en: water-supply water-scarcity water-demand climate-change reservoirs

en: Shapefile of 307 catchments in Switzerland

en: Shapefile of 307 catchments for which estimates of water supply, demand, and reservoir volumes are provided. The OBJECTID entry corresponds to the catchment ID which is used as a reference in the other datasets provided.

en: Reservoir volumes

en: Reservoir volume for the 307 medium-sized catchments for different storage categories: natural lakes, artificial reservoirs, reservoirs for artificial snow production, drinking water reservoirs, and usable volumes of natural lakes. Unit: Mio m³. One column per catchment (see shapefile).

en: Water supply

en: Simulated discharge series for a reference period 1981-2010 and till the end of the century. Data are provided for 39 climate model chains and a control run based on the observed meteorology. Data are provided at daily resolution (mm/d).

en: Water demand (deprecated)

en:
Warning: please use the corrected version 2, since this file contains errors for certain categories such as Livestock, Industry or Houshold.

Water demand estimates for the 307 medium-sized catchments for different categories for current and future conditions. One text file is provided per demand category. One column corresponds to one catchment (IDs compare to shapefile), The data are provided at monthly resolution in mm/d and can be converted to volumes by using the catchment area. E.g.
Q[mm/d] * catchment area [m²] /1000 = Q[m³/d]
or to obtain discharge in m³/s
Q[mm/d] * catchment area [m²]/1000/24/3600 = Q [m³/s].
Future irrigation and hydropower water demand are provided per climate model chain.

en: Water demand version 2 (corrected version)

en:
The dataset Hydro-CH2018 reservoirs provides estimates of current and future water supply, water demand, and storage volumes for 307 medium-sized catchments in Switzerland.
Water supply for current (1981-2010) and future (2070-2099) climate conditions was simulated using the hydrological model PREVAH. For modeling current water supply, observed meteorological time series were used as input, while simulated meteorological time series derived from 39 model chains of the CH2018 initiative were used as an input for simulating future climate conditions.

Water demand was estimated for six categories:

- 1) Drinking water (households and tourism),
- 2) industry (second and third sector),
- 3) artificial snow production,
- 4) agriculture (irrigation and livestock feeding),
- 5) ecology (residual flows), and
- 6) hydropower.

Future estimates consider changes in demand related to population growth and changes in the hydrological conditions.
Storage volumes are provided for natural lakes (storage capacities and usable volumes), artificial reservoirs, reservoirs for artificial snow production, and drinking reservoirs.

A detailed description of the simulation and estimation procedures can be found in

*  Brunner, M.I., Björnsen Gurung, A., Zappa, M., Zekollari, H., Farinotti, D., Stähli, M., 2019. Present and future water scarcity in Switzerland: Potential for alleviation through reservoirs and lakes. Sci. Total Environ. 666, 1033–1047. https://doi.org/10.1016/j.scitotenv.2019.02.169.

This dataset contains the following information:

1.	Shapefile with the 307 medium-sized Swiss catchments.
2.   Textfiles with the water supply simulations for the control run and the 39 climate model chains (one file per chain) at daily resolution for the 307 catchments.
3.	Textfiles with the current and future demand estimates per category at monthly resolution for the 307 catchments.
4.	Textfiles with the storage volumes per category and catchment.

climate-change

display_name: climate-change

reservoirs

display_name: reservoirs

water-demand

display_name: water-demand

water-scarcity

display_name: water-scarcity

water-supply

display_name: water-supply

en: Hydro-CH2018 reservoirs


maintainer: EnviDat Support

en: precipitation-amount air-temperature cmip5 climate-change orographic-precipitation

state: active

type: dataset

en: Data Access

format: SERVICE

en:
Predicting future climatic conditions at high spatial resolution is essential for many applications in science. Here we present data for monthly time series of precipitation and minimum and maximum temperature for four downscaled global circulation models. We used model output statistics in combination with mechanistic downscaling (the CHELSA algorithm) to calculate mean monthly maximum and minimum temperatures, as well as monthly precipitation sums at ~5km spatial resolution globally for the years 1850-2100. We validated the performance of the downscaling algorithm by comparing model output with observed climates for the years 1950-2069.

CHELSA_cmip5_ts is licensed under a Creative Commons Attribution 2.0 Generic (CC BY 2.0) license.

air-temperature

display_name: air-temperature

orographic-precipitation

display_name: orographic-precipitation

precipitation-amount

display_name: precipitation-amount

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: High resolution monthly precipitation and temperature timeseries for the period 2006-2100


maintainer: James W. Kirchner

en: streamflow catchment deuterium stable-water-isotopes precipitation chloride plynlimon tracer

en: Data Set Documentation

media_type: application/pdf

en: This file contains a documentation of the data sets, including references to other helpful documentations.

format: PDF

mimetype: application/pdf

en: 7-hourly stable water istopes

media_type: text/plain

en: Data set of 7-hourly stable water isotope data measured at Carreg Wen (precipitation) and Upper Hafren (streamflow).

format: TXT

mimetype: text/plain

en: Weekly stable water isotopes

en: Data set of weekly stable water isotope data collected at Carreg Wen (precipitation) and Lower Hafren and Tanllwyth (streamflow).

en: The data base contains timeseries of stable water isotopes in precipitation and streamflow at Plynlimon, Wales, UK. One data set contains weekly stable water isotope data from the Lower Hafren and Tanllwyth catchments, and the other data set contains 7-hourly stable water isotope data from Upper Hafren. Both data sets also include chloride concentrations in precipitation and streamflow.

catchment

display_name: catchment

chloride

display_name: chloride

deuterium

display_name: deuterium

plynlimon

display_name: plynlimon

precipitation

display_name: precipitation

stable-water-isotopes

display_name: stable-water-isotopes

streamflow

display_name: streamflow

tracer

display_name: tracer

en: Stable water isotopes in precipitation and streamflow at Plynlimon, Wales, UK


en: spruce picea-abies forest cryogenic-extraction soil-water critical-zone xylem-water beech ecohydrology hydrogen-isotopes europe oxygen-isotopes water-isotopes isotopes fagus-sylvatica hydrology

media_type: text/csv

en: Dataset containing the metadata of the sampling sites, including site-, soil-, tree-specific information.

format: CSV

en: Dataset containing information about sample weights, cryogenic water extraction and the actual hydrogen and oxygen isotope data of the study.

media_type: application/zip

en: All canopy pictures in one ZIP file.

format: ZIP

en: WATSON_Canopy_Pictures (individual JPG files)

en: All canopy pictures as individual files.

en: Dataset containing the information on the canopy cover.

en: Here, we present a comprehensive isotope dataset of soil and stem xylem water collected during two pan-European sampling campaigns in spring and summer 2023. The dataset includes samples from 40 forest sites featuring beech (Fagus sylvatica), spruce (Picea abies), or mixed beech-spruce forests, and is supplemented with detailed site-specific, soil-specific, and tree-specific metadata. Samples and metadata were collected by various researchers across Europe following a standardized protocol. Soil samples were taken at up to five depths (ranging from 0 to 90 cm), and stem xylem samples were collected from three beech and/or spruce trees at each site. All samples were sent to a single laboratory for analysis, where water was extracted using cryogenic vacuum distillation and analyzed with an isotope laser spectrometer. Additionally, a subset of the samples underwent analysis with an isotope ratio mass spectrometer. The complete description of the data can be found in a publication in Earth System Science Data (in review).

beech

display_name: beech

critical-zone

display_name: critical-zone

cryogenic-extraction

display_name: cryogenic-extraction

ecohydrology

display_name: ecohydrology

europe

display_name: europe

fagus-sylvatica

display_name: fagus-sylvatica

forest

display_name: forest

hydrogen-isotopes

display_name: hydrogen-isotopes

hydrology

display_name: hydrology

isotopes

display_name: isotopes

oxygen-isotopes

display_name: oxygen-isotopes

picea-abies

display_name: picea-abies

soil-water

display_name: soil-water

spruce

display_name: spruce

water-isotopes

display_name: water-isotopes

xylem-water

display_name: xylem-water

en: Soil and stem xylem water isotope data from two pan-European sampling campaigns


maintainer: Sven-Eric Hopf

en: iap forest ash-dieback monitoring fraxinus

en: Monitoring of ash trees as part of the Intercantonal Forest Observation Programme

en: Packgroun information on data for the publication: Spread and Severity of Ash Dieback in Switzerland – Tree Characteristics and Landscape Features Explain Varying Mortality Probability, (Klesse et al. 2021, Front. For. Glob. Change 4:645920., doi: 10.3389/ffgc.2021.645920)

en:
In 2013, the Institute for Applied Plant Biology (IAP) started a monitoring programme to study the development and the spatial variation of the ash dieback disease with the aim to find some partially resistant European ash trees (Fraxinus excelsior).
We collaborate as co-authors for the publication: Spread and Severity of Ash Dieback in Switzerland - Tree Characteristics and Landscape Features Explain Varying Mortality Probability (Klesse et al. 2021 in frontiers)

ash-dieback

display_name: ash-dieback

fraxinus

display_name: fraxinus

iap

display_name: iap

monitoring

display_name: monitoring

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: imis snow-water-equivalent snow-temperatures snow-height weissfluhjoch enet

en: DATA ACCESS

en:
Station WFJ2: merged IMIS + ENET datasets. Provides parameters height of snow, snow surface temperatures and snow temps at 0, 1, 1.5 m above ground surface. Supporting meteo data are also contained in this dataset.

fields      = timestamp TA RH TSG TSS HS VW DW VW_MAX OSWR PSUM VW_DRIFT DW_DRIFT TS1 TS2 TS3 HTS1 HTS2 HTS3

en: This dataset provides HS, TSS and TS50, TS100, TS150 at the station WFJ2 situated on the Weisfluhjoch research site (2536 m asl). It has been created from merging ENET and IMIS datsets to form a continuous timeseries from 1992- present. ENET is at 1 h resolution whereas IMIS is 30 min. This is a level 2 dataset as defined [here](http://models.slf.ch/p/dataset-processing/).

enet

display_name: enet

imis

display_name: imis

snow-height

display_name: snow-height

snow-temperatures

display_name: snow-temperatures

snow-water-equivalent

display_name: snow-water-equivalent

weissfluhjoch

display_name: weissfluhjoch

en: WFJ2: Snow measurements from the Weissfluhjoch research site, Davos


en: network-analysis habitat-fragmentation metaweb trophich trophic-networks robustness food-webs

en:
This resource is broken down into two sections: 01 simulations and 02 analyses
In the 01 simulations section, the program which run the simulations for the paper is provided. It is prepared such that it can be easily run on a cluster. Please note that the results folder is empty, as they would have included 108,000 csv files. Instead, the summarised version is available in the next section.
In the 02 analyses section, all code needed to recreate the analyses and figures from the paper are provided.
Please refer to the separate README.txt files for each section for further information.

en:
This dataset contains all processed data, simulation outputs, and R/Python scripts used to assess the robustness of regional multi-habitat food webs in Switzerland under various non-random species extinction scenarios. It accompanies the manuscript submitted to Communications Biology, and available as a preprint here:
Reji Chacko, M, Albouy, C., Altermatt, F., et al. Decreases in the robustness of regional food webs to sequential species extinctions following habitat loss, 04 December 2024, PREPRINT (Version 1) available at Research Square [https://doi.org/10.21203/rs.3.rs-5225132/v1]
Please note that the most up-to-date version of the simulations code is available here: https://github.com/mrejichacko/casCHades

food-webs

display_name: food-webs

habitat-fragmentation

display_name: habitat-fragmentation

metaweb

display_name: metaweb

network-analysis

display_name: network-analysis

robustness

display_name: robustness

trophic-networks

display_name: trophic-networks

trophich

display_name: trophich

en: Simulation data and analyses of regional food web robustness under habitat loss


en: urban-ecology insects urban-biodiversity birds biodiversity fungal-pathogen fungi urban

en: Data tables including individual bird data with biometry, prey species from faecal samples, and fungi species from swab samples.

format: XLS

en:
We captured birds in urban parks and peri-urban forests in the cities of Lugano and Zurich. The urban sites were located in an urban forest (Lugano) and in a cemetery (Zurich), and the bird assemblages were comparable with those of the surrounding forests.
We captured individual birds during sessions lasting multiple days using mist-nets, concentrating the activities within 3-4 hours after sunrise and before sunset. We extracted birds from nets using single-use nitrile gloves and gently wiped their body parts with a dry foam swab MW940 (Medical Wire & Equipment), which was then placed in a screw-capped tube (2 ml), which was previously filled with 1 ml ethanol puriss. (Sigma-Aldrich) under sterile conditions.Then, we marked each bird with an alphanumeric leg band, identified the species, determined the sex and age whenever possible, measured for relevant biometrics (e.g. wing chord), the amount of body fat and pectoral muscle (i.e. body condition), and weighed.
Afterwards, we placed each bird in a disposable paper bag within a cotton bag that ensured respiration and left it for few minutes in a safe and calm place to allow for defecation and the collection of faecal samples. The faecal sample was collected from insectivorous and omnivorous birds, and few granivorous birds that are known to occasionally eat invertebrates, such as the house sparrow Passer domesticus.
After releasing the bird, we stored the faecal sample in a screw-capped tube (2 ml), which was previously filled with 1 ml ethanol puriss. (Sigma-Aldrich) under sterile conditions. We wore single-use nitrile gloves and used sterile toothpicks to collect solid samples. The tubes were initially stored in the refrigerator during the field campaign and no later than seven days after collection at -20°C until prepared for DNA extraction.
DNA extraction and library preparation was performed at WSL Phytopathology facilites, Sequencing was performed at Lausanne Genomic Technologies Facility (University of Lausanne; [https://wp.unil.ch/gtf/](https://wp.unil.ch/gtf/)) on an AVITI benchtop sequencing system (Element Biosciences). Bioinformatics was performed at the Genetic Diversity Center (ETH Zurich) using a custom pipeline.

biodiversity

display_name: biodiversity

birds

display_name: birds

fungal-pathogen

display_name: fungal-pathogen

fungi

display_name: fungi

insects

display_name: insects

urban

display_name: urban

urban-biodiversity

display_name: urban-biodiversity

urban-ecology

display_name: urban-ecology

en: Urban bird capture data with prey species and fungal community


irkis-soil-moisture-measurements-davos

maintainer: Nander Wever

title_for_slug: irkis-soil-moisture-measurements-davos

en: meteorological-measurements soil-moisture dischma-catchment davos meteo-station

en: IRKIS soil moisture data (zip file)

en: Compressed archive (zip) containing soil moisture measurements, as well as meteorological measurements and interpolated meteorological time series.

en:
Meteorological and soil moisture measurements from soil moisture stations installed from October 2010 - October 2013 in the area surrounding Davos, in particular in the Dischma catchment.

There are in total 7 stations: 1202, 1203, 1204, 1205, 222, 333 and SLF2. For each of the stations, there is a:

* vwc_[stn].smet: containing the soil moisture measurements

* station_[stn].smet: in-situ measured meteorlogical parameters. Note, the quality of these measurements for stations 1202, 1203, 1204 and 1205 is very low, with data gaps. Use this data with care. For stations 222, 333 and SLF2, data quality is high and only the default cautiousness should be applied.

* interpolatedmeteo_[stn].smet contains per stations a dataset derived by interpolating from several stations in the Davos area to the stations location. This dataset was generated from the output of the Alpine3D model, of which simulations are presented in the Wever et al. (2017) manuscript.

At the soil moisture measurement sites, Decagon 10HS sensors were installed, at 10, 30, 50, 80 and 120 cm depth. Per depth 2 sensors were installed, labelled A and B in the datafiles. Note that at stations 1203, 1204 and 1205, sensors were only installed at 10, 30 and 50 cm depth.

The files follow the SMET format: https://models.slf.ch/docserver/meteoio/SMET_specifications.pdf and metadata for the stations can be found in the header of the smet files.

Please cite the Wever et al. (2017) reference when using this data in publications.

For a more detailed description, please refer to: Wever, N., Comola, F., Bavay, M., and Lehning, M.: Simulating the influence of snow surface processes on soil moisture dynamics and streamflow generation in an alpine catchment, Hydrol. Earth Syst. Sci., 21, 4053-4071, https://doi.org/10.5194/hess-21-4053-2017, 2017.

davos

display_name: davos

dischma-catchment

display_name: dischma-catchment

meteo-station

display_name: meteo-station

meteorological-measurements

display_name: meteorological-measurements

soil-moisture

display_name: soil-moisture

en: IRKIS Soil moisture measurements Davos


maintainer: Matthias Bürgi

en: agriculture land-use-modelling scenarios pathways land-change

en: This dataset contains the spatial layers showing future land change pathways in Europe between 2015 and 2050, as simulated by the CLUMondo model according to the Agricultural Futures Framework (AFF) scenarios.

en:
This dataset contains the spatial layers showing future land change pathways in Europe between 2015 and 2050, as simulated by the CLUMondo model and according to the Agricultural Futures Framework (AFF) scenarios.

Three scenarios are included:
- Land for Food and Land for Nature (LFLN)
- Land as Culture (LaC)
- Land for Society (LfS)

agriculture

display_name: agriculture

land-change

display_name: land-change

land-use-modelling

display_name: land-use-modelling

pathways

display_name: pathways

scenarios

display_name: scenarios

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: AFF agricultural land change scenarios in Europe 2015-2050


maintainer: Thorsten Bartels-Rausch

en: snow antartic arctic polar sea-salt-aerosol cryosphere laboratory-study

en: Experimental Results: Uptake coefficients vs. temperature and ozone concentration

en:
* Final Data to Figure 3: Uptake coefficients as a function of temperature at 5E12 molecules per cm3 ozone concentration.
* Final Data to Figure 6: Uptake coefficients at different temperatures as a function of gas- phase ozone concentration.

The average ozone uptake coefficients of the three cycles between the bypass and the flow tube per repeat is taken as the mean uptake coefficient for each experiment. Gamma was corrected for gas phase diffusion limitation following the Cooney–Kim– Davis (CKD) method52 (see supporting material of publication for details).

mimetype: text/csv

en: Experimental results of uptake coefficient vs. temperature and ozone concentration

en:
Data to Figure 3: Measured uptake coefficients as a function of temperature at 5E12 molecules per cm3 ozone concentration.

Data to Figure 6: Measured uptake coefficients at different temperatures as a function of gas- phase ozone concentration.

en: The reaction of ozone with bromide in polar regions results in the formation of reactive bromide species with impacts on ozone budget and the oxidative capacity of the lower atmosphere. Here, we present a data investigating the temperature dependence of bromide oxidation by ozone using a coated wall flow tube reactor coated with an aqueous mixture of citric acid and sodium bromide, a proxy for sea salt aerosol in snow or the free troposphere. Thus study shows the effect of of organic species at relatively mild temperatures between the freezing point and eutectic temperature as typical for Earth's cryosphere.

antartic

display_name: antartic

arctic

display_name: arctic

cryosphere

display_name: cryosphere

laboratory-study

display_name: laboratory-study

polar

display_name: polar

sea-salt-aerosol

display_name: sea-salt-aerosol

snow

display_name: snow

en: Kinetic experiments on the oxidation of bromide by ozone from 289-245 K.


en: meteorological-data first-order-catchment alptal subalpine runoff snow

en: Snow measurements Alptal 1969-2024 EnviDat updated

en: Snow depth, snow density and snow water equivalent have been measured since winter 1968/69 along more than 15 transects distributed across the Alptal valley representing different altitudes, aspects and land use (closed forest and open meadows). Length of the snow courses: 20 to 30 m. The measurement interval has been weekly to monthly. More details about the locations and methods can be found in Stähli, M.; Gustafsson, D., (2006). Long-term investigations of the snow cover in a subalpine semi-forested catchment. Hydrological Processes, 20, 411-428. doi: 10.1002/hyp.6058.

en: Meteorological data Alptal 1968-2024 EnviDat updated

en:
Air temperature, dew point temperature, relative humidity, wind speed, precipitation and global radiation have been measured (since 1981) on a meadow (Erlenhöhe) in the Erlenbach catchment. It is located at 1'220 m a.s.l. with an exposure towards west. In order to assess the spatial variability of precipitation, two additional rain gauges have been running in the Vogelbach and Lümpenenbach catchment, respectively. For the period before 1981, meteorological variables have been extrapolated from the nearby MeteoSwiss station Einsiedeln (ca. 15 km north) to the WSL station Erlenhöhe using a linear correction factor for air temperature, wind speed and precipitation. Snow depth has been recorded automatically since 2003. Snow water equivalent has been calculated using two numerical models: COUP model (Jansson, 2012) and DeltaSnow model (Winkler et al., 2021)
Jansson, P.-E. (2012). COUP model: model use, calibration, and validation.Transactions of the ASABE, 55(4), 1335–1344. Winkler, M., et al. (2021): Snow water equivalents exclusively from snow depths and their temporal changes: the Δsnow model, Hydrol. Earth Syst. Sci., 25, 1165-1187, 10.5194/hess-25-1165-861 2021.

en: Daily meteorological and snow data (1968-2022) Alptal

en:
Air temperature, dew point temperature, relative humidity, wind speed, precipitation and global radiation have been measured (since 1981) on a meadow (Erlenhöhe) in the Erlenbach catchment. It is located at 1'220 m a.s.l. with an exposure towards west. In order to assess the spatial variability of precipiation, two additional rain gauges have been running in the Vogelbach and Lümpenenbach catchment, respectively.
For the period before 1981, meteorological variables have been extrapolated from the nearby MeteoSwiss station Einsiedeln (ca. 15 km north) to the WSL station Erlenhöhe using a linear correction factor for air temperature, wind speed and precipitation.
Snow depth has been recorded automatically since 2003. Snow water equivalent has been calculated using two numerical models: COUP model (Jansson, 2012) and DeltaSnow model (Winkler et al., 2021)

Jansson, P.-E. (2012). COUP model: model use, calibration, and validation.Transactions of the ASABE, 55(4), 1335–1344.
Winkler, M., et al. (2021): Snow water equivalents exclusively from snow depths and their temporal changes: the Δsnow model, Hydrol. Earth Syst. Sci., 25, 1165-1187, 10.5194/hess-25-1165-861 2021.

en: Daily runoff data from three steep torrents in the Alptal (1968-2022)

en: Runoff, water temperature and electrical conductivity have been measured since 1968 at the outlet of three torrential catchments (with an area of approximately 1 km2 each) located in the Alptal valley: Erlenbach, Lümpenenbach and Vogelbach. This data set provides daily mean values; data at 10-min resolution can be provided on request for the period 1984-2022 (contact: alptal@wsl.ch).

en: Runoff daily mean Alptal 1968-2024 EnviDat updated

en: Runoff, water temperature and electrical conductivity have been measured since 1968 at the outlet of three torrential catchments (with an area of approximately 1 km2 each) located in the Alptal valley: Erlenbach, Lümpenenbach and Vogelbach. This data set provides daily mean values; data at 10-min resolution can be provided on request for the period 1984-2024 (contact: alptal@wsl.ch).

en: Manual snow measurements Alptal (1968-2022)

en:
This data set includes 56 years of hydrometeorological measurements from small (first-order) catchments in the pre-alpine valley Alptal. Here we provide daily mean values; values in hourly or 10-min resolution can be provided on demand.
Runoff has been measured at the outlet of three small (first-order) catchments of approximately 1 km2 area: Erlenbach (two independent runoff measurements), Vogelbach and Lümpenenbach. The catchments are similar with regard to geology (Flysch) and soil conditions (clay soils), but differ in forest coverage (20 to 60%). A detailed description of the catchments can be found at https://www.wsl.ch/alptal .
Runoff in these small catchments is typically very dynamic and can temporally carry large amounts of sediment and large wood. Thus, the accuracy of the measurements at very large flow is limited.
Meteorological variables have been measured on a meadow (Erlenhöhe) located in the Erlenbach catchment at 1220 m a.s.l. using a standard meteorological station (incl. ventilated air temperature and heated rain gauges). In addition, precipitation has also been recorded at two other locations (in the Vogelbach and Lümpenenbach catchments).
Snow measurements have been conducted weekly to monthly since 1968 at more than 15 locations (30-m transects) representing different altitudes, aspects and land uses (meadow, forest). In addition, snow depth has been recorded continuously since 2003 at Erlenhöhe, and for this location we also include a simulation of snow depth and SWE (using the numerical models COUP and DeltaSnow) that assimilates the manual weekly snow-course measurements. Details on these snow measurements can be found in Stähli, M. and Gustafsson, D. 2006. Hydrol. Proc., 20, 411-428. doi: 10.1002/hyp.6058.
Further information on the methods and sensors can be found at https://www.wsl.ch/alptal .
A first version of this data set (for the period 1968-2017) was uploaded in June 2018 at the occasion of the 50-year anniversary. This original data set was updated in February 2021 (with data from 2018 and 2019), and this data set was used for a longterm trend analysis, submitted for publication in a special issue of Hydrological Processes. Further updates of the data set (with data from 2020 to 2022) were uploaded in March 2023, February 2024 and March 2025.

alptal

display_name: alptal

first-order-catchment

display_name: first-order-catchment

meteorological-data

display_name: meteorological-data

runoff

display_name: runoff

subalpine

display_name: subalpine

en: Longterm hydrological observatory Alptal (central Switzerland)


maintainer: Virginie Marques

en: environmental-dna marine dna-metabarcoding plankton fish biodiversity fjord

en: Metabarcoding data

en: Raw metabarcoding data for both primers (teleo and 18S) and corresponding file to perform the demultiplexing and primer trimming

en: Code, data and figures

en: Here there are all the data and code to reproduce the figures and analysis presented in the paper, with a README.md file

en:
This dataset contains the raw environmental DNA data associated with the publication *Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord* in the journal Polar Biology (2023).

 Methods

**Sampling**
We sampled the Lilliehöök fjord on the west coast of Spitsbergen (Svalbard, Norway) over 3 days from 3 to 5 of August 2021. Samples were taken from the glacier front up to the fjord mouth of the Krossfjorden system, around 30 km long, after the Lilliehöök fjord merged with the mouth of Möller fjord. The fjord’s maximum depth has been recorded at 373 m (Svendsen et al. 2002) and has no sill at its entrance, thereby facilitating water exchange with the open ocean of the West Spitsbergen Current. We used a research vessel to sample 5 sites for a total of 15 samples, sampling 3 depths per site (3-m, chlorophyll a maximum and 85-m, unless sea floor was shallower). Shallow and intermediate samples between 3-m and 12-m represent ~35-L of water filtered in-situ using long tubing and a peristaltic pump, and all other deeper samples were taken from a total of 3 Niskin bottles (General Oceanics), representing 22-L of water sampled per sample. Water was filtered through a VigiDNA filtration capsule (SPYGEN) with a 0.20-µm pore size using an Athena peristaltic pump (Proactive Environmental Products, Bradenton, Florida) with a flow rate of ~1-L/min. Each sample was handled with single use tubing and gloves.

**Molecular**
To perform the amplification, we used two sets of primers: teleo (forward: ACACCGCCCGTCACTCT, reverse: CTTCCGGTACACTTACCATG; Valentini et al. 2016) and the universal eukaryotic 1389F/1510R primer pair, amplifying the V9-18S rDNA gene (Amaral-Zettler et al. 2009) (forward: TTGTACACACCGCCC, reverse: CCTTCYGCAGGTTCACCTAC).

 Data content:

+ Metabarcoding data: This zip file contains the 2 sequencing libraries filtered to only retain the samples used in the present study.
+ Code, data and figure: This zip file contains all data and code to reproduce the figures and the analysis in the study, with an associated README explaining the content of each folder.

 Additional informations
For more details, please see the Methods in the associated publication: DOI: 10.1007/s00300-023-03187-9.

biodiversity

display_name: biodiversity

dna-metabarcoding

display_name: dna-metabarcoding

environmental-dna

display_name: environmental-dna

fish

display_name: fish

fjord

display_name: fjord

marine

display_name: marine

plankton

display_name: plankton

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data: Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord


en: occupancy-models amphibians landscape connectivity conservation wetlands

en: Model code 2, description

media_type: text/html

en: This is the output of the R markdown file Model code 2 that provides JAGS model code and describes how to format the provided data and fit the dynamic occupancy models described in the second associated publication, for a quick overview.

format: HTML

en: Model code

en: This R markdown file contains all code and descriptions necessary to load and format the provided data and to fit the dynamic occupancy models described in the associated publication, including JAGS code for the fitted models.

en: Observation data

en: This file contains detection/non-detection data for the 12 amphibian species between 1999 and 2019 for 3 annual visits. Detectable denotes whether or not a visit j was made to pond i in year t. ObservedID gives a unique ID for the observer collecting the data during visit j to pond i in year t.

en: Structural connectivity data

en: This file contains structural connectivity data (three different metrics), calculated based on all existing ponds in each year, in long format. See Readme v2.0 for details. Required to run Model code 2.

en: Model code 2

en: This R markdown file contains all code and descriptions necessary to load and format the provided data and to fit the dynamic occupancy models described in the second associated publication, including JAGS code for the fitted models.

format: OCTET

en: Original raw data

en: This file contains the original raw monitoring data as provided by the canton of Aargau. Access is restricted and only considered upon request and in consultation with the canton of Aargau.

en: Model code, description

en: This is the output of the R markdown file that provides JAGS model code and describes how to format the provided data and fit the dynamic occupancy models described in the associated publication, for a quick overview.

en: Potential population connectivity data

en: This file contains potential population connectivity data (three different metrics), calculated based on all existing and occupied ponds in each year, for each species, in long format. See Readme v2.0 for details. Required to run Model code 2.

en: Readme

en: Description of methods and datasets. Version 1.

en: Readme, v 2.0

en: Description of methods and datasets. Version 2.0, including new datasets fro structural and potential population connectivity.

en: Covariate data 2

en: This file contains covariate data that changes over time for 856 ponds in 21 years (long format): whether or not a pond exists in year _t_, the age of constructed ponds in year _t_, structural connectivity of the pond in year _t_.

en: Covariate data 1

en: This file contains covariate data that does not change over time for 856 ponds: the region the pond is in, whether the pond is old or new (constructed since 1991), elevation, water surface area, fluctuations of the water table (yes, no), the percent forest cover in 100m radius around the pond, the area or large (>6m wide) roads in 1km radius around the pond.

en:
In the canton of Aargau, hundreds of new ponds have been constructed since the 1990s to benefit declining amphibian populations. This dataset consists of monitoring data for all 12 pond-breeding amphibian species in the canton of Aargau from 1999 to 2019 in 856 ponds, and environmental variables that describe the ponds and the landscape surrounding the ponds. Species observation data is detection/non-detection data from repeat visits during survey years, during which all potentially suitable ponds in an area were surveyed. Environmental variables describing the ponds are whether the pond has been newly constructed since 1991 or not, pond age (if constructed), elevation a.s.l., the water surface area, and whether the water table fluctuates or not. Environmental variables describing the surroundings of the ponds are the percent area of forest within a circular buffer of radius 100m around the pond, the area of large (width ≥6m) roads within a circular buffer of radius 1km around the pond, as well as structural and potential population connectivity, quantified by three different metrics each.
The canton of Aargau is the owner of the monitoring data; the original datafile is only disclosed upon request and in consultation with the canton of Aargau.
The edited dataset contains cleaned observation data for the 12 amphibian species, as well as compiled and edited covariate data and code to fit dynamic occupancy models.

amphibians

display_name: amphibians

connectivity

display_name: connectivity

conservation

display_name: conservation

landscape

display_name: landscape

occupancy-models

display_name: occupancy-models

wetlands

display_name: wetlands

en: Amphibian observation and pond data (Aargau, Switzerland)


maintainer: Brian W. McArdell

en: debris-flow magnitude monitoring-station illgraben force-plate

en: Illgraben debris-flow characteristics 2023

en:
List of key debris flow variables from the WSL Illgraben monitoring station (2023) such as occurrence date and time, peak flow depth, peak flow velocity, total volume and bulk density.
This table contains values based on our current analysis methods. The list will be updated annually after each debris flow season, and as our methods continue to improve, individual values may change slightly in the future.

debris-flow

display_name: debris-flow

force-plate

display_name: force-plate

illgraben

display_name: illgraben

magnitude

display_name: magnitude

monitoring-station

display_name: monitoring-station

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: radiation-transfer forest ecology microclimate biodiversity climate-change statistical-interpolation

en: Predicted microclimate air temperatures at 100 cm above ground. 10 m spatial resolution raster files are provided for mean daily minimum (tmin), mean (tmean) and maximum (tmax) temperatures during each month from April (04) to October (10) over the period between 2012 to 2021.

en: Predicted microclimate air temperatures at 5 cm above ground. 10 m spatial resolution raster files are provided for mean daily minimum (tmin), mean (tmean) and maximum (tmax) temperatures during each month from April (04) to October (10) over the period between 2012 to 2021.

en: Predicted microclimate topsoil temperatures at 5 cm below ground. 10 m spatial resolution raster files are provided for mean daily minimum (tmin), mean (tmean) and maximum (tmax) temperatures during each month from April (04) to October (10) over the period between 2012 to 2021.

en: Climate data matching the scales at which organisms experience climatic conditions are often missing. Yet, such data on microclimatic conditions are required to better understand climate-change impacts on biodiversity and ecosystem functioning. Here we combine a national network of microclimate temperature measurements with a novel radiative transfer model to map monthly minimum, mean and maximum temperatures during the vegetation period at a 10 meter spatial resolution across Switzerland. The temperature measurements took place in 107 sampling plots distributed across different habitat types, with 62 plots in forests, 22 below trees outside forests, and 23 in open grasslands. In each plot we measured temperature in the topsoil (-5cm), as well as in the air at 5cm and 100cm height above ground. Spatial interpolation was achieved by using a hybrid approach based on linear mixed effects models with input from detailed radiation estimates that account for topographic and vegetation shading, as well as other predictor variables related to the macroclimate, topography and vegetation height. Our data reveals strong horizontal and vertical variability in microclimate temperature, particularly for maximum temperatures at 5 cm above the ground and within the topsoil. Compared to macroclimate conditions as measured by weather stations outside forests, diurnal air and topsoil temperature ranges inside forests were reduced by up to 3.0 and 7.8 °C, respectively, while below trees outside forests, e.g. in hedges and below solitary trees, this buffering effect was 1.8 and 7.2 °C. We also found that in open grasslands, maximum temperatures at 5 cm above ground are on average 3.4 °C warmer than that of macroclimate, suggesting that in such habitats heat exposure close to the ground is often underestimated when using macroclimatic data. After accounting for macroclimate effects, microclimate patterns were primarily driven by radiation, with particularly strong effects on maximum temperatures. Results from spatial block cross-validation revealed predictive accuracies as measured by RSME’s ranging from 1.18 to 3.43 °C, with minimum temperatures generally being predicted more accurately than maximum temperatures. The microclimate maps presented here enable a more biologically relevant perspective when analysing climate-species interactions, which is expected to lead to a better understanding of biotic and ecosystem responses to climate and land use change.

biodiversity

display_name: biodiversity

climate-change

display_name: climate-change

ecology

display_name: ecology

forest

display_name: forest

microclimate

display_name: microclimate

radiation-transfer

display_name: radiation-transfer

statistical-interpolation

display_name: statistical-interpolation

en: Monthly topsoil and near surface microclimate temperature data for Switzerland


en: dispersal ecology biodiversity traits reef-fish

en: Input for the Global distribution maps for proportions of species richness for (a) simulated dispersal parameter value (b) observed dispersal-related traits

en: Geographic distribution data (species richness and proportions of high/low dispersal-related traits) on predominantly low dispersing and high dispersing species expected based on the simulations, and those where low- and high- dispersal related traits values are observed for the five investigated traits.

en: Donati et al. main script

en:
Main script used in : Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages"
accepted in Ecography, August 2019

en: Functions used in R scripts in: Donati et al. 2019 "A process-based-model supports an association between  # dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019

en: Functions for Figures illustrated in Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019.

en: Coral reef grid cells (shape, dbf, etc. files)

en:
Grid cells of 5 × 5°, corresponding to circa 555 × 555 km at the Equator (see Parravicini et al. 2013, Leprieur et al. 2016)

Parravicini, V. et al. 2013. Global patterns and predictors of tropi- cal reef sh species richness. – Ecography 36: 1254–1262.

Leprieur, F. et al. 2016. Plate tectonics drive tropical reef biodiver- sity dynamics. – Nat. Commun. 7: 11461.

mimetype: application/zip

en: Global simulated distribution of species under a range of dispersal parameter values

en:
Global distribution of simulated species richness under a range of dispersal parameter values d
d ∈ [1.75°: 5.45°].

en: Simulated rates of speciation and extinction under a range of dispersal parameters. Net diversification rates are calculated from the difference between speciation and extinction rates. This data allows the creation of Figure A4 in Supporting information, Appendix 1.

en: Supplementary material Appendix 1 Figures illustrated in Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages". accepted in Ecography, August 2019

en: Main text figures

en: R Script used for figures in main text in: Donati et al. 2019: "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019.

en: Tropical reef fish trait data

en:
Species trait (i.e. adult body size, home range mobility behaviour, circadian activity and schooling) data gathered from the General Approach to Species Abundance Relationships (GASPAR) database (Kulbicki et al. 2013, Parravicini et al. 2013).

Kulbicki, M. et al. 2013. Global biogeography of reef shes: a hier- archical quantitative delineation of regions. – PLoS One 8: e81847.

Parravicini, V. et al. 2013. Global patterns and predictors of tropi- cal reef sh species richness. – Ecography 36: 1254–1262.

To complement the trait data with Pelagic Larval Duration information refer to the following publication:

Luiz, Osmar J., et al. "Adult and larval traits as determinants of geographic range size among tropical reef fishes." Proceedings of the National Academy of Sciences 110.41 (2013): 16498-16502.

In Donati et al. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography in August 2019, we used the PLD gathered from Luiz et al. 2013 as described in the methods - section "Species trait data".

en: Global species distribution of tropical reef fish species

en: Each species corresponds to a "Gaspar_code" gathered from the General Approach to Species Abundance Relationships (GASPAR) database (Kulbicki et al. 2013, Parravicini et al. 2013) and is linked to a specific Fishned ID corresponding to a specific Latitude and Longitude.

en: Global coast files from https://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html used in the Figures

en: Input for spatial congruence test overlap between proportions of low and high dispersal and observed low- and high- dispersal-related traits in assemblages (30-50% threshold). see Table 2.

en: Dispersal parameter value d per simulation starting with a minimum dispersal value, where each species is able to colonise each adjacent cell, and ending with the value of d for which all the extant habitats, including the most remote Pacific islands, have been colonised (d ∈ [1.75°: 5.45°]).

en:
This dataset contains all data and R codes (R Development Core Team, https://www.R-project.org) used in the following publication: Donati GFA, Parravicini V, Leprieur F, Hagen O, Gaboriau T, Heine C, Kulbicki M, Rolland J, Salamin N, Albouy C, Pellissier L. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted by Ecography in August 2019. When using this data and R scripts the above publication should be cited.

The interaction of habitat dynamics with species dispersal abilities could generate gradients
in species diversity and prevalence of life-history and ecological traits, when the latter are associated with dispersal potential. In this dataset, we use a spatial mechanistic model of speciation, extinction and dispersal, constrained by a dispersal parameter. This model allows to simulate the interplay between reef habitat dynamics over the past 140 million years and dispersal, shaping lineage diversification history and global assemblage composition of over 6000 tropical reef fish species. Global trait distribution data of tropical reef fish are used to evaluate the congruence between simulations and observations.

dispersal

display_name: dispersal

reef-fish

display_name: reef-fish

traits

display_name: traits

en: Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide


maintainer: Jokin Idoate-Lacasia

en: carbon-storage forest-inventory forest-reserves biomass-dynamics environmental-gradients

en: Climatic space covered by the Swiss National Forest Inventory (NFI) that will be used in Figure 5.

en: R markdown document used to download the data files, reproduce the analysis and plot generation.

en:
This dataset documents the analyses and the plot generation for the manuscript **Long-term biomass dynamics in temperate forests in Europe after cessation of management**.
We analyse biomass development in an extensive network of 224 plots in 37 natural forest reserves (NFR) covering a wide environmental gradient with mean annual temperatures ranging from 1 to 10.4 °C and mean annual precipitation ranging from 901 to 2317 mm. Forest inventories have been conducted approximately every 10 years during the last 60 years.
It consists of the following files:
+ **Long_term_biomass_script.Rmd**: R markdown document to reproduce the analysis and the plot generation.
+ **dat_biomass.RDS**: Biomass values for each permanent plot at each inventory. This dataset is used for data exploration and for the Biomass model, and to create Figure 2 and Figure 3.
+ **dat_biomass_change.RDS**: Biomass change values between inventories for each permanent plot. It includes the explanatory variables as well. This dataset is used for the Biomass change model and to create Figure 4 and Figure 5.
+ **NFI_climspace_netCDF.RDS**: Climatic space covered by the Swiss National Forest Inventory (NFI) that is used in Figure 5.

biomass-dynamics

display_name: biomass-dynamics

carbon-storage

display_name: carbon-storage

environmental-gradients

display_name: environmental-gradients

forest-inventory

display_name: forest-inventory

forest-reserves

display_name: forest-reserves

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Long-term biomass dynamics of temperate forests in Europe after cessation of management


en: teleo chondrichthyes bayofbiscay actinopterygii metabarcoding edna atlantic-region fish-composition

en: Data access

en:
Environmental DNA complements scientific trawling in surveys of marine fish biodiversity (Dataset 2019)
In October 2019 we chose 15 sites from the 2019 EVHOE survey for eDNA sampling. The French international EVHOE bottom trawl survey is carried out annually during autumn in the BoB to monitor demersal fish resources. At each site, we sampled seawater using Niskin bottles deployed with a circular rosette. There were nine bottles on the rosette, each of them able to hold ∼5 l of water. At each site, we first cleaned the circular rosette and bottles with freshwater, then lowered the rosette (with bottles open) to 5 m above the sea bottom, and finally closed the bottles remotely from the boat. The 45 l of sampled water was transferred to four disposable and sterilized plastic bags of 11.25 l each to perform the filtration on-board in a laboratory dedicated to the processing of eDNA samples. To speed up the filtration process, we used two identical filtration devices, each composed of an Athena® peristaltic pump (Proactive Environmental Products LLC, Bradenton, Florida, USA; nominal flow of 1.0 l min–1 ), a VigiDNA 0.20 μm filtration capsule (SPYGEN, le Bourget du Lac, France), and disposable sterile tubing. Each filtration device filtered the water contained in two plastic bags (22.5 l), which represent two replicates per sampling site. We followed a rigorous protocol to avoid contamination during fieldwork, using disposable gloves and single-use filtration equipment and plastic bags to process each water sample. At the end of each filtration, we emptied the water inside the capsule that we replaced by 80 ml of CL1 conservation buffer and stored the samples at room temperature following the specifications of the manufacturer (SPYGEN, Le Bourget du Lac, France). We processed the eDNA capsules at SPYGEN, following the protocol proposed by Polanco-Fernández et al., (2020). We performed library preparation and sequencing at Fasteris (Geneva, Switzerland). Specifically, we prepared four libraries using the MetaFast protocol (a ligation-based method) and sequenced them separately. We carried out paired-end sequencing using a MiSeq sequencer (2 × 125 bp, Illumina, San Diego, CA, USA) on two MiSeq Flow Cell Kits (v3; Illumina), following the manufacturer’s instructions. We analysed the sequence reads using the OBITools package (http://metabarcoding.org/obitools; Boyer et al., 2016), following the protocol described by Valentini et al. (2016).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

actinopterygii

display_name: actinopterygii

atlantic-region

display_name: atlantic-region

bayofbiscay

display_name: bayofbiscay

chondrichthyes

display_name: chondrichthyes

edna

display_name: edna

fish-composition

display_name: fish-composition

metabarcoding

display_name: metabarcoding

teleo

display_name: teleo

en: Environmental DNA Marine France Evhoe 2019


en: morphology landscape-genetics landscape indian-ocean landscape-evolution reef-fish

en:
Tropical reef fishes exhibit a large disparity of organismal morphologies contributing to their astonishing biodiversity. Morphological disparity, scaling from differences among individuals within populations to differences among species, is governed by ecological and evolutionary processes.
Here, we examined the relationship between intra- and interspecific disparity in 1111 individuals from 17 tropical reef fish species, representing 10 families with different dispersal abilities, across four Indian Ocean regions. We compared intraspecific measurements with species-level measures from a database of 1061 reef fish species. Species with high morphological disparity among individuals from distinct regions are found to be nested in families that display a high disparity among their genera. We show an association between the morphological disparity at the intra- and interspecific levels for several morphological ratios such as the caudal peduncle elongation. We evaluated the link between morphological disparity and genetic diversity with species dispersal ability. A structural equation model indicates that dispersal ability correlates positively with species genetic diversity, which is associated with morphological disparity.
Our results suggest that traits associated with dispersal may foster gene flow and morphological evolution. However, future works combining genomic, morphological and environmental data across more species is necessary to generalize these findings to other regions.

indian-ocean

display_name: indian-ocean

landscape

display_name: landscape

landscape-evolution

display_name: landscape-evolution

landscape-genetics

display_name: landscape-genetics

morphology

display_name: morphology

en: Continuity in morphological disparity in tropical reef fishes across evolutionary scales


en: nematodes grassland bacteria plants soil-biodiversity fungi soil-chemistry soil biodiversity soil-biology topsoil-removal restoration

en: Networks

en:
Treatment	Treatment groups; Y.4-18 = restored grasslands; Initial = intensively managed grasslands; Target = species-rich semi-wet to semi-dry grasslands
Correlation	non-parametric Spearman rank correlations
Vertex.1+2	Comparison between network components; N.pool = total soil nitrogen pool [kg ha-1 12 cm-1]; Corg.pool = soil organic carbon pool [kg ha-1 12 cm-1], pH = soil pH [CaCl2]; BD = bulk density [g cm-3]; FC = field capacity [%]
	PCoA 1 + 2 biotic communities [Veg = vegetation; Nem = nematoda; Fun = fungi; Prok = prokaryota]
Type	Interactions type; A.A = abiotic.abiotic; A.B = abiotic.biotic; B.B = biotic.biotic

en: Nematode data

en:
Sample.data
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)

Taxonomy
ASV.ID	unit number.letter code per amplicon sequence variant (in total 904)
Taxonomic rank	Phylum, Class, Order, Family, Genus, Species

Abundance
columns	Plot.ID (see Sample.data)
rows	ASV.ID (see Taxonomy)

en: Vegetation data

en:
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)
column I-LW	Plant abundance per species (in total 327 plant species) expressed as cover percentage estimation according to van der Maarel (vdM 1979; 7 classes: 1-7); nomenclature according to Lauber & Wagner (1996)

en: Distance to target results

en:
Community	biotic community (vegetation, nematoda, fungi, prokaryota)
Treatment	Treatment groups; Y.4-30= restored grasslands (time since restoration); Initial=intensively managed grasslands (I)
Comparison	within- or between-community Bray-Curtis dissimilarity distance comparison
Label	within-community distances of initial/restored grasslands: treatment abbreviation; between-communities distances of initial/restored-to-target grasslands: treatment abbreviation plus Target (T; species-rich grasslands)
mean	Mean distance to Target (6 plots per treatment group)
sd	Standard deviation of distances to Target (6 plots per treatment group)

en: Fungi data

en:
Sample.data
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)

Taxonomy
OTU.ID	consecutive numbers for operational taxonomic units (OTUe 1-7794)
Taxonomic rank	Domain, Phylum, Class, Order, Family, Genus, Species

Abundance
columns	Plot.ID (see Sample.data)
rows	OTU.ID (see Taxonomy)

en: Soil properties

en:
Plot.ID	consecutive numbers for plots (in total 36 plots)
Treatment	One restoration treatment and two reference treatments. Topsoil+Propagules= Topsoil removal (upper 10-30 cm) combined with introduction of target plant species; Initial=intensively managed grasslands; Target= species-rich semi-wet to semi-dry grasslands
treat.yr	Treatment abbreviation. For restored grasslands: Treatment abbreviation + time since restoration; Initial + Target = NA
yr.trt	year when topsoil was removed; Initial + Target = NA
Age	time since restoration (sampling year 2018 - yr.trt); Initial + Target = NA
Age.class	restored sites of similar age grouped into four age classes. Y.4 = Year 3+4 (recently restored); Y.18 = Year 17+19 (mid-term); Y.24 = Year 23+25 (long-term); Y.30 = Year 27+32 (long-term); Initial + Target = NA
Cluster	clustered spatial arrangment of sites in the field (see Supporting Information Fig. S1)
Site	clustered spatial arrangment (replicates) of plots per site (see Supporting Information Fig. S1)
N.pool	Soil nitrogen pool (June 2017); corrected for bulk density and 12 cm sampling depth [kg ha-1 12cm-1]
Corg.pool	Soil organic carbon pool (June 2017); corrected for bulk density and 12 cm sampling depth [kg ha-1 12cm-1]
pH	soil pH [CaCl2]
BD	Bulk density [g cm-3]
FC	Field capacity [%]
Veg.1	principle coordinate axis 1 (vegetation)
Veg.1	principle coordinate axis 2 (vegetation)
Nem.1	principle coordinate axis 1 (nematoda)
Nem.2	principle coordinate axis 2 (nematoda)
Fun.1	principle coordinate axis 1 (fungi)
Fun.2	principle coordinate axis 2 (fungi)
Prok.1	principle coordinate axis 1 (prokaryota)
Prok.2	principle coordinate axis 2 (prokaryota)
Veg.H	Shannon diversity (vegetation)
Nem.H	Shannon diversity (nematoda)
Fun.H	Shannon diversity (fungi)
Prok.H	Shannon diversity (prokaryota)

en: Ecosystem coupling_interactions

en:
Treatment	Treatment groups; Y.4-18 = restored grasslands; Initial = intensively managed grasslands; Target = species-rich semi-wet to semi-dry grasslands
Type	Interactions type; A.A = abiotic.abiotic; A.B = abiotic.biotic; B.B = biotic.biotic
Correlation	non-parametric Spearman rank correlations between biotic and abiotic parameters (ecological interactions)

en:
This dataset contains all data, on which the following publication below is based.

Paper Citation:

_Resch, M.C., Schütz, M., Ochoa-Hueso, R., Buchmann, N., Frey, B., Graf, U., van der Putten, W.H., Zimmermann, S., Risch, A.C. (in review). Long-term recovery of above- and belowground interactions in restored grassland after topsoil removal and seed addition. Journal of Applied Ecology_

Please cite this paper together with the citation for the datafile.

Study area and experimental design
The study was conducted in and around two nature reserves, Eigental and Altläufe der Glatt, which were located approximately 5 km apart (47°27´ to 47°29´ N, 8°37´ to 8°32´ E, 417 to 572 m a.s.l., Canton of Zurich, Switzerland; Figure S1 and S2, Table S1). Mean annual temperature and precipitation are 9.8 ± 0.6 °C and 990 ± 168 mm (Kloten climate station 1988-2018; MeteoSchweiz, 2019). TFor this study, we used a space-for-time approach based on eight restoration sites that were between 3 and 32 years old. We measured recovery and restoration success by comparing the restored grasslands with intensively managed and semi-natural grasslands. Using a space-for-time approach requires high similarities in historical properties of the site, such as soil conditions and management regimes, to assure that temporal processes are appropriately represented by spatial patterns (Walker et al., 2010). This was the case in our study. The restored sites had similar soil conditions (i.e., soil type, structure, water availability) as the targeted semi-natural grasslands, while they shared the same agricultural legacy with intensively managed grasslands, i.e., biomass harvest and fertilization (manure and/or slurry) three to five times a year as well as tillage. We randomly established three 5 m x 5 m (25-m2) plots for plant identification and three 2 m x 2 m (4-m2) subplots for soil biotic and abiotic data collection at least 2 m away from the 25-m2 plots in each restoration site. Sites of similar age were grouped into four age classes: Y.4 (3 & 4 years after restoration), Y.18 (17 & 19 years), Y.24 (23 & 25 years), and Y.30 (27 & 32 years). Six intensively managed (Initial) and six semi-natural grassland (Target) sites complemented the experimental set-up, for a total of 36 plots. All plots were sampled under similar conditions, i.e., day of the year, air temperature, soil moisture, and time since last rain event, in June/July 2017 (intensively managed and semi-natural plots) and 2018 (restored plots).

Collection of plants and selected soil biota data
Plant species cover (in %) was visually estimated in each 25-m2 plot in mid-June (Braun-Blanquet, 1964; nomenclature: Lauber & Wagner, 1996). We calculated Shannon diversity and assessed plant community structure. We included soil microbial (fungi, procaryotes) and nematodes in our study as they represent the majority of soil biotic diversity and abundance (Bardgett & van der Putten, 2014), cover various trophic levels of the soil food web (Bongers & Ferris, 1999), and play key roles in soil functioning and ecosystem processes (Bardgett & van der Putten, 2014). In particular, soil nematodes were found to be well suited belowground indicators to evaluate recovery/development after restoration (e.g. Frouz, et al. 2008; Kardol et al., 2009; Resch et al., 2019). We randomly collected ten soil cores (2.2 cm diameter x 12 cm depths; sampler from Giddings Machine Company, Windsor, USA) in the 4-m2 subplots to assess soil nematode and microbial (fungal, prokaryotic) diversities and community structures. For soil nematodes, eight of the soil cores were combined and gently homogenized, placed in coolers and stored at 4 °C and transported to the laboratory (Netherlands Institute of Ecology, NIOO, Wageningen, Netherlands) within three days after collection. Free-living nematodes were extracted from 200 g of fresh soil using Oostenbrink elutriators (Oostenbrink, 1960). After extraction, each sample was divided into three subsamples, two for molecular identification and one to determine nematode abundance (see Resch et al., 2019). For the molecular work, two subsamples were stored in 70% ethanol (final volume 10 mL each) and transported to the laboratory at the Swiss Federal Research Institute WSL (Birmensdorf, Switzerland). Each subsample was reduced to roughly 200 μL by centrifugation and removal of the supernatant. The remaining ethanol was vaporized (65 °C for 3 h). Thereafter, 180 μL ATL buffer solution (Qiagen, Hilden, Germany) was immediately added and samples were stored at 4 °C until further processing. From these samples, nematode metagenomic DNA was extracted using the DNeasy Blood & Tissue Kit (Qiagen, Hilden, Germany) according to the manufacturer`s protocol, except for the incubation step which was run at 56 °C for 4 h. PCR amplification of the V6-V8 region of the eukaryotic small-subunit (18S) was performed with 7.5 μL of genomic DNA template (ca. 1 ng/μL) in 25 μL reactions containing 5 μL PCR reaction buffer, 2.5 mM MgCL2, 0.2 mM dNTPs, 0.8 μM of each primer (NemF: Sapkota & Nicolaisen, 2015; 18Sr2b: Porazinska et al., 2009), 0.5 μL BSA, and 0.25 μL GoTaq G2 Hot Start Polymerase (Promega Corporation, Madison, USA). Amplification was using an initial DNA denaturation step of 95 °C for 2 min, followed by 35 cycles at 94 °C for 40 sec, 58 °C for 40 sec, 72 °C for 1 min, and a final elongation step at 72 °C for 10 min. Filtering, dereplication, sample inference, chimera identification, and merging of paired-end reads was implemented using the DADA2 pipeline (v.1.12; Callahan et al., 2016) to finally assign amplicon sequence variants (ASVs) as taxonomic units.
We combined and homogenized the remaining two soil cores to assess soil microbes, placed them in coolers (4 °C) and transported them to the laboratory at WSL. Metagenomic DNA was extracted from 8 g sieved soil (2 mm) using the DNAeasy PowerMax Soil Kit (Qiagen, Hilden, Germany) according to the manufacturer´s protocol. PCR amplification of the V3-V4 region of the small-subunit (16S) of prokaryotes (i.e., bacteria and archaea) and the ribosomal internal transcribed spacer region (ITS2) of fungi was performed with 1 ng of template DNA using PCR primers and conditions as previously described (Frey et al., 2016). PCRs were run in triplicates, pooled and sent to the Genome Quebec Innovation Centre (Montreal, QC, Canada) for barcoding using the Fluidigm Access Array technology (Fluidigm) and paired-end sequencing on the Illumina MiSeq v3 platform (Illumina Inc., San Diego, USA). Quality filtering, clustering into operational taxonomic units (OTUs, 97% similarity cutoffs) and taxonomic assignment were performed as previously described (Resch et al., 2021).Taxonomic classification of nematode, prokaryotic and fungal sequences was conducted querying against the most recent versions of PR2 (v.4.11.1; Guillou et al., 2013), SILVA (v.132; Quast et al., 2013), and UNITE (v.8; Nilsson et al., 2019) reference sequence databases. Taxonomic assignment cutoffs were set to confidence rankings ≥ 0.8 (below ranked as unclassified). Prokaryotic OTUs assigned to mitochondria or chloroplasts as well as OTUs or ASVs assigned to other than Fungi or Nematoda were manually removed prior to data analysis. The three datasets were filtered to discard singletons and doubletons. Taxonomic abundance matrices were rarefied to the lowest number of sequences per community to achieve parity of the total number of reads between samples (Prokaryotes: 10,929 reads; Fungi: 18,337 reads; Nematodes: 6,662 reads). We calculated Shannon diversity and assessed community structures for soil nematodes, prokaryotes and fungi based on their relative abundances of ASV or OTU at the taxon level.

Collection of soil physical and chemical properties
We randomly collected one undisturbed soil core (5 cm diameter, 12 cm depth) per 4-m2 subplot using a steel cylinder that fit into the soil corer. The cylinders were capped to avoid disturbance during transport and used to measure field capacity, rock content and fine earth density as previously described (Resch et al., 2021). We randomly collected another three soil cores (5 cm diameter, 12 cm depths) in each 4-m2 subplot to determine soil chemical properties. The cores were pooled, dried at 60 °C for 48 h and passed through a 2 mm sieve. We measured soil pH (CaCl2) on dried samples, total nitrogen (N) and organic carbon (C) concentration on dried and fine-ground samples (≤ 0.5 mm; for details see Resch et al., 2021). We calculated total N and organic C pools after correcting its concentration for soil depth, rock content and fine earth density.

bacteria

display_name: bacteria

biodiversity

display_name: biodiversity

fungi

display_name: fungi

grassland

display_name: grassland

nematodes

display_name: nematodes

plants

display_name: plants

restoration

display_name: restoration

soil

display_name: soil

soil-biodiversity

display_name: soil-biodiversity

soil-biology

display_name: soil-biology

soil-chemistry

display_name: soil-chemistry

topsoil-removal

display_name: topsoil-removal

en: Long-term recovery of above-and belowground interactions in restored grasslands


en: piloderma-croceum rhythmic-growth ectomycorrhiza quercus-robur cenococcum-geophilum oak

en:
Contains growth stage data assessed over the experimental period.
Columns:
- ID = Tree identifier.
- Set = Date of plant preparation.
- Treatment = Experimental treatment.
- Date = Date of growth stage assessment,
- Days = Number of past days since start of experiment.
- Stage = Growth stage (XY = Groth cycle & development stage).
- Week = Experimental week.

en:
Contains phenotypic data assessed during the destructive sampling step of the experiment.
Columns:
- ID = Tree identifier.
- Treatment = Experimental treatment.
- nSF = Number of completed shoot flushes.
- Max_Stages_Reached = Total number of growth stages reached during the experiment.
- n_L_SF1 = Number of leaves of the second newest shoot flush at time of sampling.
- n_L_SF2 = Number of leaves of the newest shoot flush at time of sampling.
- Alive = Plant alive or not.
- Contamination = Plant contaminated or not.
- Exclude = Exclude plant or not.
- Shoot_Length_Init = Shoot length at start of the experiment.
- Shoot_Length = Shoot length at sampling.
- Delta_Length = Shoot length increase during experiment.
- FW_Plant = Fresh weight total plant.
- DW_Plant = Dry weight total plant.
- FW_Shoot = Fresh weight shoot.
- DW_Shoot = Dry weight shoot.
- FW_Stem = Fresh weight stem.
- DW_Stem = Dry weight stem.
- FW_L_SF1 = Fresh weight leaves second newest shoot flush.
- DW_L_SF1 = Dry weight leaves second newest shoot flush.
- FW_L_SF2 = Fresh weight leaves newest shoot flush.
- DW_L_SF2 = Dry weight leaves newest shoot flush.
- FW_L_Rest = Fresh weight remaining leaves.
- DW_L_Rest = Dry weight remaining leaves.
- FW_Bud = Fresh weight bud.
- DW_Bud = Dry weight bud.
- FW_Roots_Total = Fresh weight total roots.
- DW_Roots_Total = Dry weight total roots.
- FW_PR = Fresh weight principal roots.
- DW_PR = Dry weight principal roots.
- FW_LR = Fresh weight lateral roots.
- DW_LR = Dry weight lateral roots.
- A_L_SF1 = Leave area second newest shoot flush.
- A_L_SF2 = Leave area newest shoot flush.
- N_Ceno = Number of root tips mycorrhized by *Cenococcum geophilum*.
- N_Pilo = Number of root tips mycorrhized by *Piloderma croceum*.
- N_Other = Number of root tips mycorrhized by other species.
- N_No = Number of not mycorrhized root tips.
- Length_Tot = Total root length.
- Area_Tot = Total root surface area.
- Diameter_Avg = Average root diameter.
- Root_Vol = Total root volume.
- Tips = Total number root tips.
- Forks = Total number root forks.
- Crossings = Total number root crossings.
- Length_Fine = Root length fine roots (diameter < 1mm).
- SA_Fine = Surface area fine roots (diameter < 1mm).
- Vol_Fine = Volume fine roots (diameter < 1mm).

en:
In this experiment, we investigated the inoculation-effects of two ectomycorrhizal fungi (EMF) species with contrasting evolutionary histories, ecological properties, host-preferences, and habitat-ranges on phenotypic responses and growth dynamics of pedunculate oak (*Quercus robur*), an ecologically and economically important temperate forest tree species.

We set up the mycorrhization experiment using 96 plants of a genetically uniform *Q. robur* clone (DF159) and applied four treatments: A control treatment; an inoculation-treatment with the cosmopolitan Ascomycete *Cenococcum geophilum*, which is commonly found in oak forests; an inoculation-treatment with the Basidiomycete *Piloderma croceum*, which has not yet been found in natural oak forests but has been shown in previous experiments to support oak growth; and a co-inoculation treatment. We then assessed growth stage development of the trees over eight experimental weeks and measured various phenotypic traits during a destructive sampling.

cenococcum-geophilum

display_name: cenococcum-geophilum

ectomycorrhiza

display_name: ectomycorrhiza

oak

display_name: oak

piloderma-croceum

display_name: piloderma-croceum

quercus-robur

display_name: quercus-robur

rhythmic-growth

display_name: rhythmic-growth

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Phenotypic and Growth Stage Development Data of a Quercus robur Mycorrhization Experiment


maintainer: Vanessa Burg

en: bioenergy switzerland manure biogas review

en: Biogas from animal manure in Switzerland: energy potential, technology development and resource mobilization

en: Aim of this white paper is to provide decision-makers, administrations and stakeholders with the most current research findings in order to promote the optimal use of bioenergy from manure in the Swiss energy transition. For this purpose, the results of the Swiss competence center for bioenergy research - SCCER BIOSWEET - are summarized and presented in a broader context. If nothing else is mentioned, the results refer to Switzerland and in case of the feedstock to the domestic biomass potentials.

bioenergy

display_name: bioenergy

biogas

display_name: biogas

manure

display_name: manure

review

display_name: review

switzerland

display_name: switzerland


maintainer: Esther Frei

en: literature-review treeline-ecosystems stillberg long-term-experiment mountain-ecology

en: The Stillberg bibliography (Stillberg_bibliography_v1.zip) comprises a comprehensive list of 276 scientific publications, 91 of them published in peer-reviewed ISI journals (Stillberg_bibliography_data_v1.csv) along with the metadata file (Stillberg_bibliography_metadata_v1.csv). Currently the bibliography comprises literature about the main afforestation experiment, the FACE × warming experiment, the nutrient addition experiment, and the G-TREE experiment, as well as further publications related to the Stillberg research site that have been published until August 2023. The bibliography can be filtered for different categories, e.g., experiment, peer-review, source repository or database, and source title.

en:
 Background information

The Stillberg ecological treeline research site in the Swiss Alps was established in 1975, with the aim to develop ecologically, technically, and economically sustainable reforestation techniques at the treeline to reduce the risk of snow avalanches. In the course of time, additional research aspects gained importance, such as the ecology of the treeline ecotone under global change. Over almost fifty years, research at the Stillberg site combined long-term monitoring of the large-scale high-elevation afforestation with experimental manipulations simulating global change impacts. Besides providing a scientific basis and practical guidelines for high-elevation afforestation, this research has contributed to a comprehensive understanding of ecological processes in the treeline ecotone across different compartments and scales, from individual trees, non-tree vegetation and soils to whole ecosystems, in the context of global change resulting in more than 150 publications.

 Dataset generation

We compiled a comprehensive list of scientific publications covering research at the Stillberg research site by conducting searches in the literature databases Web of Science and Google Scholar, as well as in the Digital Object Repository of the Swiss Federal Institute for Forest, Snow and Landscape Research WSL (DORA). We compiled all publications about the afforestation experiment, the FACE × warming experiment, the nutrient addition experiment, the G-TREE experiment, as well as other studies related to the Stillberg research site.

 Data description

The Stillberg bibliography (Stillberg_bibliography_data_v1.csv) comprises a comprehensive list of 276 scientific publications, 91 of them published in peer-reviewed ISI journals. Currently the bibliography comprises literature about the main afforestation experiment, the FACE × warming experiment, the nutrient addition experiment, and the G-TREE experiment, as well as further publications related to the Stillberg research site that have been published until August 2023. The bibliography can be filtered for different categories, e.g., experiment, peer-review, source repository or database, and source title. The bibliography is described in a metadata file (Stillberg_bibliography_metadata_v1.csv). The bibliography along with the metadata file are provided in a ZIP-folder (Stillberg_bibliography_v1.zip).

literature-review

display_name: literature-review

long-term-experiment

display_name: long-term-experiment

mountain-ecology

display_name: mountain-ecology

stillberg

display_name: stillberg

treeline-ecosystems

display_name: treeline-ecosystems

en: Bibliography of the long-term treeline research site Stillberg, Switzerland


greenland-shrubs-and-microclimate

maintainer: Nathalie Chardon

title_for_slug: greenland-shrubs-and-microclimate

en: climate validation arctic accessible-shrub-forest field-data sdm

en: GitLab Repository

en: Zip drive of GitLab repository contents (https://gitlab.com/nathaliechardon/gl_microclim).

en: Nuup Kangerlua

en:
 Collected July-August 2011-2013 (PI: Jacob Nabe-Nielsen)

These data collected July-August 2011-2013 (PI: Jacob Nabe-Nielsen). Please contact J. Nabe-Nielsen (jnn_at_ecos.au.dk) to request access to data on all surveyed shrub species. Available here are only data used in Chardon et al. 2022.

 COLUMN ABBREVIATIONS

 Metadata for 90 m spatial grid

year: sampling year

alt: average altitude of grid as recorded during field surveys [m]

long: WGS84 longitude

lat: WGS84 latitude

x_stere: longitude in Polar Stereographic (EPSG 4326)

y_stere: latitude in Polar Stereographic (EPSG 4326)

 Species presence [1] or absence [0] at grid level

pa_bena: _Betula nana_

pa_sagl: _Salix glauca_

 Shrub species cover (calculated from pin hits in 0.7 x 0.7 m frame, based on total of 25 hits) [%]

cov_bena: _Betula nana_ cover

cov_sagl: _Salix glauca_ cover

 Downscaled climate (time series 1984 – 2013)

tempjja: average maximum June-August temperature [ºC]

tempmax: yearly maximum temperature [ºC]

tempmin: yearly minimum temperature [ºC]

tempcont: yearly maximum – minimum temperature [ºC]

precipmam: cumulative March-May precipitation [mm]

precipjja: cumulative June-August precipitation [mm]

insoljja: average June-August insolation [MJ cm-2 yr-1]

 Topography and terrain wetness (calculated from)

twi: SAGA wetness index (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015)

slope: slope angle (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

asp: aspect (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

tcws: Tasseled Cap Wetness component (Sentinal images)

 Community characteristics

rich: shrub species richness averaged across pin-point frames per grid

shan: Shannon diversity (‘vegan’ package; Oksanen et al. 2019)

comp_bena: shrub competition on Betula nana (i.e. summed cover of non-_B. nana_ species) [% cover]

comp_sagl: shrub competition on Salix glauca (i.e. summed cover of non-_S. glauca_ species) [% cover]

en: Kangerluarsunnguaq

en:
 Collected August 2020 (PI: Nathalie Isabelle Chardon)

These data collected August 2020 (PI: Nathalie Isabelle Chardon). Please contact N. I. Chardon (nathalie.chardon_at_gmail.com) for individual quadrat (i.e. 1 m x 1 m) data, which are averaged at the 90 m spatial grid here.

 COLUMN ABBREVIATIONS

 Metadata for 90 m spatial grid

id: sampling zone and unique 90 m grid identifier

long: WGS84 longitude

lat: WGS84 latitude

x_stere: longitude in Polar Stereographic (EPSG 4326)

y_stere: latitude in Polar Stereographic (EPSG 4326)

date: sampling day.month.year

 Species presence [1] or absence [0] at grid level

alcr: _Alnus crispa_

bena: _Betula nana_

dila: _Diapensia lapponica_

emni: _Empetrum nigrum_

hahy: _Harimanella hypoides_

lopr: _Loiseleuria procumbens_

oxpa: _Oxycoccus palustre_

phca: _Phyllodoce caerulea_

rhod: _Rhododendron_ sp.

saar: _Salix arctica_

sagl: _Salix glauca_

sahe: _Salix herbacea_

vaul: _Vaccinium uliginosum_

drin: _Dryas integrifolia_

thpr: _Thymus praecox_

 Habitat characteristics [% cover]

shrub: all shrub species

gram: graminoids

forb: forbs

bryo: bryophytes

lich: lichens

litt: litter

bare: bare ground

stone: stones (> 2 cm)

org: organic crust

 Shrub species height (maximum vegetative height) [mm] and cover (estimated in 1x1 m quadrat) [%]

alcr_c: _Alnus crispa_ cover

alcr_h: _Alnus crispa_ height

bena_c: _Betula nana_ cover

bena_h: _Betula nana_ height

dila_c: _Diapensia lapponica_ cover

dila_h: _Diapensia lapponica_ height

emni_c: _Empetrum nigrum_ cover

emni_h: _Empetrum nigrum_ height

hahy_c: _Harimanella hypoides_ cover

hahy_h: _Harimanella hypoides_ height

lopr_c: _Loiseleuria procumbens_ cover

lopr_h: _Loiseleuria procumbens_ height

oxpa_c: _Oxycoccus palustre_ cover

oxpa_h: _Oxycoccus palustre_ height

phca_c: _Phyllodoce caerulea_ cover

phca_height: _Phyllodoce caerulea_ height

rhod_c: _Rhododendron_ sp. cover

rhod_h: _Rhododendron_ sp. height

saar_c: _Salix arctica_ cover

saar_h: _Salix arctica_ height

sagl_c: _Salix glauca_ cover

sagl_h: _Salix glauca_ height

sahe_c: _Salix herbacea_ cover

sahe_h: _Salix herbacea_ height

vaul_c: _Vaccinium uliginosum_ cover

vaul_h: _Vaccinium uliginosum_ height

drin_c: _Dryas integrifolia_ cover

drin_h: _Dryas integrifolia_ height

 Community characteristics

rich_pa: shrub species richness at grid level

rich: shrub species richness averaged across 3 1x1 m sampling quadrats per grid

shan: Shannon diversity (‘vegan’ package; Oksanen et al. 2019)

comp_bena: shrub competition on _Betula nana_ (i.e. summed cover of non-_B. nana_ species) [% cover]

comp_sagl: shrub competition on _Salix glauca_ (i.e. summed cover of non-_S. glauca_ species) [% cover]

ht_cwm: maximum shrub canopy height (i.e. community weighted mean by abundance of maximum shrub height) [mm]

 Topography and terrain wetness (calculated from)

tcws: Tasseled Cap Wetness component (Sentinal images)

slope: slope angle (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

twi: SAGA wetness index (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015)

asp: aspect (MEaSUREs Greenland Ice Mapping Project Digital Elevation Model v. 1; Howat et al., 2014, 2015) [º]

 Downscaled climate (time series 1984 – 2013)

insoljja: average June-August insolation [MJ cm-2 yr-1]

precipmam: cumulative March-May precipitation [mm]

tempcont: yearly maximum – minimum temperature [ºC]

tempmin: yearly minimum temperature [ºC]

precipjja: cumulative June-August precipitation [mm]

tempjja: average maximum June-August temperature [ºC]

tempmax: yearly maximum temperature [ºC]

en:
 Study Aim

We collected these data to alternatively train and validate high resolution (~ 90 m) Species Distribution Models (SDMs) and Species Abundance Models (SAMs) for _Betula nana_ L. (dwarf birch, Betulaceae) and _Salix glauca_ L. (grey willow, Salicaceae) in Southwest Greenland to assess how well such models can predict local-scale patterns.

 Data Description

Individual (presence-absence, abundance, maximum vegetative height) and community (species composition, maximum canopy height) shrub data for two fjords near Nuuk, Southwest Greenland. Also provided are corresponding downscaled climate data as well as calculated topographic and terrain wetness indicator variables.

 Nuup Kangerlua (Godthåbsfjord)

_Betula nana_ and _Salix glauca_ presence-absence, abundance, community species richness

 Kangerluarsunnguaq (Kobbefjord)

Shrub presence-absence, abundance, maximum vegetative height, community composition, maximum shrub canopy height

 Methods

 Field survey in Nuup Kangerlua

We conducted a stratified systematic plant survey along the length of Nuup Kangerlua (NK) fjord in Soutwesth Greenland (Fig. 1 in Chardon et al. 2022; following Nabe-Nielsen et al., 2017). At five distinct sites, we sampled along elevational gradients to collect data on presences, absences, abundance, and species composition of all woody species using a 0.7 x 0.7 m pin-point frame (Fig. 1e in Chardon et al. 2022). For model training, we converted these pin-point data to percent cover estimates based on the number of pins dropped (n = 25 per plot) and averaged them across the 119 spatio-climatic grids (see next section) corresponding to the plot locations (for details see Appendix S2 in Chardon et al. 2022).

 Field survey in Kangerluarsunnguaq

We conducted a random stratified plant survey in Kangerluarsunnguaq (K) fjord in Southwest Greenland. We used a preliminary Species Abundance Model trained with summed pin counts of _Betula nana_ in NK fjord (see Fig. S1.3 in Chardon et al. 2022) to stratify the ~ 27 x 17 km fjord landscape into low, medium, and high abundances classes. We randomly selected 90 x 90 m spatio-climatic grids to survey in each class for a total of 200 grids, ensuring that they were accessible by foot or boat (for details see Appendix S2 in Chardon et al. 2022). Within each grid, we sampled within three 1 m2 quadrats arranged in a randomly rotated equilateral triangle centered on the mid-point of the cell. We used a gridded sampling quadrat with 1% delineations (Fig. 1h in Chardon et al. 2022) to record woody species presences, absences, and composition, estimated percent cover, and measured maximum shrub species vegetatitve height. At every plot, we also visually scanned the area in a 20 m radius from the plot and recorded the presence of any additional shrub species to estimate grid-level species richness. As in NK fjord, we averaged these data at the grid level (for details see Appendix S2 in Chardon et al. 2022).

 Biotic variables

We calculated biotic microscale variables from the plant survey data collected in NK and K fjords. We calculated shrub species richness, diversity, and competition (i.e. sum of non-B. nana or non-S. glauca pin hits or percent cover). In K fjord, we also calculated canopy height as the community weighted mean (by abundance) of maximum vegetative shrub height.

 Climate variables

We computed high resolution temperature, precipitation, and insolation for local scale data for the study area by statistically downscaling climate time series (1982 - 2013) from the monthly CHELSA data (Karger et al. 2017). We downscaled these data from 30 arc sec (~ 400 m at the latitude of our study) to our target grid size of ~ 90 m with geographic weighted regression and using the MEaSUREs Greenland Ice Mapping Project (GIMP) Digital Elevation Model (DEM) v. 1 (Howat et al., 2014, 2015). We then calculated 30-year averages of the climate parameters: average summer (June – August) maximum temperature, yearly maximum temperature, yearly minimum temperature, temperature continentality (yearly max. - min. temperatures), cumulative Spring (March – May) precipitation, cumulative summer precipitation, and average summer incident solar radiation (henceforth, insolation) (for calculation details see Appendices S2, S3 in Chardon et al. 2022 and Appendix S2 in von Oppen et al. 2021).

 Topography and terrain wetness indicator variables

We calculated several topographic and terrain wetness indices at a local scale. We derived slope, aspect, and the SAGA wetness index (hereafter TWI; Boehner et al., 2002; Boehner and Selige, 2006) from the GIMP DEM. TWI is a measure of how ‘wet’ an area is, based on water drainage from the surrounding landscape. We also calculated the tasseled cap wetness component (hereafter TCW, Crist and Cicone 1984) from satellite images (for details see Appendices S2, S3 in Chardon et al. 2022) as an alternative measure of wetness.

 Computer code

Attached as zip file and available on GitLab (https://gitlab.com/nathaliechardon/gl_microclim)

 Third-party data

Data used to calculate climate, topography, and terrain wetness indicator variables are publicly available (see Appendix S2 in Chardon et al. 2022 for all data references).

accessible-shrub-forest

display_name: accessible-shrub-forest

arctic

display_name: arctic

climate

display_name: climate

field-data

display_name: field-data

sdm

display_name: sdm

validation

display_name: validation

en: Greenland shrubs and microclimate


en: forest soil nitrogen face picea-abies co2

en: Water analyses

en: Analyses of water, especially soil solution

en: Collection of soil solution

en: Soil solution collected by suction cups

en: Collection points

en: Collection points under the trees

en: Gross N mineralisation and nitrification

en: Gross rates of N mineralisation and nitrification (15N dilution)

en: Resin bags

en: Ammonium, nitrate and their 15N in resin bags

en: Soil C and N

en: Analyses of C, N and their stable isotopes in the soil, and soil pH

en: Data obtained in the free-air CO2 enrichment (FACE) experiment at Hofstetten, NW Switzerland, between 2009 and 2016. This dataset contains analyses of the soil solution throughout the experiment, especially for nitrate, as well as different analyses done at the end of the experiment: ammonium and nitrate captured by ion-exchange resin bags and extracted from soil cores, gross N mineralisation and nitrification measured by isotope dilution.

face

display_name: face

forest

display_name: forest

nitrogen

display_name: nitrogen

picea-abies

display_name: picea-abies

soil

display_name: soil

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Nitrogen availability under trees exposed to CO2 enrichment (FACE)