maintainer: Ana Beatriz Pierri Daunt

en: decision-making landscape-services sense-of-place literature-review landscape-ecology socio-ecological-system ecosystem-services planning pdfsearch multifunctionality landscape-planning resilience landscape-perception green-infrastructure

en: 6. Protocol

en: 1. Frequency of early concepts.

en: 4. Use of any additional concept.

en: 5. Planning steps.

en: 3. Use of any early concept.

en: 2. Frequency of additional concepts.

en:
Table of content: 1. Frequency of early concepts; 2. Frequency of additional concepts; 3. Use of any early concept; 4. Use of any additional concept, 5. Planning steps; 6. Protocol.

The present dataset is part of the published scientific paper entitled “Landscape ecological concepts in planning: review of recent developments” (Hersperger et al., 2021). The goal of this research was to review recent publications to assess the use of landscape ecological concepts in planning. Specifically, we address the following research questions: Q1. Landscape ecological concepts: What are they? How frequently are they mentioned in current research? Q2. How are landscape ecological concepts integrated in landscape planning?

We analysed all empirical and overview papers that have been published in four key academic journals in the field of landscape ecology and landscape planning in the years 2015–2019 (n = 1918). Four key journals in the field of landscape ecology were selected to conduct the analysis, respectively Landscape Ecology (LE), Landscape Online (LO), Current Landscape Ecology Reports (CLER), and Landscape and Urban Planning (LUP). The title, abstract and keywords of all papers were read in order to identify landscape ecological concepts. Then, all 1918 papers went through a keyword search to identify the use of early and additional concepts. We used the “pdfsearch” package in R programming language and searched for singular and plural forms and different variations of the concepts (see Supplementary material 1, Table A). As a result, we provided four outputs:

  1. Frequency of early concepts. This data provides the total number of times each article used each early concept (Q1). This data was used to produce the Figure 2a at the original publication.

  2. Frequency of additional concepts. This data provides the total number of times each article used each additional concept (Q1). This data was used to produce the Figure 2b at the original publication.

  3. Use of any early concept. This data provides the total number of times each article used any early concept (Q1).
This data was used to produce the Figure 3a at the original publication.

  4. Use of any additional concept. This data provides the total number of times each article used any additional concept (Q1). This data was used to produce the Figure 3b at the original publication.

To address the second question (Q2), the title, abstract and keywords of the papers included in our sample (n=1918 articles) were screened to identify papers that might show how landscape ecological concepts are integrated into planning. We selected 52 empirical papers (see Supplementary material – 4 Integration of landscape ecological concepts into planning), and we provided two outputs:

  5. Planning steps. This data provides the number of times landscape ecological concepts were addressed in each
planning steps in 52 empirical papers analysed in detail (Q2). This data was used to produce the Figure 4 at the
original publication.

  6. Protocol for assessing the integration of landscape ecological concepts into planning. To systematically collect the
data, we used this protocol which addressed the following questions: (a) which type of planning is addressed by the
paper? (b) to which planning level does the paper refer to? (c) which concepts are integrated in any of the planning
steps described above?

decision-making

display_name: decision-making

ecosystem-services

display_name: ecosystem-services

green-infrastructure

display_name: green-infrastructure

landscape-ecology

display_name: landscape-ecology

landscape-perception

display_name: landscape-perception

landscape-planning

display_name: landscape-planning

landscape-services

display_name: landscape-services

literature-review

display_name: literature-review

multifunctionality

display_name: multifunctionality

pdfsearch

display_name: pdfsearch

planning

display_name: planning

resilience

display_name: resilience

socio-ecological-system

display_name: socio-ecological-system

educ

en: Education, culture and sport

en: The usage of landscape ecological concepts in the planning literature


maintainer: Anita C. Risch

en: grassland native-plant herbivory weed-management non-native-plant

state: active

type: dataset

en: Data file native and non-native plant interactions in Australian grasslands

en:
taxa tab:	list and overview of all the recorded species

* family:                 family of the plant

* genus:                genus of the plant

* species:                plant species name

* origin:                indicates whether the plant is native to Australia or not (non-native)

* common name:	        common name of the plant species

* functional group:	        functional group of the plant species: forb, graminoid, fern, tree

* functional group detailed:	gives more detail about the type of graminoid and forb: legume, forb (non-leguminous),
                        grass, sedge, rush, fern, tree

* lifeform:                annual or perennial lifeform (species which can have both of these lifeforms where
                        considered as annuals)

plot tab:	list of species found in each plot and their cover (%)

* sampling.session:        provides information about the sampling time:
                        May2020 = data that was collected in May 2020
                        Nov2020 = data that was collected in November 2020

* farm.name:	            name of the farms where the sampling took place:
                        SF = farm of the Southern group
                        NF = farm of the Northern group
                        numbers 1-3 = randomly allocated to the Southern group of farms
                        numbers 4-6 = randomly allocated to the Northern group of farms

* site.type:	                KG: Kangaroo grass dominated site
                        ALG: ALG+KG site (Kangarooo grass and African lovegrass co-dominated site)

* plot.no:                plot number: 9-12

* scientific.name:	        scientific name of the plant species found in a certain plot

* functional group:	        indicates whether the species found is a tree, forb, graminoid or fern

* functional group detailed:	indicates whether the species found is a tree, legume, forb (non-leguminous),
                        grass, sedge, rush, fern

* lifeform:                specifies the lifeform of the species: annual or perennial lifeform
                        (species which can have both of these lifeforms where considered as annuals)

format: XLS

en:
This dataset contains all data, on which the following publication below is based.

Paper Citation:

_Schlierenzauer, C., Risch, A.C., Schütz, M., Firn, J. 2021. Non-native Eragrostis curvula reduces plant species diversity in pastures of South-eastern Australia even when native Themeda triandra remains co-dominant. Plants 10, 596._

Please cite this paper together with the citation for the datafile.

Study area
The study was conducted in the lowland grassy woodlands of the Bega Valley Region, which is located in the south-east corner of New South Wales, Australia. Embedded between the Pacific Ocean and the Australian Alps, the lowland grassy woodlands are mostly located on granitic substrates and reach elevations of roughly 500 m above sea level. Typically, these grassy woodlands receive less precipitation (mean annual precipitation between 700-1100 mm) compared to the more elevated areas that surround them (NSW Government - Office of Environment and Heritage 2017).
The vegetation is dominated by an open tree canopy layer consisting of Eucalyptus tereticornis Sm, Angophora floribunda Sm. (Sweet) and a range of other eucalypt species. Sometimes shrub or small trees are also present, whereas grasses and forbs form the ground-cover. In areas without intensive agricultural history, this layer is dominated by perennial, tussock grasses such as Themeda triandra Forssk, Microlaena stipoides R.Br (Weeping Grass), Eragrostis leptostachya Steud. (Paddock Lovegrass) and Echinopogon ovatus P.Beauv (Forest Hedgehog Grass). The remaining inter-tussock spaces are occupied by a diversity of growth-restricted grasses and herbaceous forbs (NSW - Department of Planing, Industries and Environment 2019; NSW Government - Office of Environment and Heritage 2017).
Clearing, pasture sowing, fertilizer application and livestock grazing resulted in a dramatic decrease in the extent of these natural woodlands, with less than five percent within conservation reserves and overall, with only about 20% of their original extent in New South Wales still existing (Tozer et al. 2010). The remaining areas outside of reserves are threatened by altered fire frequencies, habitat clearing, livestock grazing and especially by non-native plant invasion, particularly Eragrostis curvula (Schrad.) Nees. For this reason, the grassy woodlands are listed as an endangered ecological community in the NSW state legislation. Additionally, they are considered as critically endangered by the Commonwealth of Australia (Threatened Species Scientific Committee (TSSC) 2013).

Experimental design and sampling
The study was conducted on six farms and in each of them two sites were chosen, representing a paired design. One of the sites at each farm is dominated by native Themeda triandra, the other one co-dominated by non-native Eragrostis curvula and Themeda triandra. All farms are within a radius of approximately 10 km from the town Candelo. Three of the farms are located North (36°40’ to 36°42’ S and 149°38’ to 149°42’ E) and three of them are located South (36°51’ to 36°49’ S and 149°38’ to 149°42’ E) of Candelo.
Non-native herbivores (mainly cattle, sheep and rabbits) and native herbivorous marsupials (mainly kangaroos, wallabies and wombats) are present in the area of these sites. On each site, data was collected within four plots (each 1 x 1 m) in May and November 2020. All plant species found within a plot were recorded and their relative abundance was estimated.

References
NSW - Department of Planing, Industries and Environment. 2019. “Lowland Grassy Woodland in the South East Corner Bioregion - Endangered Ecological Community Listing.” https://www.environment.nsw.gov.au/topics/animals-and-plants/threatened-species/nsw-threatened-species-scientific-committee/determinations/final-determinations/2004-2007/lowland-grassy-woodland-south-east-corner-bioregion-endangered-ecological-community-l (February 18, 2021).
NSW Government - Office of Environment and Heritage. 2017. “Lowland Grassy Woodland in the South East Corner Bioregion - Profile.” https://www.environment.nsw.gov.au/threatenedSpeciesApp/profile.aspx?id=20070 (January 31, 2021).
Threatened Species Scientific Committee (TSSC). 2013. Environment Protection and Biodiversity Conservation Act 1999 (EPBC Act) Conservation Advice for Lowland Grassy Woodland in the South East Corner Bioregion. http://www.environment.gov.au/biodiversity/threatened/communities/pubs/82-conservation-advice.pdf.
Tozer, Mark et al. 2010. “Native Vegetation of Southeast NSW: A Revised Classification and Map for the Coast and Eastern Tablelands.” Cunninghamia : a journal of plant ecology for eastern Australia 11(3): 359–406.

grassland

display_name: grassland

herbivory

display_name: herbivory

native-plant

display_name: native-plant

non-native-plant

display_name: non-native-plant

weed-management

display_name: weed-management

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Native and no-native plant interactions in Australian grasslands


photogrammetric-drone-data-schurlialp

maintainer: Yves Bühler

title_for_slug: photogrammetric-drone-data-schurlialp

en: photogrammetry dsm wingtra orthophoto drone-data uav

en: Data Access

en:
- 10 cm DSM
- 10 cm HS
- 3 cm orthophoto
- original RGB images
- Agisoft Metashape Processing Report

All of the products are also available as a cloud optimized geotiff.

format: SERVICE

en: The data was collected on 16.04.2021 and on 28.05.2021 with a Wingtra Gen II and a Sony RX1 II RGB sensor to obtain snow depth and distribution data. Following the data collection, the data was processed with Agisoft Metashape. A 10cm DSM, a 10cm snow depth raster, a 3mm orthophoto and the original drone images are available for download.

drone-data

display_name: drone-data

dsm

display_name: dsm

orthophoto

display_name: orthophoto

photogrammetry

display_name: photogrammetry

uav

display_name: uav

wingtra

display_name: wingtra

en: Photogrammetric Drone Data Schürlialp


maintainer: EnviDat Support

en: swiss-forest-lab meteorology temperature long-term relative-humidity precipitation wind-speed meteo climate-change par

en: Site photo of the field station (NOF)

en: Site photo of the field station from the side.

mimetype: image/jpeg

en: Data plot of the forest station (NOB)

media_type: application/pdf

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

format: PDF

mimetype: application/pdf

en: Site aerial photo (Novaggio)

en: Site aerial photo from both Novaggio stations. Source: Google. 2016. Site aerial photo from both Novaggio stations. Retrieved November 15, 2016, from https://www.google.ch/maps

en: Site photo of the forest station (NOB)

en: Site photo of the forest station from the side.

en: Forest station data (NOB)

media_type: text/csv

en: Data file.

format: CSV

mimetype: text/csv

en: Field station data (NOF)

en: Data plot of the field station (NOF)

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Novaggio in Switzerland where one station is located within a natural deciduous forest stand (NOB) with Turkey oak (_Quercus cerris_; 70 yrs), sweet chestnut (_Castanea sativa_; 90 yrs) and silver birch (_Betula pendula_; 70 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, NOF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Novaggio is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Novaggio, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1996 onwards


maintainer: Ariel Bergamini

en: biomass bryophytes functional-traits fungicide nitrogen moss pandiv species-richness grassland biodiversity-experiment

en: main data as used in Lin et al. 2025

en:
This dataset was used to analyse effects of different biodiversity and functional group treatments, fertilizer and fungicide applications as well as weeding of vascular plants on the species richness and species composition of bryophytes for the following publication: Lin M., Bergamini A., Pichon N.A., Allan E, Boch S. 2025. Nitrogen enrichment and vascular plant richness loss reduce bryophyte richness. Scientific Reports.
In this study we surveyed 96 of 216 2 m x 2 m experimental plots of the PaNDiv experiment, a large grassland field experiment in the Swiss lowlands (Pichon et al. 2020). In the PaNDiv experiment four experimental treatments were applied in a full-factorial design manipulating: (1) the nitrogen availability (through fertilization), (2) the presence of fungal pathogens (through fungicide application), (3) the functional composition of the vascular plant community (represented here by community-weighted mean (CWM) SLA), and (4) the vascular plant richness (sowing of either 1, 4, 8 or 20 species). To maintain the original sown vascular plant species richness and composition, one part of each plot (1.5 m × 2 m) was weeded, while the other part has been left unweeded since the beginning of the experiment (0.5 m × 2 m).
On each plot we surveyed two subplots, the unweeded subplot and a weeded subplot of the same area (0.5 m × 2 m). On each subplot we established a complete list of all bryophyte species together with an estimate of their cover.
The provided excel file contains three sheets:
1.	A sheet with raw species lists of all plots surveyed together with information on all treatments and an estimation of the percentage cover of vascular plants in a summer campaign in August 2022. Cover of bryophytes was estimated for each species in percent.
2.	A sheet with a list of all bryophyte species with its growth form (acroarpous/pleurocarpous)
3.	A sheet with some explantations
By means of the provided R code and the data in the excel file, all analyses can be repeated.
More details to the data sampled can be found in Lin et al (2025).

biodiversity-experiment

display_name: biodiversity-experiment

biomass

display_name: biomass

bryophytes

display_name: bryophytes

functional-traits

display_name: functional-traits

fungicide

display_name: fungicide

grassland

display_name: grassland

moss

display_name: moss

nitrogen

display_name: nitrogen

pandiv

display_name: pandiv

species-richness

display_name: species-richness

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data on bryophyte diversity and treatment factors in the PaNDiv experiment


en: land-use-change digital-zoning-plans spatial-planning land-use-simulations land-use-transformations

en: Legend simulated maps

en:
Table of Content: 1. General context of the data set "LUSzoning”; 2. Background and aims of the study using the data set LUSzoning; 3. The data set LUSzoning.
1. General context of the data set "LUSzoning".
The data set "LUSzoning" stands for Land-use simulations integrating zoning regulations in Spanish functional urban areas. The data set has been generated as part of the CONCUR research project (https://www.wsl.ch/en/projects/concur.html) led by Dr. Anna M. Hersperger and funded by the Swiss National Science Foundation (ERC TBS Consolidator Grant (ID: BSCGIO 157789) for the period 2016-2021. The CONCUR research project is interdisciplinary and aims to develop a scientific basis for adequately integrating spatial policies (in this case, digital zoning plans) into quantitative land-change modelling approaches at the urban regional level.
2.	Background and aims of the study using the data set “LUSzoning”.
As part of the CONCUR project, a specific task was to integrate planning spatial policies in land-change modelling. Planning can be implemented in modelling using either hard or gradual restrictions. Different studies have addressed the inclusion of spatial planning policies in land-use change modelling. However, the integration of zoning constraints is generally established as hard or Boolean-based restrictions (e.g., whether urban development is allowed or not), while not accounting for the spatial heterogeneity or gradual characteristics within planning zones (e.g., whether planning regulations allow low, medium or high urban density), though these could improve real patterns simulations in urban areas. We assume Spanish General Zoning plans were suitable to explore the integration of planning into land-change modelling as soft constrains because they define land-use intensities in the buildable zoning areas. In light of the above considerations, the overall aim of the study was to model urban land-use changes using a multi-scenario approach that integrates digitized zoning plans for the Functional Urban Areas (FUAs) of Madrid, Barcelona, Valencia, and Zaragoza. The following specific objectives were addressed: i) to analyse the role of planning by defining three future scenarios that integrate digitized zoning plans and one scenario that assumes almost no planning intervention; ii) to introduce zoning constraints that reflect different degrees of urban densities; iii) to generate a transferable spatially-explicit modelling framework to integrate planning into land-use change simulations.
Four future land-use demands scenarios were defined for the FUAs. Storylines were created considering probable development scenarios related to zoning plans, current Spanish legislation and sustainability goals defined along two axes: a high market-oriented vs. high planning-intervention axis, and an axis of short-term economic growth vs. long-term sustainable growth. The sustainable development scenario (S1) is characterized by low gross floor area (GFA) growth that is limited to areas that are currently under development according to zoning plans. The business-as-usual scenario (S2) is characterized by medium GFA growth in the range of on-going trends. The strong development scenario (S3) is characterized by high GFA growth rates. Growth is restricted to buildable areas without urbanization project designated in zoning plans. The unrestricted development scenario (S4) prioritizes a high degree of market liberalization characterized by high GFA growth that surpasses population demands. S4 follows a rapid economic growth pattern with almost no planning intervention.
3.	 The data set “LUSzoning”.
The dataset includes 16 .asc raster layers providing the simulated land-uses under four defined scenarios for Barcelona, Madrid, Valencia and Zaragoza Functional Urban Areas (FUAs) for 2030. The simulated raster layers were created using CLUMondo simulation framework and have a spatial resolution of 30m. The .asc layers name include the name of the FUA and scenario number. For example, the output from simulating the urban growth for the city of Zaragoza under Scenario 2 is named “Zaragoza_S2.tif”. Furthermore, a .txt file named “Legend.txt” includes the numeric value of the land-use and the category of land-use that represents to interpret the .asc raster layers. The name of the land-use classes is a reclassification of the Urban Atlas 2012 land-use classes within the four Spanish FUAs analyzed.

digital-zoning-plans

display_name: digital-zoning-plans

land-use-change

display_name: land-use-change

land-use-simulations

display_name: land-use-simulations

land-use-transformations

display_name: land-use-transformations

spatial-planning

display_name: spatial-planning

en: LUSzoning: Land-use simulations integrating zoning regulations in Spanish functional urban areas


en: switzerland edna insect minion drone ins16s

en: Data access

en: Please use cyberduck to download

en:
Traditional methods of biodiversity monitoring are often logistically challenging, time-consuming, require experienced experts on species identification and sometimes include destruction of the targeted specimens. Here, we investigated a non-invasive approach of combining the use of drones and environmental DNA (eDNA) to monitor insect biodiversity on vegetation.
We aimed to assess the efficiency of this novel method in capturing insect diversity and comparing insect composition across different vegetation types (grassland, shrub, and forest) in Switzerland. A commercial, off-the-shelf drone was equipped with a specialised probe that autonomously swabbed vegetation and collected eDNA. Then, samples were processed using rapid third-generation Oxford Nanopore sequencing. The obtained data were analysed for insect diversity, comparing taxonomic richness, evenness and community composition across the three habitat types using statistical techniques. Sequencing of the samples yielded 76 hexapods taxa, revealing an insect community with notable differences in taxonomic richness but not in evenness across grassland, shrub, and forest habitats.
Our study demonstrates the potential of drone-based sampling integrated with eDNA and nanopore sequencing for biodiversity monitoring, offering a non-destructive method for detecting insect occurrence on plant surfaces. Integrating robotics and eDNA technology provides a promising solution for fast, large-scale, non-invasive biodiversity monitoring, potentially improving conservation efforts and ecosystem management.

drone

display_name: drone

edna

display_name: edna

insect

display_name: insect

minion

display_name: minion

switzerland

display_name: switzerland

en: Robot-aided measurement of insect diversity on vegetation using environmental DNA


disdrometer-data-davos-wolfgang

title_for_slug: disdrometer-data-davos-wolfgang

en: fall-velocity precipitation raclets davos disdrometer

en: Disdrometer Data Davos Wolfgang

media_type: application/zip

en:
The zip folder contains one netCDF file per day for Davos Wolfgang from February 8 to March 19 2019 with a temporal resolution of 30 seconds (time in UTC) and includes:

- characteristics of hydrometeors (e.g. diameter, fall velocity, amount per diameter class,...)
- precipitation rate
- radar reflectivity
- visibility range
- weather codes
- instrument performance

format: ZIP

mimetype: application/zip

en: The dataset contains information on precipitation amount and type for Davos Wolfgang (LON: 9.853594, LAT: 46.835577) from February 8 to March 19 2019. It includes: characteristics of hydrometeors (e.g. diameter, fall velocity, amount per diameter class,...), precipitation rate, radar reflectivity, visibility range, weather codes and instrument performance.

davos

display_name: davos

disdrometer

display_name: disdrometer

fall-velocity

display_name: fall-velocity

precipitation

display_name: precipitation

raclets

display_name: raclets


en: functional-taxonomic-groups biodiversity functional-taxonomic-group photobiont moss lichen-growth-form elevational-gradient bryophyte-life-strategy climate-change lichen-growthform climate-change-impact bryophyte liverwort madeira-island endemic disturbance lichen endemic-species

en: MadCrypto – Bryophyte and macrolichen diversity in laurel forests of Madeira

en:
This dataset includes species lists of bryophytes and macrolichens (presence/absence) sampled on the forest floor and on trees in disturbed and undisturbed plots along elevation gradients in the laurel forests of Madeira island. It also contains species specific information (bryophytes: red list status, endemic status, taxonomic group, life strategy; macrolichens: photobiont type, growth form) as well as plot information (Plot_ID, sampling date, coordinates, elevation a.s.l. (m), disturbance type, sampled host tree species).

The dataset was used for the paper
Boch S, Martins A, Ruas S, Fontinha S, Carvalho P, Reis F, Bergamini A, Sim-Sim M (2019) Bryophyte and macrolichen diversity show contrasting elevation relationships and are negatively affected by disturbances in laurel forests of Madeira island. Journal of Vegetation Science.

en:
This dataset includes species lists of bryophytes and macrolichens (presence/absence) sampled on the forest floor and on trees in disturbed and undisturbed plots along elevation gradients in the laurel forests of Madeira island. It also contains species specific information (bryophytes: red list status, endemic status, taxonomic group, life strategy; macrolichens: photobiont type, growth form) as well as plot information (Plot_ID, sampling date, coordinates, elevation a.s.l. (m), disturbance type, sampled host tree species).

The dataset was used for the paper
Boch S, Martins A, Ruas S, Fontinha S, Carvalho P, Reis F, Bergamini A, Sim-Sim M (2019) Bryophyte and macrolichen diversity show contrasting elevation relationships and are negatively affected by disturbances in laurel forests of Madeira island. Journal of Vegetation Science 30: 1122–1133.

The excel file contains 5 sheets:
1) Plot information
2) Bryophyte data with species specific information, separated per substrate
3) Macrolichen data with species specific information, separated per substrate
4) Bryophyte data with species specific information (plot level data). Species lists of the two substrates were merged; if one substrate in a plot hosted a species identified only to genus level (genus spec.) but the second investigated substrate hosted an identified species of the same genus, we removed the genus spec. entry in the particular plot. The species list of sheet 2 and 4 might therefore differ slightly.
5) Macrolichen data with species specific information (plot level data). Species lists of the two substrates were merged; if one substrate in a plot hosted a species identified only to genus level (genus spec.) but the second investigated substrate hosted an identified species of the same genus, we removed the genus spec. entry in the particular plot. The species list of sheet 3 and 5 might therefore differ slightly.

biodiversity

display_name: biodiversity

bryophyte

display_name: bryophyte

bryophyte-life-strategy

display_name: bryophyte-life-strategy

climate-change

display_name: climate-change

climate-change-impact

display_name: climate-change-impact

disturbance

display_name: disturbance

elevational-gradient

display_name: elevational-gradient

endemic

display_name: endemic

endemic-species

display_name: endemic-species

functional-taxonomic-group

display_name: functional-taxonomic-group

functional-taxonomic-groups

display_name: functional-taxonomic-groups

lichen

display_name: lichen

lichen-growth-form

display_name: lichen-growth-form

lichen-growthform

display_name: lichen-growthform

liverwort

display_name: liverwort

madeira-island

display_name: madeira-island

moss

display_name: moss

photobiont

display_name: photobiont

educ

en: Education, culture and sport


maintainer: Matthias Haeni

en: precipitation par climate-change long-term temperature meteo swiss-forest-lab meteorology relative-humidity wind-speed

en: Site aerial photo (Jussy)

en: Site aerial photo from both Jussy stations. Source: Google. 2016. Site aerial photo from both Jussy stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Data plot of the field station (JUF)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Site photo of the field station (JUF)

en: Site photo of the field station from the side.

en: Site photo of the forest station (JUB)

en: Site photo of the forest station from the side.

en: Data file.

en: Forest station data (JUB)

en: Data plot of the forest station (JUB)

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Jussy in Switzerland where one station is located within a natural broad-leaved forest stand (JUB) with sessile oak (_Quercus petrea_; 90 yrs), aspen (_Populus tremula_; 60 yrs) and European hornbeam (_Carpinus betulus_; 60 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, JUF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Jussy is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Jussy, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


maintainer: Joan Casanelles Abella

en: tartu poznan cavity-nesting-bees antwerp paris osmia-cornuta zurich trap-nest osmia-bicornis hylaeus-communis plant-pollinator-interactions dna-metabarcoding urban-ecology chelostoma-florisomne

en: Information on the study sites

en: For each site, IDs, city, coordinates, structure where trapnest was attahced and height of the trapnest is provided

en: Larval food composition

en: Explanation data variables

en: Urbanization poses threats and opportunities for the biodiversity of wild bees. A main gap relates to the food preferences of wild bees in urban ecosystems, which usually harbour large numbers of plant species, particularly at the larval stage. This data sets describes the larval food of four wild bee species (i.e. Chelostoma florisomne, Hylaeus communis, Osmica bicornis and Osmia cornuta) and three genera (i.e. Chelostoma sp., Hylaeus sp, and Osmia sp.) common in urban areas in five different European cities (i.e. Antwerp, Paris, Poznan, Tartu and Zurich). This data results from a European-level study aimed at understanding the effects of urbanization on biodiversity across different cities and citiscapes, and a Swiss project aimed at understanding the effects of urban ecosystems in wild bee feeding behaviour. Wild bees were sampled using standardized trap-nests in 80 sites (32 in Zurich and 12 in each of the remaining cities), selected following a double gradient of available habitat at local and landscape scales. Larval pollen was obtained from the bee nests and identified using DNA metabarconding. The data provides the plant composition at the species or genus level of the different bee nests of the studied species in the studied sites of the five European cities. For Hylaeus communis, this is the first study in reporting larval food composition.

antwerp

display_name: antwerp

cavity-nesting-bees

display_name: cavity-nesting-bees

chelostoma-florisomne

display_name: chelostoma-florisomne

dna-metabarcoding

display_name: dna-metabarcoding

hylaeus-communis

display_name: hylaeus-communis

osmia-bicornis

display_name: osmia-bicornis

osmia-cornuta

display_name: osmia-cornuta

paris

display_name: paris

plant-pollinator-interactions

display_name: plant-pollinator-interactions

poznan

display_name: poznan

tartu

display_name: tartu

trap-nest

display_name: trap-nest

urban-ecology

display_name: urban-ecology

zurich

display_name: zurich

educ

en: Education, culture and sport

en: Larval food composition of four wild bee species in five European cities


maintainer: Camille Albouy

en: atlantic-ocean barcoding teleo-primers 12s mitochondrial-dna actinopterygii environmental-dna

en: This file contains the 12s mitochondrial sequences for the Atlantic fishes collected on a French scientific survey (Evhoe) for stock assessment.

en: This file contains the metadata associated with each scientific survey

en: This file contains the Teleo Barcode for the Atlantic fishes collected during a French scientific survey (Evhoe) for stock assessment.

en: This file contains the metadata associated with each 12 s mitochondrial sequence.

en:
Mitochondrial tree based on the 12s sequences obtained for altantic fish.
This data represent the maximum likelihood phylogenetic tree allowing to assess 1) the clustering of the different sequences generated in
this study and their closest sequences recovered through a MegaBLAST on GenBank, 2) the robustness of the clades and 3) the
phylogenetic dissimilarities through the branch length of the tree among the different sequences. This tree was built with IQtree2
using the best substitution model found by modelFinder. The robustness of the node was evaluated using 1000 ultra-fast bootstrap
(node information indicated on the right of the /) and SH-aLRT procedures (node information indicated on the left of the /), using a hillclimbing nearest neighbor interchange (NNI) search to reduce the risk of overestimating branch supports with ultra-fast Bootstrap
caused by too severe model violations.

en:
The global biodiversity crisis driven by anthropogenic pressures significantly threatens marine ecosystems functioning. The rate of climate change and the impacts of anthropogenic pressures outpacing the capabilities of our observation tools, stresses the need to develop new methods to assess these rapid modifications. Environmental DNA (eDNA; DNA traces released by organisms) metabarcoding has emerged as a non-invasive method that has been widely developed over the last decade. Thanks to a large spatio-temporal coverage, high detection of rare species and its time and cost effectiveness, eDNA metabarcoding represents a promising biomonitoring tool. However, capturing fish diversity using eDNA requires a high-quality genetic reference database, which we are currently still lacking. For the South European Atlantic shelf area, we estimated that only 41% of the fish species present were recorded in the available eDNA reference databases. Improving reference databases can notably rely on opportunistic sampling enabling the reporting of sequences for new species. Therefore, the data provided here consists of barcoding 95 species of ray-finned and cartilaginous fishes over the 12S mitochondrial DNA gene. We generated 168 12S barcodes from fishes that were sampled in the Bay of Biscay (Northeast Atlantic, France) between 2017 and 2019. We also provided the “Teleo” barcode associated with a specific 12S region for each individual. In addition to the sequences, we provided for each individual the taxonomy, the details associated with the barcode (Genbank accession number, chromatograms), a photograph, as well as 5 ecomorphological measures and 11 life-history traits. These traits document several functions such as dispersion, diet, habitat use, and position in the food web. Furthermore, we provided the metadata of each sampling site (date, station, sampling hour, gear, latitude, longitude, depth) and environmental variables measured in situ (conductivity, salinity, water temperature, water density, air temperature).
This data set is highly valuable to improve the Northeast Atlantic eDNA genetic database, thus helping to better understand the effects of environmental forcing in the Bay of Biscay, a transition zone housing mixed assemblages of boreal, temperate and subtropical fish species susceptible to display variability in functional traits to adapt to changing conditions.

actinopterygii

display_name: actinopterygii

atlantic-ocean

display_name: atlantic-ocean

barcoding

display_name: barcoding

environmental-dna

display_name: environmental-dna

mitochondrial-dna

display_name: mitochondrial-dna

teleo-primers

display_name: teleo-primers

en: ATLFISHREF A 12S mitochondrial reference dataset for metabarcoding Atlantic Fishes frequently caught during scientific surveys in the Bay of Biscay


maintainer: Gesa von Hirschheydt

en: monitoring lichens swisslichens detection-probability bayesian-inference observer-error detectability occupancy-model biodiversity inter-observer-difference cryptogams sessile-species

en: Repository containing the full data, code, README and workflow files.

en:
The available lichen data consists of detection/nondetection data (1/0) of 373 tree-inhabiting (*corticolous*) lichen species from 416 plots surveyed 1-2 times. The lichen data were originally collected for the purpose of the Red List of epiphytic lichen species in Switzerland ([Scheidegger *et al.* 2002](https://www.bafu.admin.ch/bafu/de/home/themen/biodiversitaet/publikationen-studien/publikationen/rote-liste-gefaehrdete-arten-baum-erdbewohnende-flechten.html)), but updated to recent nomenclature for the purpose of this study.
This repository contains all the supporting data and R code for the paper:
von Hirschheydt, G., Kéry, M., Ekman, S., Stofer, S., Dietrich, M., Keller, C., Scheidegger, C. (2024) **Occupancy model reveals limited detectability of lichens in a standardised large-scale monitoring**. *Journal of Vegetation Science*.
Results and figures presented in the manuscript should be reproducible (with small differences in the latter digits due to stochasticity of the MCMC sampler) with the provided data and code.
The downloadable `.zip` folder has the following structure:
* `0_data/`
* `1_code/`
* `2_output/`
* `lichen_detectability.Rproj`
* `README.txt`
* `workflow.html`
- `workflow.Rmd`

The main folder and the three subordinate folders each have their own `README*.txt` file. These describe each available file in detail and should be consulted prior to using the data or running any code. The file `lichen_detectability.Rproj` stores the information about the R project. The user can open the project by clicking/double-clicking on this file which will automatically define the repository as working directory for the R session. If the user does not use RStudio/Posit, they may have to set the working directory manually to the stored location in the R files. The files `workflow.*` guide the user through the analysis (`1_code/*.R`) in the correct order so that they can:
- bundle the cleaned data into a data list readable for JAGS
- fit the multi-species occupancy model to the data and store the output
- assess the goodness-of-fit of the model to the data
- conduct a prior sensitivity analysis with 2 additional sets of priors
- extract the summary statistics reported in the manuscript and supplementary materials
- generate the figures shown in the manuscript and supplementary materials

bayesian-inference

display_name: bayesian-inference

biodiversity

display_name: biodiversity

cryptogams

display_name: cryptogams

detectability

display_name: detectability

detection-probability

display_name: detection-probability

inter-observer-difference

display_name: inter-observer-difference

lichens

display_name: lichens

monitoring

display_name: monitoring

observer-error

display_name: observer-error

occupancy-model

display_name: occupancy-model

sessile-species

display_name: sessile-species

swisslichens

display_name: swisslichens

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Repeated detection-nondetection data of corticolous lichens from a standardised monitoring across Switzerland


historical-vegetation-height-model-nfi

maintainer: Mauro Marty

title_for_slug: historical-vegetation-height-model-nfi

en: nfi dsm historical forest vhm photogrammetry

en: 1990-1998 Vegetation Height Model

format: GeoTIFF

en: 1998-2006 Vegetation Height Model

en: 1979-1985 Vegetation Height Model

en: 1985-1991 Vegetation Height Model

media_type: text/plain

en: Description of available data

format: TXT

en:
The main datasets available are 4 nationwide **Digital Surface Models (DSMs)** and corresponding **Vegetation Height Models (VHMs)** with a spatial resolution of 1 m.
The Vegetation Height Models are calculated by subtraction of a Digital Terrain Model (swissAlti3d version 2017, swisstopo) from the generated DSMs. DSMs were derived by image matching of **scanned historical images** (panchromatic 8-bit) acquired with a RC10 frame camera, in the context of the swisswide image acquisition campaigns of swisstopo.
Nationwide products could be generated for the **four epochs**
 1979-1985 / 1985-1991 / 1990-1998 / 1998-2006.
Additional information about successful image matching vs. interpolation of pixels and about the year of image acquisition are available in the corresponding files (**matched_area_xxxx_xxxx_binay.tif** and **meta_acquisition_year_xxxx_xxxx.json**, respectively).
To separate vegetation from non-vegetation areas a mask derived from a combination of information of the Topographic landscape model - TLM (swisstopo) and a NDVI layer was used and is supplied as **"TLM_mask.tif"**
Due to the occurrence of unrealistic vegetation height values caused by the failure of the image matching process (mainly overexposed images and clouds or very steep rocky terrain), pixel values > 60 m were set to NoData and < 0 m to 0.
All datasets are available in the Reference System **LV95 (EPSG: 2056) LN02 (EPSG: 5728)** and share the common **extent definition** (xmin ymin xmax ymax): 2480000 1070000 2840000 1300000

dsm

display_name: dsm

forest

display_name: forest

historical

display_name: historical

nfi

display_name: nfi

photogrammetry

display_name: photogrammetry

vhm

display_name: vhm

en: Historical Vegetation Height Model NFI


maintainer: Robert Pazúr

en: machine-learning cropland habitat phenology sentinel-2 remote-sensing vegetation-indices switzerland grassland agriculture

en: GEE (Google Earth Engine) script (JavaScript) to derived the output map  (v1.0)

en: !!! Please check out the newer version in the repository !!! The code used in Google Earth Engine to derive the cropland, grassland and shrubland map of Switzerland

en: Cropland, grassland, and shrubland map of Switzerland (v1.0)

media_type: image/tiff

en: !!! Please check out the newer version in this repository !!! (1) cropland; (2) grassland; (3) shrubland; other LC classes are masked out from the map

format: TIFF

en: Mask of unsealed surfaces of Switzerland based on 3 years Sentinel-2 NDVI 95th percentile threshold value: 0.6  (v1.0)

en:
!!! Please check out the newer version in the repository !!!
Mask of unsealed surfaces of Switzerland based on 3 years (2017-2019) Sentinel-2 NDVI 95th percentile threshold value: 0.6

en: GEE (Google Earth Engine) script (JavaScript) to derived the output map  (v1.5)

en: The code used in Google Earth Engine to derive the cropland, grassland and shrubland map of Switzerland. Compare to the previous version the newer version includes the shadow masking procedure which might be important in the mountainous areas.

en: (current version) Cropland, grassland, and shrubland map of Switzerland (v.1.5)

en: Cropland and grassland map of Switzerland  (v.1.0)

en: !!! Please check out the newer version in this repository !!! (1) cropland; (2) grassland; other LC classes are masked out from the map

en: Mask of unsealed surfaces of Switzerland based on 3 years Sentinel-2 NDVI 95th percentile threshold value: 0.7 (v1.0)

en: !!! Please check out the newer version in this repository !!! Assuming that sealed surfaces have little or no phenological response we calculated a mask of unsealed surfaces based on the 3 years (2017-2019) Sentinel-2 NDVI 95th percentile threshold value: 0.7.

en: (current version) Mask of unsealed surfaces of Switzerland based on 3 years Sentinel-2 NDVI 95th percentile threshold value: 0.6 (v1.5)

en: Assuming that sealed surfaces have little or no phenological response we calculated a mask of unsealed surfaces based on the 3 years (2017-2019) Sentinel-2 NDVI 95th percentile threshold value: 0.6.

en: (current version) Cropland and grassland map of Switzerland (v.1.5)

en: (current version) Mask of unsealed surfaces of Switzerland based on 3 years Sentinel-2 NDVI 95th percentile threshold value: 0.7 (v1.5)

en: We developed a map of cropland and grassland allocation for Switzerland based on several indices dominantly derived from Sentinel-2 satellite imagery captured over multiple growing seasons. The classification model was trained based on parcel-based data derived from landholder reporting. The mapping was conducted on Google Earth Engine platform using random forest classifier. Areas of high vegetation, shrubland, sealed surface and non-vegetated areas were masked out from the country-wide map. The resulting map has high accuracy in lowlands as well as mountainous areas.

agriculture

display_name: agriculture

cropland

display_name: cropland

grassland

display_name: grassland

habitat

display_name: habitat

machine-learning

display_name: machine-learning

phenology

display_name: phenology

remote-sensing

display_name: remote-sensing

switzerland

display_name: switzerland

vegetation-indices

display_name: vegetation-indices

educ

en: Education, culture and sport

en: Cropland and grassland map of Switzerland based on Sentinel-2 data


maintainer: Tobias Wechsler

en: gis integral-water-management decision-making hydropower ecosystem-protection

en: Indicators

en: The indicators capture supporting ecosystem functions.

format: SHP

en:
 A spatial dataset and tool to simultaneously assess hydropower potential and ecological potential of the Swiss river network (Version 2016)

 Introduction
The steadily growing demand for energy and the simultaneous pursuit of decarbonisation are increasing interest in the expansion of renewable energies worldwide. In Switzerland, various funding projects have been launched to promote technologies in the field of renewable energies and their application as quickly as possible. With the introduction of a funding instrument in 2009, the number of projects submitted to produce renewable energies increased rapidly. The applications for small hydropower plants (≤ 10 MW) were correspondingly numerous. However, the assessment of the environmental impact and its comparison with hydropower importance is still not standardized.
To provide a basis for decision-making, a methodology was developed to determine the overall hydropower potential of a region. A detailed assessment of each river reach, and the systematic and holistic assessment of small hydropower projects at a regional scale are combined here. The assessment of a river reach is conducted at the river space (i.e., the river and adjacent areas) and at the surrounding landscape level. The HYDROpot_integral methodology was developed as part of Carol Hemund's dissertation (2012) at the University of Bern. It allows the evaluation of river reaches holistically, regarding ecological, social, economic and cultural criteria. As a second part of the overall project, the theoretical hydropower (or hydraulic) potential was calculated for the entire river network, which complemnets the spatial assessment. In particular, it is possible to classify river reaches into those that are more suitable for hydropower production (=”use”) and those that are more suitable for protection.

 Material and method
The HYDROpot_Integral method was developed and tested on the basis of cantonal and national data (Hirschi et al. 2013). The method relies on 73 geodata sets. This holistic assessment is the key element of the entire assessment procedure. Its aim is to quantify the importance of the ecosystem functions in terms of services. The river network (GWN07) is divided into reaches of about 450m and for each reach two study units are defined. The river space (RS) records the ecosystem functions of the water body and the nearby riparian area. The length of the RS is 315 m on average in Switzerland and a maximum of 450 m, whereas the width is based on the FOEN definition (BWG 2001: 18f) and varies between 7-107 m. The surrounding landscape (SLS) is the second survey unit that records the ecosystem functions of the surrounding area over a range of 21 m to 321 m. The SLS is calculated over three times the RS width. The length of the SLS is identical to the length of the RS. The ecosystem functions are divided into three types: regulating (service A), cultural (service B) and provisioning (service C) functions. Accordingly, the assessment of the functions is divided into three parts and three values are assigned to each river reach. The more functions there are and the greater their performance, the higher these values are and the more important the corresponding functions are. Hence, these values quantify the importance of the ecosystem functions and the ecological, cultural and economic ecosystem services of each river reach. The concatenation of ecosystem services results in a value (ABC) that can occur in 125 different versions due to the chosen five-level value scale; i.e. each digit of the three-digit number sequence can be assigned a value between 1 and 5. Each of the 125 combinations, and thus each river reach, has its own characteristics determined by the assessments of the three function types. To record the suitability, the combinations are ranked according to their ecological, cultural and economic ecosystem services. These rules mean that the combination that is most suitable for hydropower production at minimum cost in terms of ecological and cultural ecosystem services and has a high economic potential is ranked first; rank 125 indicates the highest ecological and cultural ecosystem services and the lowest economic services and is therefore most suitable for protection. A river reach that is excluded from hydropower use due to legislation, a so-called priority reach, is given rank 126 from the outset and specially marked. A more detailed description of the methods can be found in Hirschi et al. 2013 [Link]. The dataset presented here presents the latest state of the HYDROpot_integral methodology applied at the national level. Only national data that is easily accessible was used in the preparation of the dataset. The cantonal data, such as renaturation and revitalization, would have to be requested by each canton individually and was excluded here. The nationwide value synthesis was made with R.
A list of data sources can be found here [link to text file]
A list of all parameters can be downloaded here [link to PDF and text files]

 Dataset description
Data is presented as a single shapefile. It contains the river network and all assessment results obtained with HYDROpot_Integral.

 Changes in the methodology compared to the original method (Hirschi et. al 2013)

 * RS_A11 Ecomorphology: recorded for the whole of Switzerland and zero values equated with NA;
individual cantons such as Zug and St. Gallen have no mapped values according to the modular
concept of the federal government, Valais and Graubünden only the main valleys, Ticino and Fribourg not
completely (BAFU 2009).
 * RS_A14 Renaturation and revitalization data: not centrally available at the time of data collection.
centrally available, therefore values in GR were equated with NA.
 * RS_A15 Dilution ratio at wastewater treatment plants (WWTPs) for discharges: Zero values
equal to NA.
 * RS_A20 Water flow: use WASTA (2013) with hydroelectric power plants (> 300 kW) under
Federal control and dams serving hydroelectricity (Dam, as of 2013).
 * RS_C05 Synoptic hazard maps: are cantonally managed at the time of data collection,
Values in GR are marked with a 5 so that the systematics in the decision tree is not affected.
is affected.
 * Water quality (RS_A15, RS_A16, RS_A17, RS_A18, RS_A19): for the evaluation of the function type.
A Nature, it is important whether the median of the five values is less than or equal to 3 in total. This
evaluation is based on the decision tree for evaluating GR (Hirschi et al. 2013:22).
Therefore, an evaluation of the station data is made where critical and possible river segments
with poor quality (median less than 3) exist. Only two longer and one short
sections in Switzerland receive a lower median than 3 for water quality.
 * SLS_B06 Visibility: For 99 percent of the river segments (30,733 of 31,062) in the canton of
Bern (2015 reduced version), the landscape area is considered to be visible. Due to this high number
of sections, a large number of viewpoints in the layer of Swisstopo and
the computation time and computability in ArcGIS, the landscape area is classified as generally viewable
(equal to 1).
16 Method
Additional indicators were added (see Appendix B.2):
 * SLS_A21 Dissection
 * SLS_A22 Forest areas
 * SLS_B03 Hiking trails
 * SLS_B10 Residential and vacation homes
 * SLS_B11 Tourist infrastructure
 * SLS_C01 Landfill
 * SLS_C03 Infrastructure
 * SLS_C05 Industry
 * SLS_C06 Agricultural land
Not to be added, although present to some extent:
 * SLS_B06 Cultural assets of national importance: here, too, the calculability of the visibility analysis is
for the whole of Switzerland is limited
 * SLS_A15 Legally binding protection and land use planning: the individual river sections are not
clearly designated, i.e. no geodata exist
The following data are also not supplemented, as they are cantonal data:
 * SLS_A10 Cantonal nature reserves
 * SLS_A16 Forest reserves
 * SLS_A17 Cantonal inventories and contractually protected areas

decision-making

display_name: decision-making

ecosystem-protection

display_name: ecosystem-protection

gis

display_name: gis

hydropower

display_name: hydropower

integral-water-management

display_name: integral-water-management

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: drosophila-suzukii nuclear-microsatellite-markers simple-sequence-repeats trichopria-drosophilae biological-control switzerland population-genetics multilocus-genotypes

en: Table comprising all pertinent information for multiplex PCRs of species-specific nuclear microsatellite makers for Trichopria drosophilae, comprising all 21 newly developed markers, details on full sequences with GenBank accession numbers, primer sequences (including labeling and pig-tails), and repeat motives. PCRs with respective annealing temperatures (AnnealingTemp) refer to Type-It Multiplex PCR Kit (Qiagen, Hilden, Germany).

en: Multilocus genotypes (biallelic coding for 21 nuclear microsatellites) of Trichopria drosophilae described in Gugerli et al. Agrarforschung Schweiz 2019. Missing data denoted as '999'. Population codes (PopNo) are the following: 1, Vezia; 3, Contone ; 5, Davesco; 6, Corteglia; 7, Mezzana; 8, Stabio; 9, Gordola; 10, Sementina; 12, Brusata di Novazzano; 14, Monteggio; 16, Giubiasco; 17, ComoBP; 18, VD; 19, Weil_D; 20, Dossenheim; 21, BioPlanet_Como. Coordinates (CoordCH_E, CoordCH_N) refer to the Swiss coordinates system CH1903.

en:
 Nuclear microsatellite markers and genotype data for _Trichopria ddrosophilae_

This data set comprises (i) the characteristics of a set of 21 species-specific nuclear microsatellites for PCR amplification in _Trichopria drosophilae_ (ii) and genotype data for samples collected in southern Switzerland (Canton of Ticino), with few reference samples from Canton of Vaud, southern Germany, and northern Italy (lab-reared population).
Markers were developed by Ecogenics GmbH, Balgach (Switzerland), using MiSeq Nano 2x250 v2 format (on a mix of 10 individuals). Multiplex PCR assays for multilocus genotyping were established by Ecological Genetics (WSL Birmensdorf), and population genetic analyses are found in Gugerli et al., Agrarforschung Schweiz 2019.

biological-control

display_name: biological-control

drosophila-suzukii

display_name: drosophila-suzukii

multilocus-genotypes

display_name: multilocus-genotypes

nuclear-microsatellite-markers

display_name: nuclear-microsatellite-markers

population-genetics

display_name: population-genetics

simple-sequence-repeats

display_name: simple-sequence-repeats

trichopria-drosophilae

display_name: trichopria-drosophilae

en: Nuclear microsatellite markers for Trichopria drosophilae, parasitoid wasp on Drosophila suzukii


en: terrestiral-laserscanning tree-volume single-tree lidar forest-inventory biomass

en: Individual tree parameters and volume estimates based on TLS point clouds and allometric models

en:
"ASM" denotes volume estimates calculated by allometric scaling models (as used in Swiss NFI), based on tree height, DBH and D7.
"QSM" denotes volume estimates derived from TLS point clouds by quantitative structure models (QSM).
The remaining variables are geometrical features directly calculated from single tree TLS point clouds.
For more detailed variable descriptions see related publication.

en:
 Dataset
This dataset is based on terrestrial laser scanning (TLS) data acquired during winter 2020/2021 in leaf-off conditions, with a Leica BLK 360 instrument following a tree-centric scanning pattern.
The data was acquired on two sites (47.42°N 8.49°E and 47.504°N, 7.78°E), both of which were managed mixed temperate forest stands.
Individual trees were semi-automatically segmented from the co-registered TLS point clouds.

 Background
Accurate estimates of individual tree volume or biomass within forest inventories are essential for calibration and validation of biomass mapping products based on Earth observation data.
Terrestrial laser scanning (TLS) enables detailed and non-destructive volume estimation of individual trees, with existing approaches ranging from simple geometrical features to virtual 3D reconstruction of entire trees. Validating such approaches with weight measurements is a key step before the integration of TLS or other close-range technologies into operational applications such as forest inventories.
In this study, we firstly evaluate individual tree volume estimation approaches based on 3D reconstruction through quantitative structure models (QSM) against destructive reference data of 60 trees and compare them to operational allometric scaling models (ASM).
Secondly, we determine the explanatory power of TLS-derived geometric parameters regarding total tree, stem, coarse wood and fine branch volume.

biomass

display_name: biomass

forest-inventory

display_name: forest-inventory

lidar

display_name: lidar

single-tree

display_name: single-tree

terrestiral-laserscanning

display_name: terrestiral-laserscanning

tree-volume

display_name: tree-volume

en: Individual tree TLS point clouds for tree volume estimation


maintainer: Sofia Pagliarin

en: imperviousness urban-atlas barcelona soil-sealing milan copernicus

en: Shareable project in Esri ArcGIS format including the HRL IMD data in raster format for each of the territorial boundaries as specified in letter a)-h), see Dataset description

en: Information on data sources

en:
Dataset description

This dataset is a recalculation of the Copernicus 2015 high resolution layer (HRL) of imperviousness density data (IMD) at different spatial/territorial scales for the case studies of Barcelona and Milan. The selected spatial/territorial scales are the following:

 * a)	Barcelona city boundaries
 * b)	Barcelona metropolitan area, Àrea Metropolitana de Barcelona (AMB)
 * c)	Barcelona greater city (Urban Atlas)
 * d)	Barcelona functional urban area (Urban Atlas)
 * e)	Milan city boundaries
 * f)	Milan metropolitan area, Piano Intercomunale Milanese (PIM)
 * g)	Milan greater city (Urban Atlas)
 * h)	Milan functional urban area (Urban Atlas)

In each of the spatial/territorial scales listed above, the number of 20x20mt cells corresponding to each of the 101 values of imperviousness (0-100% soil sealing: 0% means fully non-sealed area; 100% means fully sealed area) is provided, as well as the converted measure into squared kilometres (km2).

 Dataset composition

The dataset is provided in .csv format and is composed of:

_IMD15_BCN_MI_Sources.csv_: Information on data sources

 _IMD15_BCN.csv_: This file refers to the 2015 high resolution layer of imperviousness density (IMD) for the selected territorial/spatial scales in Barcelona:
 * a)	Barcelona city boundaries (label: bcn_city)
 * b)	Barcelona metropolitan area, Àrea metropolitana de Barcelona (AMB) (label: bcn_amb)
 * c)	Barcelona greater city (Urban Atlas) (label: bcn_grc)
 * d)	Barcelona functional urban area (Urban Atlas) (label: bcn_fua)

 _IMD15_MI.csv_: This file refers to the 2015 high resolution layer of imperviousness density (IMD) for the selected territorial/spatial scales in Milan:
 * e)	Milan city boundaries (label: mi_city)
 * f)	Milan metropolitan area, Piano intercomunale milanese (PIM) (label: mi_pim)
 * g)	Milan greater city (Urban Atlas) (label: mi_grc)
 * h)	Milan functional urban area (Urban Atlas) (label: mi_fua)

_IMD15_BCN_MI.mpk_: the shareable project in Esri ArcGIS format including the HRL IMD data in raster format for each of the territorial boundaries as specified in letter a)-h).

Regarding the territorial scale as per letter f), the list of municipalities included in the Milan metropolitan area in 2016 was provided to me in 2016 from a person working at the PIM.

In the IMD15_BCN.csv and IMD15_MI.csv, the following columns are included:

 * Level: the territorial level as defined above (a)-d) for Barcelona and e)-h) for Milan);
 * Value: the 101 values of imperviousness density expressed as a percentage of soil sealing (0-100%: 0% means fully non-sealed area; 100% means fully sealed area);
 * Count: the number of 20x20mt cells corresponding to a certain percentage of soil sealing or imperviousness;
 * Km2: the conversion of the 20x20mt cells into squared kilometres (km2) to facilitate the use of the dataset.

 Further information on the Dataset

This dataset is the result of a combination between different databases of different types and that have been downloaded from different sources. Below, I describe the main steps in data management that resulted in the production of the dataset in an Esri ArcGIS (ArcMap, Version 10.7) project.

 1. The high resolution layer (HRL) of the imperviousness density data (IMD) for 2015 has been downloaded from the official website of Copernicus. At the time of producing the dataset (April/May 2021), the 2018 version of the IMD HRL database was not yet validated, so the 2015 version was chosen instead. The type of this dataset is raster.

 2. For both Barcelona and Milan, shapefiles of their administrative boundaries have been downloaded from official sources, i.e. the ISTAT (Italian National Statistical Institute) and the ICGC (Catalan Institute for Cartography and Geology). These files have been reprojected to match the IMD HRL projection, i.e. ETRS 1989 LAEA.

 3. Urban Atlas (UA) boundaries for the Greater Cities (GRC) and Functional Urban Areas (FUA) of Barcelona and Milan have been checked and reconstructed in Esri ArcGIS from the administrative boundaries files by using a Eurostat correspondence table. This is because at the time of the dataset creation (April/May 2021), the 2018 Urban Atlas shapefiles for these two cities were not fully updated or validated on the Copernicus Urban Atlas website. Therefore, I had to re-create the GRC and FUA boundaries by using the Eurostat correspondence table as an alternative (but still official) data source. The use of the Eurostat correspondence table with the codes and names of municipalities was also useful to detect discrepancies, basically stemming from changes in municipality names and codes and that created inconsistent spatial features. When detected, these discrepancies have been checked with the ISTAT and ICGC offices in charge of producing Urban Atlas data before the final GRC and FUA boundaries were defined.

Steps 2) and 3) were the most time consuming, because they required other tools to be used in Esri ArcGIS, like spatial joins and geoprocessing tools for shapefiles (in particular dissolve and area re-calculator in editing sessions) for each of the spatial/territorial scales as indicated in letters a)-h).

Once the databases for both Barcelona and Milan as described in points 2) and 3) were ready (uploaded in Esri ArcGIS, reprojected and their correctness checked), they have been ‘crossed’ (i.e. clipped) with the IMD HRL as described in point 1) and a specific raster for each territorial level has been calculated. The procedure in Esri ArcGIS was the following:

 * Clipping: Arctoolbox > Data management tools > Raster > Raster Processing > Clip. The ‘input’ file is the HRL IMD raster file as described in point 1) and the ‘output’ file is each of the spatial/territorial files. The option "Use Input Features for Clipping Geometry (optional)” was selected for each of the clipping.
 * Delete and create raster attribute table: Once the clipping has been done, the raster has to be recalculated first through Arctoolbox > Data management tools > Raster > Raster properties > Delete Raster Attribute Table and then through Arctoolbox > Data management tools > Raster > Raster properties > Build Raster Attribute Table; the "overwrite" option has been selected.

 Other tools used for the raster files in Esri ArcGIS have been the spatial analyst tools (in particular, Zonal > Zonal Statistics). As an additional check, the colour scheme of each of the newly created raster for each of the spatial/territorial attributes as per letters a)-h) above has been changed to check the consistency of its overlay with the original HRL IMD file. However, a perfect match between the shapefiles as per letters a)-h) and the raster files could not be achieved since the raster files are composed of 20x20mt cells.

The newly created attribute tables of each of the raster files have been exported and saved as .txt files. These .txt files have then been copied in the excel corresponding to the final published dataset.

barcelona

display_name: barcelona

copernicus

display_name: copernicus

imperviousness

display_name: imperviousness

milan

display_name: milan

soil-sealing

display_name: soil-sealing

urban-atlas

display_name: urban-atlas

educ

en: Education, culture and sport

en: Soil sealing Barcelona and Milan different territorial levels


en: drought european-beech norway-spruce douglas-fir climate-change

en: This file contains the growth data of the 8 plant species used in the Doch-WO experiment.

en: This data is related to the publication "Non-native Douglas fir seedlings outcompete native Norway spruce, silver fir and Scots pine under dry and nutrient-poor conditions". It contains growth and biomass data on Douglas fir seedlings in competition with three native conifers and four native broadleaf trees over three years und varying environmental conditions (i.e., water, nutrients and light availabilities).

climate-change

display_name: climate-change

douglas-fir

display_name: douglas-fir

drought

display_name: drought

european-beech

display_name: european-beech

norway-spruce

display_name: norway-spruce

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data on Douglas fir seedlings from the DOCH-WO experiment


en: snow-depth uas remote-sensing snow swe

en: HS map Brämabül, 14. April 2015

en:
10 cm resolution
15 cm accuracy

mimetype: image/tiff

en: .tfw file

en: coordinates for the .tif raster

en:
This snow depth map was generated 14 January 2015, close to peak of winter accumulation, applying Unmanned Aerial System digital surface models with a spatial resolution of 10 cm. The covered area is 285'000 m2 at the top of Brämabüel, 2490 m a.s.l. covering all expositions. Coordinate system: CH1903LV03.

A detailed description is given here:

Bühler, Y., Adams, M. S., Bösch, R., and Stoffel, A.: Mapping snow depth in alpine terrain with unmanned aerial systems (UASs): potential and limitations, The Cryosphere, 10, 1075-1088, 10.5194/tc-10-1075-2016, 2016.

Abstract:
Detailed information on the spatial and temporal distribution, and variability of snow depth (HS) is a crucial input for numerous applications in hydrology, climatology, ecology and avalanche research. Nowadays, snow depth distribution is usually estimated by combining point measurements from weather stations or observers in the field with spatial interpolation algorithms. However, even a dense measurement network is not able to capture the large spatial variability of snow depth in alpine terrain.
Remote sensing methods, such as laser scanning or digital photogrammetry, have recently been successfully applied to map snow depth variability at local and regional scales. However, such data acquisition is costly, if manned airplanes are involved. The effectiveness of ground-based measurements on the other hand, is often hindered by occlusions, due to the complex terrain or acute viewing angles. In this paper, we investigate the application of unmanned aerial systems (UAS), in combination with structure-from-motion photogrammetry, to map snow depth distribution. Such systems have the advantage that they are comparatively cost-effective and can be applied very flexibly to cover also otherwise inaccessible terrain. In this study we map snow depth at two different locations: a) a sheltered location at the bottom of the Flüela valley (1900 m a.s.l.) and b) an exposed location (2500 m a.s.l.) on a peak in the ski resort Jakobshorn, both in the vicinity of Davos, Switzerland. At the first test site, we monitor the ablation on three different dates. We validate the photogrammetric snow depth maps using simultaneously acquired manual snow depth measurements. The resulting snow depth values have a root mean square error (RMSE) better than 0.07 to 0.15 m on meadows and rocks and a RMSE better than 0.30 m on sections covered by bushes or tall grass. This new measurement technology opens the door for efficient, flexible, repeatable and cost effective snow depth monitoring for various applications, investigating the worlds cryosphere.

remote-sensing

display_name: remote-sensing

snow

display_name: snow

snow-depth

display_name: snow-depth

swe

display_name: swe

uas

display_name: uas

en: UAS based snow depth maps Brämabüel, Davos, CH


en: meteorology swiss-forest-lab temperature long-term relative-humidity precipitation wind-speed meteo climate-change par

en: Forest station data (LAB)

en: Data file.

en: Field station data (LAF)

en: Data plot of the forest station (LAB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Site aerial photo (Lausanne)

en: Site aerial photo from both Lausanne stations. Source: Google. 2016. Site aerial photo from both Lausanne stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: Data plot of the field station (LAF)

en: Site photo of the field station (LAF)

en: Site photo of the field station from the side.

en: Site photo of the forest station (LAB)

en: Site photo of the fforest station from the side.

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Lausanne in Switzerland where one station is located within a natural mixed forest stand (LAB) with European beech (_Fagus sylvatica_; 160-170 yrs), European silver fir (_Abies alba_; 160-170 yrs) and Norway spruce (_Picea abies_; 160-170 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, LAF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Lausanne is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Lausanne, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1996 onwards


maintainer: Adam Winstral

en: snow jules-investigation-model jim snow-simulation snow-depth

en: HS and SWE observations

en: Automated (HS) and manual (SWE) data used to evaluate model simulations

en: DEM

en: 1-km resolution DEM used for downscaling gridded NWP data to stations and for distributing BDE evaluations at HS-stations to SWE-stations

mimetype: text/plain

en: Station forcing data

en: All forcing data need to run JIM at HS and SWE stations. These are data downscaled directly from COSMO NWP data (WY14, WY15) and further enhanced by additional station observations of snow depth (HS) and air temperature (Ta) in WY17. Further information can be found in README file. Note that in WY14 and WY15, shortwave radiation was not split into direct and diffuse (not necessary for JIM) and that the default method in JIM for splitting precipitation phase was used. In WY 17, direct and diffuse were combined as input to JIM and JIM was forced with pre-processed liquid and solid precipitation phases.

en: File/data descriptor

en: These data were used to drive and evaluate Jules Investigation Model (JIM) snow simulations. The data provided are the forcing data used for the "deterministic" runs as described in Winstral et al., 2019. The bias-detecting ensemble (Winstral et al., 2019) used observed snow depths (HS) to detect biases in these deterministic simulations related to precipitation and energy inputs to JIM. Simulations that included the BDE evaluations substantially improved JIM simulations.

jim

display_name: jim

jules-investigation-model

display_name: jules-investigation-model

snow-simulation

display_name: snow-simulation

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Meteorological data used to develop and validate the bias-detecting ensemble (BDE)


en: snow-density snow-water-equivalent model-validation-data snow-depth model-calibration-data

en: swe2hs calibration and validation data

en:
 Contents of this archive

 README.md

 A readme file containing a description of the other files.

 automatic_stations_validation_data.csv

 Daily data from the automatic weather stations used for validation.

 Data sources and providers are listed in the SWE2HS paper, Table 1.

 Columns:

  * date: timestamp of the format YYYY-MM-DD
  * HS_[m]: snow depth in [m]
  * SWE_[m]: snow water equivalent in [m]
  * site_id: code for the measurement site
  - HS_interpolated: boolean flag for interpolated values
  - SWE_interpolated: : boolean flag for interpolated values

 coordinates_swe2hs_paper_stations.csv

 Coordinates of all measurement sites used in the SWE2HS paper.

 Columns:

  * site_id: code for the measurement site
  * location_name: location name of the measurement site
  * lon_[wgs84]: longitude in WGS84
  * lat_[wgs84]: latitude in WGS84
  * elevation_[m]: atitude of the measurement site in [m]
  * dataset: dataset in which the station is included

 manual_station_calibration_data.csv

 Calibration data from the Swiss manual observer stations. Long station records
 trmmed to 15 random water-years.

 Columns:

  * date: timestamp of the format YYYY-MM-DD
  * HS_[m]: snow depth in [m]
  * SWE_[m]: snow water equivalent in [m]
  * SWE_from_profile_[m]: biweekly measurement from the SWE in the measurement
   pit. Corrected with the bulk density in order to match the snow depth from
   the measurement stake. Please refer to the paper for further details.
  * site_id: code for the measurement site

 manual_stations_validation_data.csv

 Validation data from the Swiss manual observer stations. Remaining water-years
 from the long sttaion record not used for the calibration data.

 Columns:

  * date: timestamp of the format YYYY-MM-DD
  * HS_[m]: snow depth in [m]
  * SWE_[m]: snow water equivalent in [m]
  * SWE_from_profile_[m]: biweekly measurement from the SWE in the measurement
   pit. Corrected with the bulk density in order to match the snow depth from
   the measurement stake. Please refer to the paper for further details.
  * site_id: code for the measurement site

 manual_stations_used_deltasnow_parameters.csv

 Site specific DeltaSNOW model parameters used for the calculation of the daily
 SWE series in 'manual_stations_calibration_data.csv' and
 'manual_stations_validation_data.csv'.

 Parameters were optimized by reducing RMSE to the biweekly snow pit SWE measurements.
 Please refer to the paper for further details.

 A python implementation of the DeltaSNOW model was used for the calculation:
 pydeltasnow (https://pypi.org/project/pydeltasnow/)

 For a detailed description of the DeltaSNOW model parameters please see the
 respective publication:

 Winkler, M., Schellander, H., & Gruber, S. (2021). Snow water equivalents
 exclusively from snow depths and their temporal changes: the Δ snow model.
 Hydrology and Earth System Sciences, 25(3), 1165-1187.

 Columns:

  * site_id: code for the measurement site
  * rho_max: Maximum density of an individual snow layer produced by the DeltaSNOW model in [kg/m3]
  * rho_null: Fresh snow density for a newly created layer [kg/m3
  * c_ov: Overburden factor due to fresh snow [-]
  * k_ov: Defines the impact of the individual layer density on the compaction due to overburden [-]
  * k: Exponent of the exponential-law compaction [m3/kg]
  * tau: Uncertainty bound [m]
  * eta_null: Effective compactive viscosity of snow for “zero-density” [Pa s]

en:
The data in this repository was used for the calibration and validation of the
SWE2HS model in the following publication:
Aschauer, J., Michel, A., Jonas, T., & Marty, C. (2023). An empirical model to calculate snow depth from daily snow water equivalent: SWE2HS 1.0. Geoscientific Model Development Discussions, 1-19. https://doi.org/10.5194/gmd-2022-258
Contains daily snow water equivalent and snow depth timeseries from stations in the European Alps.

model-calibration-data

display_name: model-calibration-data

model-validation-data

display_name: model-validation-data

snow-density

display_name: snow-density

snow-water-equivalent

display_name: snow-water-equivalent

en: SWE2HS model calibration and validation data


en: teleo edna metabarcoding atlantic-region actinopterygii chondrichthyes bay-biscay fish-composition

en: Data access

en: Please use cyberduck to download for the moment

en:
Environmental DNA complements scientific trawling in surveys of marine fish biodiversity (Dataset 2021)
At the end of October and the beginning of November 2021, we selected 18 sites from the 2021 EVHOE survey for eDNA sampling. The French international EVHOE bottom trawl survey is conducted annually in autumn in the Bay of Biscay (BoB) to monitor demersal fish resources. All selected sites were located on the continental shelf at depths ranging from 30 to 230 m. At each site, we sampled seawater using an underwater pump equipped with two peristaltic heads (subspace), mounted on Ifremer’s Pagure sledge. We collected approximately 30 liters of water directly from the seabed at a flow rate of 1.0 L min⁻¹. For filtration, we used VigiDNA 0.20 μm filtration capsules (SPYGEN, Le Bourget-du-Lac, France) along with disposable sterile tubing. Each filtration device processed water along a transect, representing two replicates per sampling site. To prevent contamination during fieldwork, we adhered to strict protocols, including the use of disposable gloves and single-use filtration equipment. At the end of each filtration, we emptied the remaining water from the capsule and replaced it with 80 mL of CL1 conservation buffer before storing the samples at room temperature. We processed the eDNA capsules at SPYGEN, following the protocol outlined by Polanco-Fernández et al. (2020). Library preparation and sequencing were performed at Fasteris (Geneva, Switzerland). Specifically, we prepared four libraries using the MetaFast protocol (a ligation-based method) and sequenced them separately. Paired-end sequencing was conducted using a MiSeq sequencer (2 × 125 bp, Illumina, San Diego, CA, USA) on two MiSeq Flow Cell Kits (v3; Illumina), following the manufacturer’s instructions. We analyzed the sequence reads using the OBITools package (http://metabarcoding.org/obitools; Boyer et al., 2016), following the protocol described by Valentini et al. (2016).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

actinopterygii

display_name: actinopterygii

atlantic-region

display_name: atlantic-region

bay-biscay

display_name: bay-biscay

chondrichthyes

display_name: chondrichthyes

edna

display_name: edna

fish-composition

display_name: fish-composition

metabarcoding

display_name: metabarcoding

teleo

display_name: teleo

en: Environmental DNA Marine France Evhoe 2021


maintainer: Markus Didion

en: stemwood section-wise-diameter allometry tree-volume growing-stock branchwood

en: manuscript submitted for publication.

en: additional background information on this work

en: dataset with section-wise stem diameter and branchwood volume measurements. For column definitions see Column_definitions.pdf.

en: definitions of data in columns contained in the dataset Stem&Branchchwood_2024-02-29.txt

en: Updated dataset of outdated_Stem&Branchchwood_2024-02-29.txt, including corrections to the assignment of tree species to NFI main species and location information for two additional sites.

en: Revised version of the initial submission StemBranchwood_Didionetal_initialsubmission.pdf after review.

en:
The data presented here were prepared for publication in form of a data paper. The dataset presents an update of the information in Didion M, Herold A, Vulovic Z, Nitzsche J, Stillhard J (2022) Datasets for deriving functions for the stem- and branchwood volume in the Swiss National Forest Inventory. EnviDat. doi:https://www.doi.org/10.16904/envidat.358. The new dataset is based on an alternative, more accurate and comprehensive dataset, that was identified as the source of the dataset in Didion et al. 2022. It includes additional data, including newly digitized information.
The dataset includes section-wise stem measurements on 40’349 felled individual trees and empirically derived coarse (diameter >= 7 cm) and fine branch volume of 27’297 and 18’980, respectively, individual trees. The data were collected between 1888 and 1974 across Switzerland covering a large topographic gradient and a diverse species range. The dataset has undergone quality controls and due to its origin from 768 plots of the Experimental Forest Management project long-term consistency is assured.

allometry

display_name: allometry

branchwood

display_name: branchwood

growing-stock

display_name: growing-stock

section-wise-diameter

display_name: section-wise-diameter

stemwood

display_name: stemwood

tree-volume

display_name: tree-volume

en: A dataset of 40000 trees with section-wise measured stem diameter and length and volume of branches from across Switzerland


causal-effect-of-mfoz

title_for_slug: causal-effect-of-mfoz

en: the-major-function-oriented-zone causality built-up-land-change selection-bias propensity-score-matching fujian-province

en: Data and Stata code for repeating the results

en:
Data.xlsx is the variables of 952 townships
Table 1-2 NN(1-1)_noreplace_caliper(0.01).do is STATA code to produce the results in Table 1 and 2
Figure 5 Distribution of the propensity scores.R is R code rto produce Figure 5
Figure 5 Standard mean difference.R is R code rto produce Figure 5

en:
Title: Closer to causality: How effective is spatial planning in governing built-up land expansion in Fujian Province, China?

Research objective: The Major Function Oriented Zone (MFOZ), the first strategic spatial plan in China, is developed to achieve a coordinated regional development, through spatial regulation and zoning of development. The MFOZ he MFOZ divided land into four major function-oriented zones: The development-optimized zone, the development-prioritised zone, the development-restricted zone, and the development-prohibited zone. We used propensity score marching to evaluate the effect of the MFOZ on built-up land expansion in Fujian Province over three time intervals (2013–2015, 2013–2018 and 2013–2020).

Data: Data.xlsx contains the variables of 954 towns in Fujian Province.
Town_ID is the town unique ID;
County_ID is the county unique ID;
City_ID is the city unique ID;
MFOZ is the the development-prioritised zone and the development-restricted zone (The development-optimized zone and the development-prohibited zone are excluded);
Builtup_13_15 is the built-up land expansion from 2013 to 2015;
Builtup_13_18 is the built-up land expansion from 2013 to 2018;
Builtup_13_20 is the built-up land expansion from 2013 to 2020;
Dis2water is the Euclidean distance from the town to the nearest waterbody;
Slope is the the average slope within the town;
GDP is the average GDP in 2010 within the town;
Pop is the average population in 2010 within the town;
Road is the average population in 2010 within the town;
Dis2city is the Euclidean distance from the town to the nearest prefectural city centre;
Nei_Arable, Nei_Forest, and Nei_Built.up are the area of arable land, forest land, and built-up land neighbouring town i in 2010.

Method: we used the propensity score matching to compare the changes in the amount of built-up land in the towns of the development-prioritised zone with the matched towns of the development-restricted zone. Additionally, we used three evaluation intervals (2013–2015, 2013–2018 and 2013–2020) to evaluate temporal variation in the causal effect of the MFOZ on built-up land expansion.

built-up-land-change

display_name: built-up-land-change

causality

display_name: causality

fujian-province

display_name: fujian-province

propensity-score-matching

display_name: propensity-score-matching

selection-bias

display_name: selection-bias

the-major-function-oriented-zone

display_name: the-major-function-oriented-zone

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Causal effect of MFOZ


en: scenario policy-action landscape-change climate-change visualization

en: Seeland subtitles FR

en:
Scenarios of landscape change under climate change in the Swiss lowlands.
Trailer in French with subtitles.

en: Seeland subtitles DE

en:
Scenarios of landscape change under climate change in the Swiss lowlands.
Trailer in German with subtitles.

en: Entremon subtitles FR

en: Scenarios of landscape change under climate change in the Swiss mountains. Trailer in French with subtitles.

en: Entremont subtitles DE

en:
Scenarios of landscape change under climate change in the Swiss mountains.
Trailer in German with written subtitles.

en:
Short videos showing scenarios of potential landscape development in a 4°C warmer climate for a Swiss mountain region and a region on the Swiss Plateau. The videos are in German or French with subtitles.
The videos' key message is: Climate change will have an impact on the Swiss landscapes. However, according to the strategy chosen to adapt to climate change, society and politics will also have a strong influence on the future landscapes and the services they will provide. If no action is taken to adapt to climate change today, then society will have to react in a hurry at a later point in time. This can often result in resource-intensive technical solutions. Conversely, if society takes action in an anticipatory way already today, nature-based solutions can be implemented more successfully and humans can benefit more from the landscape services..
These short videos are teasers that should make the viewers curious to visit the panorama pictures (https://viergrad.envidat.ch/).

climate-change

display_name: climate-change

landscape-change

display_name: landscape-change

policy-action

display_name: policy-action

scenario

display_name: scenario

visualization

display_name: visualization

en: Teaser videos Swiss landscapes under climate change


en: last-glacial-maximum precipitation glaciers air-temperature orography paleo-climate

en: Technical documentation

en: Technical documentation containing file metadata and variable descriptions.

en: Data Access

en:
High resolution, downscaled climate model data are used in a wide variety of applications in environmental sciences. Here we present the CHELSA-TraCE21k downscaling algorithm to create global monthly climatologies for temperature and precipitation at 30 arcsec spatial resolution in 100 year time steps for the last 21,000 years. Paleo orography at high spatial resolution and at each timestep is created by combining high resolution information on glacial cover from current and Last Glacial Maximum (LGM) glacier databases with the interpolation of a dynamic ice sheet model (ICE6G) and a coupling to mean annual temperatures from CCSM3-TraCE21k. Based on the reconstructed paleo orography, mean annual temperature and precipitation was downscaled using the CHELSA V1.2 algorithm.

The data is published under a Creative Commons Attribution 2.0 Generic (CC BY 2.0) license.

air-temperature

display_name: air-temperature

glaciers

display_name: glaciers

last-glacial-maximum

display_name: last-glacial-maximum

orography

display_name: orography

paleo-climate

display_name: paleo-climate

precipitation

display_name: precipitation

en: CHELSA-TraCE21k: Downscaled transient temperature and precipitation data since the last glacial maximum