en: modeling switzerland statistical-model land-use landscape-services land-use-change urbanization

en: Data for Assessing potential landscape service trade-offs driven by urbanization in Switzerland

en:
The provided folder structure follows the set up of the scripts.
Data is only provided when it has been fully produced by us, otherwise dummies are given.
For data that will be produced by one of the scripts, no dummies are given.
The folders may contain sub-folders, which would be filled if the scripts were all run

 00_Analysis_Data
Data produced throughout the process of the calibration and projection that is later needed for analysis

 01_Raw_Data
Primary data from external sources that were used to compile the rasters and numbers used during the calibration and projection of landscape transitions as well as service calculation

 02_Prepared_Data
Data that will be prepared for further use by scripts are put in here
Additionally it contains the parameter sheets for the transition predictors that we compiled

 03_Model_Data
 Model outputs
Folder were the projection models statistics will be saved
 Models
Folder into which the actual transition models will be saved
 Residuals
Folder into which data on models residuals will be saved for future use

 04_Projected_Data
The output of the projections will be saved into this folder

 05_Service_Data
Any service calculations will be saved in here

 06_Results_Analysis
Any Analysis plots and tables as well as intermediate data will be saved here in the respective sub-folder

en: Scripts for Assessing potential landscape service trade-offs driven by urbanization in Switzerland

en:
Scripts ordered by their main purpose within sequential folders in this ReadMe marked with

Within the folders the capital letters refer to the parallel or sequential use of the scripts; scripts here in ReadMe are marked with

 00_Function Scripts
 Functions.r
Script containing several functions for analyzing statistical models: cohen.kappa, meva.table, D2, max-Tss, plot-TSS

 Service_functions.R
Script containing functions for calculating all services and returning sums (and median for bd and rec) as well as rasters

 01_Data Preparation
 A_AS_raster_preparation.R
Preparation of the land use rasters for the years 1985, 1997, and 2009 based on the original Arealstatistik (AS/ASCH); Assigning our categories and assining new values to all "construction sites" for calibrating the models
For model projection starting point (2009) and for service calculations (all ASCH years) the "other" categories were assigned to the land use categories based on dominant neighbor, so that there were no empty cells
Creation of water & mountainous area raster that stayed stable throughout the projections
Creation of MFH raster (2009), to have as base for all new projection years, as this category never becames any other

 B_Factors_preparation.R
Preparation of the factor rasters that were used to calculate service values per cell (see Table 2): LWfactor, Transportation, Vol, Rivers, Lakes, slope, TWW, Hazard_risk

 B_Predictors_preparation.R
Preparation of the raster of the predictors used for calibrating (ASCH years) and projecting (stable) the transition models that do not depend on the land use categories: Temperature (ASCH years), solar radiation (stable), Public transportation access (stable), Elevation (stable), Workers density (ASCH years), Population change (ASCH transitions)

 B_Regions_preparation.R
Preparation of bioregions as raster to be used to mask asxxxx later to calculated services and land use area just for one region

 C_Pred_proj.R
Projecting the dynamic predictors into the future for projecting the land use transitions with the model: Linear extrapolations for workers densities and population; more detailed extrapolation of temperature (based on data for all stations that matched between the temp table we used for the calibration period and the projections from CS2M, and then making a spatial interpolation for all years based on the interpolation of temperature for all years per station)

 02_Model calibration
 A_Bioreg_pred_corr.R
Calculating correlation between the predictors for each bioregion and land use category, Output are those with too high correlation so that one predictor can be removed from transitions were both predictors occur

 A_trans_numbers_bioreg.R
Calculate transition numbers for each bioregion to decide which transitions to primarily consider

 B_Bioreg_ext_eval.R
Calculating TSS based on the external evaluation for the bioregion transitions that happened often enough to try to model them (calibration data: 85-97, evaluation data: 97-09)

 B_Bioreg_int_eval.R
Calculating TSS based on the internal evaluation for the bioregion transitions that happened often enough to try to model them (calibration data: 70%, evaluation data: 30%)

 C_Bioreg_TSS_analysis.R
Extracting TSS numbers from internal and external evaluation, calculating mean and median for each transition for each region for each evaluation method and saving as csv per region to be able to select only the transitions with high enough model performance

 D_Bioreg_Models_for_prediction.R
Calibration of the models that were then used to project land use transitions into the future; calibrated separately for each bioregion

 E_Residuals_trans_models.R
Calculation of Moran's I statistics to analyze the residuals of the land use transition models

 03_Projections
 A_Bioreg_Projections_run.R
Master script for: Extrapolaitng into the future with the regional models and then assembling for each time step to calculate new AS predictors; Several Outputs: txt file to test for NAs in Predictors, txt file with random seed number for sampling, txt file with times for calculation steps (check progress of script while running), csv sheet with projected transition frequencies, tif-rasters for every region and time step, pdf with raster plot for every region and time step

 04_Service calculation
 A_Bioreg_as_services.R
Calculate services per bioregion for years 1985, 1997, 2009

 A_Service_calculation_bioregions.R
Extracting service numbers(sums) per bioregions for all projection runs and storing them in a list of matrixes to be available for further plotting; can be run for swiss wide projections or regional ones

 05_Analysis
 A_Bioreg_ASCH_development.R
Extracting the occurrence of each category per region for all runs (first part), then for ASCH years, and then plotting them nicely; only works for regional projections

 A_Bioreg_Predictors_importanceD2.R
Calculating D2 for each transition and each considered predictor from bivariate models to get value of importance

 B_Bioreg_Pred_imp_analysis.R
Using calculated D2 to sort Predictors according to their importance for each transition

 A_Bioreg_Spatial_results_analysis.R
Plotting randomly sampled runs for ASCH and services to analyses their spatial development

 A_Bioreg_Transition_numbers_check_v1.R
Analyzing the frequency for all transitions for all regions and producing the point plots for each transition separately

 A_Bioreg_Transition_numbers_check_v2.R
Analyzing percentage and numbers of all transitions but plotting them per region and originating ASCH category

 B_Transition_Analysis.R
Further Analysis of transition numbers

 A_Service_analysis.R
Plotting of the service development for bioregions in several ways for analyzing

en:
Data and scripts of publication:

Madleina Gerecke, Oskar Hagen, Janine Bolliger, Anna M. Hersperger, Felix Kienast, Bronwyn Price, Loïc Pellissier (2019) Assessing potential landscape service trade-offs driven by urbanization in Switzerland. Palgrave communications.

Contains land use projections for Switzerland and scripts and data for these projections as well as the calculation of landscape services.

Data Folder:
Contains sub-folder with the data necessary for this study (provided were no copyright issues, otherwise placeholders with descriptions), and folders where produced data may be stored

Scripts Folder:
Contains scripts organized into subfolders depending on their purpose

Note: Some abbreviations within the scripts and data are derived from German words and not English.

land-use

display_name: land-use

land-use-change

display_name: land-use-change

landscape-services

display_name: landscape-services

modeling

display_name: modeling

statistical-model

display_name: statistical-model

switzerland

display_name: switzerland

urbanization

display_name: urbanization

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Land use projections and services for Switzerland


maintainer: EnviDat Support

en: leaf-senescence growth-reaction-to-drought-stress forests fagus-sylvatica european-summer-drought drought-2018

state: active

type: dataset

en: Drought and Beech: 1000 beeches data set

media_type: application/zip

en: The data set comprises data from the Drought and Beech 1000 beeches project. The actual data file with monitoring data of 963 beech trees in northern Switzerland over four years (Drought_and_Beech_1000beeches_Data_v1.0.csv), a metadata file with column descriptions (Drought_and_Beech_1000beeches_Legend_v1.0.csv), and a file defining the different survey periods (Drought_and_Beech_1000beeches_Survey_periods_v1.0.csv).

format: ZIP

en: This study investigated multi-year drought impacts on beech forests through a unique large-scale monitoring of 963 individual beech trees, which showed either premature leaf discoloration during the drought in summer 2018 or no visible damage. We conducted the study in two highly drought-affected regions in northern Switzerland and one less drought-affected region located further south. We quantified the development of crown dieback and tree mortality as well as secondary drought damage, i.e. the presence of bleeding cankers and bark beetle infestations, in these trees for three consecutive years. We also determined the impact of several potential climate- and stand-related (predisposing) factors on mortality and drought legacy processes.

european-summer-drought

display_name: european-summer-drought

fagus-sylvatica

display_name: fagus-sylvatica

forests

display_name: forests

growth-reaction-to-drought-stress

display_name: growth-reaction-to-drought-stress

leaf-senescence

display_name: leaf-senescence

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

en: EnviDat: the Environmental Data Portal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: Data on multi-year drought impacts on European beech in northern Switzerland


maintainer: Izabela Bujak-Ozga

en: catchment-data water-level channel catchment precipitation dynamics drainage-network drainage

media_type: application/pdf

en: Documentation for the Short-term Drainage Density Dynamics Dataset for the Haute-Mentue Catchment (dataset_of_flowing_drainage_network_lengths_water_levels_and_precipitation_for_the_haute-mentue_catchment.csv). This document provides a detailed description of the collected data, the locations where it was recorded, the data format, and the curation process applied.

format: PDF

media_type: text/csv

en: The dataset consists of time series of measured surface and groundwater levels, calculated flowing drainage network lengths, and nearby precipitation data for two sub-catchments of the Haute-Mentue catchment, Switzerland (Summer-Autumn 2022). The details of the dataset are described in the provided documentation (short-term_drainage_density_dynamics_dataset_documentation_for_the_haute-mentue_catchment.pdf)

format: CSV

en: The dataset contains time series of water levels, precipitation measured in the two sub-catchments of the Haute-Mentue catchment and its vicinity during summer and autumn 2022, as well as flowing drainage network lengths calculated for these areas using the CEASE method developed by the authors. Detailed description of the dataset is provided in the documentation.

catchment

display_name: catchment

catchment-data

display_name: catchment-data

channel

display_name: channel

drainage

display_name: drainage

drainage-network

display_name: drainage-network

dynamics

display_name: dynamics

precipitation

display_name: precipitation

water-level

display_name: water-level


en: snow-depth snow-cover boundary-layer-winds vertical-wind-motion saltation

en: Data Compilation

en: Compressed TXT files

en:
The data correspond to the experiments presented and discussed in a paper regarding the interaction between turbulent wind fluctuations and snow saltation mass-fluxes (Paterna, 2016). Each of the nine data files corresponds to a different experiment presented in the paper and conducted in the winter 2014/2015 in the WSL/SLF cold wind tunnel in Davos. For each file the five columns indicate the time from the beginning of the experiment, the streamwise (u’) and the vertical (w’) wind velocity fluctuations, the streamwise (qx) and the vertical (qz) snow mass-flux components. From these time-series the scales of the snow saltation and of the turbulent flow are obtained with respect to the eddy-cycles and snow saltation cycles. From spectral analysis of the time-series a decoupling of the snow saltation from the turbulence forcing reveals two regimes of interaction: a turbulence-dependent regime occurring with weak saltation, and a turbulence-independent regime with strong saltation. Further details can be found at the link below.

Publication http://onlinelibrary.wiley.com/doi/10.1002/2016GL068171/abstract

boundary-layer-winds

display_name: boundary-layer-winds

saltation

display_name: saltation

snow-cover

display_name: snow-cover

snow-depth

display_name: snow-depth

vertical-wind-motion

display_name: vertical-wind-motion

en: Wind tunnel measurement data of drifting snow and turbulent wind fluctuations


backward-trajectories

maintainer: Michael Sprenger

title_for_slug: backward-trajectories

en: complex-topopgraphy alps backward-trajectories cosmo lagrangian-analysis raclets atmospheric-dynamics

en: Backward Trajectories

en: The trajectories are started from surface up to 5000 m altitude, with an equidistant vertical spacing of 200 m, and calculated 120 h backward in time. As long as the trajectories stay in the COSMO1 domain (essentially the Alpine region), as run operationally at MeteoSwiss, the COSMO analysis wind fields are used. When the trajectories leave this domain, they are extended further backward in time based on ECMWF analysis data. The following fields are traced along the trajectories: longitude, latitude, geopotential height, pressure, specific humidity, temperature and surface topography. Furthermore, it is indicated for each trajectory time instance on which model data, COSMO or ECMWF, the trajectory time is based. Finally, the trajectories are started every hour in the specified time period, and positions and fields are available every 10 min. Each day is saved as a separate file. The last 8 digits of the file names indicate the starting date of the trajectories.

mimetype: application/zip

en: Backward trajectories were calculated from two positions: Davos Wolfgang (LON: 9.85361, LAT: 46.83551) and Weissfluhjoch (LON: 9.80646 LAT: 46.83304) for the time period February 2 until March 27 2019 using COSMO or ECMWF, respectively.

alps

display_name: alps

atmospheric-dynamics

display_name: atmospheric-dynamics

backward-trajectories

display_name: backward-trajectories

complex-topopgraphy

display_name: complex-topopgraphy

cosmo

display_name: cosmo

lagrangian-analysis

display_name: lagrangian-analysis

raclets

display_name: raclets

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Backward  Trajectories


maintainer: Camille Albouy

en: 12s atlantic-ocean mitochondrial-dna barcoding actinopterygii teleo-primers environmental-dna

en: This file contains the metadata associated with each 12 s mitochondrial sequence.

en:
Mitochondrial tree based on the 12s sequences obtained for altantic fish.
This data represent the maximum likelihood phylogenetic tree allowing to assess 1) the clustering of the different sequences generated in
this study and their closest sequences recovered through a MegaBLAST on GenBank, 2) the robustness of the clades and 3) the
phylogenetic dissimilarities through the branch length of the tree among the different sequences. This tree was built with IQtree2
using the best substitution model found by modelFinder. The robustness of the node was evaluated using 1000 ultra-fast bootstrap
(node information indicated on the right of the /) and SH-aLRT procedures (node information indicated on the left of the /), using a hillclimbing nearest neighbor interchange (NNI) search to reduce the risk of overestimating branch supports with ultra-fast Bootstrap
caused by too severe model violations.

en: This file contains the 12s mitochondrial sequences for the Atlantic fishes collected on a French scientific survey (Evhoe) for stock assessment.

format: SERVICE

en: This file contains the Teleo Barcode for the Atlantic fishes collected during a French scientific survey (Evhoe) for stock assessment.

en: This file contains the metadata associated with each scientific survey

en:
The global biodiversity crisis driven by anthropogenic pressures significantly threatens marine ecosystems functioning. The rate of climate change and the impacts of anthropogenic pressures outpacing the capabilities of our observation tools, stresses the need to develop new methods to assess these rapid modifications. Environmental DNA (eDNA; DNA traces released by organisms) metabarcoding has emerged as a non-invasive method that has been widely developed over the last decade. Thanks to a large spatio-temporal coverage, high detection of rare species and its time and cost effectiveness, eDNA metabarcoding represents a promising biomonitoring tool. However, capturing fish diversity using eDNA requires a high-quality genetic reference database, which we are currently still lacking. For the South European Atlantic shelf area, we estimated that only 41% of the fish species present were recorded in the available eDNA reference databases. Improving reference databases can notably rely on opportunistic sampling enabling the reporting of sequences for new species. Therefore, the data provided here consists of barcoding 95 species of ray-finned and cartilaginous fishes over the 12S mitochondrial DNA gene. We generated 168 12S barcodes from fishes that were sampled in the Bay of Biscay (Northeast Atlantic, France) between 2017 and 2019. We also provided the “Teleo” barcode associated with a specific 12S region for each individual. In addition to the sequences, we provided for each individual the taxonomy, the details associated with the barcode (Genbank accession number, chromatograms), a photograph, as well as 5 ecomorphological measures and 11 life-history traits. These traits document several functions such as dispersion, diet, habitat use, and position in the food web. Furthermore, we provided the metadata of each sampling site (date, station, sampling hour, gear, latitude, longitude, depth) and environmental variables measured in situ (conductivity, salinity, water temperature, water density, air temperature).
This data set is highly valuable to improve the Northeast Atlantic eDNA genetic database, thus helping to better understand the effects of environmental forcing in the Bay of Biscay, a transition zone housing mixed assemblages of boreal, temperate and subtropical fish species susceptible to display variability in functional traits to adapt to changing conditions.

actinopterygii

display_name: actinopterygii

atlantic-ocean

display_name: atlantic-ocean

barcoding

display_name: barcoding

environmental-dna

display_name: environmental-dna

mitochondrial-dna

display_name: mitochondrial-dna

teleo-primers

display_name: teleo-primers

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: ATLFISHREF A 12S mitochondrial reference dataset for metabarcoding Atlantic Fishes frequently caught during scientific surveys in the Bay of Biscay


bryophytes-of-europe-traits-bet-dataset

title_for_slug: bryophytes-of-europe-traits-bet-dataset

en: red-list iucn hornworts life-history-traits indicator-values liverworts bioclimatic-variables mosses

media_type: text/plain

en: Text file including the BET dataset.

format: TXT

en: PDF including the (trait) explanations.

en: Excel file including the BET dataset and (trait) explanations.

format: XLS

en: The Bryophytes of Europe Traits (BET) dataset includes values for 65 biological and ecological traits and 25 bioclimatic variables for all 1816 bryophytes included in the European Red List (Hodgetts et al. 2019). The traits are compiled from several regional trait datasets and manually complemented using Floras, species-specific literature and expert knowledge. The bioclimatic variables are calculated using the European range of each species. Details regarding the trait compilation and extraction of bioclimatic variables can be found in the corresponding data paper (Van Zuijlen et al. 2023).

bioclimatic-variables

display_name: bioclimatic-variables

hornworts

display_name: hornworts

indicator-values

display_name: indicator-values

iucn

display_name: iucn

life-history-traits

display_name: life-history-traits

liverworts

display_name: liverworts

mosses

display_name: mosses

red-list

display_name: red-list


en: zenodo lightning-location-system holdover smouldering forest-fire database

en: This database contains open, harmonized, and ready-to-use global data on holdover time. Holdover time is defined as the time between lightning-induced fire ignition and fire detection. The first version of the database is composed of three data files (censored data, non-censored data, ancillary data) and three metadata files (description of database variables, list of references, reproducible examples). These data were collected through a literature review of LIW studies and some datasets were assembled by authors of the original studies, covering more than 150,000 LIW from 13 countries in five continents and a time span of a century from 1921 to 2020. Censored data are the core of the database and consist of frequency data reporting the number or relative frequency of LIW per interval of holdover time. Ancillary data provide additional information on the methods and contexts in which the data were generated in the original studies. Potential contributors to the database are encouraged to contact the corresponding author in the readme file.

database

display_name: database

forest-fire

display_name: forest-fire

holdover

display_name: holdover

lightning-location-system

display_name: lightning-location-system

smouldering

display_name: smouldering

zenodo

display_name: zenodo

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Database on holdover time of lightning-ignited wildfires


en: geoinformation-system swiss-geodata qgis-plugin digital-planning seilaplan open-source wms-data cable-yarding digital-elevation-model

en: View video on youtube!

en: WMS-Layer als Hintergrundkarten laden

en:
In order to digitally plan a cable line using the QGIS plugin ‘Seilaplan’, maps with various background information are helpful. In this tutorial we show you how to obtain maps that are helpful for cable line planning, for example a national map of Switzerland at different scales, the NFI vegetation height model or the NFI forest mix rate. For this we explain what WMS datasets are and how to integrate them into QGIS. No download of large data is needed for this, only a good internet connection. Please note that the tutorial language is German!

Link for the integration of WMS data: https://wms.geo.admin.ch/

Link to the description on the Swisstopo website:
https://www.geo.admin.ch/en/geo-services/geo-services/portrayal-services-web-mapping/web-map-services-wms.html

Link to the Seilaplan website: https://seilaplan.wsl.ch

**************************

Für die Verwendung des QGIS Plugins Seilaplan zur digitalen Seillinienplanung sind verschiedene Hintergrundkarten hilfreich. In diesem Tutorialvideo zeigen wir, was WMS Daten sind und wie man diese in QGIS einbinden kann. Dafür müssen die Daten nicht heruntergeladen werden. Es braucht lediglich eine gute Internetverbindung. Für die Seillinienplanung hilfreiche Karten sind bspw. die Landeskarte der Schweiz in verschiedenen Massstäben, das Vegetationshöhenmodell LFI oder der Waldmischungsgrad LFI.

Link zur Einbindung der WMS Daten: https://wms.geo.admin.ch/

Link zur Beschreibung auf der Swisstopo Webseite: https://www.geo.admin.ch/de/geo-dienstleistungen/geodienste/darstellungsdienste-webmapping-webgis-anwendungen/web-map-services-wms.html

Link zur Seilaplan-Website: https://seilaplan.wsl.ch

cable-yarding

display_name: cable-yarding

digital-elevation-model

display_name: digital-elevation-model

digital-planning

display_name: digital-planning

geoinformation-system

display_name: geoinformation-system

open-source

display_name: open-source

qgis-plugin

display_name: qgis-plugin

seilaplan

display_name: seilaplan

swiss-geodata

display_name: swiss-geodata

wms-data

display_name: wms-data

en: Seilaplan Tutorial: Load WMS layers as background maps


maintainer: Mahdi Jafari

en: snow-density-profile numerical-simulation convection-in-snow openfoam vapor-transport

en: snowpackBuoyantPimpleFoam

en:
This zipped folder includes (1) the source code files, (2) an example case for simulation, and (3) an instruction how to compile and use the new solver.

Note that the most updated version of snowpackBuoyantPimpleFoam can be found in the WSL/SLF GitLab repository: https://gitlabext.wsl.ch/snow-models/snowpackbuoyantpimplefoam

en: snowpackBuoyantPimpleFoam is a two-phase solver implemented to model convection of water vapor with phase change in snowpacks. This new solver is based on the standard solver of buoyantPimpleFoam in the open-source fluid dynamics software, OpenFOAM 5.0 (www.openfoam.org).

convection-in-snow

display_name: convection-in-snow

numerical-simulation

display_name: numerical-simulation

openfoam

display_name: openfoam

snow-density-profile

display_name: snow-density-profile

vapor-transport

display_name: vapor-transport

educ

en: Education, culture and sport

en: snowpackBuoyantPimpleFoam: an OpenFOAM Eulerian–Eulerian two-phase solver for modelling convection of water vapor in snowpacks


maintainer: Giulia Mazzotti

en: snow-energy-balance snow-modelling snow-distribution forest-snow forest-structure

en: Coordinates data

en: Includes coordinate information of each surveyed point (7 x 276 = 1932 forest points, 2 open areas)

en: Meteo data to drive FSM2 model

en: Includes meteorological driving data used to run the forest snow model FSM2, processed and parsed in text files that match the format required by FSM2. Separate files are available for each field area (Laret, Drusatscha and Ischlag) and season (2012/13, 2013/14, 2014/15). Each file includes data for the period from October 1st to May 31st at hourly resolution.

en: Snow depth data forest sites

en: Contains all snow depth data acquired at all forest sites during winters 2012/13, 2013714 and 2014/15.

en: Canopy data

en: Includes all canopy structure metrics computed at all surveyed locations

en: Grid point nomenclature

en: The grid structure of each forest site and the respective nomenclature applied to label individual points within each grid are outlined here.  Each point marks the location of snow depth measurements and co-located canopy structure parameters.

en: Snow depth data open sites

en: Contains all snow detph data accquired at open sites nearby the forest stands during the same period.

en:
This dataset contains all snow, canopy and meteorological data presented and used in the publication: Mazzotti, G., Essery, R., Moeser, D. & Jonas T. (2020) 'Resolving spatial variability of forest snow using an energy-balance model with a 1-layer canopy'. Water Resources Research, https://doi.org/10.1029/2019WR026129.
This publication must be cited when using this dataset.

forest-snow

display_name: forest-snow

forest-structure

display_name: forest-structure

snow-distribution

display_name: snow-distribution

snow-energy-balance

display_name: snow-energy-balance

snow-modelling

display_name: snow-modelling

envidat

en: EnviDat: the Environmental Data Portal

en: Snow depth, canopy structure and meterorological datasets from the Davos area, Switzerland, Winters 2012/13-2014/15, used for high-resolution forest snow modelling


maintainer: Yves Bühler

en: uav drone-data orthophoto dsm photogrammetry snow-depth-mapping wingtra

en: Data Access

en:
- DSM (10 cm resolution)
- Ortho (3 cm resolution)
- HS (10 cm resolution)
- original RGB drone images
- Agisoft Metashape Processing Report

All products are also available as a cloud optimized geotiff.

en: To map and assess snow depth on different dates, 9 flights were conducted in the winter season of 2020/21 at the Latschüelfurgga in Davos. The data was captured with a Sony RX1R II mounted on a Wingtra drone and was processed with the Agisoft Metashape software. High-resolution DSMs, orthomosaics and snow height rasters, as well as the original RGB images from each flight are available.

drone-data

display_name: drone-data

dsm

display_name: dsm

orthophoto

display_name: orthophoto

photogrammetry

display_name: photogrammetry

snow-depth-mapping

display_name: snow-depth-mapping

uav

display_name: uav

wingtra

display_name: wingtra

educ

en: Education, culture and sport

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Photogrammetric Drone Data Latschuelfurgga


maintainer: James W. Kirchner

en: sap-flow diurnal-cycle diel-cycle snowmelt evapotranspiration groundwater streamflow ecohydrology

en: Daily time series

en: Daily hydrometeorological and ecohydrological time series

mimetype: text/plain

en: MODIS NDSI script

en: Google Earth Engine script for computing MODIS normalized difference snow index (NDSI) values and averaging them over subcatchment areas.

en: Subcatchment polygons

en: Subcatchment polygons for use in the Google Earth Engine scripts.

en: 30-minute time series

en: 30-minute hydrometeorological and ecohydrological time series.

en: Metadata

en: Column descriptions for both data files, and map coordinates for all measurement locations.

mimetype: application/pdf

en: MODIS EVI2 script

en: Google Earth Engine script for computing MODIS two-band enhanced vegetation index (EVI2) values and averaging them over subcatchments.

en:
Hydrometerological and ecohydrological time series from Sagehen Creek and Independence Creek, Sierra Nevada, USA, illustrating hydrological responses to daily cycles in snowmelt and evapotranspiration forcing.

Data include 30-minute time series of

- weather variables,

- sap flow fluxes,

- groundwater levels (in two riparian transects of shallow groundwater wells),

- and stream stages (at 12 sites spanning a 500-meter elevation gradient),

and daily time series of

- temperature, precipitation, and snow water equivalent at three nearby snow telemetry stations

- diel cycle index values for groundwater levels and stream stages,

- and MODIS normalized difference snow index (NDSI) and enhanced vegetation index (EVI2) values averaged over selected subcatchments.

Google Earth Engine scripts for extracting the MODIS data are also provided.

diel-cycle

display_name: diel-cycle

diurnal-cycle

display_name: diurnal-cycle

ecohydrology

display_name: ecohydrology

evapotranspiration

display_name: evapotranspiration

groundwater

display_name: groundwater

sap-flow

display_name: sap-flow

snowmelt

display_name: snowmelt

streamflow

display_name: streamflow

en: Daily cycles in solar flux, snowmelt, transpiration, groundwater, and streamflow at Sagehen and Independence Creeks, Sierra Nevada, USA


en: snow-density snow-depth model-calibration-data model-validation-data snow-water-equivalent

en: swe2hs calibration and validation data

en:
 Contents of this archive

 README.md

 A readme file containing a description of the other files.

 automatic_stations_validation_data.csv

 Daily data from the automatic weather stations used for validation.

 Data sources and providers are listed in the SWE2HS paper, Table 1.

 Columns:

  * date: timestamp of the format YYYY-MM-DD
  * HS_[m]: snow depth in [m]
  * SWE_[m]: snow water equivalent in [m]
  * site_id: code for the measurement site
  - HS_interpolated: boolean flag for interpolated values
  - SWE_interpolated: : boolean flag for interpolated values

 coordinates_swe2hs_paper_stations.csv

 Coordinates of all measurement sites used in the SWE2HS paper.

 Columns:

  * site_id: code for the measurement site
  * location_name: location name of the measurement site
  * lon_[wgs84]: longitude in WGS84
  * lat_[wgs84]: latitude in WGS84
  * elevation_[m]: atitude of the measurement site in [m]
  * dataset: dataset in which the station is included

 manual_station_calibration_data.csv

 Calibration data from the Swiss manual observer stations. Long station records
 trmmed to 15 random water-years.

 Columns:

  * date: timestamp of the format YYYY-MM-DD
  * HS_[m]: snow depth in [m]
  * SWE_[m]: snow water equivalent in [m]
  * SWE_from_profile_[m]: biweekly measurement from the SWE in the measurement
   pit. Corrected with the bulk density in order to match the snow depth from
   the measurement stake. Please refer to the paper for further details.
  * site_id: code for the measurement site

 manual_stations_validation_data.csv

 Validation data from the Swiss manual observer stations. Remaining water-years
 from the long sttaion record not used for the calibration data.

 Columns:

  * date: timestamp of the format YYYY-MM-DD
  * HS_[m]: snow depth in [m]
  * SWE_[m]: snow water equivalent in [m]
  * SWE_from_profile_[m]: biweekly measurement from the SWE in the measurement
   pit. Corrected with the bulk density in order to match the snow depth from
   the measurement stake. Please refer to the paper for further details.
  * site_id: code for the measurement site

 manual_stations_used_deltasnow_parameters.csv

 Site specific DeltaSNOW model parameters used for the calculation of the daily
 SWE series in 'manual_stations_calibration_data.csv' and
 'manual_stations_validation_data.csv'.

 Parameters were optimized by reducing RMSE to the biweekly snow pit SWE measurements.
 Please refer to the paper for further details.

 A python implementation of the DeltaSNOW model was used for the calculation:
 pydeltasnow (https://pypi.org/project/pydeltasnow/)

 For a detailed description of the DeltaSNOW model parameters please see the
 respective publication:

 Winkler, M., Schellander, H., & Gruber, S. (2021). Snow water equivalents
 exclusively from snow depths and their temporal changes: the Δ snow model.
 Hydrology and Earth System Sciences, 25(3), 1165-1187.

 Columns:

  * site_id: code for the measurement site
  * rho_max: Maximum density of an individual snow layer produced by the DeltaSNOW model in [kg/m3]
  * rho_null: Fresh snow density for a newly created layer [kg/m3
  * c_ov: Overburden factor due to fresh snow [-]
  * k_ov: Defines the impact of the individual layer density on the compaction due to overburden [-]
  * k: Exponent of the exponential-law compaction [m3/kg]
  * tau: Uncertainty bound [m]
  * eta_null: Effective compactive viscosity of snow for “zero-density” [Pa s]

en:
The data in this repository was used for the calibration and validation of the
SWE2HS model in the following publication:
Aschauer, J., Michel, A., Jonas, T., & Marty, C. (2023). An empirical model to calculate snow depth from daily snow water equivalent: SWE2HS 1.0. Geoscientific Model Development Discussions, 1-19. https://doi.org/10.5194/gmd-2022-258
Contains daily snow water equivalent and snow depth timeseries from stations in the European Alps.

model-calibration-data

display_name: model-calibration-data

model-validation-data

display_name: model-validation-data

snow-density

display_name: snow-density

snow-depth

display_name: snow-depth

snow-water-equivalent

display_name: snow-water-equivalent

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: SWE2HS model calibration and validation data


maintainer: Frank Hagedorn

en: nutrient-fluxes forest-topsoil fertilization seasons phosphorus dissolved-organic-phosphorus soil-temperature beech nitrogen zero-tension-lysimeters

en:
Data on dissolved organic and inorganic phosphorus and nitrogen concentrations in leachates and their corresponding
fluxes from the litter layer, the Oe/Oa horizon, and the A horizon of two German beech forest sites.
Leachate samples were taken in April 2018, July 2018, October 2018, Feb./Mar. 2019, and July 2019
with zero-tension lysimeters after artificial irrigation. Soil samples were taken in July 2019.
For more details please refer to the publication.

beech

display_name: beech

dissolved-organic-phosphorus

display_name: dissolved-organic-phosphorus

fertilization

display_name: fertilization

forest-topsoil

display_name: forest-topsoil

nitrogen

display_name: nitrogen

nutrient-fluxes

display_name: nutrient-fluxes

phosphorus

display_name: phosphorus

seasons

display_name: seasons

soil-temperature

display_name: soil-temperature

zero-tension-lysimeters

display_name: zero-tension-lysimeters

en: Phosphorus and nitrogen leaching from beech forest soils


maintainer: Axel Volkwein

en: experiments field-data field-test rockfall field-tests mass-movements trajectory experiment natural-hazards

en: Jumps and impacts

en: This table contains data of more than 2200 of each jumps and impacts of the test blocks on a grassy slope. It gives there durations in combination with acting accerlartions and the rotational speed of the blocks. The data were retrieved using the block internal accelerometer and rotation sensors. The combination of these data with the measurement from the local positioning system allows the deduction of jump lengths, slope gradient etc.

en: Overview of all tests

en:
This table gives an overview on all tests performed including
- block used
- start & end position
- number of jumps
- etc.
-

en: These data contain the point clouds obtained from laser scanning the test slope and the six test blocks used for the experiments. The coordinates of the slope are given in CH-1903 format. The coordinates of the block point clouds are kept in a lokal x/y/z coordinate system.

en: Block trajectories recorded from local positioning system

en: This file contains more than 80 rockfall trajectories projected onto the terrain, i.e. the positions of the single blocks over time during the single tests that were recorded by the local positioning system with about 10Hz. It contains the detected positions as well as a smoothened path (see Volkwein et al., Geosciences, 2018). The table also contains the derived velocities and accelerations along the slope (attention: these accelerations are the once that occur during an impact).

en:
In summer 2014, 6 rock blocks between 20 and 80kg have been thrown in total 111 times down a slope at the Swiss Oberalppass close to the village Tschamut. The slope was mainly covered by grass and its lower part was flat and large enough to provide natural runouts of the single trajectories.

An extensive measurement program has been set up to measure the block trajectories: With surveyor's instruments the slope and the six used rock blocks were scanned and the start and end positions of each test were recorded. During the single events two cameras filmed the trajectories. A special sensor device located within the blocks recorded the acting accelerations and rotational speeds over time. Further, the device emitted a Wifi signal that got detected from eight receivers around the slope. Based on this signal the block position has been recorded over time.

The dataset contains all data that were gathered through above field campaign.

experiment

display_name: experiment

experiments

display_name: experiments

field-data

display_name: field-data

field-test

display_name: field-test

field-tests

display_name: field-tests

mass-movements

display_name: mass-movements

natural-hazards

display_name: natural-hazards

rockfall

display_name: rockfall

trajectory

display_name: trajectory

en: Repetitive trajectory testing in Tschamut 2014


en: catchment solutes oxygen-isotopes groundwater hydrogen-isotopes catchment-data stream-water

en: This document provides a detailed description of the hydrochemical dataset, including, among other things, an overview of the dataset content, an explanation of the column headers, a description of the locations where samples were collected, and an explanation of the abbreviations used in the dataset.

en: This dataset includes mean concentrations of solutes (Calcium, Iron, Magnesium, Sodium, Potassium, Boron, Nitrate, Sulfate, and Chloride) and stable isotope values (hydrogen and oxygen) in water molecules. These were measured in precipitation, groundwater, soil water, and surface water samples collected from the Haute-Mentue catchment in Switzerland during Spring and Fall 2022. Detailed information is available in the accompanying documentation (documentation_for_the_hydrochemical_data_collected_during_spring_fall_2022_in_the_haute-mentue_catchment.pdf).

en: The dataset contains hydrochemical data collected from spring to fall 2022 in the Haute-Mentue catchment, Switzerland. This hydrochemical data includes solute concentrations and stable isotopes of oxygen and hydrogen in water molecules, measured in streamwater, soil water, groundwater, and rainfall samples. Samples were collected during eight rainfall events with higher temporal resolution (hourly) as well as at lower resolution between events. A detailed description of the dataset is provided in the documentation.

catchment

display_name: catchment

catchment-data

display_name: catchment-data

groundwater

display_name: groundwater

hydrogen-isotopes

display_name: hydrogen-isotopes

oxygen-isotopes

display_name: oxygen-isotopes

solutes

display_name: solutes

stream-water

display_name: stream-water

educ

en: Education, culture and sport

en: Hydrochemical Data Collected during Spring-Fall 2022 in the Haute-Mentue Catchment


disdrometer-data-davos-wolfgang

title_for_slug: disdrometer-data-davos-wolfgang

en: precipitation davos disdrometer fall-velocity raclets

en: Disdrometer Data Davos Wolfgang

en:
The zip folder contains one netCDF file per day for Davos Wolfgang from February 8 to March 19 2019 with a temporal resolution of 30 seconds (time in UTC) and includes:

- characteristics of hydrometeors (e.g. diameter, fall velocity, amount per diameter class,...)
- precipitation rate
- radar reflectivity
- visibility range
- weather codes
- instrument performance

en: The dataset contains information on precipitation amount and type for Davos Wolfgang (LON: 9.853594, LAT: 46.835577) from February 8 to March 19 2019. It includes: characteristics of hydrometeors (e.g. diameter, fall velocity, amount per diameter class,...), precipitation rate, radar reflectivity, visibility range, weather codes and instrument performance.

davos

display_name: davos

disdrometer

display_name: disdrometer

fall-velocity

display_name: fall-velocity

precipitation

display_name: precipitation

raclets

display_name: raclets

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


en: chemistry snow-atmosphere-interactions laboratory-study atmosphere ice

en: Near Ambient Pressure partial Auger-Meitner electron yield X-ray absorption spectra and photon flux data. X-ray energy in eV in column 1, analyzer electron count intensity in arb. units in column 2.

en: Processed data as shown in Figure 4 of publication. X-ray energy in eV in column one, electron count intensity in arb. units in column 2.

en:
The table lists all NEXAFS raw data with the following columns:

* name:						raw file name
* xRayEkinRange_eV: 		Smallest and largest X-ray photon energy in eV
* scientaPassEnergy_eV: 	Pass energy of electron analyzer in eV
* scientaDwellTime_ms: 		Dwell time of electron analyzer in ms
* regionName:				O K-edge for all data
* scientaAcquisitionMode: 	Fixed energy (snapshot) mode
* scientaEkinRange_eV: 		Smallest and largest energy of the kinetic energy window used for detection in this work
* scientaEkinStep_eV		Not defined in fixed energy mode
* scientaLensMode:			Tune table
* scientaRegionIterations: 	Iterations (sweeps)
* scientaSequenceIterations: Iterations (sweeps)
* sampleTemp_dC: 			Temperature as monitored at the sample holder in °C
* cellPressure_mbar: 		Total pressure in measurement cell in mbar
* iceTemp_dC: 				Temperature of ice sample calculated based on vapour pressure (assuming total pressure equals partial pressure of water) in °C
* smplX_mm: 				positon of measurement spot, x dimension in mm
* smplY_mm: 				positon of measurement spot, y dimension in mm
* smplZ_mm: 				positon of measurement spot, z dimension in mm
* sealingTemp:				temperature at base of sample manipulator
* lastModifiedDatestr: 		time and date when data aquisition was finished
* sample: 					sample description

en: Data are compiled that have been used to demonstrate the impact of high water partial pressure on X-ray absorption spectra of ice.

atmosphere

display_name: atmosphere

chemistry

display_name: chemistry

ice

display_name: ice

laboratory-study

display_name: laboratory-study

snow-atmosphere-interactions

display_name: snow-atmosphere-interactions

en: An ice oxygen K-edge NEXAFS spectroscopy data set on gas-phase processing


maintainer: Virginie Marques

en: edna marseille marine fish-composition mediterraneaen teleo

en: Data access

en: Please use cyberduck to download for the moment

en:
Description: Fish environmental DNA data set collected in 2022 in the Calanques National Park
The eDNA samples were collected in 2022 in two locations (Moyades, M−FPA and “Impérial du large”, I-LPA), during the winter (January- February), the summer (June to August)and fall (mid-September to November) seasons, with the sampling dates depending on the weather conditions. For the M−FPA, samples were collected between Moyades island and Riou island, while for the I-LPA, they were collected on the south side of the “Impérial du large” island. To account for the existing bathymetry, in the M−FPA the samples were taken at two sampling sites with depths of 20 and 40 m, while in the I-LPA they were taken at two sites with depths of 20 and 80 m.
At each site, in-situ filtration of seawater was performed using a double-head submersible pump (Subspace, Geneva, Switzerland; nominal flow of ca. 1 L/min) strapped to an underwater scooter with 2 VigiDNA 0.20 µm filtration capsules (SPYGEN, le Bourget du Lac, France), along with disposable sterile tubing. The samples were collected along two horizontal transects (up to 400 m in length) during each closed-circuit rebreather dive, enabling the filtration of a water volume of 15 L/filter per depth, as close as possible to the substrate. Two filter replicates were collected by two divers at each sampling site, except in two cases where bad weather conditions or logistical issues meant that only one replicate was sampled.
After the filtration, the remaining seawater was emptied from the capsule back on the boat and replaced by a 80 mL CL1 conservation buffer (SPYGEN, le Bourget du Lac, France). To prevent any contamination, a strict protocol was followed during the entire process, requiring disposable gloves and single-use filtration equipment. Finally, the samples were stored at room temperature. We followed a strict contamination control protocol in both field and laboratory stages. Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

edna

display_name: edna

fish-composition

display_name: fish-composition

marine

display_name: marine

marseille

display_name: marseille

mediterraneaen

display_name: mediterraneaen

teleo

display_name: teleo

en: Environmental DNA Marine France Calanques 2022


maintainer: Roman Zweifel

en: icos forest-monitoring forest-dynamics ecosystem-functioning carbon-storage biomass forest eddy-covariance-measurements picea-abies seehornwald stem-growth forest-characteristics forest-ecosystems automated-monitoring twd eddy-covariance dendrometer tree-stem climate-change forest-function forest-canopy sap-flow open-data subalpine carbon-dioxide forest-area metadata ecophysiology co2 climate-growth treenet flux icp-forests water-relations dbh davos forest-biomass ilter lwf atmospheric-conditions carbon-cycle carbon-sequestration

en: Collection of files with information about the research site Seehornwald Davos CH-DAV

en: Readme

en: Site description of the Seehornwald Davos (CH-DAV) research site. The material provided offers information on the biomass and growth of trees in CH-DAV, including supporting materials such as maps, geolocations and analyses. CH-DAV is part of networks such as ICOS, LWF, TreeNet, ICPForests and is dedicated to forest monitoring and research.

atmospheric-conditions

display_name: atmospheric-conditions

automated-monitoring

display_name: automated-monitoring

biomass

display_name: biomass

carbon-cycle

display_name: carbon-cycle

carbon-dioxide

display_name: carbon-dioxide

carbon-sequestration

display_name: carbon-sequestration

carbon-storage

display_name: carbon-storage

climate-change

display_name: climate-change

climate-growth

display_name: climate-growth

dbh

display_name: dbh

dendrometer

display_name: dendrometer

ecophysiology

display_name: ecophysiology

ecosystem-functioning

display_name: ecosystem-functioning

eddy-covariance

display_name: eddy-covariance

eddy-covariance-measurements

display_name: eddy-covariance-measurements

flux

display_name: flux

forest

display_name: forest

forest-area

display_name: forest-area

forest-biomass

display_name: forest-biomass

forest-canopy

display_name: forest-canopy

forest-characteristics

display_name: forest-characteristics

forest-dynamics

display_name: forest-dynamics

forest-ecosystems

display_name: forest-ecosystems

forest-function

display_name: forest-function

forest-monitoring

display_name: forest-monitoring

icos

display_name: icos

icp-forests

display_name: icp-forests

ilter

display_name: ilter

lwf

display_name: lwf

metadata

display_name: metadata

open-data

display_name: open-data

picea-abies

display_name: picea-abies

sap-flow

display_name: sap-flow

seehornwald

display_name: seehornwald

stem-growth

display_name: stem-growth

subalpine

display_name: subalpine

tree-stem

display_name: tree-stem

treenet

display_name: treenet

twd

display_name: twd

water-relations

display_name: water-relations

educ

en: Education, culture and sport

en: Site description Davos Seehornwald CH-DAV


en: emma mixing-models stable-isotopes end-member-mixing-analysis tracers eemma

en: eemma vignette script

en: An R script for the vignettes (simple data analysis demonstrations) shown in the user's guide

format: OCTET

mimetype: application/octet-stream

en: eemma user's guide

en: A brief user's guide to EEMMA, with illustrations using a simple data set

en: vignette data

en: A simple data set for the vignette script

en: An R script that performs ensemble end-member mixing analysis

en:
The R script eemma.R, which implements Ensemble End-Member Mixing Analysis (EEMMA) to estimate source fractions in mixtures, exploiting information contained in time-series correlations among tracer time series.

A brief user's guide, a demonstration script, and a demonstration data set are also provided, to accompany Kirchner, J.W., Mixing models with multiple, overlapping, or incomplete end-members, quantified using time series of a single tracer, Geophysical Research Letters, 2023.

The user's guide is available for public use under Creative Commons CC-BY-SA. Public use of the scripts is permitted under GNU General Public License 3 (GPL3); for details see https://www.gnu.org/licenses/

eemma

display_name: eemma

emma

display_name: emma

end-member-mixing-analysis

display_name: end-member-mixing-analysis

mixing-models

display_name: mixing-models

stable-isotopes

display_name: stable-isotopes

tracers

display_name: tracers

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: eemma.R, an R script for Ensemble End-Member Mixing Analysis


maintainer: Gesa von Hirschheydt

en: sessile-species swisslichens bayesian-inference occupancy-model biodiversity detection-probability cryptogams monitoring detectability inter-observer-difference lichens observer-error

en: Repository containing the full data, code, README and workflow files.

en:
The available lichen data consists of detection/nondetection data (1/0) of 373 tree-inhabiting (*corticolous*) lichen species from 416 plots surveyed 1-2 times. The lichen data were originally collected for the purpose of the Red List of epiphytic lichen species in Switzerland ([Scheidegger *et al.* 2002](https://www.bafu.admin.ch/bafu/de/home/themen/biodiversitaet/publikationen-studien/publikationen/rote-liste-gefaehrdete-arten-baum-erdbewohnende-flechten.html)), but updated to recent nomenclature for the purpose of this study.
This repository contains all the supporting data and R code for the paper:
von Hirschheydt, G., Kéry, M., Ekman, S., Stofer, S., Dietrich, M., Keller, C., Scheidegger, C. (2024) **Occupancy model reveals limited detectability of lichens in a standardised large-scale monitoring**. *Journal of Vegetation Science*.
Results and figures presented in the manuscript should be reproducible (with small differences in the latter digits due to stochasticity of the MCMC sampler) with the provided data and code.
The downloadable `.zip` folder has the following structure:
* `0_data/`
* `1_code/`
* `2_output/`
* `lichen_detectability.Rproj`
* `README.txt`
* `workflow.html`
- `workflow.Rmd`

The main folder and the three subordinate folders each have their own `README*.txt` file. These describe each available file in detail and should be consulted prior to using the data or running any code. The file `lichen_detectability.Rproj` stores the information about the R project. The user can open the project by clicking/double-clicking on this file which will automatically define the repository as working directory for the R session. If the user does not use RStudio/Posit, they may have to set the working directory manually to the stored location in the R files. The files `workflow.*` guide the user through the analysis (`1_code/*.R`) in the correct order so that they can:
- bundle the cleaned data into a data list readable for JAGS
- fit the multi-species occupancy model to the data and store the output
- assess the goodness-of-fit of the model to the data
- conduct a prior sensitivity analysis with 2 additional sets of priors
- extract the summary statistics reported in the manuscript and supplementary materials
- generate the figures shown in the manuscript and supplementary materials

bayesian-inference

display_name: bayesian-inference

biodiversity

display_name: biodiversity

cryptogams

display_name: cryptogams

detectability

display_name: detectability

detection-probability

display_name: detection-probability

inter-observer-difference

display_name: inter-observer-difference

lichens

display_name: lichens

monitoring

display_name: monitoring

observer-error

display_name: observer-error

occupancy-model

display_name: occupancy-model

sessile-species

display_name: sessile-species

swisslichens

display_name: swisslichens

en: Repeated detection-nondetection data of corticolous lichens from a standardised monitoring across Switzerland


data-set-on-snow-instability

title_for_slug: data-set-on-snow-instability

en: failure-initiation slab-tensile-support weak-layer propgatoin-saw-test crack-propagation avalanche-forcasting snow-avalanche snow-stability-evaluation rutschblock slab

en: Read-me file on snow instability data

en: data set on snow instability

mimetype: text/csv

en:
These data on snow instability include three data subsets that were analyzed and the results published by Reuter and Schweizer (2018) who suggest a novel framework on how to describe snow instability by failure initiation, crack propagation and slab tensile support.

Please refer to the Read-me file for further details on the data.

These data are the basis of the following publication:
Reuter, B. and Schweizer, J., 2018. Describing snow instability by failure initiation, crack propagation and slab tensile support. Geophys. Res. Lett., 45, doi: 10.1029/2018GL078069.

avalanche-forcasting

display_name: avalanche-forcasting

crack-propagation

display_name: crack-propagation

failure-initiation

display_name: failure-initiation

propgatoin-saw-test

display_name: propgatoin-saw-test

rutschblock

display_name: rutschblock

slab

display_name: slab

slab-tensile-support

display_name: slab-tensile-support

snow-avalanche

display_name: snow-avalanche

snow-stability-evaluation

display_name: snow-stability-evaluation

weak-layer

display_name: weak-layer

educ

en: Education, culture and sport

en: Data set on snow instability


weissfluhjoch-dataset-for-esm-snowmip

maintainer: Nander Wever

title_for_slug: weissfluhjoch-dataset-for-esm-snowmip

en: esm-snowmip weissfluhjoch snow-models snow snow-depth

en: Dataset Weissfluhjoch for ESM-SnowMIP

en: ini file

en: This ini file is required by data-converter from MeteoIO version 1887 (http://models.slf.ch/p/meteoio/)

en: Conversion script

en:
Use this script to convert WFJ_optimaldataset_v6.smet to wfj.smet, the file that is used for the ESM-SnowMIP project. It also requires the file: WFJ_AirPressure_Data.zip

Use: bash create_wfj_dataset.sh > input/wfj.smet

mimetype: text/x-sh

en: This Weissfluhjoch dataset is a processed version of the Weissfluhjoch dataset version 6 from https://doi.org/10.16904/6. This dataset was specially created for the ESM-SnowMIP project. Here it is documented how this dataset has been created.

esm-snowmip

display_name: esm-snowmip

snow

display_name: snow

snow-depth

display_name: snow-depth

snow-models

display_name: snow-models

weissfluhjoch

display_name: weissfluhjoch

en: Weissfluhjoch dataset for ESM-SnowMIP


maintainer: Yohann Chauvier

en: independent-dataset covariate-correction environmental-stratification background-data target-group random-stratified-sampling plant-species point-process-model survey-effort cluster

en: Non-copyright data, scripts, diversity outputs

en:
Aim: While species distribution models (SDMs) are standard tools to predict species distributions, they can suffer from observation and sampling biases, particularly presence-only SDMs that often rely on species observations from non-standardized sampling efforts. To address this issue, sampling background points with a target-group strategy is commonly used, although more robust strategies and refinements could be implemented. Here, we exploited a dataset of plant species from the European Alps to propose and demonstrate efficient ways to correct for observer and sampling bias in presence-only models.

Innovation: Recent methods correct for observer bias by using covariates related to accessibility in model calibrations (classic bias covariate correction, Classic-BCC). However, depending on how species are sampled, accessibility covariates may not sufficiently capture observer bias. Here, we introduced BCCs more directly related to sampling effort, as well as a novel corrective method based on stratified resampling of the observational dataset before model calibration (environmental bias correction, EBC). We compared, individually and jointly, the effect of EBC and different BCC strategies, when modelling the distributions of 1’900 plant species. We evaluated model performance with spatial block split-sampling and independent test data, and assessed the accuracy of plant diversity predictions across the European Alps.

Main conclusions: Implementing EBC with BCC showed best results for every evaluation method. Particularly, adding the observation density of a target group as bias covariate (Target-BCC) displayed most realistic modelled species distributions, with a clear positive correlation (r≃0.5) found between predicted and expert-based species richness. Although EBC must be carefully implemented in a species-specific manner, such limitations may be addressed via automated diagnostics included in a provided R function. Implementing EBC and bias covariate correction together may allow future studies to address efficiently observer bias in presence-only models, and overcome the standard need of an independent test dataset for model evaluation.

background-data

display_name: background-data

cluster

display_name: cluster

covariate-correction

display_name: covariate-correction

environmental-stratification

display_name: environmental-stratification

independent-dataset

display_name: independent-dataset

plant-species

display_name: plant-species

point-process-model

display_name: point-process-model

random-stratified-sampling

display_name: random-stratified-sampling

survey-effort

display_name: survey-effort

target-group

display_name: target-group

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Novel methods to correct for observer and sampling bias in presence-only species distribution models


maintainer: Frank Techel

en: avalanche-statistics long-term-trends avalanche-fatalities avalanche-accident-statistics avalanche-accident

en: Data avalanche fatalities 1969/1970 - 2014/2015

en: The data comprises avalanche fatality data from the Alpine regions in the seven countries Austria, France, Germany, Italy, Liechtenstein, Slovenia, and Switzerland.

en:
During the last 45 years, about 100 people lost their lives in avalanches in the European Alps each year. Avalanche fatalities in settlements and on transportation corridors have considerably decreased since the 1970s. In contrast, the number of avalanche fatalities during recreational activities away from avalanche-secured terrain doubled between the 1960s and 1980s and has remained relatively stable since, despite a continuing strong increase in winter backcountry recreational activities.

Data complementing Figure 2 in:
_"Avalanche fatalities in the European Alps: long-term trends and statistics"_, by Techel, F., Jarry, F., Kronthaler, G., Mitterer, S., Nairz, P., Pavšek, M., Valt, M., and Darms, G.

Data description:
please refer to section 2 (Data and Methods) in the mentioned publication

avalanche-accident

display_name: avalanche-accident

avalanche-accident-statistics

display_name: avalanche-accident-statistics

avalanche-fatalities

display_name: avalanche-fatalities

avalanche-statistics

display_name: avalanche-statistics

long-term-trends

display_name: long-term-trends

en: Avalanche fatalities in the European Alps (1969/1970 - 2014/2015)


en: avalanche climate-change hazard avalanche-mapping new-snow ramms

en:
To assess the possible consequences of potential changes in snow accumulation and temperature and their impact on avalanche hazard, we introduce a comprehensive multi-step framework. It includes the analysis of climate change scenarios as well as the modeling of future snow covers and the simulation of avalanches in a case study region in central Switzerland.
Using a downscaling and a quantile mapping approach, we considered the high emission RCP8.5 from the CH2018 Swiss climate change scenarios and simulated a potential snow cover of more than 100 future winters with the snow cover model SNOWPACK. Changing snow accumulation and snow cover temperature was taken into account for two future time frames. The changed parameters were used in the RAMMS::EXTENDED avalanche simulation software on large scale.

avalanche

display_name: avalanche

avalanche-mapping

display_name: avalanche-mapping

climate-change

display_name: climate-change

hazard

display_name: hazard

new-snow

display_name: new-snow

ramms

display_name: ramms

educ

en: Education, culture and sport

en: A novel approach for bridging the gap between climate change scenarios and avalanche hazard indication mapping


en: plfa forest c13-labeling microbial-biomass biogeochemical-cycling drought

en: Gao_Frank_C13 pulse labeling.xlsx

en:
Data of manuscript by Gao t al. : Drought resistance and resilience of rhizosphere communities in forest soils from the cellular to ecosystem scale – insights from 13C pulse labeling
Inludes data on 13C pulse-labeling experiment in young beech model ecosystems and a mature pine forest. Data of soil climate, total PLFA, 13C label strength in PLFA of pulse-labeling carried out under drought and after rewetting

en: Data of 13C-pulselabeling experiments in a young beech model ecosystem and a mature pine forest exposed to drought and rewetting. Data include microclimate during the experiment, total PLFA contents, d13C signatures in PLFA , microbial biomass, soil-respired CO2 measure during 30 days following 3-4 hour long pulse labeling with highly 13C-enriched CO2.

biogeochemical-cycling

display_name: biogeochemical-cycling

drought

display_name: drought

forest

display_name: forest

microbial-biomass

display_name: microbial-biomass

plfa

display_name: plfa

en: Gao_Drought resistance and resilience of rhizosphere communities_13C-PLFA


en: disturbance functional-taxonomic-groups lichen-growthform climate-change lichen photobiont bryophyte madeira-island lichen-growth-form functional-taxonomic-group liverwort endemic-species biodiversity elevational-gradient bryophyte-life-strategy climate-change-impact moss endemic

en: MadCrypto – Bryophyte and macrolichen diversity in laurel forests of Madeira

en:
This dataset includes species lists of bryophytes and macrolichens (presence/absence) sampled on the forest floor and on trees in disturbed and undisturbed plots along elevation gradients in the laurel forests of Madeira island. It also contains species specific information (bryophytes: red list status, endemic status, taxonomic group, life strategy; macrolichens: photobiont type, growth form) as well as plot information (Plot_ID, sampling date, coordinates, elevation a.s.l. (m), disturbance type, sampled host tree species).

The dataset was used for the paper
Boch S, Martins A, Ruas S, Fontinha S, Carvalho P, Reis F, Bergamini A, Sim-Sim M (2019) Bryophyte and macrolichen diversity show contrasting elevation relationships and are negatively affected by disturbances in laurel forests of Madeira island. Journal of Vegetation Science.

en:
This dataset includes species lists of bryophytes and macrolichens (presence/absence) sampled on the forest floor and on trees in disturbed and undisturbed plots along elevation gradients in the laurel forests of Madeira island. It also contains species specific information (bryophytes: red list status, endemic status, taxonomic group, life strategy; macrolichens: photobiont type, growth form) as well as plot information (Plot_ID, sampling date, coordinates, elevation a.s.l. (m), disturbance type, sampled host tree species).

The dataset was used for the paper
Boch S, Martins A, Ruas S, Fontinha S, Carvalho P, Reis F, Bergamini A, Sim-Sim M (2019) Bryophyte and macrolichen diversity show contrasting elevation relationships and are negatively affected by disturbances in laurel forests of Madeira island. Journal of Vegetation Science 30: 1122–1133.

The excel file contains 5 sheets:
1) Plot information
2) Bryophyte data with species specific information, separated per substrate
3) Macrolichen data with species specific information, separated per substrate
4) Bryophyte data with species specific information (plot level data). Species lists of the two substrates were merged; if one substrate in a plot hosted a species identified only to genus level (genus spec.) but the second investigated substrate hosted an identified species of the same genus, we removed the genus spec. entry in the particular plot. The species list of sheet 2 and 4 might therefore differ slightly.
5) Macrolichen data with species specific information (plot level data). Species lists of the two substrates were merged; if one substrate in a plot hosted a species identified only to genus level (genus spec.) but the second investigated substrate hosted an identified species of the same genus, we removed the genus spec. entry in the particular plot. The species list of sheet 3 and 5 might therefore differ slightly.

biodiversity

display_name: biodiversity

bryophyte

display_name: bryophyte

bryophyte-life-strategy

display_name: bryophyte-life-strategy

climate-change-impact

display_name: climate-change-impact

disturbance

display_name: disturbance

elevational-gradient

display_name: elevational-gradient

endemic

display_name: endemic

endemic-species

display_name: endemic-species

functional-taxonomic-group

display_name: functional-taxonomic-group

functional-taxonomic-groups

display_name: functional-taxonomic-groups

lichen

display_name: lichen

lichen-growth-form

display_name: lichen-growth-form

lichen-growthform

display_name: lichen-growthform

liverwort

display_name: liverwort

madeira-island

display_name: madeira-island

moss

display_name: moss

photobiont

display_name: photobiont

envidat

en: EnviDat: the Environmental Data Portal


en: orographic-precipitation complex-terrain snow-precipitation precipitation-variability cosmo-wrf

en: StationData

en: Snow depth maps over Dischma valley for 26 January 2016 and 9 March 2016 and snow depth differences between the two dates.

en:
The data presented here corresponds to the publication "Spatial variability in snow precipitation and accumulation in COSMO-WRF simulations and radar estimations over complex terrain" (Gerber et al., 2018a), which investigates the precipitation variability of snow precipitation in the central northern part of the Grisons (CH) and the publication "The importance of near-surface winter precipitation processes in complex alpine terrain" (Gerber et al., 2018b). The dataset contains:

* WRFsimulations: WRF simulation output for simulations with 4x (14x) terrain smoothing with an output timestep of 30 min/5 min and horizontal grid spacings of 1350 m, 450 m, 150 m and 50 m (currently: data available upon request).
* StationData: Meteorological station data of 18 meteorological stations in the central northern part of the Grisons with 30 minute resolution for the period 1 January 2016 till 1 May 2016.
* ADS80data: Photogrammetrically determined snow depth distribution data over the Dischma valley for the 26 January 2016 and 9 March 2016. Snow heights are corrected for buildings, vegetation (> 1m), outliers, and pixles, which are obivously snow-free on the pictures (Bühler et al., 2015). In addition the snow depth differences (snow depth on 9 March 2016 minus snow depth on 26 January 2016) are provided.

For more details about the simulation and observation data, see Gerber et al., 2018 and Gerber and Sharma (2018).

Publications:

Bühler, Y., Marty, M., Egli, L., Veitinger, J., Jonas, T., Thee, P., and Ginzler, C.: Snow depth mapping in high-alpine catchments using digital photogrammetry. Cryosphere, 9, 229–243, doi:10.5194/tc-9-229-2015, 2015.

Gerber, F., Besic, N., Sharma, V., Mott, R., Daniels, M., Gabella, M., Berne, A., Germann, U., and Lehning, M.: Spatial variability in snow precipitation and accumulation in COSMO-WRF simulations and radar estimations over complex terrain, The Cryosphere, 12, 3137–3160, doi:10.5194/tc-12-3137-2018, 2018.

Gerber, F., Mott, R. and Lehning, M.: The importance of near-surface winter precipitation processes in complex alpine terrain, Journal of Hydrometeorology, accepted, 2018.

Gerber, F., and Sharma, V.: Running COSMO-WRF on very-high resolution over complex terrain. Laboratory of Cryospheric Sciences CRYOS, École Polytechnique Fédérale de Lausanne EPFL, Lausanne, Switzerland. doi:10.16904/envidat.35, 2018.

complex-terrain

display_name: complex-terrain

cosmo-wrf

display_name: cosmo-wrf

orographic-precipitation

display_name: orographic-precipitation

precipitation-variability

display_name: precipitation-variability

snow-precipitation

display_name: snow-precipitation

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: DISCHMEX - High-resolution WRF simulations in complex alpine terrain and station measurements


maintainer: Matthias Haeni

en: meteo swiss-forest-lab climate-change meteorology long-term temperature precipitation relative-humidity wind-speed par

en: Data plot of the field station (JUF)

en: Data overview for air temperature, relative humidity, precipitation, PAR, wind speed.

en: Data plot of the forest station (JUB)

en: Forest station data (JUB)

en: Data file.

en: Site photo of the forest station (JUB)

en: Site photo of the forest station from the side.

mimetype: image/jpeg

en: Site photo of the field station (JUF)

en: Site photo of the field station from the side.

en: Site aerial photo (Jussy)

en: Site aerial photo from both Jussy stations. Source: Google. 2016. Site aerial photo from both Jussy stations. Retrieved November 11, 2016, from https://www.google.ch/maps

en: High quality meteorological data are needed for long-term forest ecosystem research, particularly in the light of global change. The long-term data series published here comprises almost 20 years of measurements for two meteorological stations in Jussy in Switzerland where one station is located within a natural broad-leaved forest stand (JUB) with sessile oak (_Quercus petrea_; 90 yrs), aspen (_Populus tremula_; 60 yrs) and European hornbeam (_Carpinus betulus_; 60 yrs) as dominant tree species. A second station is situated in the very vicinity outside of the forest (field station, JUF). The meteorological time series are presented in hourly time resolution of air temperature, relative humidity, precipitation, photosynthetically active radiation (PAR) and wind speed. Jussy is part of the Long-term Forest Ecosystem Research Programme (LWF) established and maintained by the Swiss Federal Research Institute WSL.

climate-change

display_name: climate-change

long-term

display_name: long-term

meteo

display_name: meteo

meteorology

display_name: meteorology

par

display_name: par

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

swiss-forest-lab

display_name: swiss-forest-lab

temperature

display_name: temperature

wind-speed

display_name: wind-speed

educ

en: Education, culture and sport

en: Jussy, Switzerland: Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF), from 1997 onwards


photogrammetric-drone-data-gruenbodeli

maintainer: EnviDat Support

title_for_slug: photogrammetric-drone-data-gruenbodeli

en: drone-data wingtra dsm orthophoto uav snow-depth-mapping photogrammetry

en: Data Access

en:
- ortho (3 cm/25 mm resolution)
- DSM (10 cm resolution)
- HS (10 cm resolution)
- RGB images
- Agisoft Metashape Project Report

All products are also available as a cloud optimized geotiff.

en:
We conducted various drone flights at Grüenbödeli near Davos with the Sony RX1R II mounted on a Wingtra drone during 2020/21/22. The data was processed with the Agisoft Metashape Professional Software.
The following products are available for download:
- DSM 10cm resolution
- Orthomosaic 3cm/25mm resolution
- Snow Raster 10cm resolution
- original RGB images

drone-data

display_name: drone-data

dsm

display_name: dsm

orthophoto

display_name: orthophoto

photogrammetry

display_name: photogrammetry

snow-depth-mapping

display_name: snow-depth-mapping

uav

display_name: uav

wingtra

display_name: wingtra

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Photogrammetric Drone Data Grüenbödeli


en: total-number cloud-droplets nucleation pmcamx-uf modeling

en: data_JRL_New particle formation events can reduce cloud droplets in boundary layer clouds at the continental scale.Paper_2023GL106182.zip

en: This repository contains PMCMx-UF model outputs used for the paper: D. Patoulias K. Florou S. N. Pandis and A. Nenes: New particle formation events can reduce cloud droplets in boundary layer clouds at the continental scale, Geophysical Research Letters, in review, 2023.

cloud-droplets

display_name: cloud-droplets

modeling

display_name: modeling

nucleation

display_name: nucleation

pmcamx-uf

display_name: pmcamx-uf

total-number

display_name: total-number

en: Dataset for the publication New particle formation events can reduce cloud droplets in boundary layer clouds at the continental scale


en: plant-species uetliberg flora-change occurrence zurich

en:
The list gives the clearly identifiable plant species from Schinz (1775). Die Reise auf den Uetliberg. Verlag des Waysenhauses, Zürich). Several species given in Schinz (1775) are not identifiable to the species level and are not included in the list. Similarly, Vicia pisiformis, Erbsenartige Wicke, given by Schinz (1775) is probably a misidentification and also not included in the list.

Latin plant species name Schinz 1775: Latin plant name (if) given by Schinz (1775); na: not available
German plant species name Schinz 1775: German plant name given by Schinz (1775)
Latin plant species name Info Flora 2024: Latin plant name according to www.infoflora.ch in 2024
German plant species name Info Flora 2024: German plant name according to www.infoflora.ch in 2024
Plant species still occurring in 2020: Plant species given in Schinz (1775) still occurring at the Uetliberg in 2020 (Zürcherische Botanische Gesellschaft. 2020. Flora des Kanton Zürich. Haupt, Bern); occurrence of Thesium alpinum, Alpen-Bergflachs, according to floristic knowledge of Rolf Holderegger and Michèle Büttner; 1: still occurring; 0: no longer occurring / extinct.

en:
The list gives the clearly identifiable plant species from Schinz (1775). Die Reise auf den Uetliberg. Verlag des Waysenhauses, Zürich). Several species given in Schinz (1775) are not identifiable to the species level and are not included in the list. Similarly, *Vicia pisiformis*, Erbsenartige Wicke, given by Schinz (1775) is probably a misidentification and also not included in the list.
Latin plant species name Schinz 1775: Latin plant name (if) given by Schinz (1775); na: not available
German plant species name Schinz 1775: German plant name given by Schinz (1775)
Latin plant species name Info Flora 2024: Latin plant name according to www.infoflora.ch in 2024
German plant species name Info Flora 2024: German plant name according to www.infoflora.ch in 2024
Plant species still occurring in 2020: Plant species given in Schinz (1775) still occurring at the Uetliberg in 2020 (Zürcherische Botanische Gesellschaft. 2020. Flora des Kanton Zürich. Haupt, Bern); occurrence of *Thesium alpinum*, Alpen-Bergflachs, according to floristic knowledge of Rolf Holderegger and Michèle Büttner; 1: still occurring; 0: no longer occurring / extinct.

flora-change

display_name: flora-change

occurrence

display_name: occurrence

plant-species

display_name: plant-species

uetliberg

display_name: uetliberg

zurich

display_name: zurich

en: Plant species list from 1775 and 2020 for Uetliberg Zürich


en: trophic-networks birds arthropoda dna-metabarcoding urban-biodiversity

en: Bioinformatic report.

en: Raw data including fasta files, OTU counts and taxonomic assignments.

en:
We captured birds in urban parks and peri-urban forests in the cities of Lugano, Zurich (Switzerland) and Napoli (Italy). The urban sites were located in urban forests (Lugano, Napoli) and in a cemetery (Zurich). Bird faecal samples were stored in a screw-capped tube (2 ml), which was previously filled with 1 ml ethanol puriss. (Sigma-Aldrich) under sterile conditions. We wore single-use nitrile gloves and used sterile toothpicks to collect solid samples. The tubes were initially stored in the refrigerator during the field campaign and no later than seven days after collection at -20°C until prepared for DNA extraction.
DNA extraction and library preparation was performed at WSL Phytopathology facilites, Sequencing was performed at Lausanne Genomic Technologies Facility (University of Lausanne; https://wp.unil.ch/gtf/) on an AVITI benchtop sequencing system (Element Biosciences). Bioinformatics was performed at the Genetic Diversity Center (ETH Zurich) using a custom pipeline.

arthropoda

display_name: arthropoda

birds

display_name: birds

dna-metabarcoding

display_name: dna-metabarcoding

trophic-networks

display_name: trophic-networks

urban-biodiversity

display_name: urban-biodiversity

educ

en: Education, culture and sport

en: Metabarcoding of urban and forest bird faecal samples


en: carbohydrates isotopes tree-species methoxy-groups common-garden

en: The resource contains a metadata sheet explaning the variables, as well as a sheet with the actual species and isotope data.

en: This dataset contains hydrogen and carbon isotope data from 73 tree and shrub species grown in a common garden (Kannenfeldpark) in Basel, Switzerland. Leaf and twig samples were collected in August 2019. The isotope measurements cover various organic compounds, including sugars, cellulose, and (lignin) methoxy groups, as well as leaf and twig xylem water. Details on sample preparation and isotope analysis are provided in Schuler et al. (2023) for carbohydrates and water, and in Wieland et al. (in review) for methoxy groups.

carbohydrates

display_name: carbohydrates

common-garden

display_name: common-garden

isotopes

display_name: isotopes

methoxy-groups

display_name: methoxy-groups

tree-species

display_name: tree-species

envidat

en: EnviDat: the Environmental Data Portal

en: Stable isotope data from 73 tree and shrub species in a common garden in Basel Switzerland


maintainer: Leonie Schönbeck

en: photosynthesis fluorescence acclimation drought gas-exchange vpd pinus-sylvestris

en: Methods light response

en: Methods and parameters for light response curves

en: Methods survey

en: Parameters and methods for point measurements / survey measurements

en: Pfynwald gas exchange

en:
Full dataset of Pfynwald gas exchange data taken in the period from June 2013 to October 2020.
All metdata can be found in attached documents.
Data uploaded after quality control using guidelines by Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Instrument details

en:
Instrument details for all LiCor instruments used during collection of dataset.

Metatdata created following guidelines from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Variable names and units

en: Variable names, description and units for the Pfynwald Gas exchange data

en: Methods fluorescence

en:
Parameters and methodology for Fluorescence measurements

Metadata format from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods diurnal measurements

en:
Parameters and methodology for diurnal measurements

Metadata format from
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en: Methods ACi curves

en:
Parameters and methods for CO2 response curves of Photosynthesis.

Metatdata format by
Ely et al (2021). A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101232

en:
Gas exchange was measured on control, irrigated and irrigation-stop trees at the irrigation experiment Pfynwald, during the years 2013, 2014, 2016-2020. The measurement campaigns served different purposes, resulting in a large dataset containing survey data, CO2 response curves of photosynthesis, light response curves of photosynthesis, and fluorescence measurements. Measurements were done with LiCor 6400 and LiCor 6800 instruments. Until 2016, measurements were done on excised branches or branches lower in the canopy. From 2016 onwards, measurements were done in the top of the canopy using fixed installed scaffolds.
All metadata can be found in the attached documents.

acclimation

display_name: acclimation

drought

display_name: drought

fluorescence

display_name: fluorescence

gas-exchange

display_name: gas-exchange

photosynthesis

display_name: photosynthesis

pinus-sylvestris

display_name: pinus-sylvestris

vpd

display_name: vpd

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: 2013-2020 gas exchange at Pfynwald


en: forest shortwave-radiation fractional-snow longwave-radiation shading

en: Radiation Data 25.4.2018

en:
Spatiotemporal incoming/outgoing shortwave and longwave radiation as well as sunlit and shaded-snow view fractions below an evergreen forest stand in the Swiss alps. Data was collected on 25th of April 2018 along a 48m long, heterogeneous forest stand under partial snow cover conditions.

The presented data is used and further described in the following paper: Malle et al. (2019). Shading by Trees and Fractional Snow Cover control the Subcanopy Radiation Budget. Journal of Geophysical Research Atmospheres. DOI:10.1029/2018JD029908.

en: Sky-view fraction along the cablecar transect

en: Data is used and described in the following paper: Malle et al. (2019). Shading by Trees and Fractional Snow Cover control the Subcanopy Radiation Budget. Journal of Geophysical Research. DOI:10.1029/2018JD029908.

en: Radiation Data 18.04.2019

en:
Spatiotemporal incoming/outgoing shortwave and longwave radiation as well as sunlit and shaded-snow view fractions below an evergreen forest stand in the Swiss alps. Data was collected on 18th of April 2018 along a 48m long, heterogeneous forest stand under full snow cover conditions.

The presented data is used and further described in the following paper: Malle et al. (2019). Shading by Trees and Fractional Snow Cover control the Subcanopy Radiation Budget. Journal of Geophysical Research Atmospheres. DOI:10.1029/2018JD029908.

en: Seasonal sub-canopy radiation data

en:
Seasonal, spatially aggregated incoming and outgoing shortwave radiation below an evergreen forest stand collected with a cable car system.

The presented data is used and further described in the following paper: Malle et al. (2019). Shading by Trees and Fractional Snow Cover Control the Subcanopy Radiation Budget. Journal of Geophysical Research Atmospheres. DOI:10.1029/2018JD029908.

en: This data set consists of incoming and outgoing short- and longwave radiation as well as sunlit-snow-view-fraction as described in the JGR-Atmospheres paper "Shading by trees and fractional snow cover control the sub-canopy radiation budget", by Malle et al. (2019). Data was collected along a 48m long, heterogeneous forest transect between January and June 2018 close to Davos, Switzerland.

forest

display_name: forest

fractional-snow

display_name: fractional-snow

longwave-radiation

display_name: longwave-radiation

shading

display_name: shading

shortwave-radiation

display_name: shortwave-radiation

educ

en: Education, culture and sport

envidat

en: EnviDat: the Environmental Data Portal


high-resolution-climate-data-for-europe

title_for_slug: high-resolution-climate-data-for-europe

en: precipitation minimum-temperature cordex air-temperature daily-climate eur11 maximum-temperature europe

en: Data Access

en: CHELSA_EUR11 technical documentation

en: Technical documentation of the data with variable names and methodology.

en:
High-resolution information on climatic conditions is essential to many applications in environmental and ecological sciences. Here we present downscaled climate data for the CORDEX EUR11 domain at a high resolution of 30 arc sec. The temperature algorithm is based on statistical downscaling of atmospheric temperature lapse rates. The precipitation algorithm incorporates orographic predictors including wind fields, valley exposition, and boundary layer height. The resulting data consist of a daily temperature and precipitation timeseries.

The data is distributed under a: Creative Commons: Attribution 4.0 International (CC BY 4.0) license.

air-temperature

display_name: air-temperature

cordex

display_name: cordex

daily-climate

display_name: daily-climate

europe

display_name: europe

maximum-temperature

display_name: maximum-temperature

minimum-temperature

display_name: minimum-temperature

precipitation

display_name: precipitation

en: High resolution climate data for Europe


maintainer: Michael Lehning

en: Description

en: Full Data Description

en: Data Source

en: Hourly Gridded Wind Power Time Series

en: Coordinates of Grid Points

en:
This dataset consist of simulated hourly power production from an Enercon E82 Turbine at 100 m hub-height. It describes the hourly power output a 1MW turbine would produce in each 0.01° grid cell for the years 2016 and 2017.

100 m wind speed data was taken from the COSMO-1 model (Consortium for Small-scale Modeling 2017), which has a 0.01° horizontal resolution. The domain covered is the whole of Switzerland, with the exclusion of lakes. As such, the number of 0.01◦ pixels within Switzerland amounts to 48657.
Conversion to power output was done based on the power curve of the Enercon E82 Turbine. As power output is lower at altitude due to lower air density, we corrected for this effect as described in (Kruyt et al. 2017).

Please cite the following paper in connection with the dataset:

Paper Citation:
 > _Bert Kruyt, Jérôme Dujardin, and Michael Lehning: Improvement of wind power assessment in complex terrain: The case of COSMO-1 in the Swiss Alps, Front. Energy Res., [doi:10.3389/fenrg.2018.00102] (https://doi.org/10.3389/fenrg.2018.00102)_

mountain-wind-potential

display_name: mountain-wind-potential

topography

display_name: topography

wind-energy

display_name: wind-energy

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Dataset on Cosmo-1 based Energy Potential in Swiss Alps


en: place-attachment electrodermal-activity landscape sense-of-place urban-ecology

en: 00. EDA Raw Data

en: 04. Scripts

en: 01. EDA Processed Data

en: 03. Publication Ready Data

en: 02. Questionnaire Data

en: 05. Visuals

en: This repository contains data on EDA measurements of visitors with different cultural backgrounds in virtual urban park settings. The parks are a Persian garden (Shiraz, Iran) and a historical park in Zurich, Switzerland. The cultural background of the visitors is Persian and Central European. The repository contains raw data from EDA, processed time series and statistical procedures.

electrodermal-activity

display_name: electrodermal-activity

landscape

display_name: landscape

place-attachment

display_name: place-attachment

sense-of-place

display_name: sense-of-place

urban-ecology

display_name: urban-ecology

en: Electrodermal Activity (EDA) of Bi-cultural Visitors In Virtual Park Settings