_name: landscape

marxan

display_name: marxan

optimization

display_name: optimization

photovoltaic

display_name: photovoltaic

social-acceptance

display_name: social-acceptance

spatial-planning

display_name: spatial-planning

wind-power

display_name: wind-power

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Optimizing renewable energy siting in the Swiss landscape


alan-spongy-moth-laboratory-experiment

title_for_slug: alan-spongy-moth-laboratory-experiment

en: insect-development lab-experiment alan spongy-moth light-pollution

en: Raw data used for the Pupation and Cox Hazard/Kaplan Meier Analysis.

en: Raw data modified and used for the Bodymass Analysis

en: R code for the pupation analysis and producing the graphics.

format: OCTET

en: R code for the Cox hazard analysis and producing the Kaplan Meier survival curves for both Mortality and Pupation.

en: R code for the bodymass analysis and producing the graphics.

en:
 Data and Code for ALAN Spongy Moth lab experiment
In this repository you will find all the raw datasets used for the data analysis performed in our paper about the impacts of artificial light at night (ALAN) on the development of Spongy Moth caterpillars. The files are attached as a csv file.
Also attached is all the R-code later used for the statistical analysis and for generating the graphics displayed in the paper. This files are attached as an R.file.

alan

display_name: alan

insect-development

display_name: insect-development

lab-experiment

display_name: lab-experiment

light-pollution

display_name: light-pollution

spongy-moth

display_name: spongy-moth

en: ALAN Spongy Moth Laboratory Experiment


disdrometer-data-davos-wolfgang

title_for_slug: disdrometer-data-davos-wolfgang

en: davos fall-velocity precipitation disdrometer raclets

en: Disdrometer Data Davos Wolfgang

en:
The zip folder contains one netCDF file per day for Davos Wolfgang from February 8 to March 19 2019 with a temporal resolution of 30 seconds (time in UTC) and includes:

- characteristics of hydrometeors (e.g. diameter, fall velocity, amount per diameter class,...)
- precipitation rate
- radar reflectivity
- visibility range
- weather codes
- instrument performance

en: The dataset contains information on precipitation amount and type for Davos Wolfgang (LON: 9.853594, LAT: 46.835577) from February 8 to March 19 2019. It includes: characteristics of hydrometeors (e.g. diameter, fall velocity, amount per diameter class,...), precipitation rate, radar reflectivity, visibility range, weather codes and instrument performance.

davos

display_name: davos

disdrometer

display_name: disdrometer

fall-velocity

display_name: fall-velocity

precipitation

display_name: precipitation

raclets

display_name: raclets


restoring-grassland-multifunctionality

title_for_slug: restoring-grassland-multifunctionality

en: restoration ecosystem-multifunctionality bacteria biodiversity mineralization grassland plants nematodes fungi soil-biodiversity

en: Please note that EMF, MF.below, MF.abio and Soil.hetero have been corrected.

en: Functional diversity above_belowground fauna

en: Please note that C.sto and Corg have been corrected.

en:
Please cite this paper together with the citation for the datafile.

Resch, M. C., Schütz, M., Buchmann, N., Frey, B., Graf, U., van der Putten, W. H., Zimmermann, S., Risch, A. C. 2021. Evaluating long-term success in grassland restoration – an ecosystem multifunctionality approach. Ecological Applications 31, e02271.

 Study area

The study was conducted in the Canton of Zurich, Switzerland, in and around two nature reserves Eigental and Altläufe der Glatt (47°27’ to 47°29’ N, 8°37’ to 8°32’ E, 417 to 572 m a.s.l.). All studied grasslands were located with a radius of approximately 4 km. Average monthly temperatures range from 0.7 ± 2.0 °C (January) to 19.0 ± 1.5 °C (July), and monthly precipitation range from 60 ± 42 mm (January) to 118 ± 46 mm (July [maxima]; 1989-2017; MeteoSchweiz 2018). In our study, we focused on semi-dry and semi-wet oligo- to mesotrophic grasslands characterized by high plant species richness and groundwater fluctuations throughout the year (Delarze et al. 2015, see also Resch et al. 2019).

 Experimental design and sampling

A large-scale restoration experiment to expand and reconnect isolated remnants of species-rich grasslands was initiated in the nature reserve Eigental in 1990. Twenty hectares of adjacent intensive grasslands were chosen for restoration. In 1995, three restoration methods of increasing intervention intensities were implemented. The goal of all three methods was to lower the availability of soil nutrients and hence, facilitate ecosystem development towards the targeted nutrient-poor grasslands. These methods were: Harvest only (hay harvest twice a year), Topsoil (removal of the nutrient-rich topsoil), and Topsoil+Propagules (topsoil removal combined with the application of hay from target vegetation). Plant biomass harvest (once a year in late summer/early autumn) commenced in Topsoil and Topsoil+Propagules five years after the soils were removed and is still ongoing today. We measured restoration success by comparing the three restoration methods with intensively managed (Initial) and semi-natural grasslands (Target) 22 years after restoration. Initial grassland sites share the same agricultural history as the restored sites: mowing and subsequent fertilizing (manure) up to five times a year, as well as different tillage regimes (Resch et al. 2019). Target sites were the sites from which hay for seeding the Topsoil+Propagules sites was collected. Soil conditions (i.e., soil types, soil texture) were comparable to those found in the restored grasslands (Resch et al. 2019). Additionally, Target sites were selected to represent a variety of semi-natural grasslands, including semi-dry to semi-wet conditions. In Target grasslands, biomass is harvested once a year in late summer or early autumn. Eleven 5 m x 5 m (25 m2) plots were randomly established in each of the five treatments (in total 55 plots; for a detailed map see Neff et al. 2020). An additional 2 m x 2 m (4 m2) subplot was randomly established at least 2 m away from each 25 m2 plot for destructive sampling. Data sampling took place between June and September 2017.

Vegetation properties

All plant species were identified within the 25 m2 plots (nomenclature: Lauber and Wagner 1996) in mid-June 2017 (in total 250 species). Vegetation structure and plant biomass were assessed diagonally on a transect of 2 m x 10 cm within the 25 m2 plot in early July 2017. We measured the maximum and mean height of the vegetation at the start, middle and end of the transect and calculated the standard deviation of these measures to describe vegetation structural heterogeneity (Schuldt et al. 2019). Thereafter, biomass was clipped on the entire transect to 1 cm height, sorted into five functional groups (graminoids, forbs, legumes, litter, and woody species), dried at 60 °C for 48 h, and weighed (Meyer et al. 2015).

 Aboveground arthropods

Aboveground arthropods were sampled at two locations in each 25 m2 plot in early July 2017 (see also Neff et al. 2020). Briefly, two cylindrical baskets (50 cm diameter, 67 cm height; woven fabric) were thrown simultaneously from outside the plot into two opposite corners. A closable mosquito mesh sleeve was mounted to the top of the baskets and an integrated metal ring at the bottom was fixed to the ground with metal stakes to assure that insects could not escape. A suction sampler (Vortis, Burkhard Manufacturing Co. Ltd., Hertfordshire, England) was then inserted into one of the baskets through the opening of the sleeve and the plot was “vacuumed" twice for 105 seconds with a 30 seconds break. The collected animals were immediately transferred into 70% ethanol. Arthropods were sorted and assigned to 23 taxonomic groups. Holometabolic larvae were lumped into one category while hemimetabolic larvae were grouped separately from adults in the respective taxonomic rank. We used mean values of individuals per plot for total abundance. Aboveground arthropod richness was defined by the number of different taxa to lowest taxonomic level (in total 23 taxa). All taxa were assigned to one of five trophic levels: 1) primary producers, 2) primary consumers, 3) secondary consumers, 4) tertiary consumers, and 5) quaternary consumers.

 Belowground fauna

Sampling of all belowground fauna took place in mid-July 2017. Earthworms were sampled in two 30 cm x 30 cm x 20 cm soil monoliths at two opposite corners of the 25 m2 plot (opposite to aboveground arthropod sampling). The excavated soil monolith was broken by hand, all earthworms collected and immediately transferred in a 4% formaldehyde solution. Thereafter, earthworm individuals were identified to species level (in total 10 taxa; Christian and Zicsi 1999) and species assigned to three functional groups (Bouché 1977).
To assess soil arthropod communities, we randomly collected one undisturbed soil core (5 cm diameter, 12 cm depth) in each 4 m2 subplot with a slide hammer corer lined with a plastic sleeve (AMS Samplers, American Falls, Idaho, USA). Soil arthropods were extracted using Berlese-Tullgren funnels (3 mm mesh), starting the day of sampling and lasting 14 days. Individuals were stored in 70% ethanol. Soil arthropods were assigned to 41 taxonomic groups and 4 feeding types. Holometabolic and hemimetabolic larvae were treated as previously described for aboveground arthropods. Belowground arthropod richness refers to the 41 taxonomic groups.

For soil nematode sampling, we randomly collected eight soil cores of 2.2 cm diameter (Giddings Machine Company, Windsor, CO, USA) within each 4 m2 subplot to a depth of 12 cm. The eight cores were combined, gently homogenized, placed in coolers, kept at 4 °C and transported to the laboratory at NIOO in Wageningen (NL) within one week after collection. Free-living nematodes were extracted from 200 g of fresh soil using Oostenbrink elutriator (Oostenbrink 1960) and prepared for morphological identification and quantification as described by Resch et al. (2019). Nematodes were identified to family level (39 taxa) according to Bongers (1988), assigned to 17 functional groups, 5 feeding types and 5 colonizer-persister (C-P) classes (Yeates et al. 1993, Bongers 1990, Resch et al. 2019).

We randomly collected two more soil cores (2.2 cm diameter x 12 cm depth) within each 4 m2 subplot to determine soil microbial communities. Again, the soil cores were combined, homogenized, placed in coolers and transported to the laboratory at WSL in Birmensdorf (Switzerland) where the metagenomic DNA was extracted from 8 g sieved soil (2 mm) using the DNeasy PowerMax Soil Kit (Quiagen, Hilden, NRW, GER) according to the manufacturer`s instructions. PCR amplification of the V3-V4 region of the prokaryotic small-subunit (16S) and the ribosomal internal transcribed spacer region (ITS2) of eukaryotes was performed with 1 ng of template DNA utilizing PCR primers and conditions as previously described (Frey et al., 2016). PCRs were run in triplicates and pooled. The pooled amplicons were sent to the Genome Quebec Innovation Centre (Montreal, QC, Canada) for barcoding using the Fluidigm Access Array technology (Fluidigm) and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, CA, USA). Quality filtering, clustering into operational taxonomic units (OTUs) and taxonomic assignment were performed as described by Frey et al. (2016) and Adamczyk et al. (2019). We used a customised pipeline largely based on UPARSE (Edgar 2013) implemented in USEARCH v. 9.2 (Edgar 2010). After discarding singletons of dereplicated sequences, clustering into OTUs with 97% sequence similarity was performed (Edgar 2013). Quality-filtered reads were mapped on the filtered set of centroid sequences. Taxonomic classification of prokaryotic and fungal sequences was conducted querying against most recent versions of SILVA (v.132, Quast et al. 2013) and UNITE (v.8, Nilsson et al. 2018). Only taxonomic assignments with confidence rankings equal or higher than 0.8 were accepted (assignments below 0.8 set to unclassified). Prokaryotic OTUs assigned to mitochondria or chloroplasts as well as eukaryotic OTUs assigned other than fungi were removed prior to data analysis. In addition, prokaryotic and fungal datasets were filtered to discard singletons and doubletons. Thereafter, OTU abundance matrices were rarefied to the lowest number of sequences per community, to normalize the total number of reads and achieve parity between samples (Prokaryota: 29,843 reads; Fungi: 26,690 reads). Finally, prokaryotic and fungal observed richness (number of OTUs) were estimated (Prokaryota: 14,010 OTUs; Fungi: 5,813 OTUs). For prokaryotes, we distinguished five and for fungi six functional types based on lowest taxonomic resolution (Nguyen et al. 2016, Tedersoo et al. 2014). Belowground taxon richness was defined by the total number of earthworm, arthropod, nematode, fungi, and prokaryote taxa assigned to lowest taxonomic level. Finally, all belowground taxa were assigned to the same five trophic levels as the aboveground arthropods.

 Soil chemical and physical properties, soil nitrogen mineralization

We randomly collected three 5 cm diameter x 12 cm depth soil samples in each 4 m2 subplot with a slide hammer corer (AMS Samplers, American Falls, Idaho, USA), pooled them and then made two subsamples. One was field-fresh and stored at 3 °C until analysis, the other was dried for 48 h at 60 °C and passed through a 4 mm mesh. From the dried sample, we measured soil pH potentiometrically in 0.01 M CaCl2 (soil:solution ratio=1:2; 30 minutes equilibration time). Total and organic carbon content were measured on fine-ground samples (≤ 0.5 mm) by dry combustion using a CN analyzer NC 2500 (CE Instruments, Wigan, United Kingdom). Inorganic carbon of samples with a pH > 6.5 was removed with acid vapor prior to analysis of organic carbon (Walthert et al. 2010). We calculated total soil carbon (C) storage after correcting its content for soil depth, stone content and density of fine earth (see below). Exchangeable cations were determined on another 5 g dry soil sample with 50 mL unbuffered 1 M NH4Cl solution (soil:solution ratio=1:10, end-over-end shaker for 1.5 hours) and measured by an ICP-OES (Optima 7300 DV, Perkin-Elmer, Waltham, Massachusetts, USA). Thereafter, cation exchange capacity (CEC) was calculated as the sum of exchangeable cations and protons (and expressed as mmolc per 1 kg soil) and used to describe nutrient retention capacity in our plots. Concentrations of exchangeable protons were calculated as the difference between total and Al-induced exchangeable acidity as determined by the KCl-method (Thomas 1982).

Ammonium (NH4+) and nitrate (NO3−) were extracted from a 20 g fresh subsample with 80 mL 1M KCl for 1.5 hours on an end-over-end shaker and filtered through ashless folded filter paper (DF 5895 150, ALBET LabScience, Hahnemühle FineArt GmbH, Dassel, Germany). NH4+ concentrations were determined colorimetrically by automated flow injection analysis (FIAS 300, Perkin-Elmer, Waltham, Massachusetts, USA). NO3− concentrations were measured colorimetrically according to Norman and Stucki (1981). Potential soil net nitrogen (N) mineralization was assessed during an 8-week incubation period under controlled moisture (60% of field capacity), temperature (20 °C) and light conditions (dark) in the laboratory. We weighed duplicate samples of fresh soil equivalent to 8 g dry soil (24 h at 104 °C) into 50 mL Falcon tubes. Soil samples were extracted for NH4+ and NO3− at the beginning and after eight weeks as described above. Soil net N mineralization was calculated as the difference between the inorganic nitrogen (NH4+ and NO3−) before and after the incubation (Hart et al. 1994), corrected for the total incubation time and represented per day values expressed as mg N kg-1 soil d-1.

To assess soil physical properties, we randomly collected one undisturbed soil core per 4 m2 subplot (5 cm diameter, 12 cm depth) in a steel cylinder that fit into the slide hammer (AMS Samplers, American Falls, Idaho, USA). The cylinder was capped in the field to avoid disturbance. We then measured field capacity in the laboratory. For this purpose, the cylinder and soil therein were saturated in a water bath and drained on a sand/silt-bed with a suction corresponding to 60 cm hydrostatic head. The moist soil was dried at 105 °C to constant weight. Field capacity was calculated by dividing the mass of water by the total mass of wet soil contained at 60 cm hydrostatic head and used to describe water holding capacity. Thereafter, samples were passed through a 4 mm mesh. Fine-earth and skeleton fractions were weighed separately to assess bulk soil density (fine-earth plus skeleton), density of fine earth, and proportion of skeleton. Particle density was determined with the pycnometer method (Blake and Hartge 1986), and total porosity and proportion of fine pores were calculated (Danielson and Sutherland 1986). Clay, silt, and sand contents were quantified with the sediment method (Gee and Bauder 1986).

Surface and soil temperature (12 cm depth, water-resistant digital pocket thermometer; IP65, H-B Instrument, Trappe, Pennsylvania, USA) as well as volumetric soil moisture content (12 cm depth, time domain reflectometry; Field-Scout TDR 300, Spectrum Technologies, Aurora, Illinois, USA) were measured at five random locations within the 4 m2 subplots every month from June to September. We calculated the standard deviation of each temperature and moisture measure over four months to describe seasonal variations. Slope inclination was determined at plot-level via GPS measurements (GPS 1200, Leica Geosystem, Heerbrugg, Switzerland) and categorized into slope gradient classes according to FAO standards (1990). Thickness of the topsoil horizon (equivalent to Ah or Aa horizon) was determined at one soil monolith (30 x 30 x 30 cm3) per 4 m2 subplot in cm and rounded to next integer.

 References

Adamczyk, M., F. Hagedorn, S. Wipf, J. Donhauser, P. Vittoz, C. Rixen, A. Frossard, J. Theurillat, and B. Frey. 2019. The soil microbiome of GLORIA mountain summits in the Swiss Alps. Frontiers in Microbiology 10:1080-1101.

Blake, G.R., and K. H. Hartge. 1986. Particle Density. Pages 377-382 in A. Klute, editor. Methods of soil analysis: Part 1—Physical and mineralogical methods. Soil Science Society of America (SSSA) Inc., Madison.

Bongers, T. 1988. De nematoden van Nederland. Stichting Uitgeverij van de Koniklijke Nederlandse Natuurhistorische Verenigung (KNNV), Utrecht.

Bongers, T. 1990. The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia 83:14-19.

Bouché, M. B. 1977. Strategies lombriciennes. Ecological Bulletins 25:122-132.

Christian, E., and A. Zicsi. 1999. Ein synoptischer Bestimmungsschlüssel der Regenwürmer Österreichs (Oligochaeta: Lumbricidae). Die Bodenkultur 50:121-131.

Danielson, R. E., and P. L. Sutherland. 1986. Porosity. Pages 443-461 in A. Klute, editor. Methods of soil analysis: Part 1—Physical and mineralogical methods. Soil Science Society of America (SSSA) Inc., Madison.

Delarze, R., Y. Gonseth, S. Eggenberg, and M. Vust. 2015. Lebensräume der Schweiz: Ökologie ‐ Gefährdung ‐ Kennarten, Ott Verlag, Bern.

Edgar, R. C. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460–2461.

Edgar, R. C. 2013. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nature Methods 10:996–998.

FAO. 1990. Guidelines for soil description, third ed. Land and Water Development Division at the Food and Agriculture Organization of the United Nations (FAO), Rome.

Frey, B., T. Rime, M. Phillips, B. Stierli, I. Hajdas, F. Widmer, and M. Hartmann. 2016. Microbial diversity in European alpine permafrost and active layers. FEMS Microbiology Ecology 92:fiw018.

Gee, G.W., and J. W. Bauder. 1986. Particle-size analysis. Pages 383-411 in A. Klute, editor. Methods of soil analysis: Part 1—Physical and mineralogical methods. Soil Science Society of America (SSSA) Inc., Madison.

Hart, S. C, J. M. Stark, E. A. Davidson, and M. K. Firestone. 1994. Nitrogen mineralization, immobilization, and nitrification. Pages 985-1016 in R. W. Weaver, S. Angle, P. Bottomley, D. Bezdicek, S. Smith, A. Tabatabai, and A. Wollum, editors. Methods of soil analysis: Part 2—Microbiological and biochemical properties. Soil Science Society of America (SSSA) Inc., Madison.

Lauber, K., Wagner, G., 1996. Flora Helvetica. Flora der Schweiz. Haupt Verlag, Bern.

MeteoSchweiz, 2018. Klimabulletin Jahr 2017. MeteoSchweiz, Zürich.

Meyer, S. T., C. Koch, and W. W. Weisser. 2015. Towards a standardized rapid ecosystem function assessment (REFA). Trends in Ecology and Evolution 30:390-397.

Neff, F., M. C. Resch, A. Marty, J. Rolley, M. Schütz, A. C. Risch, and M. M. Gossner. 2020. Long-term restoration success of insect herbivore communities in semi-natural grasslands – a functional approach. Ecological Applications 0:e02133

Nguyen, N.H., Z. W. Song, S. T. Bates, S. Branco, L. Tedersoo, J. Menke, J. S. Schilling, and P. G. Kennedy. 2016. FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild. Fungal Ecology 20:241–248.

Nilsson, R. H., K.-H. Larsson, A. F. S. Taylor, J. Bengtsson-Palme, T. S. Jeppesen, D. Schigel, P. G. Kennedy, K. Picard, F. O. Glöckner, L. Tedersoo, I. Saar, U. Kõljalg, and K. Abarenkov. 2018. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research 47:259–264.

Norman, R. J., and J. W. Stucki. 1981. The Determination of Nitrate and Nitrite in Soil Extracts by Ultraviolet Spectrophotometry. Soil Science Society of America Journal 45:347-353.

Oostenbrink, M. 1960. Estimating nematode populations by some selected methods. Pages 81-101 in J. J. Sasser, and W. R. Jenkins, editors. Nematology. Univ. of North Carolina Press, Chapel Hill.

Quast, C., E. Pruesse, P. Yilmaz, J. Gerken, T. Schweer, P. Yarza, J. Peplies, and F. O. Glöckner. 2013. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research 41:590-596.

Resch, M. C., M. Schütz, U. Graf, R. Wagenaar, W.H. van der Putten, and A. C. Risch. 2019. Does topsoil removal in grassland restoration benefit both soil nematode and plant communities? Journal of Applied Ecology 56:1782-1793.

Schuldt, A., A. Ebeling, M. Kunz, M. Staab, C. Guimarães-Steinicke, D. Bachmann, N. Buchmann, W. Durka, A. Fichtner, F. Fornoff, W. Härdtle, L. R. Hertzog, A-N. Klein, C. Roscher, J. Schaller, von G. Oheimb, A. Weigelt, W. Weisser, C.Wirth, J. Zhang, H. Bruelheide, and N. Eisenhauer. 2019. Multiple plant diversity components drive consumer communities across ecosystems. Nature Communications 10:1460.

Tedersoo, L., M. Bahram, S. Põlme, U. Kõljalg, N. S. Yorou, R. Wijesundera, L. Villarreal Ruiz, A. M. Vasco-Palacios, P. Q. Thu, A. Suija, M. E. Smith, C. Sharp, E. Saluveer, A. Saitta, M. Rosas, T. Riit, D. Ratkowsky, K. Pritsch, K. Põldmaa, M. Piepenbring, C. Phosri, M. Peterson, K. Parts, K. Pärtel, E. Otsing, E. Nouhra, A. L. Njouonkou, R. H. Nilsson, L. N. Morgado, J. Mayor, T. W. May, L. Majuakim, D. J. Lodge, S. See Lee, K.-H. Larsson, P. Kohout, K. Hosaka, I. Hiiesalu, T. W. Henkel, H. Harend, L.-D. Guo, A. Greslebin, G. Grelet, J. Geml, G. Gates, W. Dunstan, C. Dunk, R. Frenkhan, L. Dearnaley, A. De Kesel, T. Dang, X. Chen, F. Buegger, F. Q. Brearley, G. Bonito, S. Anslan, S. Abell, and K. Abarenkov. 2014. Global diversity and geography of soil fungi. Science 346:1256688.

Thomas, G.W. 1982. Exchangeable cations. Pages 159-165 in A. L. Page, R. H. Miller, and D. R. Keeney, editors. Methods of Soil Analysis: Part 2—Chemical and microbiological properties. Soil Science Society of America (SSSA) Inc., Madison.

Walthert, L., U. Graf, A. Kammer, J. Luster, D. Pezzotta, S. Zimmermann, and F. Hagedorn. 2010. Determination of organic and inorganic carbon, δ13C, and nitrogen in soils containing carbonates after acid fumigation with HCl. Journal of Plant Nutrition and Soil Sciences 173:207-216.

Yeates, G. W., T. Bongers, R. G. M. de Goede, D. W. Freckman, and S. S. Georgieva. 1993. Feeding habits in soil nematode families and genera – an outline for soil ecologists. Journal of Nematology 25:315-331.

bacteria

display_name: bacteria

biodiversity

display_name: biodiversity

ecosystem-multifunctionality

display_name: ecosystem-multifunctionality

fungi

display_name: fungi

grassland

display_name: grassland

mineralization

display_name: mineralization

nematodes

display_name: nematodes

plants

display_name: plants

restoration

display_name: restoration

soil-biodiversity

display_name: soil-biodiversity

educ

en: Education, culture and sport

en: Restoring grassland multifunctionality


ceilometer-klosters

title_for_slug: ceilometer-klosters

en: klosters raclets vertical-visibility ceilometer cloud-base-height

en: Ceilometer data Klosters

en: Ceilometer installed at Klosters measuring cloud base height, cloud cover and backscatter profile. The time resolution is 30 seconds, with time given in number of days from January 0, 0000, UTC. More information on the variables in the manufacturer manual.

en: Cloud base height (m) and vertical visibility (m) were measured with the VAISALA Ceilometer CL31 in Klosters (LON: 9.880413, LAT: 46.869019). The CL31 is an instrument with constant reliability for all weather conditions and simultaneous detection of three cloud layers in heights up to 7.6 km.

ceilometer

display_name: ceilometer

cloud-base-height

display_name: cloud-base-height

klosters

display_name: klosters

vertical-visibility

display_name: vertical-visibility

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Ceilometer Klosters


maintainer: Benjamin Reuter

en: snow avalanche-danger snowpack avalanche crocus avalanche-problem-type snow-cover-modeling snow-instability avalanche-activity weissfluhjoch

en: 1999-2017 Avalanche problem types from Crocus

en:
Avalanche problem types were derived from snow cover simulations with the model Crocus at the Weissfluhjoch study plot, Davos, CH.
The data cover the winter seasons between 1999-2017 and include the simulated annual frequencies of new snow, wind slab, persistent weak layer, aging-persistent weak layer and wet snow problem types.
The data are presented in Figure 8 in Reuter et al. (2021).

en: 2015-2016 Avalanche problem types from SNOWPACK

en:
Avalanche problem types were derived from a snow cover simulation with the model SNOWAPCK for the winter season 2015-2016 at the Weissfluhjoch study plot, Davos, CH.
The data cover the period 01.01.2016-30.04.2016. The binary indicator (0,1) tells whether an avalanche problem type was identified in the snow cover simulation (1) or not (0).
The data are presented in Figure 7 in Reuter et al. (2021).

en: 2015-2016 Avalanche problem types from Crocus

en:
Avalanche problem types were derived from a snow cover simulation with the model Crocus for the winter season 2015-2016 at the Weissfluhjoch study plot, Davos, CH.
The data cover the period 01.01.2016-30.04.2016. The binary indicator (0,1) tells whether an avalanche problem type was identified in the snow cover simulation (1) or not (0).
The data are presented in Figure 7 in Reuter et al. (2021).

en: 2015-2016 Seismic avalanche acitivity catalogue

en:
Avalanches were indentified in seismic data recorded by two seismic arrays, one deployed at Wannengrat (2,500 m) and another one deployed in the Dischma valley (2,000 m).
The data cover the period from 01.01.2016 - 30.04.2016 and are presented in Figure 7 in Reuter et al. (2021).

en: 1999-2017 Avalanche problem types from SNOWPACK

en:
Avalanche problem types were derived from snow cover simulations with the model SNOWPACK at the Weissfluhjoch study plot, Davos, CH.
The data cover the winter seasons between 1999-2017 and include the simulated annual frequencies of new snow, wind slab, persistent weak layer, aging-persistent weak layer and wet snow problem types.
The data are shown in Figure 8 in Reuter et al. (2021).

en:
Avalanche problem types were derived from snow cover simulations with the models Crocus and SNOWPACK at the Weissfluhjoch study plot, Davos, CH. The data include annual frequencies of avalanche problem types for the seasons 1999-2017 and daily presence of avalanche problem types for the period 01.01.2016 - 30.04.2016.
Avalanche activity was derived from two seismic sensor arrays deployed no further than 15 km from Weissfluhjoch, Davos, CH. The data cover the period 01.01.2016 - 30.04.2016.

avalanche

display_name: avalanche

avalanche-activity

display_name: avalanche-activity

avalanche-danger

display_name: avalanche-danger

avalanche-problem-type

display_name: avalanche-problem-type

crocus

display_name: crocus

snow

display_name: snow

snow-cover-modeling

display_name: snow-cover-modeling

snow-instability

display_name: snow-instability

snowpack

display_name: snowpack

weissfluhjoch

display_name: weissfluhjoch

en: Simulated avalanche problem types and seismic avalanche activity around Weissfluhjoch


en: marine edna teleo mediterraneaen marseille fish-composition

en: Data access

en: Please use cyberduck to download for the moment

en:
Description: Fish environmental DNA data set collected in 2023 in the Calanques National Park
The eDNA samples were collected in 2023 in two locations (Moyades, M−FPA and “Impérial du large”, I-LPA), during the winter (January- February) season, with the sampling dates depending on the weather conditions. For the M−FPA, samples were collected between Moyades island and Riou island, while for the I-LPA, they were collected on the south side of the “Impérial du large” island. To account for the existing bathymetry, in the M−FPA the samples were taken at two sampling sites with depths of 20 and 40 m, while in the I-LPA they were taken at two sites with depths of 20 and 80 m.
At each site, in-situ filtration of seawater was performed using a double-head submersible pump (Subspace, Geneva, Switzerland; nominal flow of ca. 1 L/min) strapped to an underwater scooter with 2 VigiDNA 0.20 µm filtration capsules (SPYGEN, le Bourget du Lac, France), along with disposable sterile tubing. The samples were collected along two horizontal transects (up to 400 m in length) during each closed-circuit rebreather dive, enabling the filtration of a water volume of 15 L/filter per depth, as close as possible to the substrate. Two filter replicates were collected by two divers at each sampling site, except in two cases where bad weather conditions or logistical issues meant that only one replicate was sampled.
After the filtration, the remaining seawater was emptied from the capsule back on the boat and replaced by a 80 mL CL1 conservation buffer (SPYGEN, le Bourget du Lac, France). To prevent any contamination, a strict protocol was followed during the entire process, requiring disposable gloves and single-use filtration equipment. Finally, the samples were stored at room temperature. We followed a strict contamination control protocol in both field and laboratory stages. Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

edna

display_name: edna

fish-composition

display_name: fish-composition

marine

display_name: marine

marseille

display_name: marseille

mediterraneaen

display_name: mediterraneaen

teleo

display_name: teleo

educ

en: Education, culture and sport

en: Environmental DNA Marine France Calanques 2023


maintainer: Francesco Comola

en: saltation wind cohesion sand snow sediment

en: Output of the model simulations

en: Model results on granular splash and saltation process of sand and snow particles

en:
The wind-driven saltation of sand and snow shapes dunes and ripples, generates dust emission, and erodes the surface of the Antarctic ice sheet. Here, we use a model based on the discrete element method to simulate grain-flow interactions and study the effect of particle cohesion on saltation dynamics.

The data contains the model output of granular splash simulations and saltation simulations. Granular splash, the main particle entrainment process in saltation, occurs upon impact of saltating particles with the granular bed. We performed Monte Carlo simulations of granular splash for loose sand grains and for cohesive ice grains. The analysis indicate that different values of cohesion have significant effects not on the number of splashed grains, on the ejection velocity, and the rebound velocity.

In our saltation simulations, we trigger particle movement with a single splash event at the inlet section section and let the system evolve until steady state. Our results show that saltation over cohesive surfaces is difficult to initiate but easy to sustain at low wind speed. The occurrence of transport thus depends on the history of the wind speed, a phenomenon known as hysteresis. We also show that saltation over cohesive surfaces presents higher mass fluxes but requires longer distances to saturate, which increases the size of the smallest stable surface ripples. Our model results have implications for large-scale aeolian processes on Earth and Titan, where sand grains are thought to be very cohesive.

cohesion

display_name: cohesion

saltation

display_name: saltation

sand

display_name: sand

sediment

display_name: sediment

wind

display_name: wind

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Saltation of cohesive granular materials


en: madagascar geology landscape-evolution endemism flora

en: Escarpment evolution drives the diversification of the Madagascar flora

en: This upload contains the data (species checklist, species range maps, time-calibrated phylogenies, topographic change, etc.) generated, analyzed, and presented in the paper .

en: Data v1.0

en: Although much of the endemic biodiversity of Madagascar can be attributed to its isolation as an island in the Indian Ocean, the high rates of speciation throughout its geologic history suggest an influence of local-scale landscape dynamics. The topographic evolution of Madagascar is dominated by the formation of high-relief continental rift escarpment and we argue that the erosion and landward retreat of this topography creates habitat heterogeneity that has served as a speciation pump for the island. The highest plant richness is found along the escarpment and is characterized by steady diversification rates over the last 45 Ma. Modeled landscape evolution by escarpment retreat demonstrates opportunities for allopatric speciation by transient habitat fragmentation through multiple mechanisms, including catchment expansion, isolation of highland remnants and formation of topographic and river barriers The segregation of floral phylogenetic turnover parallel to the escarpment is consistent with these mechanisms and indicates the importance of erosion-driven landscape dynamics on speciation.

endemism

display_name: endemism

flora

display_name: flora

geology

display_name: geology

landscape-evolution

display_name: landscape-evolution

madagascar

display_name: madagascar


disdrometer-data-laret

maintainer: Daniel Wolfensberger

title_for_slug: disdrometer-data-laret

en: disdrometer hydrometeors precipitation visibility raclets

en: Disdrometer Data Laret

en: The zip folder contains one netCDF file per day for Laret from February 7 to March 29 2019 with a temporal resolution of 30 seconds (time in UTC). The naming convention for the files is Laret_YYYYMMDD.nc and the files include the following: characteristics of hydrometeors (e.g. diameter, fall velocity, amount per diameter class,...), precipitation rate, radar reflectivity, visibility range, weather codes and instrument performance.

en:
A laser optical disdrometer (Parsivel² , OTT Hydromet) was used to measure hydrometeors by extinction when passing a laser beam. The instrument can classify eight different kinds of precipitation, including rain, hail, snow, drizzle, and hybrid forms.
The dataset contains information on precipitation amount and type for the period of February 7 to March 29 2019 in Laret.

disdrometer

display_name: disdrometer

hydrometeors

display_name: hydrometeors

precipitation

display_name: precipitation

raclets

display_name: raclets

visibility

display_name: visibility