maintainer: Leo Gallus Bont

en: cable-yarding digital-elevation-model geoinformation-software qgis-plugin swiss-geodata seilaplan swisstopo open-source digital-planning

en: View video on youtube!

media_type: text/html

format: HTML

en: Herunterladen des DHM von swisstopo Website

en:
In order to use the QGIS plugin ‘Seilaplan’ for digital cable line planning, a digital terrain model (DTM) is required. As an alternative to using the ‘Swiss Geo Downloader’ plugin, the DTM can be obtained directly from Swisstopo. In this tutorial we explain step by step how to download the necessary DTM from the Swisstopo Website, and how to use it in QGIS for the digital planning of a cable line using the plugin ‘Seilaplan’. Please note that the tutorial language is German!

Link to the elevation model on the swisstopo website: https://www.swisstopo.admin.ch/de/geodata/height/alti3d.html#technische_details

Link to the rope map website: https://seilaplan.wsl.ch

********************

Für die Verwendung des QGIS Plugins Seilaplan zur digitalen Seillinienplanung ist ein digitales Höhenmodell (DHM) nötig. Als Alternative zum Swiss Geo Downloader erklären wir in diesem Tutorial Schritt für Schritt, wie man das nötige Höhenmodell von der Swisstopo Webseite herunterladen und in QGIS zur Seillinienplanung verwenden kann.

Link zum Höhenmodell auf der swisstopo Webseite: https://www.swisstopo.admin.ch/de/geodata/height/alti3d.html#technische_details

Link zur Seilaplan-Website: https://seilaplan.wsl.ch

cable-yarding

display_name: cable-yarding

digital-elevation-model

display_name: digital-elevation-model

digital-planning

display_name: digital-planning

geoinformation-software

display_name: geoinformation-software

open-source

display_name: open-source

qgis-plugin

display_name: qgis-plugin

seilaplan

display_name: seilaplan

swiss-geodata

display_name: swiss-geodata

swisstopo

display_name: swisstopo

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Seilaplan Tutorial: DTM download from swisstopo website


maintainer: Camille Albouy

en: 12s actinopterygii atlantic-ocean barcoding teleo-primers mitochondrial-dna environmental-dna

state: active

type: dataset

media_type: text/csv

en: This file contains the metadata associated with each 12 s mitochondrial sequence.

format: CSV

en: This file contains the 12s mitochondrial sequences for the Atlantic fishes collected on a French scientific survey (Evhoe) for stock assessment.

format: SERVICE

en: This file contains the metadata associated with each scientific survey

media_type: application/pdf

en:
Mitochondrial tree based on the 12s sequences obtained for altantic fish.
This data represent the maximum likelihood phylogenetic tree allowing to assess 1) the clustering of the different sequences generated in
this study and their closest sequences recovered through a MegaBLAST on GenBank, 2) the robustness of the clades and 3) the
phylogenetic dissimilarities through the branch length of the tree among the different sequences. This tree was built with IQtree2
using the best substitution model found by modelFinder. The robustness of the node was evaluated using 1000 ultra-fast bootstrap
(node information indicated on the right of the /) and SH-aLRT procedures (node information indicated on the left of the /), using a hillclimbing nearest neighbor interchange (NNI) search to reduce the risk of overestimating branch supports with ultra-fast Bootstrap
caused by too severe model violations.

format: PDF

media_type: application/zip

format: ZIP

en: This file contains the Teleo Barcode for the Atlantic fishes collected during a French scientific survey (Evhoe) for stock assessment.

en:
The global biodiversity crisis driven by anthropogenic pressures significantly threatens marine ecosystems functioning. The rate of climate change and the impacts of anthropogenic pressures outpacing the capabilities of our observation tools, stresses the need to develop new methods to assess these rapid modifications. Environmental DNA (eDNA; DNA traces released by organisms) metabarcoding has emerged as a non-invasive method that has been widely developed over the last decade. Thanks to a large spatio-temporal coverage, high detection of rare species and its time and cost effectiveness, eDNA metabarcoding represents a promising biomonitoring tool. However, capturing fish diversity using eDNA requires a high-quality genetic reference database, which we are currently still lacking. For the South European Atlantic shelf area, we estimated that only 41% of the fish species present were recorded in the available eDNA reference databases. Improving reference databases can notably rely on opportunistic sampling enabling the reporting of sequences for new species. Therefore, the data provided here consists of barcoding 95 species of ray-finned and cartilaginous fishes over the 12S mitochondrial DNA gene. We generated 168 12S barcodes from fishes that were sampled in the Bay of Biscay (Northeast Atlantic, France) between 2017 and 2019. We also provided the “Teleo” barcode associated with a specific 12S region for each individual. In addition to the sequences, we provided for each individual the taxonomy, the details associated with the barcode (Genbank accession number, chromatograms), a photograph, as well as 5 ecomorphological measures and 11 life-history traits. These traits document several functions such as dispersion, diet, habitat use, and position in the food web. Furthermore, we provided the metadata of each sampling site (date, station, sampling hour, gear, latitude, longitude, depth) and environmental variables measured in situ (conductivity, salinity, water temperature, water density, air temperature).
This data set is highly valuable to improve the Northeast Atlantic eDNA genetic database, thus helping to better understand the effects of environmental forcing in the Bay of Biscay, a transition zone housing mixed assemblages of boreal, temperate and subtropical fish species susceptible to display variability in functional traits to adapt to changing conditions.

actinopterygii

display_name: actinopterygii

atlantic-ocean

display_name: atlantic-ocean

barcoding

display_name: barcoding

environmental-dna

display_name: environmental-dna

mitochondrial-dna

display_name: mitochondrial-dna

teleo-primers

display_name: teleo-primers

educ

fr: Éducation, culture et sport

de: Bildung, Kultur und Sport

en: Education, culture and sport

it: Istruzione, cultura e sport

fr: EnviDat: le portail de données environnementales

de: EnviDat: das Umwelt-Datenportal

it: EnviDat: il portale dei dati ambientali

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

political_level: other

wsl

capacity: public

type: organization

approval_status: approved

key: guid

key: uri

value: Envidat Harvester

en: ATLFISHREF A 12S mitochondrial reference dataset for metabarcoding Atlantic Fishes frequently caught during scientific surveys in the Bay of Biscay


maintainer: EnviDat Support

en: time-series streamflow nonstationarity hydrology ecohydrology precipitation nonlinear-deconvolution rainfall-runoff-modelling

en: An introduction to ERRA v1.06.pdf

en: "An introduction to ERRA" presents a series of vignettes that introduce some of the capabilities of the Ensemble Rainfall-Runoff Analysis (ERRA) script, and that show how to invoke them. This introduction also includes documentation for ERRA function calls, largely reproducing the documentation embedded in the ERRA script itself.

en: Demonstration scripts.zip

en: Zip-compressed folder containing demonstration scripts, source data, and output files for the ERRA results shown in "Introduction to ERRA" and in J.W. Kirchner, "Characterizing nonlinear, nonstationary, and heterogeneous hydrologic behavior using Ensemble Rainfall-Runoff Analysis (ERRA): proof of concept", Hydrology and Earth System Sciences, 2024.

en: Zip-compressed folder containing two versions of the ERRA script. ERRA_v1.06.R uses Rcpp to speed up several key calculations, but requires a C++ compiler. ERRA_v1.06_no_Rcpp.R is a bit slower but does not require a C++ compiler or Rcpp. Public use of these scripts is permitted under GNU General Public License 3 (GPL3); for details see https://www.gnu.org/licenses/

en: {{deprecated version}} An introduction to ERRA.pdf

en: {{deprecated version}} ERRA_scripts.zip

en: Zip-compressed folder containing two versions of the ERRA script. ERRA_v1.0.R uses Rcpp to speed up several key calculations, but requires a C++ compiler. ERRA_v1.0_no_Rcpp.R is a bit slower but does not require a C++ compiler or Rcpp. Public use of these scripts is permitted under GNU General Public License 3 (GPL3); for details see https://www.gnu.org/licenses/

en:
ERRA is a data-driven, nonparametric, model-independent method for quantifying rainfall-runoff relationships across a spectrum of time lags, in systems that may be nonlinear, nonstationary, and spatially heterogeneous.
Researchers using ERRA in published work should cite J.W. Kirchner, "Characterizing nonlinear, nonstationary, and heterogeneous hydrologic behavior using Ensemble Rainfall-Runoff Analysis (ERRA): proof of concept", Hydrology and Earth System Sciences, https://doi.org/10.5194/hess-28-4427-2024, 2024 (for ERRA itself) and J.W. Kirchner, "Impulse response functions for nonlinear, nonstationary, and heterogeneous systems, estimated by deconvolution and de-mixing of noisy time series", Sensors, 22(9), 3291, https://doi.org/10.3390/s22093291, 2022 (for the underlying mathematics).
This data set includes two versions of the ERRA script written in the open-source programming language R, a detailed user's guide, and sample scripts and source data for all of the results in Kirchner (2024).
These scripts are made publicly available under GNU General Public License 3; for details see https://www.gnu.org/licenses/. The data and documentation are made available under Creative Commons Attribution Share-Alike CC-BY-SA.
ETH Zurich, WSL, and James Kirchner make ABSOLUTELY NO WARRANTIES OF ANY KIND, including NO WARRANTIES, expressed or implied, that this software is free of errors or is suitable for any particular purpose. Users are solely responsible for determining the suitability and reliability of this software for their own purposes.

ecohydrology

display_name: ecohydrology

hydrology

display_name: hydrology

nonlinear-deconvolution

display_name: nonlinear-deconvolution

nonstationarity

display_name: nonstationarity

precipitation

display_name: precipitation

rainfall-runoff-modelling

display_name: rainfall-runoff-modelling

streamflow

display_name: streamflow

time-series

display_name: time-series

en: ERRA -- an R script for Ensemble Rainfall-Runoff Analysis


en: complex-terrain numerical-simulation wrf cosmo-wrf grayzone

en:
This dataset contains simulation data for *"Influence of Air Flow Features on Alpine Wind Energy Potential" (Kristianti et al., 2024).*
•	The WRF_dia2702 and WRF_dia1103 folders contain the namelist.wps, namelist.input, and output files from the simulation in the Diablerets region on 27/02/2021 and 11/03/2021, respectively.
•	The WRF_luk2310 and WRF_luk0912 folders contain the namelist.wps, namelist.input, and output files from the simulation in the Lukmanier region on 23/10/2020 and 09/12/2020, respectively.
•	The postprocessing file contains Python codes used to create figures in Kristianti et al. (2024).
**Notes:**
•	Topography input is provided by Gerber et al. (2021).
•	Simulations are run using the COSMO-WRF model developed by Gerber et al. (2018).
•	Visualization by Python code uses wrf-python provided by Ladwig et al. (2017).
*This dataset was produced by the EDGE consortium sponsored by the Swiss Federal Office of Energy's SWEET programme, Swiss National Science Foundation (SNSF): Grant 179130, and the Swiss National Supercomputing Centre (CSCS) projects s938, s1115 and s1242.*

complex-terrain

display_name: complex-terrain

cosmo-wrf

display_name: cosmo-wrf

grayzone

display_name: grayzone

numerical-simulation

display_name: numerical-simulation

wrf

display_name: wrf

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: COSMO-WRF Dataset for Swiss Alps Simulations in Gray-Zone Resolution


maintainer: Frank Techel

en: machine-learning avalanche-release-probability spatial-modelling forecast-models avalanche-forecast

en: GPS data and human-triggered avalanches

en: Contains (1) the subset of points extracted from GPS tracks recorded during backcountry touring and uploaded to the website skitourenguru.ch and (2) the corresponding subset of human-triggered avalanches. Data (1) was provided by Skitourenguru GmbH and data (2) was collected by SLF. - Variables contained are date, Swiss coordinates (x, y), aspect (N = 0, NE = 45, ...), elevation (ele), and event (event = 1, non-event = 0).

format: XLS

en: Human-triggered avalanches 2022/2023

en: The file contains the reported human-triggered avalanches. The variables are as follows: id, release date (date), name, Swiss coordinates (x,y), elevation (ele), remark, reported avalanche size expressed using avalanche activity index (sizeAAI), aspect, event type (type), event (yes = 1, no = 0)

en: Model predictions (interpolated)

en: The zip file contains csv-files the interpolated model predictions for three models, in forecast and nowcast-mode, for the three different data sets, as described in the publication.

en: Snowline estimates 2023/2024

en: Daily snowline estimates provided by observers for North (aspect = 0) and South (aspect = 180) slopes for the 2023/2024 season. For aspects in between North and South, values are interpolated. Contains observation date (date), coordinates (Swiss coordinates x, y), snowline elevation (snowline), and aspect.

en: Model predictions (raw data)

en: Model predictions (raw data) for three models, in nowcast and forecast mode. Not all models are available for both seasons. - These data are the basis for the interpolated predictions, which can be found in the other zip-folder

en: Natural avalanches 2023/2024

en: Natural avalanche observation (dry avalanches). 2023/2024 forecasting season.

en: Avalanche forecast

en: Data contains forecasts relating to dry-snow avalanche conditions only. Forecast issued at 17.00 local time. Contains variables for the warning region (sector_id), publication date (date), danger level - sub-level combination expressed using numeric values (integer value of danger level -0.33 for sub-level minus, -0 for sub-level neutral, +0.33 for sub-level plus, altitude as indicated in the bulletin, and whether aspect (North = 0, Northeast = 45, ...) was indicated in the bulletin (no: 0, yes: 1).

en: Natural avalanches 2022/2023

en: Natural avalanche observation (dry avalanches). 2022-2023 forecasting season.

en: Human-triggered avalanches 2023/2024

en: Snowline estimates 2022/2023

en: Daily snowline estimates provided by observers for North (aspect = 0) and South (aspect = 180) slopes for the 2022/2023 season. For aspects in between North and South, values are interpolated. Contains observation date (date), coordinates (Swiss coordinates x, y), snowline elevation (snowline), and aspect.

en: Randomly sampled subset of grid points from 1 km DEM

en: Contains the randomly sampled subset of grid points from 1 km DEM. Three variables: coordinates (x, y) and elevation (elev).

en:
This data set was used in the analysis by Techel et al. **Can model-based avalanche forecasts match the discriminatory skill of human danger level forecasts? A comparison from Switzerland**. Please note that the title of the preprint was *Forecasting avalanche danger: human-made forecasts vs. fully automated model-driven predictions*, submitted to *Natural Hazards Earth System Sciences* on 20 Aug 2024.
The final manuscript used data from three forecasting seasons (2022/2023, 2023/2024, 2024/2025) , the preprint two forecasting seasons (2022/2023, 2023/2024) .
Currently, the repository contains data from two avalanche forecasting seasons in Switzerland. The third season will be added (to be done, 30 June 2025).
**Interpolated predictions**
- The .zip file contains the interpolated predictions for the three models in nowcast- and forecast- mode. This data is needed to reproduce the figures and tables in the submitted preprint.
The other data are the **raw data** underlying the interpolations:
- Avalanche forecast by WSL Institute for Snow and Avalanche Research SLF, published at 17.00 local time, valid for the following 24 hours and relating to dry snow avalanche conditions.
- Model predictions in *nowcast*- and *forecast*-mode for three models (*danger level*, *instability*, *natural avalanche*), valid for 12.00 local time
- Subset of points extracted from GPS tracks (courtesy of Skitourenguru GmbH)
- Avalanche observations - natural avalanches and human-triggered avalanches
- Estimates of the snowline
- Randomly chosen subset of grid points used for generating reference distributions
For details regarding the data sets refer to the publication.

avalanche-forecast

display_name: avalanche-forecast

avalanche-release-probability

display_name: avalanche-release-probability

forecast-models

display_name: forecast-models

machine-learning

display_name: machine-learning

spatial-modelling

display_name: spatial-modelling

educ

en: Education, culture and sport

en: Evaluating the predictive performance of human avalanche forecasts and model predictions in Switzerland


maintainer: Jonas Stillhard

en: long-term-data-sets dem stand-inventory-data forest-structure forest fagus-sylvatica carpathian-biosphere-reserve permanent-forest-plot-data forest-dynamics primeval-beech-forest

en: Dataset

mimetype: application/zip

en:
In 2000, a permanent forest plot of 10 ha has been established in the core zone of the primeval beech forest of Uholka.
 All living and dead trees with a diameter at breast height (DBH) ≥ 60 mm were identified to species, DBH measured, stems tagged and mapped.
Since then, the plot has been remeasured in 2005, 2010, and 2015. In total, 4,820 individual trees were measured with 14,116 individual measurements throughout all four inventories.
In spring 2018, an Airborne Laser Scan was carried out, covering the Uholka‐Shyrokyi Luh forest. This data set allows us to derive a high‐resolution digital elevation model (DEM) of the plot area.
The data set allows for important insights into the development and the spatial and temporal dynamics of primeval beech forests.
The detailed dataset description can be found in Stillhard et. al (2019): https://doi.org/10.1002/ecy.2845

carpathian-biosphere-reserve

display_name: carpathian-biosphere-reserve

dem

display_name: dem

fagus-sylvatica

display_name: fagus-sylvatica

forest

display_name: forest

forest-dynamics

display_name: forest-dynamics

forest-structure

display_name: forest-structure

long-term-data-sets

display_name: long-term-data-sets

permanent-forest-plot-data

display_name: permanent-forest-plot-data

primeval-beech-forest

display_name: primeval-beech-forest

stand-inventory-data

display_name: stand-inventory-data

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Stand inventory data from the 10‐ha forest research plot in Uholka, Ukraine


maintainer: Frank Hagedorn

en: climate-change biomass-dynamics plant-traits soil-nutrients treeline-ecosystems plant-community

en: Data on soils, tree biomass, plant nutrients, rock mineralogy, climate of treeline ecosystems in Khibiny mountains, Kola Penninsula, Russia

en: Data on soil nutrients and charcteristics, tree and understory biomass, foliage nutrients, mineralogy, soil temperature and moisture along an elevation gradient from boreal forest to mountain tundra in teh Khibiny mountains (Kola Penninsula, Russia). Samples were taken along two gradients at 7 elevation level either under tree canopy (tree) and in open areas (open).

biomass-dynamics

display_name: biomass-dynamics

climate-change

display_name: climate-change

plant-community

display_name: plant-community

plant-traits

display_name: plant-traits

soil-nutrients

display_name: soil-nutrients

treeline-ecosystems

display_name: treeline-ecosystems


en: isotopes methoxy-groups carbohydrates tree-species common-garden

en: The resource contains a metadata sheet explaning the variables, as well as a sheet with the actual species and isotope data.

en: This dataset contains hydrogen and carbon isotope data from 73 tree and shrub species grown in a common garden (Kannenfeldpark) in Basel, Switzerland. Leaf and twig samples were collected in August 2019. The isotope measurements cover various organic compounds, including sugars, cellulose, and (lignin) methoxy groups, as well as leaf and twig xylem water. Details on sample preparation and isotope analysis are provided in Schuler et al. (2023) for carbohydrates and water, and in Wieland et al. (in review) for methoxy groups.

carbohydrates

display_name: carbohydrates

common-garden

display_name: common-garden

isotopes

display_name: isotopes

methoxy-groups

display_name: methoxy-groups

tree-species

display_name: tree-species

en: Stable isotope data from 73 tree and shrub species in a common garden in Basel Switzerland


maintainer: Virginie Marques

en: switzerland vert01 sper01 environmental-dna freshwater edna spermatophytes vertebrates

en: Data access

en:
Catchment-based sampling of river eDNA integrates terrestrial and aquatic biodiversity of alpine landscapes

From 22-Jun-2020 to 26-Jun-2020, we sampled five sites comprising one low, two intermediate and two high-elevation sites per catchment (Fig. 1a). We visited two catchments per day—one in the morning and one in the afternoon—for a total of ten catchments. All samples per catchment were collected within a maximum four-hour period by three groups of samplers. The intermediate and high-elevation sites were situated along two tributaries leading into the low-elevation site of the river. We used three filters for each relative elevation class and filtered 60 L per relative elevation class. We sampled 30 L per tributary for a combined volume of 60 L at the intermediate and high-elevation sites. In total, 180 L were sampled in total per catchment. A filtration device composed of either the Athena® peristaltic pump (Proactive Environmental Products LLC; 1 L/min nominal flow) or the Subspace® underwater peristaltic pump (Subspace Pictures; 1 L/min nominal flow), combined with a VigiDNA® 0.2 µM cross-flow filtration capsule (VigiDNA, SPYGEN) was used in order to filter a large water volume. We used a finer mesh than the recommended VigiDNA® 0.45 µM cross-flow filtration capsule to maximise the capture of biological material since mountain water does not transport high quantities of sediments. For each filtration capsule, we used disposable sterile tubing. At the end of each filtration, we emptied the water inside the capsules, replaced it with 80 ml of CL1 conservation buffer (SPYGEN), and stored it at room temperature. We followed a strict contamination control protocol in both field and laboratory stages (Goldberg et al. 2016; Valentini et al. 2016). Each water sample was processed using disposable gloves and single-use filtration equipment. We used two primer sets targeting vertebrates (Vert01, forward: − TTAGATACCCCACTATGC, reverse: − TAGAACAGGCTCCTCTAG, mean marker length: 97 bp) and spermatophytes (g-h/Sper01, forward: − GGGCAATCCTGAGCCAA, reverse: CCATTGAGTCTCTGCACCTATC, mean marker length: 48 bp). Though both primers are relatively broad with low species-level resolution, we selected them as the goal was to minimise cost and effort and maximise the identification of a broad range of taxa which can represent the species assemblages of the region. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).

edna

display_name: edna

environmental-dna

display_name: environmental-dna

freshwater

display_name: freshwater

spermatophytes

display_name: spermatophytes

switzerland

display_name: switzerland

vertebrates

display_name: vertebrates

en: Environmental DNA Freshwater Switzerland VaudCatchment Modipl 2020


maintainer: Aline Frossard

en: ecosystem-functions beta-diversity microbial-respiration microbial-biodiversity soil-respiration

en: Bacterial amplicon sequencing

en: Bacterial ASVs and taxonomic tables

en: Microbial functions and metadata

en: Extracellular enzyme activities, respiration and sites metadata

en: Fungal amplicon sequencing

en: Fungal ASVs and taxonomic tables

en: Structural and functional changes of microbial communities in ephemeral stream sediments and adjacent soils between was assessed in an artificial newly created catchment at 3 and 13 years after catchment construction. Bacterial and fungal communities, respiration and extracellular enzyme activities were assessed.

beta-diversity

display_name: beta-diversity

ecosystem-functions

display_name: ecosystem-functions

microbial-biodiversity

display_name: microbial-biodiversity

microbial-respiration

display_name: microbial-respiration

soil-respiration

display_name: soil-respiration

educ

en: Education, culture and sport

en: Chicken Creek 10 years


en: strategic-spatial-planning spatial-planning europe strategic-projects large-scale-urban-development-projects land-use-transformations land-use-change urban-transformations

en: QCA data set large-scale urban development projects

media_type: text/plain

en: Please refer to the sections: 3. The data set lsUDPs: 3.1 Selection of cases and data collection; 3.2 Data management and operationalization in the Metadata for further details on this resource.

format: TXT

mimetype: text/plain

en: QCA R script large-scale urban development projects Europe

en:
For the set up of this R script, we used the “QCA” (Duşa, 2019) and “SetMethods” (Oana and Schneider, 2018) R packages.

The following further resources were also used:
Dusa, A. (2019). QCA with R: A comprehensive resource. Springer: Berlin.
Schneider, C. Q., & Wagemann, C. (2012). Set-theoretic methods for the social sciences. A guide to qualitative comparative analysis. Cambridge: Cambridge University Press.
Thomann, E., Oana, I.-E., & Wittwer, S. (2018). Performing fuzzy- and crisp set QCA with R. A user-oriented beginner's guide. Retrieved from http://www.evathomann.com/links/qca-r-manual

en:
Table of Content: 1. General context of the data set "lsUDPs" ; 2. Background and aims of the study using the data set lsUDPs; 3. The data set lsUDPs: 3.1 Selection of cases and data collection; 3.2 Data management and operationalisation

1. General context of the data set "lsUDPs"
The data set "lsUDPs" has been generated as part of the CONCUR research project (https://www.wsl.ch/en/projects/concur.html) led by Dr. Anna M. Hersperger and funded by the Swiss National Science Foundation (ERC TBS Consolidator Grant (ID: BSCGIO 157789) for the period 2016-2020. The CONCUR research project is interdisciplinary and aims to develop a scientific basis for adequately integrating spatial policies (in this case, strategic spatial plans) into quantitative land-change modelling approaches at the urban regional level. The first stage (2016-2017) of the CONCUR project focussed on 21 urban regions in Western Europe. The urban regions were selected through a multi-stage strategy for empirical research (see Hersperger, A. M., Grădinaru, S., Oliveira, E., Pagliarin, S., & Palka, G. (2019). Understanding strategic spatial planning to effectively guide development of urban regions. Cities, 94, 96–105. https://doi.org/10.1016/j.cities.2019.05.032 ).

2. Background and aims of the study using the data set lsUDPs
As part of the CONCUR project, a specific task was to examine the relationship between strategic spatial plans and the formulation and implementation (i.e. urban land change) of large-scale urban development projects in Western Europe.
Strategic urban projects are typically large-scale, prominent urban transformations implemented locally with the aim to stimulate urban growth, for instance in the form of urban renewals of deprived neighborhoods, waterfront renewals and transport infrastructures. While strategic urban projects are referred to in the literature with multiple terms, in the CONCOR project we call them large-scale urban development projects (lsUDPs).
Previous studies acknowledged both local and supra-local (or structural) factors impacting the context-specific implementation of lsUDPs. Local governance factors, such as institutional capacity, coordination among public and private actors and political leadership, intertwine with supra-local conditions, such as state re-scaling processes and devolution of state competencies in spatial planning, de-industrialisation and increasing social inequality. Hence, in implementing lsUDPs, multi-scalar factors act in combination.
Because the formulation and implementation of lsUDPs require multi-scalar coordination among coalitions of public and private actors over an extended period of time, they are generally linked to strategic spatial plans (SSPs). Strategic spatial plans convey collective visions and horizons of action negotiated among public and private actors at the local and/or regional level to steer future urban development, and can contain legally binding dispositions, but also indicative guidelines.
The key question remains as to what extent large-scale urban development projects and strategic spatial plans can be regarded as aligned. By alignment, or “concordance”, we mean that strategic projects are formulated and implemented as part of the strategic planning process (“high concordance”), or that the strategic role of projects is reconfirmed in (subsequent) strategic plans (“moderate concordance”). Lack of concordance is found when lsUDPs have been limitedly (or not at all) acknowledged in strategic spatial plans.
We assume that certain local and supra-local factors, characterising the development of the projects, foster (but not strictly “cause”) the degree of alignment between lsUPDs and SSPs. In this study, we empirically examine how, and to what extent, the concordance between 38 European large-scale urban development projects and strategic plans (outcome: CONCOR) has been enabled by five multi-scalar factors (or conditions): (i) the role of the national state (STATE), (ii) the role of (inter)national private actors (PRIVATE), (iii) the occurrence of supra-regional external events (EVENTS), (iv) the degree of transport connectivity (TRANSP), and (v) local resistance from civil society (RESIST). We adopted a (multi-data) case-based qualitative strategy for empirical research and applied the formalised procedure of within- and cross-case comparison offered by fuzzy-set Qualitative Comparative Analysis appropriate for the goal of this study. Based on set theory, QCA formally integrates contextual sensitivity to case specificities (within-case knowledge) with systematic comparative analysis (across-case knowledge).
The research question the data set has been created to reply to is the following: which conditions, and combinations of conditions, enable the concordance between large-scale urban development projects and strategic spatial plans?
The conditions (“independent variables”) considered are. STATE: the set of large-scale urban projects characterized by a high degree of state intervention and support in their formulation and implementation, PRIVATE: the set of large-scale urban projects characterized by a high degree of involvement of (inter)national private actors in their formulation and implementation, EVENTS: the set of large-scale strategic projects whose formulation and implementation have been strongly affected by unforeseen international events and/or global trends, TRANSP: the set of large-scale strategic projects with a high degree of road and/or transit connectivity, and RESIST: set of large-scale strategic projects whose realization has been characterized by resistances that have substantially delayed or modified the project implementation.
The outcome (“dependent variable”) under analysis is CONCOR: the set of large-scale urban projects having a high degree of concordance/alignment/integration with strategic spatial plans

3. The data set lsUDPs

   3.1 Selection of cases and data collection
To generate the current data set on large-scale urban development projects in European urban regions (data set "lsUDPs"), we identified 35 large-scale urban development projects in a sample of the 21 Western urban regions considered in the CONCUR project (see supra, Hersperger et al. 2019): Amsterdam, Barcelona, Copenhagen, Hamburg, Lyon, Manchester, Milan, Stockholm, Stuttgart. The criteria we followed to identify the 35 large-scale urban development projects are: geographical location, size (large-scale), site (located either in the city core or in the larger urban region) and urban function (e.g. housing, transportation infrastructures, service and knowledge economic functions). Employing these criteria facilitated the selection of diverse large-scale urban development projects while still ensuring sufficient comparability.
In 2016, we performed 47 in-depth interviews with experts in urban and regional planning and large-scale strategic projects and infrastructure (i.e. academics and practitioners) about the formulation, implementation and development (1990s–2010s) of each project in each of the 9 selected urban regions. On average, each interviewee answered questions on 3.1 large-scale urban development projects. Three cases were subdivided into two cases because a clear differentiation between specific implementation stages was identified by the interviewees (expansion of the Barcelona airport, cases “bcn_airport80-90” and “bcn_airport00-16”; realisation of Lyon Part-Dieu, cases “lyo_partdieu70-90” and “lyo_partdieu00-16”; MediaCityUK, cases “man_salfordquays80-00” and “man_mediacityuk00-16”). Therefore, from the initial 35 cases, the final number of analysed cases in the lsUDPs dataset is 38.

    3.2 The data set lsUDPs: Data management and operationalisation
Interviews were fully transcribed and analysed through MAXQDA (version 12.3, VERBI GmbH, Berlin, Germany), and intercoder agreement was evaluated on a sample of nine interviews. We also compiled “synthetic case descriptions” (SCD) for each case (totalling more than 160 SCDs) to spot potential inconsistencies among interviewees’ accounts and to facilitate completion of the “calibration table” for each case (see below). An online expert survey distributed to the interviewees (response rate 78%) helped systematise the information collected during the interviews. We also consulted both academic and gray literature on the case studies to check for possible ambiguity and inconsistencies in the interview data, and to solve discrepancies between our assigned set membership scores and questionnaire values. Site visits were also carried out to retrieve additional information on the selected cases.
For each case (i.e. each of the 38 selected large-scale urban development projects), we operationalised each condition (i.e. STATE, PRIVATE, EVENTS, TRANSP, RESIST) and the outcome (CONCOR) in terms of sets, for subsequent application of Qualitative Comparative Analysis. This process is called “calibration”; we used a number of indicators for each condition to qualitatively assess each large-scale project across the conditions. The case-based qualitative assessment was then transformed into fuzzy-set membership values. Fuzzy-set membership values range from 0 to 1, and should be conceived as “fundamentally interpretative tools” that “operationalize theoretical concepts in a way that enhances the dialogue between ideas and evidence” (Ragin 2000:162, in “Fuzzy-set Social Science”. Chicago: University Press). We employed a four-value fuzzy-set scale (0, 0.33, 0.67, 1) to “quantify” into set membership scores the individual histories of cases retrieved from interview data. Only the condition TRANSP was calibrated as a crisp-set (0, 1).
The translation of qualitative case-based information into numerical fuzzy-set membership values was iteratively performed by populating a calibration table following standard practices recently emerged in QCA when dealing with qualitative (interview) data.

europe

display_name: europe

land-use-change

display_name: land-use-change

land-use-transformations

display_name: land-use-transformations

large-scale-urban-development-projects

display_name: large-scale-urban-development-projects

spatial-planning

display_name: spatial-planning

strategic-projects

display_name: strategic-projects

strategic-spatial-planning

display_name: strategic-spatial-planning

urban-transformations

display_name: urban-transformations

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: lsUDPS Large-scale urban development projects in European urban regions


maintainer: Yohann Chauvier

en: survey-effort covariate-correction independent-dataset random-stratified-sampling background-data cluster plant-species target-group point-process-model environmental-stratification

en: Non-copyright data, scripts, diversity outputs

en:
Aim: While species distribution models (SDMs) are standard tools to predict species distributions, they can suffer from observation and sampling biases, particularly presence-only SDMs that often rely on species observations from non-standardized sampling efforts. To address this issue, sampling background points with a target-group strategy is commonly used, although more robust strategies and refinements could be implemented. Here, we exploited a dataset of plant species from the European Alps to propose and demonstrate efficient ways to correct for observer and sampling bias in presence-only models.

Innovation: Recent methods correct for observer bias by using covariates related to accessibility in model calibrations (classic bias covariate correction, Classic-BCC). However, depending on how species are sampled, accessibility covariates may not sufficiently capture observer bias. Here, we introduced BCCs more directly related to sampling effort, as well as a novel corrective method based on stratified resampling of the observational dataset before model calibration (environmental bias correction, EBC). We compared, individually and jointly, the effect of EBC and different BCC strategies, when modelling the distributions of 1’900 plant species. We evaluated model performance with spatial block split-sampling and independent test data, and assessed the accuracy of plant diversity predictions across the European Alps.

Main conclusions: Implementing EBC with BCC showed best results for every evaluation method. Particularly, adding the observation density of a target group as bias covariate (Target-BCC) displayed most realistic modelled species distributions, with a clear positive correlation (r≃0.5) found between predicted and expert-based species richness. Although EBC must be carefully implemented in a species-specific manner, such limitations may be addressed via automated diagnostics included in a provided R function. Implementing EBC and bias covariate correction together may allow future studies to address efficiently observer bias in presence-only models, and overcome the standard need of an independent test dataset for model evaluation.

background-data

display_name: background-data

cluster

display_name: cluster

covariate-correction

display_name: covariate-correction

environmental-stratification

display_name: environmental-stratification

independent-dataset

display_name: independent-dataset

plant-species

display_name: plant-species

point-process-model

display_name: point-process-model

random-stratified-sampling

display_name: random-stratified-sampling

survey-effort

display_name: survey-effort

target-group

display_name: target-group

en: Novel methods to correct for observer and sampling bias in presence-only species distribution models


en: vertical-wind-motion saltation boundary-layer-winds snow-cover snow-depth

en: Data Compilation

en: Compressed TXT files

en:
The data correspond to the experiments presented and discussed in a paper regarding the interaction between turbulent wind fluctuations and snow saltation mass-fluxes (Paterna, 2016). Each of the nine data files corresponds to a different experiment presented in the paper and conducted in the winter 2014/2015 in the WSL/SLF cold wind tunnel in Davos. For each file the five columns indicate the time from the beginning of the experiment, the streamwise (u’) and the vertical (w’) wind velocity fluctuations, the streamwise (qx) and the vertical (qz) snow mass-flux components. From these time-series the scales of the snow saltation and of the turbulent flow are obtained with respect to the eddy-cycles and snow saltation cycles. From spectral analysis of the time-series a decoupling of the snow saltation from the turbulence forcing reveals two regimes of interaction: a turbulence-dependent regime occurring with weak saltation, and a turbulence-independent regime with strong saltation. Further details can be found at the link below.

Publication http://onlinelibrary.wiley.com/doi/10.1002/2016GL068171/abstract

boundary-layer-winds

display_name: boundary-layer-winds

saltation

display_name: saltation

snow-cover

display_name: snow-cover

snow-depth

display_name: snow-depth

vertical-wind-motion

display_name: vertical-wind-motion

en: Wind tunnel measurement data of drifting snow and turbulent wind fluctuations


en: long-term-monitoring air-pollution forest monitoring long-term-forest-ecosystem-research

en: FORECOMON – Proceedings

en: Latest version

en: Link to Proceedings in DORA WSL

en: Deprecated version 1.0

en: First version of the proceedings containing errors. This early version it is kept, for traceability purposes, in conformance with DOI rules.

en:
Forest monitoring to assess forest functioning under air pollution and climate change. Proceedings.
FORECOMON 2021 - the 9th forest ecosystem monitoring conference.
7-9 June 2021, WSL, Birmensdorf, Switzerland

The goal of FORECOMON 2021 is to highlight the extensive ICP Forests data series on forest growth, phenology and leaf area index, biodiversity and ground vegetation, foliage and litter fall, ambient air quality, deposition, meteorology, soil and crown condition. We combine novel modeling and assessment approaches and integrate long-term trends to assess air pollution and climate effects on European forests and related ecosystem services. Latest results and conclusions from local scale to European scale studies will be presented and discussed.

Copyright © 2021 by WSL, Birmensdorf
The authors are responsible for the content of their contribution.

air-pollution

display_name: air-pollution

forest

display_name: forest

long-term-forest-ecosystem-research

display_name: long-term-forest-ecosystem-research

long-term-monitoring

display_name: long-term-monitoring

monitoring

display_name: monitoring

educ

en: Education, culture and sport

en: Forest monitoring to assess forest functioning under air pollution and climate change. Proceedings. FORECOMON 2021 - the 9th forest ecosystem monitoring conference. 7–9 June 2021, Birmensdorf, Switzerland


en: liverworts fen mosses vegetation-survey raised-bog sphagnum cover biodiversity-monitoring observer-bias

en: Releve data

en: The CSV file contains all releves considered in the mentioned study. The columns include plot identification, survey period, survey year, habitat category of the surveyed object, vegetation type of the plot, anonymized identification of the observer, observer expertise category, the observers survey experience, scaled mean indicator values (i.e., light, nutrients, reaction, temperature and wetness), counts for the four groups (all species, liverworts, mosses exkl. Sphagnum spp. and Sphagnum spp.), the size categories (small, medium, large) and the modified cover classes (NA, r, +, 1, 2, 3-5).

en:
This dataset contains bryophyte species count data and information about the observers bryophyte expertise for 2950 relevés conducted from 2011 to 2023 on 10-m2 plots in a long-term monitoring program in Switzerland. Plots were situated in raised bogs and fens of national importance, which were distributed across the whole country. The majority of the plots is represented by two relevés as sites are revisited every six years. The dataset was used in the paper mentioned below to test if species richness estimates differed among categories of observer expertise.

Moser T, Boch S, Bedolla A, Ecker KT, Graf UH, Holderegger R, Küchler H, Pichon
NA, Bergamini A (2025) Greater observer expertise leads to higher liverwort species richness in bryophyte surveys. _Journal of Vegetation Science_.

biodiversity-monitoring

display_name: biodiversity-monitoring

cover

display_name: cover

fen

display_name: fen

liverworts

display_name: liverworts

mosses

display_name: mosses

observer-bias

display_name: observer-bias

raised-bog

display_name: raised-bog

sphagnum

display_name: sphagnum

vegetation-survey

display_name: vegetation-survey

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.


maintainer: Anita C Risch

en: soil-properties herbivore-exclusion anthropogenic-management nutrient-addition microbial-biomass-carbon climate microbial-respiration

en: Risch et al. GEB_data.xlsx

en:
Study sites and experimental design
We collected data from 23 sites that are part of the Nutrient Network Global Research Cooperative (NutNet, https://nutnet.umn.edu/). The mean annual air temperature (MAT) across these sites ranged from -4 to 22°C, mean annual precipitation (MAP) from 252 to 1592 mm, and elevations from 6 to 4261 m above sea level (Fig 1a, Supplementary Table S1), hence cover a wide range of climatic conditions under which grasslands occur (Fig 1b). Soil organic C concentrations ranged between 0.8 to 7.8%, soil total N concentrations between 0.1 and 0.6%, and the soil C:N ratio between 9.1 and 21.5. Soil clay content spanned from 3.0 to 35%, and soil pH from 3.4 to 7.6 (Supplementary Table S2).
At each site, the effects of nutrient addition and herbivore exclusion were tested via a randomized-block design (Borer et al., 2014). Three blocks with 10 treatment plots each were established at each site, except for the site at bldr.us (only two blocks). Each of these 10 plots was randomly assigned to a nutrient or fencing treatment. An individual plot was 5 x 5 m, divided into four 2.5 x 2.5 m subplots. Each subplot was further divided into four 1 x 1 m square sampling plots, one of which was set aside for soil sampling (Borer et al., 2014). Plots were separated by at least 1 m wide walkways. We collected soil samples from four different treatments for this study: (i) untreated control plots (Control), (ii) herbivore exclusion plots (Fence), (iii) plots fertilized with N, P, K, plus nine essential macro and micronutrients (NPK), and (iv) plots with simultaneous fertilizer addition and herbivore exclusion (NPK+Fence). The experiments were established at different times in the past, with years of treatment different among sites (2 – 9 years since start of treatment; Supplementary Table S1). For the nutrient additions, all sites applied 10 g N m-2 each year as time-release urea; 10 g P m-2 yr-1 as triple-super phosphate; 10 g K m-2 yr-1 as potassium sulfate. A micro-nutrient mix (Fe, S, Mg, Mn, Cu, Zn, B, Mo, Ca) was applied at 100 g m-2 together with K in the first year of treatments but not thereafter.
We excluded large vertebrate herbivores (Fence) by fencing two plots, one with and one without NPK additions, within each block. The fences excluded all aboveground mammalian herbivores with a body mass of over 50 g (Borer et al., 2014). At most sites, the fences were 180 cm high, and the fence contained a wire mesh (1 cm holes) for the bottom 90 cm with a 30 cm outward-facing flange stapled to the ground to exclude burrowing animals. Climbing and subterranean animals may potentially still access these plots (Borer et al., 2014). For slight modifications in fence design at a few sites see Supplementary Table S3. Most sites only had wild herbivores, although four sites were also grazed by domestic animals (Supplementary Table S1).

Collection of soil samples, soil microbial respiration, microbial biomass, and other soil properties
Each of the 23 sites received a package containing identical material from the Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Switzerland to be used for sampling (Risch et al., 2015; Risch et al., 2019). We collected two soil cores of 5 cm diameter and 12 cm depth in each sampling plot and composited them to measure MR, MBC, and soil chemical properties (see below). An additional sample (5 x 12 cm) was collected to assess soil physical properties. This sample remained within a steel sampling core after collection and both ends were tightly closed with plastic caps to avoid disturbance. All soils were shipped cooled to the laboratory at (Location will be disclosed after manuscript acceptance) within a few days after collection. Soils were sampled roughly 6 weeks prior to peak biomass at each site during 2015 and 2016.
To assess MR (CO2 production) in a laboratory incubation experiment we weighed duplicate soil samples (8 g dry soil equivalent) into 50-ml Falcon tubes. No additional substrate (glucose, sugar) was added to these samples. We adjusted the soil moisture of each sample to 60% field capacity. We then placed a 15 ml plastic test tube (Semadeni 1701A) containing 7.25 ml 0.05 M NaOH over each soil sample. The test tube was fixed with a plastic rod so that it was not in contact with the soil sample. The Falcon tubes were then sealed with a screw cap and placed in an incubator under completely dark conditions at 20°C. The CO2 produced by microbial respiration was absorbed by the 0.05 M NaOH. For five weeks we measured the decrease in conductivity within the 0.05 M NaOH solution on a weekly basis with a Multimeter WTW Multi 3410 (WTW GmbH, Germany) and replaced the 0.05 M NaOH with fresh solution. We included Falcon tubes without soil samples in each incubation run as blanks to test if tubes were tight and no CO2 could enter or escape. We calibrated the relationship between conductivity reduction and NaOH absorbed as follows: 400 ml 0.05 M NaOH was placed in a beaker and its conductivity was measured with the multimeter. While stirring, air containing CO2 was blown into the solution for approximately one minute, which reacts with NaOH to form Na2CO3. After this process, conductivity was measured again. We then transferred 7.25 ml of the solution into a smaller beaker and added 1 ml of 0.1 M BaCl2 to precipitate Na2CO3 and then titrated the solution with 0.05 M HCl to determine the remaining NaOH. We then repeated these steps with the remaining solution a total of nine times and plotted the conductivities (y-axis) against the NaOH consumed (x-axis, Supplementary Fig S1). This regression line was used to infer the consumption of NaOH from the conductivity reduction in the incubation experiments and to calculate CO2 evolution during incubation. In addition, we determined the optimum concentration for the NaOH solution in series of preliminary experiments, so that the concentration was not too high to become insensitive, but also not too low so that not all NaOH reacts during incubation. We then calculated MR (mg CO2-C kg dry soil-1 h-1) as total amount of CO2 released over the 5 weeks divided by the duration of the entire incubation in hrs.
Soil microbial biomass carbon (MBC; mg C kg soil-1 ) was measured at the beginning of the experiment by measuring the maximal respiratory response to the addition of glucose solution (4 mg glucose per g soil dry weight dissolved in distilled water; substrate-induced respiration method) on approximately 5.5 g of soil (J. P. E. Anderson & Domsch, 1978; Nico Eisenhauer et al., 2018; Scheu, 1992). For this purpose we used an O2-micro-compensation apparatus (Scheu, 1992). More specifically, substrate-induced respiration was calculated from the respiratory response to D-glucose for 10 hr at 20°C. Glucose was added according to preliminary studies to saturate the catabolic enzymes of microorganisms (4 mg g soil-1 dissolved in 400 ml deionized water). The mean of the lowest three readings within the first 10 hrs (between the initial peak caused by disturbing the soil and the peak caused by microbial growth) was taken as maximum initial respiratory response (MIRR; ml O2 kg soil-1 h-1) and microbial biomass (mg C kg soil-1) was calculated as 38 x MIRR (Beck et al., 1997; Cesarz et al., 2022; Thakur et al., 2015).
The rest of the composited sample was dried at 65°C for 48 h, ground and sieved (2 mm mesh) to assess the soil pH, mineral soil total C and N and C:N ratio, and mineral soil organic C (Risch et al., 2019). The undisturbed sample was used to assess water holding capacity (WHC), bulk density (BD), and soil texture [sand, silt, clay; methods in (Risch et al., 2019)]. We used the percentage of sand and clay as an indicator of soil texture in this study. MAT (°C), MAP (mm) and temperature of the wettest quarter (°C) were obtained from www.worldclim.com (Fick & Hijmans, 2017; Hijmans, Cameron, Parra, Jones, & Jarvis, 2005). These variables were selected as they were found to be drivers of soil nutrient processes across these sites in earlier studies (Risch et al., 2020; Risch et al., 2019). Mean annual soil temperatures (MAST; °C) for the 0 to 5 cm soil layer were obtained for each site from the SoilTemp maps (J. Lembrechts et al., 2021; J. J. Lembrechts et al., 2022), global gridded modelled products of soil bioclimatic variables for the 1979-2013 period at a 1-km² resolution, based on CHELSA, ERA5 and in-situ soil temperature measurements.
Numerical calculations and statistical analyses
We calculated MMQ as MR/MBC. We corrected this measure using the average soil temperature of each site (MMQsoil). This temperature correction is necessary as incubation temperatures are usually much higher than site mean annual soil temperatures (see Xu et al. 2017). MMQsoil = MMQ x Q10(MAST – 20)/10, where Q10 was assumed to be 2 (Xu et al. 2017). See Supplementary Fig S2 for comparison of air and soil temperatures across the 23 sites as well as the incubation temperature.
Some of the explanatory variables (clay, soil organic C, C:N ratio) were skewed and were thus log-transformed prior to analyses. All continuous explanatory variables were centred and scaled to have a mean of zero and variance of one. To avoid collinearity between them we filtered them using correlation analysis (Supplementary Fig S3). From the variables that were strongly correlated (Pearson’s |r| > 0.70) (Dormann et al., 2013), we selected the ones that allowed us to minimize the number of variables (Supplementary Fig S3). Specifically, soil total N concentration, soil total C concentration, soil sand content and soil bulk density were dropped from the dataset. We then assessed how these edaphoclimatic variables are related to MMQ across our global grasslands.
For this, we used linear mixed effects models (LMMs) fitted by maximum likelihood with the lme function in the nlme package (version 3.1-153) (Pinheiro, Bates, DebRoy, & Sarkar, 2021) in R version 3.6.3. (R Core Team, 2019). We used treatment as a fixed effect and plot nested in site as random effects to assess treatment differences in MMQsoil, as well as MR, and MBC. The number of years since the treatment started was included as a fixed effect in all the initial models but was not significant and therefore not retained in the models. To assess how differences in MMQsoil were affected by environmental factors (soil, climatic properties) we again used LMMs. Soil and climatic properties were included as fixed effects and plot nested in site as random effects. We did not include interactions between environmental variables. We then used the MuMin package (Barton, 2018) (version 1.42.1) to select the best models that explained the most variation based on Akaike’s information criterion (AIC; model.avg function). We used the corrected AIC (AICc) to account for our small sample size and selected the top models that fell within 4 AICc units (delta AICc < 4) (Burnham & Anderson, 2002; Johnson & Omland, 2004). We present all our top models rather than model averages. Conditional averages are provided in the Supplementary material.
Based on findings from analyses described above and the literature, we developed a conceptual model of direct and indirect relationships between both edaphoclimatic variables and experimental treatments (Supplement Figure S4) to obtain a more holistic approach in understanding how these properties affect MMQsoil. We had data from 23 sites with 272 observations. We tested this model using structural equation modelling based on a d-sep approach (Lefcheck, 2016; Shipley, 2009). We considered those environmental drivers that were included in our top LMMs, namely temperature of the wettest quarter (T.q.wet), soil pH, water holding capacity (WHC) and soil organic C (organic C; Supplementary Figure S4). These factors were allowed to directly affect MMQsoil, and via their interactions with treatments. In addition, treatments were allowed to directly affect MMQsoil. Treatments were included as dummy variables in the model. We tested our conceptual model (Supplementary Fig S4) using the piecewiseSEM package (version 2.0.2; Lefcheck, 2016) in R 3.4.0, in which a structured set of linear models are fitted individually. This approach allowed us to account for the nested experimental design, and overcome some of the limitations of standard structural equation models, such as small sample sizes (Lefcheck, 2016; Shipley, 2009). We used the lme function of the nlme package to model response variables, including site as a random factor. Good fit of the SEM was assumed when Fisher’s C values were non-significant (p > 0.05). For all significant interactions between soil or climate variables and treatments detected in the SEMs, we calculated treatment effect sizes, i.e., the differences in MMQsoil between Control and treatments as log response ratios (LRR) and plotted these values against the climate or soil factors. The LRR were defined as log(Control/Treatment), where treatment was either Fence, NPK or NPK+Fence. To assess which of the LRR-climate or soil property relationships were significant we again used LMMs, in which soil and climatic properties were included as fixed effects and plot nested in site as random effects.

en:
This dataset contains all data on which the following publication below is based.

Paper Citation:

Risch Anita C., Zimmermann, Stefan, Schütz, Martin, Borer, Elizabeth T., Broadbent, Arthur A.D., Caldeira, Maria C., Davies, Kendi F., Eisenhauer, Nico, Eskelinen, Anu, Fay, Philip A., Hagedorn, Frank, Knops, Johannes M.H., Lembrechts, Jonas, J., MacDougall, Andrew S., McCulley, Rebecca L., Melbourne, Brett A., Moore, Joslin L., Power, Sally A., Seabloom, Eric W., Silveira, Maria L., Virtanen, Risto, Yahdjian, Laura, Ochoa-Hueso, Raul (accepted). Drivers of the microbial metabolic quotient across global grasslands. Global Ecology and Biogeography

Please cite this paper together with the citation for the datafile.

The microbial metabolic quotient (MMQ; mg CO2-C mg MBC-1 h-1), defined as the amount of microbial CO2 respired (MR; mg CO2-C kg soil-1 h-1) per unit of microbial biomass C (MBC; mg C kg soil-1), is a key parameter for understanding the microbial regulation of the carbon (C) cycle, including soil C sequestration. Here, we experimentally tested hypotheses about the individual and interactive effects of multiple nutrient addition (NPK+micronutrients) and herbivore exclusion on MR, MBC, and MMQ across 23 sites (5 continents). Our sites encompassed a wide range of edaphoclimatic conditions, thus we assessed which edaphoclimatic variables affected MMQ the most and how they interacted with our treatments. Soils were collected in plots with established experimental treatments. MR was assessed in a five-week laboratory incubation without glucose addition, MBC via substrate-induced respiration. MMQ was calculated as MR/MBC and corrected for soil temperatures (MMQsoil). Using LMMs and SEMs, we analysed how edaphoclimatic characteristics and treatments interactively affected MMQsoil. MMQsoil was higher in locations with higher mean annual temperature, lower water holding capacity, and soil organic C concentration, but did not respond to our treatments across sites as neither MR nor MBC changed. We attributed this relative homeostasis to our treatments to the modulating influence of edaphoclimatic variables. For example, herbivore exclusion, regardless of fertilization, led to greater MMQsoil only at sites with lower soil organic C (<1.7%). Our results pinpoint the main variables related to MMQsoil across grasslands and emphasize the importance of the local edaphoclimatic conditions in controlling the response of the C cycle to anthropogenic stressors. By testing hypotheses about MMQsoil across global edaphoclimatic gradients, this work also helps to align the conflicting results of prior studies.

anthropogenic-management

display_name: anthropogenic-management

climate

display_name: climate

herbivore-exclusion

display_name: herbivore-exclusion

microbial-biomass-carbon

display_name: microbial-biomass-carbon

microbial-respiration

display_name: microbial-respiration

nutrient-addition

display_name: nutrient-addition

soil-properties

display_name: soil-properties


maintainer: Albrecht von Boetticher

en: dberisintermixing murgang barrier-impact-simulation natural-hazard finite-volumes hangmuren interfoam debris-flow shallow-landslide

en: Installation Instructions for debrisInterMixing-6

en: These are the installation instructions for debrisInterMixing6

mimetype: application/pdf

en:
Please install OpenFOAM 7 on a UBUNTU Linux system following the instructions given in readme_debrisintermixing-7.pdf
After a successful OpenFOAM installation, copy the applications-Folder from putMyContent-.zip into the OpenFOAM-User directory and follow the instructions in readme_debrisintermixing-7.pdf to install debrisInterMixing 7.

If you use UBUNTU 24-04 you might have troubles getting openmpi, I attached a modifiesd instruction installtionOF7Ubuntu20.04.5LTS.txt for a workaround.

en: These are the installation instructions for debrisInterMixing4

en: debrisInterMixing for OF-Version 6

en:
This version of debrisInterMixing is based on OpenFOAM Version 4.x and was tested on Ubuntu 18.04.1 LTS.
Please follow the instructions given in ReadMe_debrisInterMixing4.pdf for installation.

en:
Here debrisInterMixing until version 7 is provided for download. Further versions as well as installation instructions and tutorials and discussion forums (mostly in german) can be acessed at murgang.org (choose "als Gast anmelden" and then scroll to the bottom). The first OpenFoam-compatible Version 2.3.x are available as supplement to v. Boetticher, A., Turowski, J. M., McArdell,W. B., Rickenmann, D., Hürlimann, M., Scheidl, C., and Kirchner, J. W.: DebrisInterMixing-2.3: A Finite Volume solver for three dimensional debris flow simulations based on two calibration parameters. Part two: model validation with experiments. Geoscientific Model Development, 10, 11: 3963-3978. doi: 10.5194/gmd-10-3963-2017.
DebrisInterMixing is a Volume-of-Fluid based Finite Volume code that accounts for shear-thinning sensitive shares of fine sediment suspension together with pressure-sensitive components of the gravel grains within debris flow mixtures. All model properties can be derived from a material sample except for a grid-sensitive calibration parameter.
For more information, please contact albrecht.vonboetticher@wasserbau.ch.

For a recent summary on applications see the DFHM8 contribution at https://www.e3s-conferences.org/articles/e3sconf/abs/2023/52/e3sconf_dfhm82023_02024/e3sconf_dfhm82023_02024.html - DOI: https://doi.org/10.1051/e3sconf/202341502024

UPDATE: DebrisInterMixing for OpenFOAM-7 is available, please contact albrecht.vonboetticher@wasserbau.ch. DebrisInterMixing with OpenFOAM-10 is ready but not yet validated.

barrier-impact-simulation

display_name: barrier-impact-simulation

dberisintermixing

display_name: dberisintermixing

debris-flow

display_name: debris-flow

finite-volumes

display_name: finite-volumes

hangmuren

display_name: hangmuren

interfoam

display_name: interfoam

murgang

display_name: murgang

natural-hazard

display_name: natural-hazard

shallow-landslide

display_name: shallow-landslide

en: Three-dimensional debris flow simulation tool debrisInterMixing


en: climate humidity solar-radiation wind-speed air-temperature precipitation air-pressure

en:
Climatologies of Precipitation
Files are provided in NetCDF format with standardized metadata.
Each file encodes scale and offset parameters in its metadata. Standards-compliant software will apply these fields automatically and return values in the correct units; however, legacy or non-compliant applications may not. If there is any uncertainty regarding units, please consult the file metadata to verify the applied scale/offset and units.

en: CHELSAch-highres-climatologies: Daily Minimum Near-Surface Air Temperature

en:
Climatologies of Daily Minimum Near-Surface Air Temperature
Files are provided in NetCDF format with standardized metadata.
Each file encodes scale and offset parameters in its metadata. Standards-compliant software will apply these fields automatically and return values in the correct units; however, legacy or non-compliant applications may not. If there is any uncertainty regarding units, please consult the file metadata to verify the applied scale/offset and units.

en: CHELSAch-highres-climatologies: Daily Maximum Near-Surface Air Temperature

en:
Climatologies of Daily Maximum Near-Surface Air Temperature
Files are provided in NetCDF format with standardized metadata.
Each file encodes scale and offset parameters in its metadata. Standards-compliant software will apply these fields automatically and return values in the correct units; however, legacy or non-compliant applications may not. If there is any uncertainty regarding units, please consult the file metadata to verify the applied scale/offset and units.

en: CHELSAch-highres-climatologies: Daily Mean Near-Surface Air Temperature

en:
Climatologies of Daily Mean Near-Surface Air Temperature
Files are provided in NetCDF format with standardized metadata.
Each file encodes scale and offset parameters in its metadata. Standards-compliant software will apply these fields automatically and return values in the correct units; however, legacy or non-compliant applications may not. If there is any uncertainty regarding units, please consult the file metadata to verify the applied scale/offset and units.

en:
CHELSA is a mechanistic downscaling model that links large-scale atmospheric conditions with local topographic factors to produce very high-resolution climate data. It includes commonly used climate variables for impact modeling, such as air temperature, precipitation, humidity, solar radiation, wind speed, and derived variables.

CHELSAch-highres-climatologies is a high resolution climate dataset generated with the CHELSA downscaling model. It consists of long term - 30 year mean aggregated surface variables.

Climatological summaries are provided for: Near-Surface Wind Speed, Daily Mean Near-Surface Air Temperature, Daily Maximum Near-Surface Air Temperature, Daily Minimum Near-Surface Air Temperature. Air Temperature Lapse Rate, Total Cloud Cover Percentage, Precipitation, Surface Downwelling Shortwave Flux in Air

Files are provided in NetCDF format with standardized metadata.

air-pressure

display_name: air-pressure

air-temperature

display_name: air-temperature

humidity

display_name: humidity

precipitation

display_name: precipitation

solar-radiation

display_name: solar-radiation

wind-speed

display_name: wind-speed

educ

en: Education, culture and sport

en: CHELSAch-highres-climatologies at high resolution


en: jupyter geospatial roads density gis buffer

en: Plots

en: Random plot locations

en: Road data from OSM for the surroundings of Menzberg, Switzerland

en: Road Density Calculation (Python Notebook) online

en:
This dataset contains the road and plot data used for the geospatial analysis example showcased in "Fostering Open Science at WSL with the EnviDat Environmental Data Portal", a contribution to the 5th Open Source Geospatial Research and Education Symposium (OGRS), 2018.
The example uses Jupyter Notebook to calculate road densities in the neighbourhood of sample plot locations with Python. Road data were extracted from OpenStreetMap, while the point data (sample plots) were generated manually.

buffer

display_name: buffer

density

display_name: density

geospatial

display_name: geospatial

gis

display_name: gis

jupyter

display_name: jupyter

roads

display_name: roads

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Dataset for OGRS 2018 publication


en: birds fungal-pathogen urban insects biodiversity fungi urban-biodiversity urban-ecology

en: Data tables including individual bird data with biometry, prey species from faecal samples, and fungi species from swab samples.

en:
We captured birds in urban parks and peri-urban forests in the cities of Lugano and Zurich. The urban sites were located in an urban forest (Lugano) and in a cemetery (Zurich), and the bird assemblages were comparable with those of the surrounding forests.
We captured individual birds during sessions lasting multiple days using mist-nets, concentrating the activities within 3-4 hours after sunrise and before sunset. We extracted birds from nets using single-use nitrile gloves and gently wiped their body parts with a dry foam swab MW940 (Medical Wire & Equipment), which was then placed in a screw-capped tube (2 ml), which was previously filled with 1 ml ethanol puriss. (Sigma-Aldrich) under sterile conditions.Then, we marked each bird with an alphanumeric leg band, identified the species, determined the sex and age whenever possible, measured for relevant biometrics (e.g. wing chord), the amount of body fat and pectoral muscle (i.e. body condition), and weighed.

Afterwards, we placed each bird in a disposable paper bag within a cotton bag that ensured respiration and left it for few minutes in a safe and calm place to allow for defecation and the collection of faecal samples. The faecal sample was collected from insectivorous and omnivorous birds, and few granivorous birds that are known to occasionally eat invertebrates, such as the house sparrow Passer domesticus.
After releasing the bird, we stored the faecal sample in a screw-capped tube (2 ml), which was previously filled with 1 ml ethanol puriss. (Sigma-Aldrich) under sterile conditions. We wore single-use nitrile gloves and used sterile toothpicks to collect solid samples. The tubes were initially stored in the refrigerator during the field campaign and no later than seven days after collection at -20°C until prepared for DNA extraction.

DNA extraction and library preparation was performed at WSL Phytopathology facilites, Sequencing was performed at Lausanne Genomic Technologies Facility (University of Lausanne; [https://wp.unil.ch/gtf/](https://wp.unil.ch/gtf/)) on an AVITI benchtop sequencing system (Element Biosciences). Bioinformatics was performed at the Genetic Diversity Center (ETH Zurich) using a custom pipeline.

biodiversity

display_name: biodiversity

birds

display_name: birds

fungal-pathogen

display_name: fungal-pathogen

fungi

display_name: fungi

insects

display_name: insects

urban

display_name: urban

urban-biodiversity

display_name: urban-biodiversity

urban-ecology

display_name: urban-ecology

en: Urban bird capture data with prey species and fungal community


carabid-beetles-in-forests

maintainer: Martin K. Obrist

title_for_slug: carabid-beetles-in-forests

en: carabidae insects trapping arthropoda coleoptera running-beetles forest

en: Tab-delimited data of the according sql query.

en: SQL query used to extract the data from fauna database.

en: Data query used on Fauna Database to retrieve the submitted data.

en: Data extract in TAB-delimted format. First row is header, first column is counter.

en:
Carabidae data from all historic up to the recent projects (21.10.2019) of WSL, collected with various methods in forests of different types.

Version 2 ('FIDO_global_extract 2019-11-22_18-11-24 WSL-Forest-Carabidae') contains additional data field PROJ_FALLENBEZEICHNUNG.

Data are provided on request to contact person against bilateral agreement.

arthropoda

display_name: arthropoda

carabidae

display_name: carabidae

coleoptera

display_name: coleoptera

forest

display_name: forest

running-beetles

display_name: running-beetles

trapping

display_name: trapping

en: Carabid beetles in forests


en: pressure-perturbations landslide-testsite pore-water cces landslides tramm

en: TRAMM Ruedlingen data

en: TRAMM project data from the Ruedlingen site (exp 1 + 2). Measured parameters include soil suction, water level, soil volumetric water content, rain intensity, and soil temperature.

en:
A landslide testsite dataset related to pore water pressure perturbations on the stability of unsaturated silty sand slopes leading to the initiation and propagation of the shear deformations and eventual rapid mass movements. This project was initiated and led by the Institute of Geotechnical Engineering (IGT) of the Swiss Federal Institute of Technology (ETH Zurich) and was incorporated in a Swiss national (TRAMM) and a European Union (SafeLand) multidisciplinary research project. Field site: The experimental slope is 7.5 m wide by 35 m long, located in the Swiss lowlands on an east facing slope over-looking the river Rhine, at an altitude of ~ 350 masl. Originally there were forestry covertures of circa 80%, heights of 5-20 m. Shrubs up to 1-5 m high and a free herb layer covered ~ 50% of the surface. The average gradient was determined to be from 38° to 43° with a slightly concave surface. The underlying rock consists mainly of Molasse, which is formed by alternate layers of sea deposits under the Tethys Sea (Seawater Molasse) and land deposits (Freshwater Molasse). Several augured samples, as well as an outcrop of the bedrock about 20 m above the selected field, revealed horizontal layering of fine grained sand- and marlstone at the test site. The sandstone was later proven to be highly permeable and fissured. Grain-size distributions were determined and the soil was classified as medium-low plasticity silty sand. Site instrumentation:Measurements of soil suction, groundwater level, soil volumetric water content, rain intensity and soil temperature were taken and combined with geophysical monitoring using Electrical Resistance Tomography (ERT) and investigations into subsurface flow by means of tracer experiments. Deformations were monitored during the experiment, both on the surface via photogrammetrical methods and within the soil mass, using a flexible probe equipped with strain gauges at different points and two axis inclinometers on the top and acoustic sensors. Instruments were installed mainly in three clusters at depths of 15, 30, 60, 90, 120, and 150 cm below the ground surface over the slope, including jet-fill tensiometers, TDRs, Decagon TDRs, piezometers, soil temperature sensors, deformation probes, earth pressure cells, acoustic sensors and rain gauges. A ring-net barrier (provided by Geobrugg AG) was set up at the foot of the slope to protect the road. Experiments: A sprinkling experiment was carried out in September 2008 to investigate the hydrological and mechanical response of the slope (Experiment 1), followed by a second one to trigger a landslide in March 2009 (Experiment 2).

Publications

1. Lehmann, P., F. Gambazzi, B. Suski, L. Baron, A. Askarinejad, S. M. Springman, K. Holliger, and D. Or (2013), Evolution of soil wetting patterns preceding a hydrologically induced landslide inferred from electrical resistivity survey and point measurements of volumetric water content and pore water pressure, Water Resour. Res., 49, 7992–8004, doi:[10.1002/2013WR014560](http://dx.doi.org/10.1002/2013WR014560).

2. Springman, S. M., Kienzler, P., Casini, F., & Askarinejad, A. (2009). Landslide triggering experiment in a steep forested slope in Switzerland. In 17th International Conference of Soil Mechanics and Geotechnical Engineering, Alexandria, Egypt (pp. 1698-1701). doi: [10.3233/978-1-60750-031-5-1698](http://dx.doi.org/10.3233/978-1-60750-031-5-1698)

cces

display_name: cces

landslide-testsite

display_name: landslide-testsite

landslides

display_name: landslides

pore-water

display_name: pore-water

pressure-perturbations

display_name: pressure-perturbations

tramm

display_name: tramm

educ

en: Education, culture and sport

en: TRAMM project Ruedlingen experimental landslide dataset, Switzerland


data-analysis-toolkits

title_for_slug: data-analysis-toolkits

en: statistics uncertainty hypothesis-testing error-propagation data-analysis bayesian-inference

en: Toolkit 11: serial correlation

en: Tools for detecting and correcting for serial correlation in analyses of time series

en: Toolkit 7: hypothesis testing, significance, and power

en: An overview of basic concepts -- and common pitfalls -- in statistical hypothesis testing, statistical significance, and power analysis

en: Toolkit 2: quantifying data distributions using descriptive statistics

en: Toolkit 5: uncertainty analysis and error propagation

en: Gaussian error propagation, monte carlo methods, and first-order, second-moment error propagation

en: Toolkit 10: linear regression

en: An overview of the math, logic, and pitfalls of ordinary least-squares linear regression

en: toolkit 6: averaging in nonlinear functions

en: The average of a nonlinear function will not equal the function evaluated at its average inputs (the mean of the function will differ from from the function of the mean). This toolkit shows how to estimate that averaging bias.

en: Toolkit 12: weighted averages and their uncertainties

en: There are two different ways to calculate the uncertainty of a weighted average. Software packages often don't tell you which one they are reporting, and the resulting errors can be huge.

en: Toolkit 3: tools for transforming data

en: The ladder of powers and a few other cool transformations

en: Toolkit 8: Hodges-Lehmann estimators

en: A quick introduction to Hodges-Lehmann estimators (nonparametric measures of effect size)

en: Toolkit 9: Experimentwise error rates and statistical fishing expeditions

en: Statistical fishing expeditions, and how to avoid being misled by them

en: Toolkit 1: graphically displaying data distributions

en: Toolkit 4: confidence intervals

en:
These are condensed notes covering selected key points in data analysis and statistics. They were developed by James Kirchner for the course "Analysis of Environmental Data" at Berkeley in the 1990's and 2000's. They are not intended to be comprehensive, and thus are not a substitute for a good textbook or a good education!

License: These notes are released by James Kirchner under a Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) license.

bayesian-inference

display_name: bayesian-inference

data-analysis

display_name: data-analysis

error-propagation

display_name: error-propagation

hypothesis-testing

display_name: hypothesis-testing

statistics

display_name: statistics

uncertainty

display_name: uncertainty

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Data analysis toolkits


digitizing-historical-plague

maintainer: Christian Ginzler

title_for_slug: digitizing-historical-plague

en: plague-inventory plague-mapping palaeo-epidemiology bubonic-plague yersinia-pestis black-death plague-outbreaks historical-plague

en: We present newly digitized data on 6,929 plague outbreaks that occurred between 1347 and 1900 AD across Europe. The data base on an inventory initially published 1976. For georeferencing the information of Tele Atlas 2009 was used. The coordinates are in the reference systems ETRS89 and WGS84.

black-death

display_name: black-death

bubonic-plague

display_name: bubonic-plague

historical-plague

display_name: historical-plague

palaeo-epidemiology

display_name: palaeo-epidemiology

plague-inventory

display_name: plague-inventory

plague-mapping

display_name: plague-mapping

plague-outbreaks

display_name: plague-outbreaks

yersinia-pestis

display_name: yersinia-pestis

educ

en: Education, culture and sport

en: Digitizing historical plague


en: precipitation frost-change-velocity sdms ground-temperature aridity soil

media_type: image/tiff

en: Soil pH modified from SoilGrids

format: TIFF

en: Mean annual temperature modified from CHELSA

en: Precipitation of driest quarter modified from CHELSA

en: Frost change frequency modified from CHELSA

en: Precipitation seasonality from CHELSA

en: Soil clay content modified from SoilGrids

en: Mean diurnal range modified from CHELSA

en: Soil organic carbon content modified from SoilGrids

en: The dataset contains seven environmental layers (average annual temperature, aridity [annual precipitation divided by annual potential evapotranspiration], frost change frequency, precipitation in the driest quarter, mean diurnal temperature range, and precipitation seasonality) modified from CHELSA (https://chelsa-climate.org/) and three soil layers (soil organic matter content, pH water, and clay content) modified from SoilGrids (https://soilgrids.org/).

aridity

display_name: aridity

frost-change-velocity

display_name: frost-change-velocity

ground-temperature

display_name: ground-temperature

precipitation

display_name: precipitation

sdms

display_name: sdms

soil

display_name: soil

en: Environmental layers for SDM simulations (GDPlants)


en: laboratory-study atmosphere snow-atmosphere-interactions ice chemistry

en: Near Ambient Pressure partial Auger-Meitner electron yield X-ray absorption spectra and photon flux data. X-ray energy in eV in column 1, analyzer electron count intensity in arb. units in column 2.

en: Processed data as shown in Figure 4 of publication. X-ray energy in eV in column one, electron count intensity in arb. units in column 2.

en:
The table lists all NEXAFS raw data with the following columns:

* name:						raw file name
* xRayEkinRange_eV: 		Smallest and largest X-ray photon energy in eV
* scientaPassEnergy_eV: 	Pass energy of electron analyzer in eV
* scientaDwellTime_ms: 		Dwell time of electron analyzer in ms
* regionName:				O K-edge for all data
* scientaAcquisitionMode: 	Fixed energy (snapshot) mode
* scientaEkinRange_eV: 		Smallest and largest energy of the kinetic energy window used for detection in this work
* scientaEkinStep_eV		Not defined in fixed energy mode
* scientaLensMode:			Tune table
* scientaRegionIterations: 	Iterations (sweeps)
* scientaSequenceIterations: Iterations (sweeps)
* sampleTemp_dC: 			Temperature as monitored at the sample holder in °C
* cellPressure_mbar: 		Total pressure in measurement cell in mbar
* iceTemp_dC: 				Temperature of ice sample calculated based on vapour pressure (assuming total pressure equals partial pressure of water) in °C
* smplX_mm: 				positon of measurement spot, x dimension in mm
* smplY_mm: 				positon of measurement spot, y dimension in mm
* smplZ_mm: 				positon of measurement spot, z dimension in mm
* sealingTemp:				temperature at base of sample manipulator
* lastModifiedDatestr: 		time and date when data aquisition was finished
* sample: 					sample description

en: Data are compiled that have been used to demonstrate the impact of high water partial pressure on X-ray absorption spectra of ice.

atmosphere

display_name: atmosphere

chemistry

display_name: chemistry

ice

display_name: ice

laboratory-study

display_name: laboratory-study

snow-atmosphere-interactions

display_name: snow-atmosphere-interactions

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: An ice oxygen K-edge NEXAFS spectroscopy data set on gas-phase processing


en: fraxinus-excelsior pest-invasion ash-dieback metabolomics agrilus-palnipennis

en: Open access raw data Eisenring et al 2025.xlsx

en:
Raw data of paper: A recent ash dieback infection neither affects emerald ash borer
performance nor triggers a substantial systemic phytochemical
defense response in European ash (https://doi.org/10.1007/s10340-025-01981-4)
Raw data on emerald ash borer (EAB) weight gain, mortality, development and longevity. Raw data of ash phloem and leaf chemistry. Raw data of ash dieback (ADB) lesion length.

agrilus-palnipennis

display_name: agrilus-palnipennis

ash-dieback

display_name: ash-dieback

fraxinus-excelsior

display_name: fraxinus-excelsior

metabolomics

display_name: metabolomics

pest-invasion

display_name: pest-invasion

educ

en: Education, culture and sport

en: Raw data-A recent ash dieback infection neither affects emerald ash borer performance nor triggers a substantial systemic phytochemical defense response in European ash


swiss-fluxnet-site-lageren

title_for_slug: swiss-fluxnet-site-lageren

en: flux greenhouse-gas eddy-covariance forest swiss-fluxnet swiss-forest-lab meteorological-measurements

en: Data access

en: The flux and meteo data of the Swiss FluxNet site Lägeren are openly available from the European Fluxes Database Cluster.

en: Site description

en:
The Swiss FluxNet Site Lägeren is a managed mixed deciduous mountain forest located on the steep Lägeren mountain (NW of Zurich, Swiss Plateau). The forest is highly diverse, dominated by beech, but also including ash, maple, spruce and fir trees. Eddy covariance flux measurements were started in April 2004. The site was part of the international CarboEurope IP network and the National Air Pollution Monitoring Network (NABEL). In addition to Swiss FluxNet, the site is part of the Long-term Forest Ecosystem Research (LWF) of WSL and the biological drought and growth indicator network (TreeNet) of WSL.

Measurements

- Ecosystem flux measurements of CO2, H2O vapour are performed with the eddy-covariance method. This method is based on measurements of trace gas mixing ratios, using infrared gas analyzers (for CO2, H2O vapor), combined with wind speed and wind direction measurements, using 3D sonic anemometers. To resolve the short-term turbulent fluctuations in the atmosphere, very fast measurements are needed: we measure at 10-20 Hz, i.e., 10-20 times per second. To assess the energy budget of each ecosystem, also radiation sensors and soil climate profiles are installed at the site.
- Sub-canopy eddy fluxes (CO2, H2O), soil respiration campaigns
- Continuous CO2 profile measurements.
- Auxiliary micrometeorology and soil climate measurements.

Data availability

All data are available from the European Fluxes Database Cluster, but are also part of Fluxnet2015 dataset.

Data policy

ICOS data license:
[https://www.icos-cp.eu/data-services/about-data-portal/data-license](https://www.icos-cp.eu/data-services/about-data-portal/data-license)

Detailed site info:
[https://www.swissfluxnet.ethz.ch/index.php/sites/ch-lae-laegeren/site-info-ch-lae//](https://www.swissfluxnet.ethz.ch/index.php/sites/ch-lae-laegeren/site-info-ch-lae/)

eddy-covariance

display_name: eddy-covariance

flux

display_name: flux

forest

display_name: forest

greenhouse-gas

display_name: greenhouse-gas

meteorological-measurements

display_name: meteorological-measurements

swiss-fluxnet

display_name: swiss-fluxnet

swiss-forest-lab

display_name: swiss-forest-lab

en: Swiss FluxNet Site Lägeren


en: temperature precipitation solar-radiation soil-water-balance growing-degree-days growing-season-length relative-humidity

en: CHELSA-BIOCLIM+

en: Global extented set of bioclimatic variables at different temporal (e.g. monthly, annual, long term normals) resolution in Geotiff format.

format: GeoTIFF

en: CHELSA-BIOCLIM+ Technical Documentation

en: Technical documentation document including the variable names, units, scaling, offset, and background.

en: A multitude of physical and biological processes on which ecosystems and human societies depend are governed by climatic conditions. Understanding how these processes are altered by climate change is central to mitigation efforts. Based on mechanistically downscaled climate data, we developed a set of climate-related variables at yet unprecedented spatiotemporal detail as a basis for environmental and ecological analyses. We created gridded data for near-surface relative humidity (hurs), cloud area fraction (clt), near-surface wind speed (sfcWind), vapour pressure deficit (vpd), surface downwelling shortwave radiation (rsds), potential evapotranspiration (pet), climate moisture index (cmi), and site water balance (swb), at a monthly temporal and 30 arcsec spatial resolution globally starting 1980 until 2018. At the same spatial resolution, we further estimated climatological normals of frost change frequency (fcf), snow cover days (scd), potential net primary productivity (npp), growing degree days (gdd), and growing season characteristics for the periods 1981-2010, 2011-2040, 2041-2070, and 2071-2100, considering three shared socioeconomic pathways (SSP126, SSP370, SSP585) and five Earth system models. Time-series variables showed high accuracy when validated against observations from meteorological stations. Climatological normals were also highly correlated to observations although some variables showed notable biases, e.g., snow cover days (scd). Together, the data sets presented here allow improving our understanding of patterns and processes that are governed by climate, including the impact of recent and future climate changes on the world’s ecosystems and associated services to societies.

growing-degree-days

display_name: growing-degree-days

growing-season-length

display_name: growing-season-length

precipitation

display_name: precipitation

relative-humidity

display_name: relative-humidity

soil-water-balance

display_name: soil-water-balance

solar-radiation

display_name: solar-radiation

temperature

display_name: temperature

en: CHELSA-BIOCLIM+ A novel set of global climate-related predictors at kilometre-resolution


en: climate minimum-temperature timeseries free-climate-data century air-temperature precipitation climate-layers maximum-temperature

en: Data Access

en: CHELSA Technical Documentation

en: As the CHELSA project is continuously expanded, certain new parameters, time scales etc. are not included anymore in the original publication (Karger et al. 2017). We are therefore provide this document as a guideline of the current climatic parameters available and will expand it as new parameters or time periods will become available. Please refer to the version history for changes made in the document.

en:
CHELSAcruts is a delta change monthly climate dataset for the years 1901-2016 for mean monthly maximum temperatures, mean monthly minimum temperatures, and monthly precipitation sum. Here we use the delta change method by B-spline interpolation of anomalies (deltas) of the CRU TS 4.01 dataset. Anomalies were interpolated between all CRU TS grid cells and are then added (for temperature variables) or multiplied (in case of precipitation) to high resolution climate data from CHELSA V1.2 (Karger et al. 2017, Scientific Data). This method has the assumption that climate only varies on the scale of the coarser (CRU TS) dataset, and the spatial pattern (from CHELSA) is consistent over time. This is certainly a rather crude assumption, and for time periods for which more accurate data is available CHELSAcruts should be avoided if possible (e.g. use CHELSA V1.2 for 1979-2015). Different to CHELSA V1.2, CHELSAcruts does not take changing wind patterns, or temperature lapse rates into account, but rather expects them to be constant over time, and similar to the long term averages.

CHELSAcruts is licensed under a Creative Commons Attribution 2.0 Generic (CC BY 2.0) license.

air-temperature

display_name: air-temperature

century

display_name: century

climate

display_name: climate

climate-layers

display_name: climate-layers

free-climate-data

display_name: free-climate-data

maximum-temperature

display_name: maximum-temperature

minimum-temperature

display_name: minimum-temperature

timeseries

display_name: timeseries

envidat

en: EnviDat: the Environmental Data Portal

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: CHELSAcruts -  High resolution temperature and precipitation timeseries for the 20th century and beyond


data-broedlin-cnp

title_for_slug: data-broedlin-cnp

en: forest phosphorus mineralization carbon nitrogen soil stoichiometry dissolved-organic-matter drying-rewetting

en: Data Broedlin-CNP-Release

en: Raw data of C-N-P mobilization experiment from Oi, Oe/Oa, and A horizons of beech forest soils along a nutrient availability gradient.

en: Data Broedlin-CNP

en: Mircocosm experiment to identify the individual patterns and controls of C, N, and P mobilization in soils under beech forests. Organic and mineral horizons sampled along a nutrient availability gradient in Germany were exposed to either permanent moist conditions or to dry spells in microcosms and quantified the release of inorganic and organic C, N, and P.

carbon

display_name: carbon

dissolved-organic-matter

display_name: dissolved-organic-matter

drying-rewetting

display_name: drying-rewetting

forest

display_name: forest

mineralization

display_name: mineralization

nitrogen

display_name: nitrogen

phosphorus

display_name: phosphorus

soil

display_name: soil

stoichiometry

display_name: stoichiometry

educ

en: Education, culture and sport

en: Data Broedlin CNP


maintainer: Stephan Zimmermann

en: mass-balance nutrient sustainability soil beech

en: With this study, our aim was to estimate the nutrient fluxes relevant for assessing nutrient sustainability as accurately as possible and to calculate nutrient balances for alternative forest management scenarios. Furthermore, we tested whether mapping units from existing geologic maps can serve as a basis for forest practitioners to estimate nutrient sustainability or whether more detailed data is needed. Positive fluxes include deposition and weathering, while negative fluxes include losses due to leaching and nutrient removal through timber harvesting in the balance. Weathering and leachate losses were modeled with a geochemical model. The SwissStandSim model was used to simulate the biomass growth under different harvesting and silvicultural strategies, allowing sustainability to be assessed for each nutrient at a given intensity of use. This assessment was made per rotation period of 100 years based on two criteria: i) nutrient supply; and ii) total stocking volume.

beech

display_name: beech

mass-balance

display_name: mass-balance

nutrient

display_name: nutrient

sustainability

display_name: sustainability

en: Nutrient sustainability in beech forests