maintainer: Anita C. Risch

en: fertilization grassland herbivore mineralization nitrification global-change nitrogen ammonification soil nutrient-network climate

en: Risch et al. 2020 - Raw data for publication "Global impacts of fertilization and herbivore removal on soil net nitrogen mineralization are modulated by local climate and soil properties"

en:
we assessed how the removal of mammalian herbivores (Fence) and fertilization with growth-limiting nutrients (N, P, K, plus nine essential macro- and micronutrients; NPK) individually, and in combination (NPK+Fence), affected potential and realized soil net Nmin across 22 natural and semi-natural grasslands on five continents. Our sites spanned a comprehensive range of climatic and edaphic conditions found across the grassland biome. We focused on grasslands, because they cover 40-50% of the ice-free land surface and provide vital ecosystem functions and services. They are particularly important for forage production and C sequestration. Worldwide, grasslands store approximately 20-30% of the Earth’s terrestrial C, most of it in the soil (Schimel, 1995; White et al., 2000).

Study sites and experimental design
The 22 sites contributing to this project are part of the Nutrient Network Global Research Cooperative (NutNet, https://nutnet.umn.edu/). Mean annual temperature across our 22 sites ranged from -4 to 22°C, mean annual precipitation from 252 to 1,592 mm, and elevations from 6 to 4,261 m above sea level (Fig. 1, Supplementary Table S1). Soil organic C varied from 0.8 to 7.8%, soil total N from 0.1 to 0.6%, and the soil C:N ratio from 9.1 to 21.5. Soil clay content spanned from 3.0 to 35%, and soil pH from 3.4 to 7.6 (Supplementary Table S2). Thus, the sites covered a wide range of environments in which grasslands occur (Fig. 1, Supplementary Table S1 & S2).
At each site, the effects of nutrient addition and herbivore removal were tested via a randomized-block design (Borer et al., 2014; Supplementary Fig. S1a). Three replicate blocks with 10 treatment plots each were established at each site, with the exception of the site at bldr.us, where only two blocks were established (Supplementary Fig. S1a). The 10 plots were randomly assigned to a nutrient or fencing treatment, but only a subset of four plots was used in the current study, each with a different treatment (see below; Supplementary Fig. S1a). All plots were 5 x 5 m and divided into four 2.5 x 2.5 m subplots (Supplementary Fig. S1b). Each subplot was further divided into four 1 x 1 m square sampling plots, one of which was set aside for soil sampling (Borer et al., 2014; Supplementary Fig. S1b). Plots were separated by at least 1 m wide walkways.
In this study, we collected data from the following four treatments: (i) untreated control plots (Control), (ii) herbivore removal plots (Fence), (iii) plots fertilized with N, P, K, plus nine essential macro and micronutrients (NPK), and (iv) plots with simultaneous fertilizer addition and herbivore removal (NPK+Fence; Supplementary Fig. S1a). The number of years of treatment differed among sites (2 – 9 years since start of treatment; Supplementary Table S1). For the nutrient additions, all sites applied 10 g N m-2 yr-1 as time-release urea; 10 g P m-2 yr-1 as triple-super phosphate; 10 g K m-2 yr-1 as potassium sulfate. A micro-nutrient mix (Fe, S, Mg, Mn, Cu, Zn, B, Mo, Ca) was applied at 100 g m-2 together with K in the first year of treatments but not thereafter.
The vertebrate herbivore removal treatment (Fence) was established by fencing two plots, one control and one NPK plot, within each of the blocks (Supplementary Fig. S1a). We designed the fences so that they would effectively exclude aboveground mammalian herbivores with a body mass of over 50 g (Borer et al., 2014). At the majority of sites, the height of the fences was 180 cm, and the fence design included wire mesh (1 cm holes) on the first 90 cm along with a 30 cm outward-facing flange stapled to the ground to exclude burrowing animals; climbing and subterranean animals may potentially still access these plots (Borer et al., 2014). For slight modifications in fence design at a few sites see Supplementary Table S3. While most sites only had native herbivores, a few sites (4) were also grazed by domestic animals (Supplementary Table S1).
Potential and realized soil net N mineralization, ammonification, nitrification and other soil properties
Each site participating in the study received a package containing identical material from the Swiss Federal Institute for Forest, Snow and Landscape Research (WSL) to be used for sampling and on-site N incubations. For the field incubation, we followed the protocol by Risch et al. (2015, 2019). Briefly, we drove a 5 x 15 cm (diameter x depth) steel cylinder 13.5 cm deep into the soil after clipping the vegetation at randomized locations in each plot. The top 1.5 cm of the cylinder remained empty to capture incoming N from run-off or deposition with a polyester mesh bag (mesh-size 250 µm) filled with 13.2 ± 0.9 g of acidic and alkaline exchanger resin (1:1 mixture; ion-exchanger I KA/ion-exchanger III AA, Merck AG, Darmstadt). The bag was fixed in place with a metal Seeger ring (Bruetsch-Rüegger Holding, Urdorf, Switzerland). We then removed 1.5 cm soil at the bottom of the cylinder and placed another resin bag to capture N leached from the soil column. The exchange resin was saturated with H+ and Cl- prior to filling the bags by stirring the mixture in 1.2M HCl for 1 h and then rinsing it with demineralized water until the electrical conductivity of the water reached 5 μS/cm. The cylinders were then re-inserted into the cored hole, level with the soil surface, and incubated for an average of 42 days (range 40 to 57days). The individual site coordinators chose the timing of incubation to start approximately six weeks prior to peak plant biomass production. All incubations were completed between February 2015 and January 2016 accounting for differences in growing season between northern and southern hemispheres. At the end of the incubation, the cylinders were re-collected and immediately shipped to WSL in an insulated box together with cold packs to halt further mineralization. Gloves were worn at all times to avoid contamination of the samples. Upon arrival at WSL, we extracted the resin bags and a 20 g subsample of sieved soil (4 mm) separately in a 100 ml PE-bottle with 80 ml 1 M KCl for 1.5 h on an end-over-end shaker and filtered through ashless folded filter paper (DF 5895 150, ALBET LabScience). We measured NO3- (colorimetrically; Norman & Stucki, 1981) and NH4+concentrations (flow injection analysis; FIAS 300, Perkin Elmer) on these filtrates.
At the start of the field incubation, we additionally collected two soil cores of 5 x 12 cm (diameter x depth) in each sampling plot and composited them to measure potential soil net Nmin, soil chemical and biological properties (see below). We also collected an additional sample (5 x 12 cm) to assess soil physical properties, which remained within the steel cylinder. Both ends were tightly closed with plastic caps. Cores were carefully packed to avoid further disturbance, and together with the composited soil samples, were shipped to the laboratory at WSL within a few days after collection.
From the composited samples, we extracted an equivalent of 20 g dry soil with KCl, as described above, and measured NO3- and NH4+concentrations. Realized soil net Nmin was then calculated as the difference between the inorganic N content of samples collected at the end of the incubation (plus N extracted from the bottom resin bag) and the N content at the beginning of the incubation; values were scaled to represent daily mineralization rates (mg N kg-1soil d-1; Risch et al., 2015). Realized soil net Nmin values represent an average period of 42 days prior to peak biomass, typically the highest period of biological activity, and not the entire year (Risch et al., 2019).
A second subsample of the composited sample was used to determine potential soil net Nmin in the laboratory (Risch et al., 2019). Briefly, we weighed duplicate samples (8 g dry soil) into 50-ml Falcon tubes. Soil moisture was brought to 60% of the field capacity of each plot, the Falcon tubes tightly closed and then incubated at 20°C for 42 days in a dark room. Every week the Falcon tubes were opened and ventilated. At the end of the incubation, the soil samples were extracted the same way as described above and NO3- and NH4+ was determined. Potential soil net Nmin was calculated as the difference between the N content before and after the incubation and scaled to represent daily values (mg N kg-1soil d-1). Using our NO3- and NH4+ measures we also calculated potential and realized soil net nitrification and soil net ammonification to be able to better understand the drivers of fertilization and herbivore removal effects on potential and realized soil net Nmin.
A third subsample of the composite soil sample was sieved (2 mm mesh) and microbial biomass (μg Cmic g-1 soil dry weight) was estimated by measuring the maximal respiratory response to the addition of glucose solution (4 mg glucose per g soil dry weight dissolved in distilled water; substrate-induced respiration method) on approximately 5.5 g of soil (Anderson & Domsch, 1978). The rest of the composited sample was dried at 65°C for 48 h, ground and sieved (2 mm mesh) to assess a series of soil chemical properties (Risch et al., 2019). We measured the percentage of clay as an indicator of soil texture (Gee & Bauder, 1986; Risch et al., 2019).
Statistical analyses
Potential and realized soil net Nmin were square root transformed to account for a highly skewed data distribution (yt = sign(y)*sqrt|y|; negative values in the data set impeded log transformation). To assess treatment effects on potential and realized soil net Nmin, we used linear mixed effects models (LMMs) fitted by maximum likelihood using the lme function from the nlme package (version 3.131.1; Pinheiro et al., 2016), R version 3.6.1; R Foundation for Statistical Computing. Treatment (Control, Fence, NPK, NPK+Fence) was a fixed factor, with site and block as random factors, where block was nested within site. We also tested for effects of time since start of treatments in preliminary analyses by adding total treatment years as an additional fixed factor. We did not find a significant effect of years of treatment, and thus dropped this variable from the models. The LMMs were corrected using varIdent if the homogeneity of variance criterion was not met (Pinheiro et al., 2016). To visualize our results, we calculated treatment effects using Cohens’ d statistic (Cohen, 1977; Koricheva et al., 2013). Note that calculating response ratios (or log response ratios) was not possible with our data, as we have both negative and positive values. We also fitted LMMs for potential and realized soil net ammonification and nitrification to gain more insight into how global change affects the processes underpinning potential and realized soil net Nmin. We also sqrt-transformed (see above) these dependent variables. Treatment was included as a fixed factor with random factors as described above. In addition, we assessed how potential and realized soil net Nmin were related to potential and realized soil net ammonification and nitrification, respectively. For this, we calculated site averages for each treatment separately. We then ran LMMs, with potential and realized soil net Nmin as the dependent variable, potential and realized soil net ammonification/nitrification as the independent ones. Site was included as a random factor.
Based on our previous work (Risch et al., 2019) and the existing literature (Schimel & Bennett, 2004; Liu et al., 2017), we developed a priori causal conceptual models of relationships among treatments, environmental drivers, and potential and realized soil net Nmin (Supplementary Fig. S2) to test with structural equation modelling (SEM) using a d-sep approach (Shipley, 2009; Lefcheck, 2016). The variables included in the model were long-term climatic conditions, specifically, site-level mean annual precipitation (MAP) and temperature of the wettest quarter (T.q.wet), plot-level soil texture (clay content) and soil microbial biomass. Mean annual precipitation and T.q.wet were obtained from WorldClim (Hijmans et al., 2005) (http://www.worldclim.org/) and together with the experimental treatments were predicted to directly affect soil properties and soil net Nmin (Supplementary Fig. S2). Soil clay content was, in turn, predicted to affect microbial biomass and soil net Nmin. Because we determined microbial biomass prior to incubating the samples in the laboratory or field, we assumed that the abundance of these microbes would be responsible for N process rates and not vice versa (Supplementary Fig. S2). We tested our conceptual model (Supplementary Fig. S2) using the piecewiseSEM package (version 2.0.2; Lefcheck, 2016) in R 3.4.0, in which a structured set of linear models are fitted individually. This approach allowed us to account for the nested experimental design, and overcome some of the limitations of standard structural equation models, such as small sample sizes (Shipley, 2009; Lefcheck, 2016). We used the lme function of the nlme package to model response variables, including site as a random factor. Good fit of the SEM was assumed when Fisher’s C values were non-significant (p > 0.05). For all significant interactions between covariates and experimental treatments detected in the SEMs, we calculated treatment effect sizes, i.e. the differences in potential or realized soil net Nmin between Control and treatments (Fence, NPK, NPK+Fence) and plotted these values against the climate or soil covariates. Finally, we fitted LMMs for the soil variables included in our SEMs, with treatment as the fixed factor, and with site and block as random factors, where block was nested within site.

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch Anita C., Zimmermann, Stefan, Moser, Barbara, Schütz, Martin, Hagedorn, Frank, Firn, Jennifer, Fay, Philip A., Adler, Peter B., Biederman, Lori A., Blair, John M., Borer, Elizabeth T., Broadbent, Arthur A.D., Brown, Cynthia S., Cadotte, Marc W., Caldeira, Maria C., Davies, Kendi F., di Virgilio, Augustina, Eisenhauer, Nico, Eskelinen, Anu, Knops, Johannes M.H., MacDougall, Andrew S., McCulley, Rebecca L., Melbourne, Brett A., Moore, Joslin L., Power, Sally A., Prober, Suzanne M., Seabloom, Eric W., Siebert, Julia, Silveira, Maria L. , Speziale, Karina L., Stevens, Carly J., Tognetti, Pedro M., Virtanen, Risto, Yahdjian, Laura, Ochoa-Hueso, Raul (accepted). Global impacts of fertilization and herbivore removal on soil net nitrogen mineralization are modulated by local climate and soil properties. Global Change Biology

Please cite this paper together with the citation for the datafile.

We assessed how the removal of mammalian herbivores (Fence) and fertilization with growth-limiting nutrients (N, P, K, plus nine essential macro- and micronutrients; NPK) individually, and in combination (NPK+Fence), affected potential and realized soil net Nmin across 22 natural and semi-natural grasslands on five continents. Our sites spanned a comprehensive range of climatic and edaphic conditions found across the grassland biome. We focused on grasslands, because they cover 40-50% of the ice-free land surface and provide vital ecosystem functions and services. They are particularly important for forage production and C sequestration. Worldwide, grasslands store approximately 20-30% of the Earth’s terrestrial C, most of it in the soil (Schimel, 1995; White et al., 2000).

ammonification

display_name: ammonification

climate

display_name: climate

fertilization

display_name: fertilization

global-change

display_name: global-change

grassland

display_name: grassland

herbivore

display_name: herbivore

mineralization

display_name: mineralization

nitrification

display_name: nitrification

nitrogen

display_name: nitrogen

nutrient-network

display_name: nutrient-network

soil

display_name: soil

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Anthropogenic change and soil net N mineralization


maintainer: EnviDat Support

en: canopy-height snow-distribution forest-structure airborne-laser-scanning snow-depth

state: active

type: dataset

en: Canopy height maps

media_type: application/zip

en: Canopy height maps of each of the three field areas Davos, Engadine and Grand Mesa

format: ZIP

mimetype: application/zip

en: Snow depth maps

en: Snow depth maps from two snow-on flights at each of the three field areas Davos (March 20th and 31st 2017), Engadien (March 20th and 31st, 2017) and Grand Mesa (February 8th and 16th, 2017)

en: Readme

media_type: text/plain

format: TXT

mimetype: text/plain

en: Terrain elevation maps

en: Digital elevation model computed from snow-off flights for each of the field areas Davos, Engadine and Grand Mesa

en:
This dataset includes snow depth, canopy height and terrain elevation maps of forest stands in the Grisons (CH) and at Grand Mesa (CO,USA) derived from airborne lidar. Data were acquired i) within a pilot mission of NASA's Airborne Snow Observatory in the Swiss Alps in March 2017 and ii) during NASA’s SnowEx campaign at Grand Mesa in February 2017. Snow depth maps are available for two dates separated by approx.1 week, and include an area of ca. 0.5km2 for each of the three sites Davos, Engadine and Grand Mesa.
All data were presented and analyzed in the publication 'Revisiting Snow Cover Variability and Canopy Structure within Forest Stands: Insights from Airborne Lidar Data' (Mazzotti et al., 2019, WRR, doi: 10.1029/2019WR024898). This publication must be cited when using this dataset.

Paper Citation:
 > _Giulia Mazzotti; William Ryan Currier; Jeffrey S. Deems; Justin M. Pflug; Jessica D. Lundquist; Tobias Jonas (2019). Revisiting Snow Cover Variability and Canopy Structure Within Forest Stands: Insights From Airborne Lidar Data. Water Resources Research, 55, 6198– 6216, [doi: 10.1029/2019WR024898](https://doi.org/10.1029/2019WR024898)._

airborne-laser-scanning

display_name: airborne-laser-scanning

canopy-height

display_name: canopy-height

forest-structure

display_name: forest-structure

snow-depth

display_name: snow-depth

snow-distribution

display_name: snow-distribution

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

envidat

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: ALS-based snow depth and canopy height maps from flights in 2017 (Grisons, CH and Grand Mesa, CO)


maintainer: Michael Eisenring

en: european-beech phytochemistry insect-herbivores light-pollution alan

en: Raw_data_Ceppi et al..xlsx

en: Raw data for the Publication Ceppi et al. 2025 in Journal of Applied Ecology: ARTIFICAL NIGHT LIGHT INTENSITY MODULATES HERBIVORY AND PHYTOCHEMISTRY IN EUROPEAN BEECH

format: XLS

en: Raw data on plant morphological traits, phytochemistry and herbivory that were analyzed in the study entitled: Artificial night light intensity modulates herbivory and phytochemistry in European beech

alan

display_name: alan

european-beech

display_name: european-beech

insect-herbivores

display_name: insect-herbivores

light-pollution

display_name: light-pollution

phytochemistry

display_name: phytochemistry

en: Raw data - Artificial night light intensity modulates herbivory and phytochemistry in European beech


en: snow-water-equivalent imis enet weissfluhjoch snow-height snow-temperatures

en: DATA ACCESS

en:
Station WFJ2: merged IMIS + ENET datasets. Provides parameters height of snow, snow surface temperatures and snow temps at 0, 1, 1.5 m above ground surface. Supporting meteo data are also contained in this dataset.

fields      = timestamp TA RH TSG TSS HS VW DW VW_MAX OSWR PSUM VW_DRIFT DW_DRIFT TS1 TS2 TS3 HTS1 HTS2 HTS3

format: SERVICE

en: This dataset provides HS, TSS and TS50, TS100, TS150 at the station WFJ2 situated on the Weisfluhjoch research site (2536 m asl). It has been created from merging ENET and IMIS datsets to form a continuous timeseries from 1992- present. ENET is at 1 h resolution whereas IMIS is 30 min. This is a level 2 dataset as defined [here](http://models.slf.ch/p/dataset-processing/).

enet

display_name: enet

imis

display_name: imis

snow-height

display_name: snow-height

snow-temperatures

display_name: snow-temperatures

snow-water-equivalent

display_name: snow-water-equivalent

weissfluhjoch

display_name: weissfluhjoch

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: WFJ2: Snow measurements from the Weissfluhjoch research site, Davos


en: survey landscape-perception ppgis traffic-noise outdoor-restoration

en: Coding analysis third round for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

media_type: text/csv

en: Variable list for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

format: CSV

en: RESTORE WP4_Questionnaire_Italian.pdf

media_type: application/pdf

en: Questionnaire in Italian

format: PDF

en: Description of the sample stratification process for the invitation to participate in the survey

en: Variable list for statistical analyses for article in Landscape and Urban Planning [https://doi.org/10.1016/j.landurbplan.2025.105339](https://doi.org/10.1016/j.landurbplan.2025.105339)

en: Raw data for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Study protocol of the survey

en: RESTORE WP4_Questionnaire_French.pdf

en: Questionnaire in French

en: Cleaned raw data from survey for article in Landscape and Urban Planning [https://doi.org/10.1016/j.landurbplan.2025.105339](https://doi.org/10.1016/j.landurbplan.2025.105339)

en: Coding analysis first round for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Coding analysis second round for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Processed survey data for window view for article in Landscape and Urban Planning [https://doi.org/10.1016/j.landurbplan.2025.105339](https://doi.org/10.1016/j.landurbplan.2025.105339)

en: RESTORE WP4_Questionnaire_German.pdf

en: Questionnaire in German

en: Processed data for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Processed data for coding analysis for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Processed survey data of restorative locations for article in Landscape and Urban Planning [https://doi.org/10.1016/j.landurbplan.2025.105339](https://doi.org/10.1016/j.landurbplan.2025.105339)

en:
This repository contains data related to the Swiss-wide survey of the RESTORE project. This project is a collaboration between the Swiss Federal Institute for Forest, Snow and Landscape Research (WSL) and the Swiss Federal Laboratories for Materials Science & Technology (EMPA). It has received funding from the Swiss National Science Foundation. The objective of the RESTORE project was to assess the effects of green spaces as facilitators and noise as impediment to recover from stress in people's daily environments across Switzerland.
We conducted a nation-wide participatory mapping survey among Swiss residents to explore:
1.	The effects of greenness and noise exposure on psychological restoration when looking out of the window at home or when visiting nearby green spaces. It adopted a landscape approach to examine the interplay between environmental factors, individual perceptions, and personal traits – Scientific article 1
2.	The multiple aspects that constraint restoration when visiting nearby green spaces – Scientific article 2
Accordingly, this repository includes data and documentation for the following 2 scientific articles:
1.	Scientific article 1. “The role of greenness and road traffic noise for psychological restoration in everyday environments. A participatory mapping approach”. Landscape and Urban Planning, 2025
2.	Scientific article 2. “Perceived constraints for psychological restoration in nearby greenspaces. An exploratory and multi-dimensional approach”. Urban Forestry and Urban Greening, 2025

landscape-perception

display_name: landscape-perception

outdoor-restoration

display_name: outdoor-restoration

ppgis

display_name: ppgis

survey

display_name: survey

traffic-noise

display_name: traffic-noise

en: Swiss-wide survey on restorative places and road traffic noise


maintainer: Beat Frey

en: database conservation info-fauna fauna soil-biodiversity soil-quality soil-dependency ecosystem-protection lichens red-list fungi soil-organisms eco-fauna

en: Overview over the soil dependency and endangerment status of different groups of organisms.

en: Raw dataset of species and their soil dependency as well as endangerment status.

en: Proportion of endangered species grouped by the four soil dependency classes.

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:
Frey B., Maurer C., Schneider K. (2023) Informationen zum Boden anhand der Gebundenheit der Rote-Liste Arten BAFU. Bundesamt für Umwelt BAFU. 26 p.

Please cite this paper together with the citation for the datafile.

Soil is the habitat and basis of life for countless creatures. The great importance of soil organisms for the fertility of our soils is widely recognized, but information is sparse on their distribution and possible endangerment in Switzerland. In the present project, target species, i.e. species that are closely linked to the soil, were identified, and for the the first time, information was gathered on the degree of endangerment of the soil ecosystem in Switzerland on the basis of Red List species. For eleven Red List groups, the species' soil dependency was determined, i.e. whether their life cycle includes stages in or on the soil. The assessment of soil dependency was made using four classes, which enabled the classification not only of insects but also of vertebrates, land snails, lichens and fungi.

conservation

display_name: conservation

database

display_name: database

eco-fauna

display_name: eco-fauna

ecosystem-protection

display_name: ecosystem-protection

fauna

display_name: fauna

fungi

display_name: fungi

info-fauna

display_name: info-fauna

lichens

display_name: lichens

red-list

display_name: red-list

soil-biodiversity

display_name: soil-biodiversity

soil-dependency

display_name: soil-dependency

soil-organisms

display_name: soil-organisms

soil-quality

display_name: soil-quality

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Information on soil based on the soil dependency of the FOEN red list species


en: snow lidar low-cost avalanche monitoring wind-drifted-snow

en:
We developed a monitoring system using low-cost lidar (Livox Avia) and optical sensors, to measure snow depth variations in an avalanche release area at a high spatiotemporal scale (centimeter to low decimeter spatial resolution and hourly temporal resolution). A detailed description of the setup and a first data analysis is published in:
[Ruttner-Jansen, P., Voordendag, A., Hartmann, T., Glaus, J., Wieser, A., & Bühler, Y. (2024). Monitoring snow depth variations in an avalanche release area using low cost lidar and optical sensors. EGUsphere, 2024, 1-20.](https://nhess.copernicus.org/articles/25/1315/2025/)
This dataset contains hourly 3D lidar data of the snow surface at the test site Braemabuel in Davos, Switzerland from the winter season 2023-2024 (23.11.2023 - 14.04.2024). Braema1 is installed at 2191 m a.s.l. in the slope, looking up into the avalache release area, and Braema2 is installed at 2255 m a.s.l at the ridge, looking down. Both scans together cover an area of about 15000 m².
The data is in format ".las" and contains the points in XYZ [m], in the scanner own coordinate system
- scalar fields: intensity, return number, timestamp, tag, label
-- tag: binary code from Livox (see [Livox Avia Manual](https://terra-1-g.djicdn.com/65c028cd298f4669a7f0e40e50ba1131/Download/Avia/Livox%20Avia%20User%20Manual%20202204.pdf))
-- label: marking outliers (filtered by distance and SOR to get snow particles in the air)

avalanche

display_name: avalanche

lidar

display_name: lidar

low-cost

display_name: low-cost

monitoring

display_name: monitoring

snow

display_name: snow

wind-drifted-snow

display_name: wind-drifted-snow

en: Snow depth mapping by lidar station Braemabuel


en: relative-humidity precipitation growing-season-length solar-radiation temperature growing-degree-days soil-water-balance

en: CHELSA-BIOCLIM+

en: Global extented set of bioclimatic variables at different temporal (e.g. monthly, annual, long term normals) resolution in Geotiff format.

format: GeoTIFF

en: CHELSA-BIOCLIM+ Technical Documentation

en: Technical documentation document including the variable names, units, scaling, offset, and background.

en: A multitude of physical and biological processes on which ecosystems and human societies depend are governed by climatic conditions. Understanding how these processes are altered by climate change is central to mitigation efforts. Based on mechanistically downscaled climate data, we developed a set of climate-related variables at yet unprecedented spatiotemporal detail as a basis for environmental and ecological analyses. We created gridded data for near-surface relative humidity (hurs), cloud area fraction (clt), near-surface wind speed (sfcWind), vapour pressure deficit (vpd), surface downwelling shortwave radiation (rsds), potential evapotranspiration (pet), climate moisture index (cmi), and site water balance (swb), at a monthly temporal and 30 arcsec spatial resolution globally starting 1980 until 2018. At the same spatial resolution, we further estimated climatological normals of frost change frequency (fcf), snow cover days (scd), potential net primary productivity (npp), growing degree days (gdd), and growing season characteristics for the periods 1981-2010, 2011-2040, 2041-2070, and 2071-2100, considering three shared socioeconomic pathways (SSP126, SSP370, SSP585) and five Earth system models. Time-series variables showed high accuracy when validated against observations from meteorological stations. Climatological normals were also highly correlated to observations although some variables showed notable biases, e.g., snow cover days (scd). Together, the data sets presented here allow improving our understanding of patterns and processes that are governed by climate, including the impact of recent and future climate changes on the world’s ecosystems and associated services to societies.

growing-degree-days

display_name: growing-degree-days

growing-season-length

display_name: growing-season-length

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

soil-water-balance

display_name: soil-water-balance

solar-radiation

display_name: solar-radiation

temperature

display_name: temperature

en: CHELSA-BIOCLIM+ A novel set of global climate-related predictors at kilometre-resolution


mimetype: text/csv

en:
Attention: this data is not updated after 2022 anymore.
This dataset contains the statistics on the number of avalanche fatalities per **calendar year** in Switzerland. The data collection commences with the beginning of the year 1937. After the completion of a hydrological year, which is the standard way avalanche fatalities are summarized in Switzerland and ends on the 30th of September, the new data is appended to the existing dataset.
If you require annual statistics per hydrological year, please download the data from here: [https://www.envidat.ch/dataset/avalanche-fatalities-switzerland-1936]
The following information is contained (by column and column title):
 - year
 - number of fatalities in the backcountry (=tour)
 - number of fatalities in terrain close to ski areas (=offpiste, away from open and secured ski runs)
 - number of fatalities on transportation corridors including ski runs, roads, railway lines (=transportation.corridors)
 - number of fatalities in or around buildings or in settlements (= buildings)
 - sum (of all four categories)
The definitions for these four categories, as described in the guidelines to the avalanche accident database are:
tour:
activities include back-country ski, snowboard or snow-shoe touring
offpiste:
access from ski area, generally from the top of a skilift with short hiking distances
transportation.corridors (Techel et al., 2016):
people travelling or recreating on open or temporarily closed transportation corridors (e.g. a road user or a skier on a ski run) and people working on open or closed transportation corridors (e.g. maintenance crews on roads, professional rescue teams)
buildings (Techel et al., 2016):
people inside or just outside buildings, and workers on high alpine building sites

avalanche-accident-statistics

display_name: avalanche-accident-statistics

avalanche-fatalities

display_name: avalanche-fatalities

fatalities-in-or-around-buildings

display_name: fatalities-in-or-around-buildings

fatalities-in-settlements

display_name: fatalities-in-settlements

fatalities-in-the-backcountry

display_name: fatalities-in-the-backcountry

fatalities-on-transportation-corridors

display_name: fatalities-on-transportation-corridors

en: Number of avalanche fatalities per calendar year in Switzerland since 1937


maintainer: Felix Kienast

en: spatial-planning social-acceptance optimization wind-power ecosystem-services marxan landscape energy photovoltaic

en:
This is the compressed Shapefile (ESRI) from the MARXAN optimization with 2216 rows (objects) and 18 columns (variables) with sf (simple feature) and data frame classes.
Column description:
X01 = Planning_units (PUs)
X02 = incl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X03 = incl.OS. number of times pu was selected in MARXAN when optimized for social costs
X04 = incl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X05 = incl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X06 = incl.OS. total energy (MWh/a)
X07 = incl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X08 = incl.OS. energy from wind turbines (MWh/a)
X09 = incl.OS. energy from ground-mounted PV infrastructure (MWh/a)

X10 = excl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X11 = excl.OS. number of times pu was selected in MARXAN when optimized for social costs
X12 = excl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X13 = excl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X14 = excl.OS. total energy (MWh/a)
X15 = excl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X16 = excl.OS. energy from wind turbines (MWh/a)
X17 = excl.OS. energy from ground-mounted PV infrastructure (MWh/a)
geometry = Simple feature XY geometry (SFC_POINT) each representing the center of a 4x4km planning unit (PU) in EPSG 21781 (CRS CH1903 / LV03).

en:
This study examines the siting scenarios for renewable energy infrastructure (REI) in Switzerland, incorporating the external costs of ecosystem services and, innovatively, social preferences. This approach challenges the prevalent techno-economic siting paradigm, which often overlooks these externalities. To minimize the external costs of the scenarios while maximizing energy yield, Marxan, an optimization software, was employed.
MARXAN was run for 2 versions: a) without ground-mounted open space PV infrastructure (excl. OS) and b) with ground-mounted open space PV infrastructure (incl. OS). In each version optimization was done using ecological costs (ECUess) or social costs (ECUsoc) in a regular grid of 4x4km (planning unit).

File:
PU_data.shp: compressed Shapefile (ESRI) from the MARXAN optimization with 2216 rows (objects) and 18 columns (variables) with sf (simple feature) and data frame classes.

Headers are described below:
X01 = Planning_units (PUs)

X02 = incl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X03 = incl.OS. number of times pu was selected in MARXAN when optimized for social costs
X04 = incl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X05 = incl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X06 = incl.OS. total energy (MWh/a)
X07 = incl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X08 = incl.OS. energy from wind turbines (MWh/a)
X09 = incl.OS. energy from ground-mounted PV infrastructure (MWh/a)

X10 = excl.OS. number of times pu was selected in MARXAN when optimized for ecological costs
X11 = excl.OS. number of times pu was selected in MARXAN when optimized for social costs
X12 = excl.OS. ecological costs (ECUess) of pu when realizing the total energy (normalized)
X13 = excl.OS. social costs (ECUsoc) of pu when realizing the total energy (normalized)
X14 = excl.OS. total energy (MWh/a)
X15 = excl.OS. energy from roof-mounted PV infrastructure (MWh/a)
X16 = excl.OS. energy from wind turbines (MWh/a)
X17 = excl.OS. energy from ground-mounted PV infrastructure (MWh/a)

geometry = Simple feature XY geometry (SFC_POINT) each representing the center of a 4x4km planning unit (PU) in EPSG 21781 (CRS CH1903 / LV03).

For MARXAN optimizations (for meaning of standard files in MARXAN see https://scholar.google.ch/scholar_url?url=https://courses.washington.edu/cfr590/software/Marxan1810/marxan_manual_1_8_2.pdf&hl=de&sa=X&ei=NAWHZI6JJ8PFmAGMo47oDQ&scisig=AGlGAw-DBrsV4kUzkR6GkN1jtG66&oi=scholarr), pu_data.shp was used to generate MARXAN files input.dat, pu.dat, puvfeat.dat, spec.dat.
Coordinate Reference System: CH1903 / LV03. EPSG: 21781.

ecosystem-services

display_name: ecosystem-services

energy

display_name: energy

landscape

display_name: landscape

marxan

display_name: marxan

optimization

display_name: optimization

photovoltaic

display_name: photovoltaic

social-acceptance

display_name: social-acceptance

spatial-planning

display_name: spatial-planning

wind-power

display_name: wind-power

en: Optimizing renewable energy siting in the Swiss landscape


maintainer: Stephan Zimmermann

en: soil nutrient sustainability beech mass-balance

en: With this study, our aim was to estimate the nutrient fluxes relevant for assessing nutrient sustainability as accurately as possible and to calculate nutrient balances for alternative forest management scenarios. Furthermore, we tested whether mapping units from existing geologic maps can serve as a basis for forest practitioners to estimate nutrient sustainability or whether more detailed data is needed. Positive fluxes include deposition and weathering, while negative fluxes include losses due to leaching and nutrient removal through timber harvesting in the balance. Weathering and leachate losses were modeled with a geochemical model. The SwissStandSim model was used to simulate the biomass growth under different harvesting and silvicultural strategies, allowing sustainability to be assessed for each nutrient at a given intensity of use. This assessment was made per rotation period of 100 years based on two criteria: i) nutrient supply; and ii) total stocking volume.

beech

display_name: beech

mass-balance

display_name: mass-balance

nutrient

display_name: nutrient

soil

display_name: soil

sustainability

display_name: sustainability

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Nutrient sustainability in beech forests


en: single-tree tree-volume biomass forest-inventory lidar terrestiral-laserscanning

en: Individual tree parameters and volume estimates based on TLS point clouds and allometric models

en:
"ASM" denotes volume estimates calculated by allometric scaling models (as used in Swiss NFI), based on tree height, DBH and D7.
"QSM" denotes volume estimates derived from TLS point clouds by quantitative structure models (QSM).
The remaining variables are geometrical features directly calculated from single tree TLS point clouds.
For more detailed variable descriptions see related publication.

en:
 Dataset
This dataset is based on terrestrial laser scanning (TLS) data acquired during winter 2020/2021 in leaf-off conditions, with a Leica BLK 360 instrument following a tree-centric scanning pattern.
The data was acquired on two sites (47.42°N 8.49°E and 47.504°N, 7.78°E), both of which were managed mixed temperate forest stands.
Individual trees were semi-automatically segmented from the co-registered TLS point clouds.

 Background
Accurate estimates of individual tree volume or biomass within forest inventories are essential for calibration and validation of biomass mapping products based on Earth observation data.
Terrestrial laser scanning (TLS) enables detailed and non-destructive volume estimation of individual trees, with existing approaches ranging from simple geometrical features to virtual 3D reconstruction of entire trees. Validating such approaches with weight measurements is a key step before the integration of TLS or other close-range technologies into operational applications such as forest inventories.
In this study, we firstly evaluate individual tree volume estimation approaches based on 3D reconstruction through quantitative structure models (QSM) against destructive reference data of 60 trees and compare them to operational allometric scaling models (ASM).
Secondly, we determine the explanatory power of TLS-derived geometric parameters regarding total tree, stem, coarse wood and fine branch volume.

biomass

display_name: biomass

forest-inventory

display_name: forest-inventory

lidar

display_name: lidar

single-tree

display_name: single-tree

terrestiral-laserscanning

display_name: terrestiral-laserscanning

tree-volume

display_name: tree-volume

en: Individual tree TLS point clouds for tree volume estimation


en: avalanche snow-stability-evaluation snowpack avalanche-forecast snow

en: SNOWPACK simulations

en: This dataset contains all SNOWPACK simulations, including input files, setup and output files.

en: Manually observed snow profiles

en: Manually observed snow profiles as csv-files containing depth [cm], thickness [cm], density [kg m-3], hand hardness, first grain type, second grain type, first grain size [mm], and second grain size [mm] of each layer.

en: Stability tests

en: Stability tests including csv-files with CT, ECT and PST experiments for each year and each field site.

en: README

en: README file explaining data structure and content

en: Extracted data

en: Extracted data contain validation and results published in Richter et al. (2019).

en:
To validate the critical crack length as implemented in the snow cover model SNOWPACK, PST experiments were conducted for three winter seasons (2015-2017) at two field site above Davos, Switzerland. This dataset contains manually observed snow profiles and stability tests. Furthermore, corresponding SNOWPACK simulations are included.
These data were analyzed and results were published in Richter et al. (2019).

Please refer to the Readme file for further details on the data.

These data are the basis of the following publication:
Richter, B., Schweizer, J., Rotach, M. W., and van Herwijnen, A.: Validating modeled critical crack length for crack propagation in the snow cover model SNOWPACK, The Cryosphere, 13, 3353–3366, https://doi.org/10.5194/tc-13-3353-2019, 2019.

avalanche

display_name: avalanche

avalanche-forecast

display_name: avalanche-forecast

snow

display_name: snow

snow-stability-evaluation

display_name: snow-stability-evaluation

snowpack

display_name: snowpack

en: Validating and improving the critical crack length in SNOWPACK


data-interactive-avalanche-segmentation

maintainer: Elisabeth D. Hafner

title_for_slug: data-interactive-avalanche-segmentation

en: interactive deep-learning snow segmentation avalanche

en:
Images and corresponding avalanche annotations used for interactive avalanche segmentation:
SLF train, vali and test
WebNew
GroundPic
UserPic
UIBK dataset: List of images used
Pictures are from SLF (mostly from the Dischma Cams) if not otherwise indicated. If used, the data needs to be properly cited!

deep-learning

display_name: deep-learning

interactive

display_name: interactive

segmentation

display_name: segmentation

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data interactive avalanche segmentation


en: emerald-ash-borer invasive-species defense-chemistry cross-resistance fraxinus intraspecific-variation ash-dieback

en: Raw data-Publication cross-resistance in ash-New Phytologist

en:
What are the research data files about: Raw data on perfomance (dry weight, development and mortality) of emerald ash borer larvae used in published bioassays. Raw data on ash dieback leasion lenghts. Raw data on untargeted and targeted specialized ash metabolites.
Which methods were used: Bioassays in greenhouses and climate chambers to collect data on emerald ash borer and ash dieback perfomance. Phytochemical analyses on ash phloem for quantifiying specialized metabolites
When and where was the data created / extracted: Summer 2020-2021

en:
 What are the research data files about: Raw data on perfomance (dry weight, development and mortality) of emerald ash borer larvae used in published bioassays. Raw data on ash dieback leasion lenghts. Raw data on untargeted and targeted specialized ash metabolites.

Which methods were used: Bioassays in greenhouses and climate chambers to collect data on emerald ash borer and ash dieback perfomance. Phytochemical analyses on ash phloem for quantifiying specialized metabolites.

When and where was the data created / extracted: Summer 2020-2021

ash-dieback

display_name: ash-dieback

cross-resistance

display_name: cross-resistance

defense-chemistry

display_name: defense-chemistry

emerald-ash-borer

display_name: emerald-ash-borer

fraxinus

display_name: fraxinus

intraspecific-variation

display_name: intraspecific-variation

invasive-species

display_name: invasive-species

en: Raw data-Publication cross-resistance in ash - New Phytologist


urban-birds-point-counts-data

title_for_slug: urban-birds-point-counts-data

en: birds biodiversity periurban urban environmental-gradients spatially-distributed-sampling

en:
The study area included the cities of Basel, Lugano and Zurich. The sampling design reflected four main city districts related to four categories of tree cover (Figure 1): 1) industrial/commercial areas, 0-20% tree cover; 2) residential areas, 20-40% tree cover; 3) urban parks and cemeteries, 40-60% tree cover; 4) peri-urban forests (natural/semi-natural forests), 60-100% tree cover. The tree cover gradient was evaluated across a square grid with a square side length of 100 m. For each square, we evaluated the area covered by urban trees using the Urban Atlas Street Tree Layer 2018 (European Union’s Copernicus Land Monitoring Service information, 2021).
In each city, we established eight transects of 1.2 km, two for each tree cover category. Transects crossed contiguous grid squares belonging to the same tree cover categories as much as possible. We performed aural-visual point counts of birds every 200 m along each transect (six points per transect) during the breeding season (April-June 2024) (Bibby et al., 2000). The transects were walked at the time of highest activity of birds, which is from thirty minutes after sunrise until 4 hours later. Each transect was walked twice, 20-60 days apart, to account for imperfect detection of birds and sample completeness (Balestrieri et al., 2017; Kéry et al., 2005).

biodiversity

display_name: biodiversity

birds

display_name: birds

environmental-gradients

display_name: environmental-gradients

periurban

display_name: periurban

spatially-distributed-sampling

display_name: spatially-distributed-sampling

urban

display_name: urban

en: Urban birds point counts data


maintainer: Frank Techel

en: avalanche-fatalities avalanche-accident long-term-trends avalanche-statistics avalanche-accident-statistics

en: Data avalanche fatalities 1969/1970 - 2014/2015

en: The data comprises avalanche fatality data from the Alpine regions in the seven countries Austria, France, Germany, Italy, Liechtenstein, Slovenia, and Switzerland.

en:
During the last 45 years, about 100 people lost their lives in avalanches in the European Alps each year. Avalanche fatalities in settlements and on transportation corridors have considerably decreased since the 1970s. In contrast, the number of avalanche fatalities during recreational activities away from avalanche-secured terrain doubled between the 1960s and 1980s and has remained relatively stable since, despite a continuing strong increase in winter backcountry recreational activities.

Data complementing Figure 2 in:
_"Avalanche fatalities in the European Alps: long-term trends and statistics"_, by Techel, F., Jarry, F., Kronthaler, G., Mitterer, S., Nairz, P., Pavšek, M., Valt, M., and Darms, G.

Data description:
please refer to section 2 (Data and Methods) in the mentioned publication

avalanche-accident

display_name: avalanche-accident

avalanche-accident-statistics

display_name: avalanche-accident-statistics

avalanche-fatalities

display_name: avalanche-fatalities

avalanche-statistics

display_name: avalanche-statistics

long-term-trends

display_name: long-term-trends

en: Avalanche fatalities in the European Alps (1969/1970 - 2014/2015)


maintainer: Brian W. McArdell

en: debris-flow monitoring-station illgraben force-plate magnitude

en: Illgraben debris-flow characteristics 2023

en:
List of key debris flow variables from the WSL Illgraben monitoring station (2023) such as occurrence date and time, peak flow depth, peak flow velocity, total volume and bulk density.
This table contains values based on our current analysis methods. The list will be updated annually after each debris flow season, and as our methods continue to improve, individual values may change slightly in the future.

debris-flow

display_name: debris-flow

force-plate

display_name: force-plate

illgraben

display_name: illgraben

magnitude

display_name: magnitude

monitoring-station

display_name: monitoring-station

educ

en: Education, culture and sport


maintainer: Roman Zweifel

en: dbh carbon-dioxide stem-growth forest-function forest-area tree-stem forest carbon-cycle forest-monitoring eddy-covariance flux seehornwald subalpine carbon-storage co2 dendrometer ecosystem-functioning water-relations sap-flow automated-monitoring ecophysiology ilter icp-forests open-data biomass climate-growth climate-change atmospheric-conditions metadata treenet forest-characteristics picea-abies twd carbon-sequestration davos eddy-covariance-measurements forest-ecosystems forest-biomass forest-canopy lwf forest-dynamics icos

en: Readme

en: Collection of files with information about the research site Seehornwald Davos CH-DAV

en: Site description of the Seehornwald Davos (CH-DAV) research site. The material provided offers information on the biomass and growth of trees in CH-DAV, including supporting materials such as maps, geolocations and analyses. CH-DAV is part of networks such as ICOS, LWF, TreeNet, ICPForests and is dedicated to forest monitoring and research.

atmospheric-conditions

display_name: atmospheric-conditions

automated-monitoring

display_name: automated-monitoring

biomass

display_name: biomass

carbon-cycle

display_name: carbon-cycle

carbon-dioxide

display_name: carbon-dioxide

carbon-sequestration

display_name: carbon-sequestration

carbon-storage

display_name: carbon-storage

climate-change

display_name: climate-change

climate-growth

display_name: climate-growth

davos

display_name: davos

dbh

display_name: dbh

dendrometer

display_name: dendrometer

ecophysiology

display_name: ecophysiology

ecosystem-functioning

display_name: ecosystem-functioning

eddy-covariance

display_name: eddy-covariance

eddy-covariance-measurements

display_name: eddy-covariance-measurements

flux

display_name: flux

forest

display_name: forest

forest-area

display_name: forest-area

forest-biomass

display_name: forest-biomass

forest-canopy

display_name: forest-canopy

forest-characteristics

display_name: forest-characteristics

forest-dynamics

display_name: forest-dynamics

forest-ecosystems

display_name: forest-ecosystems

forest-function

display_name: forest-function

forest-monitoring

display_name: forest-monitoring

icos

display_name: icos

icp-forests

display_name: icp-forests

ilter

display_name: ilter

lwf

display_name: lwf

metadata

display_name: metadata

open-data

display_name: open-data

picea-abies

display_name: picea-abies

sap-flow

display_name: sap-flow

seehornwald

display_name: seehornwald

stem-growth

display_name: stem-growth

subalpine

display_name: subalpine

tree-stem

display_name: tree-stem

treenet

display_name: treenet

twd

display_name: twd

water-relations

display_name: water-relations

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Site description Davos Seehornwald CH-DAV


en: biobank conservation permafrost arctic collections active-layer fungi bacteria plastisphere extreme-habitat glaciers swiss-alps biodiversity

en: Complete collection of bacterial and fungal isolates from Permafrost, active layer and glaciers in Switzerland, Svalbard, northern Greenland and Russia.

en:
The cold habitats of the Swiss Alps and the Arctic are undergoing change and are at risk of disappearing completely or partially in the future. Along with them, a poorly known diversity of microorganisms that have adapted to life in these supposedly hostile places. By cryopreserving microorganisms from these habitats, some of today's biodiversity can be preserved in biobanks.
The collection contains cryopreserved bacteria and fungi isolated from permafrost and active layer of Muot da Barba Peider and Val Lavirun, from the glacier forefield and glacier toe of the Damma glacier, from active layer in northern Greenland and from plastic waste in Svalbard, as well as isolates from plastic incubations in Muot da Barba Peider, northern Greenland and arctic Russian soils.
Project overview: https://www.wsl.ch/en/projects/life-at-chilly-temperatures-a-collection-of-microorganisms-from-extreme-habitats/

active-layer

display_name: active-layer

arctic

display_name: arctic

bacteria

display_name: bacteria

biobank

display_name: biobank

biodiversity

display_name: biodiversity

collections

display_name: collections

conservation

display_name: conservation

extreme-habitat

display_name: extreme-habitat

fungi

display_name: fungi

glaciers

display_name: glaciers

permafrost

display_name: permafrost

plastisphere

display_name: plastisphere

swiss-alps

display_name: swiss-alps

en: EnviDat: the Environmental Data Portal

en: Life at chilly temperatures - A collection of microorganisms from extreme habitats


maintainer: Matthias Bürgi

en: pathways scenarios land-change land-use-modelling agriculture

en: This dataset contains the spatial layers showing future land change pathways in Europe between 2015 and 2050, as simulated by the CLUMondo model according to the Agricultural Futures Framework (AFF) scenarios.

en:
This dataset contains the spatial layers showing future land change pathways in Europe between 2015 and 2050, as simulated by the CLUMondo model and according to the Agricultural Futures Framework (AFF) scenarios.

Three scenarios are included:
- Land for Food and Land for Nature (LFLN)
- Land as Culture (LaC)
- Land for Society (LfS)

agriculture

display_name: agriculture

land-change

display_name: land-change

land-use-modelling

display_name: land-use-modelling

pathways

display_name: pathways

scenarios

display_name: scenarios

en: AFF agricultural land change scenarios in Europe 2015-2050


en: green-spaces bettergardens urban-ecology zurich better-gardens plant-pollinator-interactions symphytum-officinale plant-insect-interaction gardens urbanisation pollination daucus-carota urban-biodiversity pollinator-experiment raphanus-sativus garden-experiment onobrychis-viciifolia

en:
This repository includes all data presented in the preprint as part of the first submission to Data in Brief:
Reji Chacko, M., Moretti, M., and Frey, D. (2025). A comprehensive dataset on pollinator diversity, visitation rates, individual-based traits, and pollination success across four plant species in an urban garden experiment. EcoEvoRxiv. https://doi.org/10.32942/X2J645
The repository contains eight directories, organised as follows:
data/
├── 01_metadata/  Detailed descriptions of each dataset in this repository
│  └── data_description.xlsx
├── 02_sampling_protocol/  Field sampling protocols in German (original) and English (translation)
│  ├── protocol_english.pdf
│  └── protocol_german.pdf
├── 03_site_data/  Garden site coordinates
│  └── garden_site_coordinates.csv
├── 04_taxonomic_data/  Taxonomic checklist of observed species
│  └── taxa_checklist.csv
├── 05_field_data/  Raw field sampling data
│  └── raw_sampling_data.xlsx
├── 06_trait_data/  Individual-level traits and flower visitation matrix
│  ├── individual_traits.csv
│  └── species_temporal_flower_visitation_matrix.csv
├── 07_pollination_success/  Seed and fruit set per phytometer species
│  ├── daucus_carota_seed_set.csv
│  ├── onobrychis_viciifolia_fruit_set.csv
│  ├── raphanus_sativus_fruit_set.csv
│  ├── raphanus_sativus_seed_set.csv
│  ├── symphytum_officinale_fruit_set.csv
│  └── symphytum_officinale_seed_set.csv
├── 08_scripts/  R scripts to reproduce figures and Table 2 from the paper
│  ├── figure_1.R
│  ├── figure_2.R
│  ├── figure_3.R
│  ├── figure_4.R
│  └── table_2.R
└── README.txt
Note: The metadata Excel file contains a separate sheet describing each dataset, so individual file descriptions are not repeated here.

en: This dataset contains detailed records of pollinator communities and plant reproductive outcomes from an urban garden experiment in Zurich, Switzerland. It includes flower visitation frequency and pollinator species richness for four insect-pollinated plant species observed across 24 home gardens. The dataset spans 167 pollinator taxa, with over 5,700 individuals identified, mostly to species or genus level. It features individual-level trait measurements for pollinators, such as body size and tongue lengths. Measures of pollination success, including seed and fruit set, are provided for each plant species.

better-gardens

display_name: better-gardens

bettergardens

display_name: bettergardens

daucus-carota

display_name: daucus-carota

garden-experiment

display_name: garden-experiment

gardens

display_name: gardens

green-spaces

display_name: green-spaces

onobrychis-viciifolia

display_name: onobrychis-viciifolia

plant-insect-interaction

display_name: plant-insect-interaction

plant-pollinator-interactions

display_name: plant-pollinator-interactions

pollination

display_name: pollination

pollinator-experiment

display_name: pollinator-experiment

raphanus-sativus

display_name: raphanus-sativus

symphytum-officinale

display_name: symphytum-officinale

urban-biodiversity

display_name: urban-biodiversity

urban-ecology

display_name: urban-ecology

urbanisation

display_name: urbanisation

zurich

display_name: zurich

en: Comprehensive dataset of pollinator diversity and visitation rates with individual-based traits and pollination success across four urban garden plant species


maintainer: Merin Reji Chacko

en: dna-metabarcoding spatial-ecology biodiversity-assessment biomonitoring environmental-dna

en: Field Metadata

en: Information concerning the locations and times of sampling, as well as the identity of the samplers and relevant comments.

en: Genomic data

en: Fastq files, primer descriptions and the final output dataset.

en: Analysis and Figures

en: This zipped file includes R scripts and the datasets required to run the analyses. A README describes the columns in each dataset.

en: This dataset contains the results of a five-day field excursion which the extent to which eDNA sampling can capture the diversity of a region with highly heterogeneous habitat patches across a wide elevation gradient through multiple hydrological catchments of the Swiss Alps. Using peristaltic pumps, we filtered 60 L of water at five sites per catchment for a total volume of 1 800 L. Using an eDNA metabarcoding approach focusing on vertebrates and plants, we detected 86 vertebrate taxa spanning 41 families and 263 plant taxa spanning 79 families across ten catchments. This dataset includes two sets of data. The first (Genomic data) includes all the necessary data for the bioinformatic pipeline, whereas the second (Analysis Figures) contains tidied data and scripts for the reproduction of all figures/analyses in the article describing this study.

biodiversity-assessment

display_name: biodiversity-assessment

biomonitoring

display_name: biomonitoring

dna-metabarcoding

display_name: dna-metabarcoding

environmental-dna

display_name: environmental-dna

spatial-ecology

display_name: spatial-ecology

educ

en: Education, culture and sport

en: Vertebrate and plant taxa recovered from 10 catchments in Vaud using an eDNA-metabarcoding approach


en: switzerland biogas bioenergy manure review

en: Production de biogaz à partir d’engrais de ferme en Suisse

en: L'objectif de ce livre blanc est de fournir aux décideurs, aux administrations et aux parties prenantes les résultats de recherche les plus récents afin de promouvoir l'utilisation optimale de la bioénergie issue des engrais de ferme dans la transition énergétique suisse. A cette fin, les résultats du centre de compétence suisse pour la recherche en bioénergie - SCCER BIOSWEET - sont résumés et présentés dans un contexte plus large. Si rien d'autre n'est mentionné, les résultats se réfèrent à la Suisse et, dans le cas de la matière première, aux potentiels nationaux de biomasse.

bioenergy

display_name: bioenergy

biogas

display_name: biogas

manure

display_name: manure

review

display_name: review

switzerland

display_name: switzerland

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


maintainer: Armin Sigmund

en: atmospheric-turbulence antarctica drifting-snow blowing-snow meteorological-measurements

en: (f) Sonic data 3

en: Ultrasonic anemometer data in the period from 21 to 30 October 2000.

en: (m) Weather observations

en: Weather elements and phenomena observed by the Japanese Meteorological Agency.

en: (a) Metadata

en: General and specific metadata for all files.

en: (d) Sonic data 1

en: Ultrasonic anemometer data in the period from 30 September to 11 October 2000.

en: (e) Sonic data 2

en: Ultrasonic anemometer data in the period from 11 to 21 October 2000.

en: (c) SPC average profiles

en: Average vertical profiles of the horizontal snow mass flux, particle number size distribution, and mean and standard deviation of the particle diameter.

en: (j) Spike percentage

en: Percentage of spikes removed from the ultrasonic anemometer data per 5-min interval.

en: (b) SPC time series

en: Data from the snow particle counters with 1-s intervals.

en: (l) AWS data

en: Automatic weather station data with 10-min intervals.

en: (k) Wind speed profiles

en: Average vertical profiles of horizontal wind speed based on the ultrasonic anemometer data.

en: (g) Sonic data 4

en: Ultrasonic anemometer data in the period from 30 October to 6 November 2000.

en: (h) Sonic data 5

en: Ultrasonic anemometer data in the period from 6 to 13 November 2000.

en: (i) Sonic data 6

en: Ultrasonic anemometer data in the period from 13 to 18 November 2000.

en:
This data was collected at Mizuho Station (44.315°E, 70.71°S, 2230 m a.s.l.), East Antarctica, from **30 September to 22 November 2000** during the 41st Japanese Antarctic research expedition. Vertical profiles of the horizontal mass flux and particle number size distribution of drifting and blowing snow were measured in the lowest 10 m of the atmosphere using four **snow particle counters** (SPCs). Three 3-dimensional **ultrasonic anemometers** were deployed in the lowest 25 m of the atmosphere to record the wind velocity components and sonic temperature at a high frequency of 100 Hz. Additionally, an **automatic weather station** provided air temperature, relative humidity, air pressure, shortwave and longwave downward and upward radiation fluxes, surface temperature, snow temperatures at depths of 0.1 and 0.4 m below the surface, wind speed, and wind direction. The data is complemented by **weather observations** performed twice to eleven times per day by the Japanese Meteorological Agency.
Most of the time, the lowest SPC was situated at a height of 0.05 or 0.1 m above the snow surface. During certain periods called profile runs, the height of the lowest SPC was systematically varied between 0.02 and 0.2 m to increase the vertical resolution of the measured profiles. The other SPC's were installed at fixed heights of 1.1, 3.1, and 9.6 m. During each profile run, the lowest SPC was kept at a specific height for approximately 10 min before changing the height. If the wind speed remained approximately constant throughout a profile run, the data was used to compute the average snow-transport profile in that period. In total, 24 of such average profiles were obtained. A part of these SPC measurements are discussed in Nishimura and Nemoto (2005).
The ultrasonic anemometers were placed at heights of 0.3, 1, and 25 m. However, the height of the lowest ultrasonic anemometer was changed several times in the measurement period and ranged from 0.05 to 0.32 m. On top of that, 19 short periods (each lasting 15 to 160 min) were used to systematically vary the height of the lowest ultrasonic anemometer and thus increase the vertical resolution of the measured wind speed profile. Occasionally, drifting and blowing snow particles perturbed the ultrasonic measurement signal and electrically-charged particles caused an electric charge of the anemometers, leading to artifacts such as spikes and dropouts in the measured time series. These artifacts were largely removed and replaced by NaN, using the statistical spike removal algorithm of Mauder et al. (2013). However, the artifact removal was sometimes incomplete for the lowest anemometer because of very intense snow transport close to the surface. While temporal averages are barely affected by the artifacts, the high-frequency data of the lowest anemometer should be used carefully when computing turbulent fluxes using the eddy-covariance method. Further important explanations are provided in the file Readme.pdf in data resource '(a) Metadata'.
References
- Mauder, M., Cuntz, M., Drüe, C., Graf, A., Rebmann, C., Schmid, H.P., Schmidt, M., Steinbrecher, R. (2013). A strategy for quality and uncertainty assessment of long-term eddy-covariance measurements. Agric For Meteorol 169:122–135. https://doi.org/10.1016/j.agrformet.2012.09.006
- Nishimura, K., Nemoto M. (2005). Blowing snow at Mizuho station, Antarctica. Phil. Trans. R. Soc. A. 363: 1647–1662. https://doi.org/10.1098/rsta.2005.1599

antarctica

display_name: antarctica

atmospheric-turbulence

display_name: atmospheric-turbulence

blowing-snow

display_name: blowing-snow

drifting-snow

display_name: drifting-snow

meteorological-measurements

display_name: meteorological-measurements

en: Profile measurements of snow transport and micrometeorology at Mizuho Station in Antarctica


maintainer: Elisabeth Hafner

en: avalanche-mapping avalanche-size-estimation avalanche remote-sensing reliability

en: AvalancheReliabilityData

en: The .zip contains all data used to conduct the reliability study as well as the results, a detailed description of the included files is contained in the included pdf. All geospatial data is provided in the Swiss Coordinate System: CH1903+ / LV95 (EPSG 2056). For any use of the data the proper citation provided is obligatory!

mimetype: application/x-zip-compressed

en:
This dataset contains the data used and collected to investigate the reliability of avalanche size estimates and avalanche outlines (see related publications). Namely this is

 Avalanche size estimates

* the 10 pictures depicting avalanches
* the survey results from the 170 participants

 Avalanche outlines mapped from oblique photographs
* the pictures of the six avalanches
* the avalanche outlines mapped by the 10 participants
* the reference mapped from the georeferenced photographs

 Avalanche outlines from remotely-sensed imagery
* the orthophotos in the four different resolutions (2m, 1m, 50cm, 25cm)
* the area of interest (AoI) delimiting the research area
* the avalanche mappings in each resolution for all five participants
* the shade masks used to separate illuminated and shaded areas

The acquisition of the orthophotos has been partially supported by the Swiss National Science Foundation (SNF; Grant N°200021_172800).

avalanche

display_name: avalanche

avalanche-mapping

display_name: avalanche-mapping

avalanche-size-estimation

display_name: avalanche-size-estimation

reliability

display_name: reliability

remote-sensing

display_name: remote-sensing

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data reliability study: avalanche size estimates and outlines


en: urban fungal-pathogen urban-biodiversity insects urban-ecology fungi birds biodiversity

en: Data tables including individual bird data with biometry, prey species from faecal samples, and fungi species from swab samples.

en:
We captured birds in urban parks and peri-urban forests in the cities of Lugano and Zurich. The urban sites were located in an urban forest (Lugano) and in a cemetery (Zurich), and the bird assemblages were comparable with those of the surrounding forests.
We captured individual birds during sessions lasting multiple days using mist-nets, concentrating the activities within 3-4 hours after sunrise and before sunset. We extracted birds from nets using single-use nitrile gloves and gently wiped their body parts with a dry foam swab MW940 (Medical Wire & Equipment), which was then placed in a screw-capped tube (2 ml), which was previously filled with 1 ml ethanol puriss. (Sigma-Aldrich) under sterile conditions.Then, we marked each bird with an alphanumeric leg band, identified the species, determined the sex and age whenever possible, measured for relevant biometrics (e.g. wing chord), the amount of body fat and pectoral muscle (i.e. body condition), and weighed.
Afterwards, we placed each bird in a disposable paper bag within a cotton bag that ensured respiration and left it for few minutes in a safe and calm place to allow for defecation and the collection of faecal samples. The faecal sample was collected from insectivorous and omnivorous birds, and few granivorous birds that are known to occasionally eat invertebrates, such as the house sparrow Passer domesticus.
After releasing the bird, we stored the faecal sample in a screw-capped tube (2 ml), which was previously filled with 1 ml ethanol puriss. (Sigma-Aldrich) under sterile conditions. We wore single-use nitrile gloves and used sterile toothpicks to collect solid samples. The tubes were initially stored in the refrigerator during the field campaign and no later than seven days after collection at -20°C until prepared for DNA extraction.
DNA extraction and library preparation was performed at WSL Phytopathology facilites, Sequencing was performed at Lausanne Genomic Technologies Facility (University of Lausanne; [https://wp.unil.ch/gtf/](https://wp.unil.ch/gtf/)) on an AVITI benchtop sequencing system (Element Biosciences). Bioinformatics was performed at the Genetic Diversity Center (ETH Zurich) using a custom pipeline.

biodiversity

display_name: biodiversity

birds

display_name: birds

fungal-pathogen

display_name: fungal-pathogen

fungi

display_name: fungi

insects

display_name: insects

urban

display_name: urban

urban-biodiversity

display_name: urban-biodiversity

urban-ecology

display_name: urban-ecology

en: Urban bird capture data with prey species and fungal community


weissfluhjoch-dataset-for-esm-snowmip

maintainer: Nander Wever

title_for_slug: weissfluhjoch-dataset-for-esm-snowmip

en: weissfluhjoch snow-models esm-snowmip snow-depth snow

en: Dataset Weissfluhjoch for ESM-SnowMIP

en: ini file

en: This ini file is required by data-converter from MeteoIO version 1887 (http://models.slf.ch/p/meteoio/)

en: Conversion script

en:
Use this script to convert WFJ_optimaldataset_v6.smet to wfj.smet, the file that is used for the ESM-SnowMIP project. It also requires the file: WFJ_AirPressure_Data.zip

Use: bash create_wfj_dataset.sh > input/wfj.smet

mimetype: text/x-sh

en: This Weissfluhjoch dataset is a processed version of the Weissfluhjoch dataset version 6 from https://doi.org/10.16904/6. This dataset was specially created for the ESM-SnowMIP project. Here it is documented how this dataset has been created.

esm-snowmip

display_name: esm-snowmip

snow

display_name: snow

snow-depth

display_name: snow-depth

snow-models

display_name: snow-models

weissfluhjoch

display_name: weissfluhjoch

en: Weissfluhjoch dataset for ESM-SnowMIP


maintainer: Virginie Marques

en: edna marine laperouse fish-composition coral-reef teleo indian-ocean environmental-dna

en: Data access

en: Please use cyberduck to download for the moment

en:
Fish environmental DNA data set collected in the shallow seamount of La Pérouse located between Madagascar and Réunion Island

In 2019, we sampled the shallow seamount of La Pérouse, located between Madagascar and Réunion Island in the WIO. La Pérouse is an extinct volcano with a summit depth at 60 m below the sea surface. The plateau of the summit has a maximum length of 12 km and a maximum width of 4 km. One side of the seamount might have collapsed in the past, leading to a less common crescent-shaped summit. The abyssal plains that surround this isolated pinnacle are at a depth of 5000 m. Despite its proximity to Réunion Island (160 km northwest), La Pérouse and its surroundings are still poorly studied.
To sample eDNA in this location we used a submersible pump (Subspace, Geneva, Switzerland; nominal flow of ~ 1.0 L/min) to collect samples at various depths during close circuit rebreather dives. The pump has an internal battery and can be activated underwater allowing in situ filtration directly at the targeted habitat and depth. The filtration lasted for 30 min to collect a total water volume of ~ 30 L. During close circuit rebreather dives, water samples from various depths, ranging from 60 to 140 m below the sea surface, were collected using only the Submersible method (eight stations: no replicates). Out of the eight water samples, six were collected during the day, while two were collected at night (IS2_1 at 62 m and IS7_1 at 100–125 m). We applied this filtration protocols to collect and filter water throughout a VigiDNA® 0.2 μM cross-flow filtration capsule (SPYGEN, le Bourget du Lac, France) using disposable sterile tubing for each filtration capsule. After the filtration process, the remaining water in the capsules was emptied. The capsules were then filled with 80 ml of lysis conservation buffer (CL1 buffer SPYGEN, le Bourget du Lac, France) and stored at room temperature in the dark. At La Pérouse, a total of eight water samples were collected during the MONT LA PÉROUSE expedition (https://gombessa-expeditions.com/mont-la-perouse/) on board the ship La Curieuse to the seamount La Pérouse from October 27th to November 5th 2019. We followed a strict contamination control protocol in both field and laboratory stages. Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

coral-reef

display_name: coral-reef

edna

display_name: edna

environmental-dna

display_name: environmental-dna

fish-composition

display_name: fish-composition

indian-ocean

display_name: indian-ocean

laperouse

display_name: laperouse

marine

display_name: marine

teleo

display_name: teleo

en: Environmental DNA Marine France LaPerouse 2019


bryophytes-of-europe-traits-bet-dataset

title_for_slug: bryophytes-of-europe-traits-bet-dataset

en: hornworts mosses liverworts indicator-values bioclimatic-variables life-history-traits iucn red-list

en: PDF including the (trait) explanations.

en: Text file including the BET dataset.

en: Excel file including the BET dataset and (trait) explanations.

en: The Bryophytes of Europe Traits (BET) dataset includes values for 65 biological and ecological traits and 25 bioclimatic variables for all 1816 bryophytes included in the European Red List (Hodgetts et al. 2019). The traits are compiled from several regional trait datasets and manually complemented using Floras, species-specific literature and expert knowledge. The bioclimatic variables are calculated using the European range of each species. Details regarding the trait compilation and extraction of bioclimatic variables can be found in the corresponding data paper (Van Zuijlen et al. 2023).

bioclimatic-variables

display_name: bioclimatic-variables

hornworts

display_name: hornworts

indicator-values

display_name: indicator-values

iucn

display_name: iucn

life-history-traits

display_name: life-history-traits

liverworts

display_name: liverworts

mosses

display_name: mosses

red-list

display_name: red-list

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: precipitation par meteorology relative-humidity climate-change wind-speed meteo long-term swiss-forest-lab temperature

en: Site photo of the field station (NOF)

en: Site photo of the field station from the side.

mimetype: image/jpeg

en: Site photo of the forest station (NOB)

en: Site photo of the forest station from the side.

en: Data plot of the forest station (NOB)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

mimetype: application/pdf

en: Data plot of the field station (NOF)

en: Forest station data (NOB)

en: Data file.

en: Site aerial photo (Novaggio)

en: Site aerial photo from both Novaggio stations. Source: Google. 2016. Site aerial photo from both Novaggio stations. Retrieved November 15, 2016, from https://www.google.ch/maps

en: Field station data (NOF)

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Novaggio in Switzerland where one station is located within a natural deciduous forest stand (NOB) with Turkey oak (_Quercus cerris_; 70 yrs), sweet chestnut (_Castanea sativa_; 90 yrs) and silver birch (_Betula pendula_; 70 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, NOF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Novaggio is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

en: Novaggio, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1996 onwards


en: trichopria-drosophilae multilocus-genotypes switzerland population-genetics biological-control simple-sequence-repeats nuclear-microsatellite-markers drosophila-suzukii

en: Multilocus genotypes (biallelic coding for 21 nuclear microsatellites) of Trichopria drosophilae described in Gugerli et al. Agrarforschung Schweiz 2019. Missing data denoted as '999'. Population codes (PopNo) are the following: 1, Vezia; 3, Contone ; 5, Davesco; 6, Corteglia; 7, Mezzana; 8, Stabio; 9, Gordola; 10, Sementina; 12, Brusata di Novazzano; 14, Monteggio; 16, Giubiasco; 17, ComoBP; 18, VD; 19, Weil_D; 20, Dossenheim; 21, BioPlanet_Como. Coordinates (CoordCH_E, CoordCH_N) refer to the Swiss coordinates system CH1903.

en: Table comprising all pertinent information for multiplex PCRs of species-specific nuclear microsatellite makers for Trichopria drosophilae, comprising all 21 newly developed markers, details on full sequences with GenBank accession numbers, primer sequences (including labeling and pig-tails), and repeat motives. PCRs with respective annealing temperatures (AnnealingTemp) refer to Type-It Multiplex PCR Kit (Qiagen, Hilden, Germany).

en:
 Nuclear microsatellite markers and genotype data for _Trichopria ddrosophilae_

This data set comprises (i) the characteristics of a set of 21 species-specific nuclear microsatellites for PCR amplification in _Trichopria drosophilae_ (ii) and genotype data for samples collected in southern Switzerland (Canton of Ticino), with few reference samples from Canton of Vaud, southern Germany, and northern Italy (lab-reared population).
Markers were developed by Ecogenics GmbH, Balgach (Switzerland), using MiSeq Nano 2x250 v2 format (on a mix of 10 individuals). Multiplex PCR assays for multilocus genotyping were established by Ecological Genetics (WSL Birmensdorf), and population genetic analyses are found in Gugerli et al., Agrarforschung Schweiz 2019.

biological-control

display_name: biological-control

drosophila-suzukii

display_name: drosophila-suzukii

multilocus-genotypes

display_name: multilocus-genotypes

nuclear-microsatellite-markers

display_name: nuclear-microsatellite-markers

population-genetics

display_name: population-genetics

simple-sequence-repeats

display_name: simple-sequence-repeats

switzerland

display_name: switzerland

trichopria-drosophilae

display_name: trichopria-drosophilae

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: Nuclear microsatellite markers for Trichopria drosophilae, parasitoid wasp on Drosophila suzukii


maintainer: Esther R. Frei

en: seedling-recruitment treeline larix-decidua swiss-alps forest climate-change g-tree stillberg picea-abies

en: climate data G-TREE experiment, Davos, Switzerland

en:
 Background information
Climate change-induced range expansion of treeline populations depends on their successful recruitment, which requires dispersal of viable seeds followed by successful establishment of individual propagules. The Global Treeline Range Expansion Experiment (G-TREE) is a global initiative involving researchers from Europe, North America, Australia and New Zealand (Brown et al., 2013). At 15 alpine and Arctic treeline sites worldwide the mechanisms determining the elevational and latitudinal distribution of tree populations are studied using a standardized experimental approach. In summer 2013, a multifactorial seedling recruitment experiment has been established at the Stillberg ecological treeline research site. The aim of this experiment, is to quantify the effect of multiple abiotic and biotic drivers on emergence, survival, and growth of *Larix decidua* and *Picea abies* seedlings in replicated plots along an elevation gradient with three sites below (1930 m a.s.l.), at (2090 m a.s.l.), and above treeline (2410 m a.s.l.; Frei et al., 2018). All plots have been surveyed annually to count seedlings and to measure their total height. Additional environmental factors, such as soil temperature, have been recorded.

 Experimental design
The Stillberg research area is located in the Eastern Swiss Alps near Davos, Switzerland. The site has been used for several long-term monitoring as well as experimental studies for the last four decades. Our G-TREE experiment consists of a lowest site located in a subalpine Larch-Spruce forest (*Larici-Picetum*) dominated by *Larix decidua* and *Picea abies* (1930 m a.s.l.), a transition zone site dominated by alpine shrubs (2100 m a.s.l.), and an uppermost site in an alpine meadow with some dwarf shrubs (2390 m a.s.l.). The three experimental sites were set up following the standard protocol of the global G-TREE initiative (Brown et al., 2013). In a split-plot design, 20 plots (224 cm × 45 cm) were established at each site, which were randomly assigned to the 2 × 2 treatment combinations of the main factors seeding and scarification (i.e. seeding and scarification, seeding only, scarification only, and full control), resulting in five replications per main treatment combination. Each plot was divided into 16 split-plots (22.5 cm × 28 cm), to which treatment combinations of four additional two-level factors species (larch and spruce), provenance (low- and high-elevation), herbivore exclosure (with and without exclosure), and seeding year (2013, 2014) were randomly assigned, which resulted in a total of 960 split-plots (Details see Frei et al. 2018).

 Data description
All plots have been surveyed annually to count seedlings and to measure their total height. Seedling height was assessed with a hand ruler as the total length from the original emerging point to the apical meristem (Details see Frei et al. 2018). Additionally, soil temperature at each site, has been continuously recorded since 2013. Here, we present data from eight years (2013–2021).

climate-change

display_name: climate-change

forest

display_name: forest

g-tree

display_name: g-tree

larix-decidua

display_name: larix-decidua

picea-abies

display_name: picea-abies

seedling-recruitment

display_name: seedling-recruitment

stillberg

display_name: stillberg

swiss-alps

display_name: swiss-alps

treeline

display_name: treeline

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: G-TREE: Global Treeline Range Expansion Experiment Davos, Switzerland


en: spatial-factors functional-diversity beta-diversity water-filled-tree-holes environmental-factors community-assembly metacommunity taxonomic-diversity

en: This dataset provides the geographic coordinates (latitude and longitude) of each sampled water-filled tree hole (WTH) for the French forest plot.

en: This dataset provides the geographic coordinates (latitude and longitude) of each sampled water-filled tree hole (WTH) for the Brazilian forest plot.

en: This Excel file contains metadata that provides detailed information about all other files included here. It describes the ten accompanying datasets, outlining the type of data each contains, the variables used, their descriptions, and the units of measurement (where applicable).

en: This dataset contains trait information used to characterize the macroinvertebrates in our study, for the Indian forest plot. The dataset includes seven trait groups: aquatic developmental stage, maximum body size, locomotion, dispersal mode, respiration mode, feeding group, and cohort production interval. These trait groups are further divided into 32 distinct categories.

en: This dataset contains trait information used to characterize the macroinvertebrates in our study, for the Brazilian forest plot. The dataset includes seven trait groups: aquatic developmental stage, maximum body size, locomotion, dispersal mode, respiration mode, feeding group, and cohort production interval. These trait groups are further divided into 32 distinct categories.

en: This dataset contains values of taxonomic and functional β-diversity for each study site, along with their respective components: species richness difference vs. turnover (taxonomic), and functional richness difference vs. functional turnover (functional). Used to generate Fig. 1.

en: This dataset includes results from variation partitioning analysis used to assess the relative contributions of environmental and spatial factors to taxonomic and functional β-diversity and their components across biogeographic regions. It contains site-level values for pure and shared effects of predictors. Used to generate Fig_2.

en: This dataset includes physical and environmental characteristics of water-filled tree holes (WTHs), such as water depth, height, opening size, hole origin and orientation, circumference at breast height, WTH type, and water volume. It also contains physico-chemical parameters, nutrient concentrations (ammonium, nitrogen, phosphate, sulfate, chloride), CDOM, Chlorophyll-A, turbidity, and dry organic matter (FPOM, CPOM, total).

en: This dataset describes the animal community composition sampled from 35 water-filled tree holes (WTHs) per site. It includes abundance and taxonomic identification (to morphospecies level) of aquatic macroinvertebrates and Chordata.

en: Code to do the analysis and figures of the paper.

format: OCTET

en: This dataset contains trait information used to characterize the macroinvertebrates in our study, for the French forest plot. The dataset includes seven trait groups: aquatic developmental stage, maximum body size, locomotion, dispersal mode, respiration mode, feeding group, and cohort production interval. These trait groups are further divided into 32 distinct categories.

en: This dataset provides the geographic coordinates (latitude and longitude) of each sampled water-filled tree hole (WTH) for the Indian forest plot.

en: These datasets and code support research on the community assemblage of aquatic macroinvertebrates in ephemeral microhabitats, specifically water-filled tree holes (WTH), in three biogeographically and climatically distinct old-growth forests: Temperate-Mediterranean (France), Neotropical (Brazil) and Palaeotropical (India). By integrating standardised biological sampling, detailed environmental measurements and spatial analysis, the dataset allows for an in-depth examination of how local habitat conditions and spatial configuration influence taxonomic and functional beta-diversity patterns. The data capture the variation in species composition and ecological traits in 35 WTH per forest site and are particularly important for understanding how environmental filtering and spatial processes shape beta-diversity in natural forest ecosystems.

beta-diversity

display_name: beta-diversity

community-assembly

display_name: community-assembly

environmental-factors

display_name: environmental-factors

functional-diversity

display_name: functional-diversity

metacommunity

display_name: metacommunity

spatial-factors

display_name: spatial-factors

taxonomic-diversity

display_name: taxonomic-diversity

water-filled-tree-holes

display_name: water-filled-tree-holes

en: Spatial factors shape taxonomic and functional beta-diversity in water-filled tree holes in different biogeographical regions


photogrammetric-drone-data-schurlialp

maintainer: Yves Bühler

title_for_slug: photogrammetric-drone-data-schurlialp

en: wingtra uav dsm photogrammetry orthophoto drone-data

en: Data Access

en:
- 10 cm DSM
- 10 cm HS
- 3 cm orthophoto
- original RGB images
- Agisoft Metashape Processing Report

All of the products are also available as a cloud optimized geotiff.

en: The data was collected on 16.04.2021 and on 28.05.2021 with a Wingtra Gen II and a Sony RX1 II RGB sensor to obtain snow depth and distribution data. Following the data collection, the data was processed with Agisoft Metashape. A 10cm DSM, a 10cm snow depth raster, a 3mm orthophoto and the original drone images are available for download.

drone-data

display_name: drone-data

dsm

display_name: dsm

orthophoto

display_name: orthophoto

photogrammetry

display_name: photogrammetry

uav

display_name: uav

wingtra

display_name: wingtra

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Photogrammetric Drone Data Schürlialp