en:
The available lichen data consists of detection/nondetection data (1/0) of 373 tree-inhabiting (*corticolous*) lichen species from 416 plots surveyed 1-2 times. The lichen data were originally collected for the purpose of the Red List of epiphytic lichen species in Switzerland ([Scheidegger *et al.* 2002](https://www.bafu.admin.ch/bafu/de/home/themen/biodiversitaet/publikationen-studien/publikationen/rote-liste-gefaehrdete-arten-baum-erdbewohnende-flechten.html)), but updated to recent nomenclature for the purpose of this study.
This repository contains all the supporting data and R code for the paper:
von Hirschheydt, G., Kéry, M., Ekman, S., Stofer, S., Dietrich, M., Keller, C., Scheidegger, C. (2024) **Occupancy model reveals limited detectability of lichens in a standardised large-scale monitoring**. *Journal of Vegetation Science*.
Results and figures presented in the manuscript should be reproducible (with small differences in the latter digits due to stochasticity of the MCMC sampler) with the provided data and code.
The downloadable `.zip` folder has the following structure:
* `0_data/`
* `1_code/`
* `2_output/`
* `lichen_detectability.Rproj`
* `README.txt`
* `workflow.html`
- `workflow.Rmd`

The main folder and the three subordinate folders each have their own `README*.txt` file. These describe each available file in detail and should be consulted prior to using the data or running any code. The file `lichen_detectability.Rproj` stores the information about the R project. The user can open the project by clicking/double-clicking on this file which will automatically define the repository as working directory for the R session. If the user does not use RStudio/Posit, they may have to set the working directory manually to the stored location in the R files. The files `workflow.*` guide the user through the analysis (`1_code/*.R`) in the correct order so that they can:
- bundle the cleaned data into a data list readable for JAGS
- fit the multi-species occupancy model to the data and store the output
- assess the goodness-of-fit of the model to the data
- conduct a prior sensitivity analysis with 2 additional sets of priors
- extract the summary statistics reported in the manuscript and supplementary materials
- generate the figures shown in the manuscript and supplementary materials

en: bayesian-inference biodiversity cryptogams detectability detection-probability inter-observer-difference lichens monitoring observer-error occupancy-model sessile-species swisslichens

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: EnviDat: the Environmental Data Portal

en: Repeated detection-nondetection data of corticolous lichens from a standardised monitoring across Switzerland

en: Repository containing the full data, code, README and workflow files.

bayesian-inference

display_name: bayesian-inference

biodiversity

display_name: biodiversity

cryptogams

display_name: cryptogams

detectability

display_name: detectability

detection-probability

display_name: detection-probability

inter-observer-difference

display_name: inter-observer-difference

lichens

display_name: lichens

monitoring

display_name: monitoring

observer-error

display_name: observer-error

occupancy-model

display_name: occupancy-model

sessile-species

display_name: sessile-species

swisslichens

display_name: swisslichens


en:
In the associated study [1], two time-lapse temperature gradient metamorphism series of three-dimensional micro-computed tomography images of snow (obtained by [2]) have been used to model the decrease of specific surface area (SSA) over time based on the pore-scale physics. We conducted finite element simulations of one-way coupled heat and mass diffusion in order to estimation the spatial pattern of water vapor deposition and sublimation, which controls the evolution of the SSA over time. We notably studied the influence of the condensation coefficient, a key but poorly constrained physical parameter.
This dataset provides the parameters used for the mesh generation and the finite element simulations. It also includes the ice fraction, specific surface area per unit volume and surface average of mean curvature and vapor field obtained as outputs from the mesh process and the simulations.
[1]: Braun, A., Fourteau, K., and Löwe, H.: A rigorous approach to the specific surface area evolution in snow during temperature gradient metamorphism, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2023-1947, 2023.
[2]: Pinzer, B. R., Schneebeli, M., and Kaempfer, T. U.: Vapor flux and recrystallization during dry snow metamorphism under a steady temperature gradient as observed by time-lapse micro-tomography, The Cryosphere, 6, 1141–1155, https://doi.org/10.5194/tc-6-1141-2012, 2012.

en: fem metamorphism microstructure snow time-series x-ray-tomography

envidat

approval_status: approved

fr: EnviDat est le portail de données du WSL; il offre un accès uniformisé et réglementé aux données de surveillance et de recherche en matière d’environnement. Ce portail est capable d’héberger et de publier des ensembles de données précieuses et uniques, qui sont partagées aux quatre coins de la planète. Ce faisant, EnviDat favorise la recherche et contribue à l’avancement des sciences environnementales.

de: EnviDat ist das Datenportal der WSL für einen einheitlichen und verwalteten Zugang zu Umweltdaten aus Monitoring- und Forschungsprojekten. Auf dem Portal können Datensätze gehostet und veröffentlicht werden. Durch die weltweite Bereitstellung einzigartiger und wertvoller Datensätze leistet EnviDat einen Beitrag zur Forschung im Bereich der Umweltwissenschaften.

it: EnviDat è il portale dati del WSL che fornisce un accesso unificato e gestito ai dati di monitoraggio ambientale e di ricerca. Il portale ha la capacità di ospitare e pubblicare serie di dati preziosi e unici che vengono condivisi in tutto il mondo. Così facendo, EnviDat promuove la ricerca e contribuisce al progresso della scienza ambientale.

de: EnviDat: das Umwelt-Datenportal

fr: EnviDat: le portail de données environnementales

it: EnviDat: il portale dei dati ambientali

political_level: other

state: active

type: organization

wsl

capacity: public

en: Simulation parameters and outputs for a rigorous approach to the specific surface area evolution in snow during temperature gradient metamorphism

type: dataset

key: guid

key: uri

value: Envidat Harvester

educ

de: Bildung, Kultur und Sport

en: Education, culture and sport

fr: Éducation, culture et sport

it: Istruzione, cultura e sport

en: Simulation parameters and outputs for "A rigorous approach to the specific surface area evolution in snow during temperature gradient metamorphism"

format: ODS

fem

display_name: fem

metamorphism

display_name: metamorphism

microstructure

display_name: microstructure

snow

display_name: snow

time-series

display_name: time-series

x-ray-tomography

display_name: x-ray-tomography


en:
The list gives the clearly identifiable plant species from Schinz (1775). Die Reise auf den Uetliberg. Verlag des Waysenhauses, Zürich). Several species given in Schinz (1775) are not identifiable to the species level and are not included in the list. Similarly, *Vicia pisiformis*, Erbsenartige Wicke, given by Schinz (1775) is probably a misidentification and also not included in the list.
Latin plant species name Schinz 1775: Latin plant name (if) given by Schinz (1775); na: not available
German plant species name Schinz 1775: German plant name given by Schinz (1775)
Latin plant species name Info Flora 2024: Latin plant name according to www.infoflora.ch in 2024
German plant species name Info Flora 2024: German plant name according to www.infoflora.ch in 2024
Plant species still occurring in 2020: Plant species given in Schinz (1775) still occurring at the Uetliberg in 2020 (Zürcherische Botanische Gesellschaft. 2020. Flora des Kanton Zürich. Haupt, Bern); occurrence of *Thesium alpinum*, Alpen-Bergflachs, according to floristic knowledge of Rolf Holderegger and Michèle Büttner; 1: still occurring; 0: no longer occurring / extinct.

en: flora-change occurrence plant-species uetliberg zurich

en: Plant species list from 1775 and 2020 for Uetliberg Zürich

en:
The list gives the clearly identifiable plant species from Schinz (1775). Die Reise auf den Uetliberg. Verlag des Waysenhauses, Zürich). Several species given in Schinz (1775) are not identifiable to the species level and are not included in the list. Similarly, Vicia pisiformis, Erbsenartige Wicke, given by Schinz (1775) is probably a misidentification and also not included in the list.

Latin plant species name Schinz 1775: Latin plant name (if) given by Schinz (1775); na: not available
German plant species name Schinz 1775: German plant name given by Schinz (1775)
Latin plant species name Info Flora 2024: Latin plant name according to www.infoflora.ch in 2024
German plant species name Info Flora 2024: German plant name according to www.infoflora.ch in 2024
Plant species still occurring in 2020: Plant species given in Schinz (1775) still occurring at the Uetliberg in 2020 (Zürcherische Botanische Gesellschaft. 2020. Flora des Kanton Zürich. Haupt, Bern); occurrence of Thesium alpinum, Alpen-Bergflachs, according to floristic knowledge of Rolf Holderegger and Michèle Büttner; 1: still occurring; 0: no longer occurring / extinct.

format: CSV

media_type: text/csv

flora-change

display_name: flora-change

occurrence

display_name: occurrence

plant-species

display_name: plant-species

uetliberg

display_name: uetliberg

zurich

display_name: zurich


en: Data on soil nutrients and charcteristics, tree and understory biomass, foliage nutrients, mineralogy, soil temperature and moisture along an elevation gradient from boreal forest to mountain tundra in teh Khibiny mountains (Kola Penninsula, Russia). Samples were taken along two gradients at 7 elevation level either under tree canopy (tree) and in open areas (open).

en: biomass-dynamics climate-change plant-community plant-traits soil-nutrients treeline-ecosystems

en: Data on soils, tree biomass, plant nutrients, rock mineralogy, climate of treeline ecosystems in Khibiny mountains, Kola Penninsula, Russia

format: XLS

biomass-dynamics

display_name: biomass-dynamics

climate-change

display_name: climate-change

plant-community

display_name: plant-community

plant-traits

display_name: plant-traits

soil-nutrients

display_name: soil-nutrients

treeline-ecosystems

display_name: treeline-ecosystems


en:
The Jorat is one of the largest continously forested areas in the Swiss Plateau. On a forested area of 778 ha, the Parc Naturel du Jorat (PNJ), a periurban parc, has been established in 2022. To document the initial state of the forest within the perimeter of the PNJ, a sample plot inventory (SPI) was carried out on 132 sample plots (SP) in winter 2021/22.
This dataset contains results from this sample plot inventory. It consists of the following files:
- results_trees.csv: Results for or living and dead trees.
- results_regeneration.csv: Results for trees with DBH < 7.0 cm, assessed in three height classes.
- results_lying_deadwood.csv: Results for lying deadwood, assessed no three line transects
- results_trems.csv: Results for occurence of tree related microhabitats (TreMs)
- results_habitat_trees.csv: Results for occurence / densities of trees carrying at least one TreM or with a DBH >= 80 for living trees or >= 36 cm for dead trees respectively.
- lookup.csv: Contains lookup tables which describe the respective results in-depth.
- data_description.pdf: Briefly describes the datasets mentioned above.

en: beech forest-in forest-reserves swiss-plateau temperate-forests

en: Sample plot inventory data form the Parc Naturel du Jorat

en:
The file results_trees.csv contains results of living, standing and lying and dead standing
trees as well as for stumps (trees found on the plot but broken / cut below 1.3 m).

en: Results trees

en: The file results_regeneration.csv contains results of the regeneration survey.

en: Results regeneration

en: The file results_lying_deadwood.csv contains results of the lying deadwood survey.

en: Results lying deadwood

en: The file results_habitat_trees.csv contains results for the number of habitat trees.

en: Results habitat trees

en: The file results_trems.csv contains results for the density of TreMs per ha.

en: Results TreMs

en: The file lookup.csv contains description for the values shown in the 5 result tables.

en: Lookup

en: This document briefly describes the datasets.

en: Data description

format: PDF

media_type: application/pdf

beech

display_name: beech

forest-in

display_name: forest-in

forest-reserves

display_name: forest-reserves

swiss-plateau

display_name: swiss-plateau

temperate-forests

display_name: temperate-forests


en: The dataset contains individual genotypes at 11 nuclear microsatellite markers of samples of Swiss stone pine (*Pinus cembra*). Samples were collected in 12 natural and presumably planted stands in the canton of Fribourg (Switzerland). The dataset is complemented by individual genotypes (same markers) from samples of a subset of 40 populations across the European Alps (taken from Gugerli et al., Journal of Biogeography 2023; https://doi.org/10.1111/jbi.14586; dataset archived at Dryad, https://doi.org/10.5061/dryad.866t1g1v6).

en: afforestation genetic-structure molecular-markers pinus-cembra reproductive-matieral

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: EnviDat: the Environmental Data Portal

en: Nuclear microsatellite genotypes of Pinus cembra

educ

en: Education, culture and sport

en: metadata and description of dataset

format: TXT

media_type: text/plain

afforestation

display_name: afforestation

genetic-structure

display_name: genetic-structure

molecular-markers

display_name: molecular-markers

pinus-cembra

display_name: pinus-cembra

reproductive-matieral

display_name: reproductive-matieral


en: This data set provides soil organic carbon, total nitrogen, and stable carbon isotope (13C) values of mineral soil (0-45cm), organic horizons (Oi, Oe, Oa), and root biomass of an afforestation sequence (0-130years) on a subalpine pasture in Jaun, Switzerland.

en: afforestation belowground-biomass isotopes picea-abies subalpine

en: Soil organic carbon stock of an afforestation sequence on a subalpine pasture

belowground-biomass

display_name: belowground-biomass

isotopes

display_name: isotopes

picea-abies

display_name: picea-abies

subalpine

display_name: subalpine


en:
Individual genotypes assessed at six nuclear microsatellite loci (two alleles per locus) for individuals of the butterfly Melanargia galathea (Marbled white) that were collected throughout Switzerland, along the regular grid of the Biodiversity Monitoring (BDM) of Switzerland. For each individual, the sampling site (number) and the genotype are given. Note that due to privacy restrictions, the original geographic coordinates remain disclosed. For original coordinates, data holders should be contacted (Swiss Federal Office for the Environment; Biodiversity Monitoring Switzerland).
The data refer to the following publication: Terzer et al., Distinct spatial patterns of genetic structure and diversity in the butterfly Marbled White (Melanargia galathea) inhabiting fragmented grasslands. Conservation Genetics, https://doi.org/0.1007/s10592-023-01593-4.

en: conservation-genetics genetic-diversity genetic-structure melanargia-galathea monitoring

en: Nuclear microsatellite genotypes of the butterfly Melanargia galathea

conservation-genetics

display_name: conservation-genetics

genetic-diversity

display_name: genetic-diversity

melanargia-galathea

display_name: melanargia-galathea

monitoring

display_name: monitoring


en: Raw data on plant morphological traits, phytochemistry and herbivory that were analyzed in the study entitled: Artificial night light intensity modulates herbivory and phytochemistry in European beech

en: alan european-beech insect-herbivores light-pollution phytochemistry

en: Raw data - Artificial night light intensity modulates herbivory and phytochemistry in European beech

en: Raw data for the Publication Ceppi et al. 2025 in Journal of Applied Ecology: ARTIFICAL NIGHT LIGHT INTENSITY MODULATES HERBIVORY AND PHYTOCHEMISTRY IN EUROPEAN BEECH

en: Raw_data_Ceppi et al..xlsx

alan

display_name: alan

european-beech

display_name: european-beech

insect-herbivores

display_name: insect-herbivores

light-pollution

display_name: light-pollution

phytochemistry

display_name: phytochemistry


en: This data is related to the publication "Non-native Douglas fir seedlings outcompete native Norway spruce, silver fir and Scots pine under dry and nutrient-poor conditions". It contains growth and biomass data on Douglas fir seedlings in competition with three native conifers and four native broadleaf trees over three years und varying environmental conditions (i.e., water, nutrients and light availabilities).

en: climate-change douglas-fir drought european-beech norway-spruce

en: Data on Douglas fir seedlings from the DOCH-WO experiment

en: This file contains the growth data of the 8 plant species used in the Doch-WO experiment.

climate-change

display_name: climate-change

douglas-fir

display_name: douglas-fir

drought

display_name: drought

norway-spruce

display_name: norway-spruce


en: These data were used to drive and evaluate Jules Investigation Model (JIM) snow simulations. The data provided are the forcing data used for the "deterministic" runs as described in Winstral et al., 2019. The bias-detecting ensemble (Winstral et al., 2019) used observed snow depths (HS) to detect biases in these deterministic simulations related to precipitation and energy inputs to JIM. Simulations that included the BDE evaluations substantially improved JIM simulations.

en: jim jules-investigation-model snow snow-depth snow-simulation

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: EnviDat: the Environmental Data Portal

en: Meteorological data used to develop and validate the bias-detecting ensemble (BDE)

educ

en: Education, culture and sport

en: 1-km resolution DEM used for downscaling gridded NWP data to stations and for distributing BDE evaluations at HS-stations to SWE-stations

en: DEM

en: File/data descriptor

en: All forcing data need to run JIM at HS and SWE stations. These are data downscaled directly from COSMO NWP data (WY14, WY15) and further enhanced by additional station observations of snow depth (HS) and air temperature (Ta) in WY17. Further information can be found in README file. Note that in WY14 and WY15, shortwave radiation was not split into direct and diffuse (not necessary for JIM) and that the default method in JIM for splitting precipitation phase was used. In WY 17, direct and diffuse were combined as input to JIM and JIM was forced with pre-processed liquid and solid precipitation phases.

en: Station forcing data

format: ZIP

media_type: application/zip

en: Automated (HS) and manual (SWE) data used to evaluate model simulations

en: HS and SWE observations

jim

display_name: jim

jules-investigation-model

display_name: jules-investigation-model

snow

display_name: snow

snow-depth

display_name: snow-depth

snow-simulation

display_name: snow-simulation


en:
This data set includes 56 years of hydrometeorological measurements from small (first-order) catchments in the pre-alpine valley Alptal. Here we provide daily mean values; values in hourly or 10-min resolution can be provided on demand.
Runoff has been measured at the outlet of three small (first-order) catchments of approximately 1 km2 area: Erlenbach (two independent runoff measurements), Vogelbach and Lümpenenbach. The catchments are similar with regard to geology (Flysch) and soil conditions (clay soils), but differ in forest coverage (20 to 60%). A detailed description of the catchments can be found at https://www.wsl.ch/alptal .
Runoff in these small catchments is typically very dynamic and can temporally carry large amounts of sediment and large wood. Thus, the accuracy of the measurements at very large flow is limited.
Meteorological variables have been measured on a meadow (Erlenhöhe) located in the Erlenbach catchment at 1220 m a.s.l. using a standard meteorological station (incl. ventilated air temperature and heated rain gauges). In addition, precipitation has also been recorded at two other locations (in the Vogelbach and Lümpenenbach catchments).
Snow measurements have been conducted weekly to monthly since 1968 at more than 15 locations (30-m transects) representing different altitudes, aspects and land uses (meadow, forest). In addition, snow depth has been recorded continuously since 2003 at Erlenhöhe, and for this location we also include a simulation of snow depth and SWE (using the numerical models COUP and DeltaSnow) that assimilates the manual weekly snow-course measurements. Details on these snow measurements can be found in Stähli, M. and Gustafsson, D. 2006. Hydrol. Proc., 20, 411-428. doi: 10.1002/hyp.6058.
Further information on the methods and sensors can be found at https://www.wsl.ch/alptal .
A first version of this data set (for the period 1968-2017) was uploaded in June 2018 at the occasion of the 50-year anniversary. This original data set was updated in February 2021 (with data from 2018 and 2019), and this data set was used for a longterm trend analysis, submitted for publication in a special issue of Hydrological Processes. Further updates of the data set (with data from 2020 to 2022) were uploaded in March 2023, February 2024 and March 2025.

en: alptal first-order-catchment meteorological-data runoff snow subalpine

en: Longterm hydrological observatory Alptal (central Switzerland)

en:
Air temperature, dew point temperature, relative humidity, wind speed, precipitation and global radiation have been measured (since 1981) on a meadow (Erlenhöhe) in the Erlenbach catchment. It is located at 1'220 m a.s.l. with an exposure towards west. In order to assess the spatial variability of precipiation, two additional rain gauges have been running in the Vogelbach and Lümpenenbach catchment, respectively.
For the period before 1981, meteorological variables have been extrapolated from the nearby MeteoSwiss station Einsiedeln (ca. 15 km north) to the WSL station Erlenhöhe using a linear correction factor for air temperature, wind speed and precipitation.
Snow depth has been recorded automatically since 2003. Snow water equivalent has been calculated using two numerical models: COUP model (Jansson, 2012) and DeltaSnow model (Winkler et al., 2021)

Jansson, P.-E. (2012). COUP model: model use, calibration, and validation.Transactions of the ASABE, 55(4), 1335–1344.
Winkler, M., et al. (2021): Snow water equivalents exclusively from snow depths and their temporal changes: the Δsnow model, Hydrol. Earth Syst. Sci., 25, 1165-1187, 10.5194/hess-25-1165-861 2021.

en: Daily meteorological and snow data (1968-2022) Alptal

en: Runoff, water temperature and electrical conductivity have been measured since 1968 at the outlet of three torrential catchments (with an area of approximately 1 km2 each) located in the Alptal valley: Erlenbach, Lümpenenbach and Vogelbach. This data set provides daily mean values; data at 10-min resolution can be provided on request for the period 1984-2022 (contact: alptal@wsl.ch).

en: Daily runoff data from three steep torrents in the Alptal (1968-2022)

en:
Snow depth, snow density and snow water equivalent have been measured since winter 1968/69 along more than 15 transects distributed across the Alptal valley representing different altitudes, aspects and land use (closed forest and open meadows). Length of the snow courses: 20 to 30 m. The measurement interval has been weekly to monthly.
More details about the locations and methods can be found in Stähli, M.; Gustafsson, D., (2006). Long-term investigations of the snow cover in a subalpine semi-forested catchment. Hydrological Processes, 20, 411-428. doi: 10.1002/hyp.6058.

en: Manual snow measurements Alptal (1968-2022)

en: Runoff, water temperature and electrical conductivity have been measured since 1968 at the outlet of three torrential catchments (with an area of approximately 1 km2 each) located in the Alptal valley: Erlenbach, Lümpenenbach and Vogelbach. This data set provides daily mean values; data at 10-min resolution can be provided on request for the period 1984-2024 (contact: alptal@wsl.ch).

en: Runoff daily mean Alptal 1968-2024 EnviDat updated

en:
Air temperature, dew point temperature, relative humidity, wind speed, precipitation and global radiation have been measured (since 1981) on a meadow (Erlenhöhe) in the Erlenbach catchment. It is located at 1'220 m a.s.l. with an exposure towards west. In order to assess the spatial variability of precipitation, two additional rain gauges have been running in the Vogelbach and Lümpenenbach catchment, respectively. For the period before 1981, meteorological variables have been extrapolated from the nearby MeteoSwiss station Einsiedeln (ca. 15 km north) to the WSL station Erlenhöhe using a linear correction factor for air temperature, wind speed and precipitation. Snow depth has been recorded automatically since 2003. Snow water equivalent has been calculated using two numerical models: COUP model (Jansson, 2012) and DeltaSnow model (Winkler et al., 2021)
Jansson, P.-E. (2012). COUP model: model use, calibration, and validation.Transactions of the ASABE, 55(4), 1335–1344. Winkler, M., et al. (2021): Snow water equivalents exclusively from snow depths and their temporal changes: the Δsnow model, Hydrol. Earth Syst. Sci., 25, 1165-1187, 10.5194/hess-25-1165-861 2021.

en: Meteorological data Alptal 1968-2024 EnviDat updated

en: Snow measurements Alptal 1969-2024 EnviDat updated

alptal

display_name: alptal

first-order-catchment

display_name: first-order-catchment

meteorological-data

display_name: meteorological-data

runoff

display_name: runoff

subalpine

display_name: subalpine


en:
This dataset consists of spatio-temporal soil measurements and local snow measurements which were recorded to investigate glide-snow avalanche release in the Seewer Berg slope (Davos, Switzerland) from Nov 2021 to June 2024. Investigations based on this dataset were published in the research article:
Fees A., Lombardo M., van Herwijnen A., Lehmann P., Schweizer J. (2025). The source, quantity, and spatial distribution of interfacial water during glide-snow avalanche release: experimental evidence from field monitoring. The Cryosphere
The dataset consists of:
- Soil measurements (temperature and liquid water content) at soil depths of -5cm, -10cm, and -20cm
- Matric potential at depths of -5cm, -10cm, and -20cm
- Manual snow profiles (Snow height, temperature, liquid water content, bulk density)
- Metadata and manual snow profiles on glide-snow avalanches that released in the Seewer Berg slope
- Snow height, air temperature and rain simulated with SNOWPACK.

en: avalanche avalanche-activity glide-snow-avalanche snow-profile soil-moisture

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: EnviDat: the Environmental Data Portal

en: Spatio-temporal soil and local snow monitoring in a glide-snow avalanche prone slope above Davos Switzerland

educ

en: Education, culture and sport

en: This file contains the daily avalanche activity on Dorfberg as extracted from time-lapse photographs.

en: This file contains the release areas (polygon) of glide-snow avalanches as a shapefile.

en: This file contains the coordinates of the reference location and the sensors in the Seewer Berg slope as a shapefile.

en: This file contains all sensor recordings in the Seewer Berg slope (time interval: 15 minutes).

en: This file explains all provided datasets, variables and their units.

en: This file contains all soil measruements (liquid water content and matric potential) recorded at the reference location.

en: This file provides an overview of the dataset, the detailed measurement setup, and points out limitations.

en: This file contains the aggregated data from manually recorded snow profiles in the reference location, 100m northwest of the Seewer Berg slope and in release areas of glide-snow avalanches in the Seewer Berg slope.

en: This file contains SNOWPACK simulations (snow height, air temperature, rain) at a virtual station in the reference location. The virtual station was interpolated between the Weissfluhjoch (WFJ2) and Klosters Madrisa (KLO2) IMIS Stations.

avalanche

display_name: avalanche

avalanche-activity

display_name: avalanche-activity

glide-snow-avalanche

display_name: glide-snow-avalanche

snow-profile

display_name: snow-profile

soil-moisture

display_name: soil-moisture


en:
*Currently, this dataset is intended solely for article review purposes and may not be used for any other purposes.*
This dataset consists of a series of full snow profiles collected at the field site of Weissfluhjoch, Davos, Switzerland over the two snow seasons of 2022-2023 and 2023-2024. This series of snow profiles was collected with a high vertical and temporal resolution, with a specific focus on the melting seasons, during which up to 3 snow profiles per week were sampled. This dataset is part of the measurement campaign carried out within the SnowTinel project, whose aim is to explore the Sentinel-1 SAR backscattering response to melting Alpine snowpacks. Therefore, this dataset contains manual measurements of the main properties of snow which are responsible for scattering, i.e. temperature, density, specific surface area (SSA), liquid water content (LWC), surface roughness and snow water equivalent (SWE).
The dataset is composed of a total of 85 snow profiles, 38 carried out in 2022-2023 and 47 in 2023-2024.
 - Profiles of snow **temperature** were sampled at a vertical resolution of 10 cm (2022-2023) and 5 cm (2023-2024) using HI98501 Checktemp from Hanna Instruments;
  - Profiles of snow **density** were sampled at a vertical resolution of 3 cm using a box density cutter and a digital scale;
  - Profiles of snow **specific surface area** were sampled at a vertical resolution of 4 cm using the InfraSnow sensor from FPGA;
  - Profiles of snow **liquid water content** were sampled at a vertical resolution of 2 cm using the Denothmeter (2022-2023) and the New Capacitive Sensor from FPGA (2023-2024). In conditions of ripe snow, dielectric measurements were backed up by melting calorimetry measurements following a recently revised field protocol;
  - Snow **surface roughness** is expressed by the Root Mean Square of the Heights (RMSH) and the correlation length (CL), both computed from a digitized snow transect obtained by a digital photograph of a panel vertically inserted into the snow.
- **Snow water equivalent** was sampled in sections from the surface to the bottom of the snowpack with a cylinder cutter.

Additionally, **runoff** was automatically measured in the close proximity to the measurement field at a sub-hourly resolution by a lysimeter. The instrument was unfortunately discovered to be clogged at the start of the runoff in 2023 and only repaired in late May 2023. Therefore, the time series is not explanatory for the runoff start in 2023. The instrument was inspected timely and assessed as fully functional for the following snow season. The manually measured values of **SWE** are complemented by an automatically recorded time series at sub-hourly time intervals with a SSG1000 snow scale manufactured by Sommer Messtechnik, Austria.

 ---

- References:
 - HI98501 Checktemp: [https://www.hannainstruments.co.uk/modules/teapotknowledgehub/uploads/ist98501_06_18-60d496ca2cd31.pdf](https://www.hannainstruments.co.uk/modules/teapotknowledgehub/uploads/ist98501_06_18-60d496ca2cd31.pdf)
 - InfraSnow sensor: Wolfsperger, Fabian & Ziegler, Silvio & Schneebeli, Martin & Löwe, Henning. (2022). Evaluation of the InfraSnow: a handheld device to measure snow specific surface (SSA). 10.13140/RG.2.2.31566.95047; [https://snow-sen.com/infrasnow-ssa-sensor-2/](https://snow-sen.com/infrasnow-ssa-sensor-2/)
 - Denothmeter: Denoth, A. “An Electronic Device for Long-Term Snow Wetness Recording.” Annals of Glaciology 19 (1994): 104–6. [https://doi.org/10.3189/S0260305500011058](https://doi.org/10.3189/S0260305500011058)
 - New Capacitive Sensor: Wolfsperger, Fabian & Geisser, Michel & Ziegler, Silvio & Löwe, Henning. (2023). A NEW HANDHELD CAPACITIVE SENSOR TO MEASURE SNOW DENSITY AND LIQUID WATER CONTENT; [https://snow-sen.com/slf-snowpro-40/](https://snow-sen.com/slf-snowpro-40/)
 - Melting calorimetry: Barella, R., Bavay, M., Carletti, F., Ciapponi, N., Premier, V., and Marin, C.: Unlocking the potential of melting calorimetry: a field protocol for liquid water content measurement in snow, The Cryosphere, 18, 5323–5345, [https://doi.org/10.5194/tc-18-5323-2024](https://doi.org/10.5194/tc-18-5323-2024), 2024.
 - Surface roughness: B. Riccardo, C. Marin, M. Callegari, M. Gianinetto, T. Moranduzzo and C. Notarnicola, "A Low-Cost Portable Automatic System for Snow Surface Roughness Measurements Based on Digital Photography," 2021 IEEE International Geoscience and Remote Sensing Symposium IGARSS, Brussels, Belgium, 2021, pp. 5562-5565, doi: [https://doi.org/10.1109/IGARSS47720.2021.9553989](https://doi.org/10.1109/IGARSS47720.2021.9553989).
 - SSG: [https://www.sommer.at/de/produkte/schnee-eis/schneewaage-ssg-2](https://www.sommer.at/de/produkte/schnee-eis/schneewaage-ssg-2)

en: radar satellite sentinel-1 snow-density snow-lwc snow-melt snow-profiles snow-roughness snow-ssa snow-temperature surface-roughness wet-snow

en: SnowTinel high-temporal-resolution ground truth dataset for SAR remote sensing of snow

en: General metadata and detailed data description.

en: Runoff time series automatically recorded from the lysimeter (2022-2024).

format: OCTET

en: Snow water equivalent time series automatically recorded from the snow scale (2022-2024).

en: Manually measured time series of surface roughness (2022-2023).

en: Manually measured time series of surface roughness (2023-2024).

en: Manually measured time series of snow water equivalent (2022-2023).

en: Manually measured time series of snow water equivalent (2023-2024).

en: Snow profiles collected on the snow season 2022-2023.

en: Snow profiles collected on the snow season 2023-2024.

radar

display_name: radar

satellite

display_name: satellite

snow-density

display_name: snow-density

snow-lwc

display_name: snow-lwc

snow-melt

display_name: snow-melt

snow-profiles

display_name: snow-profiles

snow-roughness

display_name: snow-roughness

snow-ssa

display_name: snow-ssa

snow-temperature

display_name: snow-temperature

surface-roughness

display_name: surface-roughness

wet-snow

display_name: wet-snow


data-analysis-toolkits

en:
These are condensed notes covering selected key points in data analysis and statistics. They were developed by James Kirchner for the course "Analysis of Environmental Data" at Berkeley in the 1990's and 2000's. They are not intended to be comprehensive, and thus are not a substitute for a good textbook or a good education!

License: These notes are released by James Kirchner under a Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) license.

en: bayesian-inference data-analysis error-propagation hypothesis-testing statistics uncertainty

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: EnviDat: the Environmental Data Portal

en: Data analysis toolkits

title_for_slug: data-analysis-toolkits

educ

en: Education, culture and sport

en: Toolkit 1: graphically displaying data distributions

en: Toolkit 2: quantifying data distributions using descriptive statistics

en: The ladder of powers and a few other cool transformations

en: Toolkit 3: tools for transforming data

en: Toolkit 4: confidence intervals

en: Gaussian error propagation, monte carlo methods, and first-order, second-moment error propagation

en: Toolkit 5: uncertainty analysis and error propagation

en: The average of a nonlinear function will not equal the function evaluated at its average inputs (the mean of the function will differ from from the function of the mean). This toolkit shows how to estimate that averaging bias.

en: toolkit 6: averaging in nonlinear functions

en: An overview of basic concepts -- and common pitfalls -- in statistical hypothesis testing, statistical significance, and power analysis

en: Toolkit 7: hypothesis testing, significance, and power

en: A quick introduction to Hodges-Lehmann estimators (nonparametric measures of effect size)

en: Toolkit 8: Hodges-Lehmann estimators

en: Statistical fishing expeditions, and how to avoid being misled by them

en: Toolkit 9: Experimentwise error rates and statistical fishing expeditions

format: SERVICE

en: An overview of the math, logic, and pitfalls of ordinary least-squares linear regression

en: Toolkit 10: linear regression

en: Tools for detecting and correcting for serial correlation in analyses of time series

en: Toolkit 11: serial correlation

en: There are two different ways to calculate the uncertainty of a weighted average. Software packages often don't tell you which one they are reporting, and the resulting errors can be huge.

en: Toolkit 12: weighted averages and their uncertainties

bayesian-inference

display_name: bayesian-inference

data-analysis

display_name: data-analysis

error-propagation

display_name: error-propagation

hypothesis-testing

display_name: hypothesis-testing

statistics

display_name: statistics

uncertainty

display_name: uncertainty


en: Although much of the endemic biodiversity of Madagascar can be attributed to its isolation as an island in the Indian Ocean, the high rates of speciation throughout its geologic history suggest an influence of local-scale landscape dynamics. The topographic evolution of Madagascar is dominated by the formation of high-relief continental rift escarpment and we argue that the erosion and landward retreat of this topography creates habitat heterogeneity that has served as a speciation pump for the island. The highest plant richness is found along the escarpment and is characterized by steady diversification rates over the last 45 Ma. Modeled landscape evolution by escarpment retreat demonstrates opportunities for allopatric speciation by transient habitat fragmentation through multiple mechanisms, including catchment expansion, isolation of highland remnants and formation of topographic and river barriers The segregation of floral phylogenetic turnover parallel to the escarpment is consistent with these mechanisms and indicates the importance of erosion-driven landscape dynamics on speciation.

en: endemism flora geology landscape-evolution madagascar

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: EnviDat: the Environmental Data Portal

en: Escarpment evolution drives the diversification of the Madagascar flora

educ

en: Education, culture and sport

en: Data v1.0

en: This upload contains the data (species checklist, species range maps, time-calibrated phylogenies, topographic change, etc.) generated, analyzed, and presented in the paper .

endemism

display_name: endemism

flora

display_name: flora

geology

display_name: geology

landscape-evolution

display_name: landscape-evolution

madagascar

display_name: madagascar


en:
This dataset contains all data, on which the following publication below is based.

Paper Citation:

_Schlierenzauer, C., Risch, A.C., Schütz, M., Firn, J. 2021. Non-native Eragrostis curvula reduces plant species diversity in pastures of South-eastern Australia even when native Themeda triandra remains co-dominant. Plants 10, 596._

Please cite this paper together with the citation for the datafile.

Study area
The study was conducted in the lowland grassy woodlands of the Bega Valley Region, which is located in the south-east corner of New South Wales, Australia. Embedded between the Pacific Ocean and the Australian Alps, the lowland grassy woodlands are mostly located on granitic substrates and reach elevations of roughly 500 m above sea level. Typically, these grassy woodlands receive less precipitation (mean annual precipitation between 700-1100 mm) compared to the more elevated areas that surround them (NSW Government - Office of Environment and Heritage 2017).
The vegetation is dominated by an open tree canopy layer consisting of Eucalyptus tereticornis Sm, Angophora floribunda Sm. (Sweet) and a range of other eucalypt species. Sometimes shrub or small trees are also present, whereas grasses and forbs form the ground-cover. In areas without intensive agricultural history, this layer is dominated by perennial, tussock grasses such as Themeda triandra Forssk, Microlaena stipoides R.Br (Weeping Grass), Eragrostis leptostachya Steud. (Paddock Lovegrass) and Echinopogon ovatus P.Beauv (Forest Hedgehog Grass). The remaining inter-tussock spaces are occupied by a diversity of growth-restricted grasses and herbaceous forbs (NSW - Department of Planing, Industries and Environment 2019; NSW Government - Office of Environment and Heritage 2017).
Clearing, pasture sowing, fertilizer application and livestock grazing resulted in a dramatic decrease in the extent of these natural woodlands, with less than five percent within conservation reserves and overall, with only about 20% of their original extent in New South Wales still existing (Tozer et al. 2010). The remaining areas outside of reserves are threatened by altered fire frequencies, habitat clearing, livestock grazing and especially by non-native plant invasion, particularly Eragrostis curvula (Schrad.) Nees. For this reason, the grassy woodlands are listed as an endangered ecological community in the NSW state legislation. Additionally, they are considered as critically endangered by the Commonwealth of Australia (Threatened Species Scientific Committee (TSSC) 2013).

Experimental design and sampling
The study was conducted on six farms and in each of them two sites were chosen, representing a paired design. One of the sites at each farm is dominated by native Themeda triandra, the other one co-dominated by non-native Eragrostis curvula and Themeda triandra. All farms are within a radius of approximately 10 km from the town Candelo. Three of the farms are located North (36°40’ to 36°42’ S and 149°38’ to 149°42’ E) and three of them are located South (36°51’ to 36°49’ S and 149°38’ to 149°42’ E) of Candelo.
Non-native herbivores (mainly cattle, sheep and rabbits) and native herbivorous marsupials (mainly kangaroos, wallabies and wombats) are present in the area of these sites. On each site, data was collected within four plots (each 1 x 1 m) in May and November 2020. All plant species found within a plot were recorded and their relative abundance was estimated.

References
NSW - Department of Planing, Industries and Environment. 2019. “Lowland Grassy Woodland in the South East Corner Bioregion - Endangered Ecological Community Listing.” https://www.environment.nsw.gov.au/topics/animals-and-plants/threatened-species/nsw-threatened-species-scientific-committee/determinations/final-determinations/2004-2007/lowland-grassy-woodland-south-east-corner-bioregion-endangered-ecological-community-l (February 18, 2021).
NSW Government - Office of Environment and Heritage. 2017. “Lowland Grassy Woodland in the South East Corner Bioregion - Profile.” https://www.environment.nsw.gov.au/threatenedSpeciesApp/profile.aspx?id=20070 (January 31, 2021).
Threatened Species Scientific Committee (TSSC). 2013. Environment Protection and Biodiversity Conservation Act 1999 (EPBC Act) Conservation Advice for Lowland Grassy Woodland in the South East Corner Bioregion. http://www.environment.gov.au/biodiversity/threatened/communities/pubs/82-conservation-advice.pdf.
Tozer, Mark et al. 2010. “Native Vegetation of Southeast NSW: A Revised Classification and Map for the Coast and Eastern Tablelands.” Cunninghamia : a journal of plant ecology for eastern Australia 11(3): 359–406.

en: grassland herbivory native-plant non-native-plant weed-management

en: Native and no-native plant interactions in Australian grasslands

en:
taxa tab:	list and overview of all the recorded species

* family:                 family of the plant

* genus:                genus of the plant

* species:                plant species name

* origin:                indicates whether the plant is native to Australia or not (non-native)

* common name:	        common name of the plant species

* functional group:	        functional group of the plant species: forb, graminoid, fern, tree

* functional group detailed:	gives more detail about the type of graminoid and forb: legume, forb (non-leguminous),
                        grass, sedge, rush, fern, tree

* lifeform:                annual or perennial lifeform (species which can have both of these lifeforms where
                        considered as annuals)

plot tab:	list of species found in each plot and their cover (%)

* sampling.session:        provides information about the sampling time:
                        May2020 = data that was collected in May 2020
                        Nov2020 = data that was collected in November 2020

* farm.name:	            name of the farms where the sampling took place:
                        SF = farm of the Southern group
                        NF = farm of the Northern group
                        numbers 1-3 = randomly allocated to the Southern group of farms
                        numbers 4-6 = randomly allocated to the Northern group of farms

* site.type:	                KG: Kangaroo grass dominated site
                        ALG: ALG+KG site (Kangarooo grass and African lovegrass co-dominated site)

* plot.no:                plot number: 9-12

* scientific.name:	        scientific name of the plant species found in a certain plot

* functional group:	        indicates whether the species found is a tree, forb, graminoid or fern

* functional group detailed:	indicates whether the species found is a tree, legume, forb (non-leguminous),
                        grass, sedge, rush, fern

* lifeform:                specifies the lifeform of the species: annual or perennial lifeform
                        (species which can have both of these lifeforms where considered as annuals)

en: Data file native and non-native plant interactions in Australian grasslands

grassland

display_name: grassland

herbivory

display_name: herbivory

native-plant

display_name: native-plant

non-native-plant

display_name: non-native-plant

weed-management

display_name: weed-management


swiss-fluxnet-site-lageren

en:
The Swiss FluxNet Site Lägeren is a managed mixed deciduous mountain forest located on the steep Lägeren mountain (NW of Zurich, Swiss Plateau). The forest is highly diverse, dominated by beech, but also including ash, maple, spruce and fir trees. Eddy covariance flux measurements were started in April 2004. The site was part of the international CarboEurope IP network and the National Air Pollution Monitoring Network (NABEL). In addition to Swiss FluxNet, the site is part of the Long-term Forest Ecosystem Research (LWF) of WSL and the biological drought and growth indicator network (TreeNet) of WSL.

Measurements

- Ecosystem flux measurements of CO2, H2O vapour are performed with the eddy-covariance method. This method is based on measurements of trace gas mixing ratios, using infrared gas analyzers (for CO2, H2O vapor), combined with wind speed and wind direction measurements, using 3D sonic anemometers. To resolve the short-term turbulent fluctuations in the atmosphere, very fast measurements are needed: we measure at 10-20 Hz, i.e., 10-20 times per second. To assess the energy budget of each ecosystem, also radiation sensors and soil climate profiles are installed at the site.
- Sub-canopy eddy fluxes (CO2, H2O), soil respiration campaigns
- Continuous CO2 profile measurements.
- Auxiliary micrometeorology and soil climate measurements.

Data availability

All data are available from the European Fluxes Database Cluster, but are also part of Fluxnet2015 dataset.

Data policy

ICOS data license:
[https://www.icos-cp.eu/data-services/about-data-portal/data-license](https://www.icos-cp.eu/data-services/about-data-portal/data-license)

Detailed site info:
[https://www.swissfluxnet.ethz.ch/index.php/sites/ch-lae-laegeren/site-info-ch-lae//](https://www.swissfluxnet.ethz.ch/index.php/sites/ch-lae-laegeren/site-info-ch-lae/)

en: eddy-covariance flux forest greenhouse-gas meteorological-measurements swiss-fluxnet swiss-forest-lab

en: Swiss FluxNet Site Lägeren

title_for_slug: swiss-fluxnet-site-lageren

en: Site description

en: The flux and meteo data of the Swiss FluxNet site Lägeren are openly available from the European Fluxes Database Cluster.

en: Data access

format: HTML

media_type: text/html

eddy-covariance

display_name: eddy-covariance

flux

display_name: flux

forest

display_name: forest

greenhouse-gas

display_name: greenhouse-gas

meteorological-measurements

display_name: meteorological-measurements

swiss-fluxnet

display_name: swiss-fluxnet

swiss-forest-lab

display_name: swiss-forest-lab


greenland-climate-network-gc-net-data

en:
In Memory of Dr. Konrad (Koni) Steffen

Update October 2022: The GC-Net is kindly continued by the Geological Survey of Denmark and Greenland (GEUS).
Starting October 3, 2022, the access to the latest versions of the "ready to use" L1 data has been migrated to GEUS. Future data versions will be available at: [https://doi.org/10.22008/FK2/VVXGUT](https://doi.org/10.22008/FK2/VVXGUT)
 Background
Starting with a single station in 1991, the Greenland Climate Network (commonly known as GC-Net) is a set of Automatic Weather Stations (AWS) set up and managed by the late Prof. Dr. Konrad (Koni) Steffen, and spanning the Greenland Ice Sheet (GrIS). This first station was "Swiss Camp" or the "ETH-CU" camp (GC-Net station 01) which was used as a field science and education site by Koni for years. The GC-Net was expanded with multiple NASA, NOAA, and NSF grants throughout the years, and then supported by WSL in the later years. These data (see "C-file" below) were previously hosted by the Cooperative Institute for Research in Environmental Sciences (CIRES) in Boulder, Colorado.

 Overview
Provided in this dataset are the 16 longest running stations in the network, which are spread over a significant area of the GrIS and the majority of the unique climatic zones. From the South Dome high point in the South, to the Western Jakobshavn ablation region in the west, to the Petermann glacier in the North across east of the Northeast Greenland Ice Stream to the east, GC-Net is the longest running climatological record of Greenland.

 The standard GC-Net station consists of:
* Air temperature measurements at 2 heights above the surface
* Temperature and humidity measurements at 2 heights above the surface
* Wind speed and direction measured at 2 heights above the surface
* Sonic distance sounder measurements for 2 snow height and distance of instruments to surface
* Incoming shortwave radiation measurement
* Reflected shortwave radiation measurement
* Net broadband radiation (long- and short-wave) measurement
* Air pressure measurement
Data have often been repatriated in near-real time using one of either the GOES geostationary satellite or the ARGOS polar orbiting satellite transmission system. The stations were visited typically every 1-2 years for maintenance and service, and to download full uncorrupted data directly from the dataloggers. GC-Net stations were visited by Twin Otter equipped with snow skids to land directly on the open-ice at the AWS locations, or by helicopter near the west coast. The AWSs operate on solar and battery power and occasionally lost power during the dark and cold winter months, particularly when the batteries were aging.

 Dataset
This dataset consists of 2 main data levels; Level 0 and Level 1.
Level 0 is the raw data from the dataloggers, historical processing codes, satellite transmissions, and Koni’s personal data archive. Level 0 data (.zip) directories contain subdirectories:
* “C file” - contains the historical processed datafile for each station.
* “Campbell logger files” - contains the raw csv datafiles from the stations’ Campbell Scientific dataloggers since the CR1000 era (~2007-2008 for most stations).
* “Photos” - contains photographs of the station when available marked by year.
Level 1 is the appended, calibrated, cleaned, and quality flagged data. The full processing scheme is open-source and publicly available on the following GitHub repository (please also check GitHub for the latest L1 data):
[GC-Net L1 data on GitHub](https://github.com/GEUS-Glaciology-and-Climate/GC-Net-level-1-data-processing "GC-Net-level-1-data-processing")
Level 1 data is provided in the newly described csv-compatible [NEAD format](https://www.envidat.ch/#/metadata/nead "NEAD format").

 Additional Details
Dataset description publication will be forthcoming.
The Geological Survey of Denmark and Greenland (GEUS) has been imperative in the reprocessing and continuity mission of GC-Net. Multiple GC-Net stations have been replaced with updated and upgraded AWS hardware at the same coordinates by GEUS. This effort will ensure continuity of the GC-Net dataset into the future.

en: air-temperature automatic-weather-station aws climate greenland net-radiation

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: Greenland Climate Network (GC-Net) Data

title_for_slug: greenland-climate-network-gc-net-data

en:
The GC-Net is kindly continued by the Geological Survey of Denmark and Greenland (GEUS).

Starting October 3, 2022, the access to the latest versions of the "ready to use" L1 data has been migrated to GEUS, (doi:10.22008/FK2/VVXGUT). Future versions will be available from GEUS, while the initial version of L1 data has been archived.

en: Access the latest L1 data

en:
The GC-Net is kindly continued by the Geological Survey of Denmark and Greenland (GEUS).

Starting October 3, 2022, the access to the latest versions of the "ready to use" L1 data has been migrated to GEUS, (doi:10.22008/FK2/VVXGUT). Future versions will be available from GEUS, while the initial versions of L0 and L1 data have been archived.

en: Archived GC-Net Data (deprecated)

en: 22-Petermann ELA

en: Stations Config from the static bucket

en: GC Net Config for Stations

format: JSON

media_type: application/json

en: Stations parameters from static bucket

en: GC Net Chart Parameters

air-temperature

display_name: air-temperature

automatic-weather-station

display_name: automatic-weather-station

aws

display_name: aws

climate

display_name: climate

greenland

display_name: greenland

net-radiation

display_name: net-radiation


en: In the context of landslide early warning research, soil moisture (e.g. volumetric soil water content and soil water potential) has been measured at six locations in the Napf-region (Emmental, central Switzerland) since April 2019. Here, we provide the hourly mean values of all sensors from all 6 locations after a comprehensive data control, filtering and aggregation (from 10-min to 1-hour values). A sub-set of these data (for the locations Wasen i.E.) has previously been published in envidat.ch at https://www.doi.org/10.16904/envidat.369 applying the same data post-processing method. The dataset is complemented with meteorological data (locally measured air temperature and precipitation) as well as soil temperature. A detailed description of the sites and measurement installations can be found in a separate report (attached with the data).

en: landslide-early-warning soil-moisture soil-temperature soil-water-content soil-water-matrix-potential

envidat

en: EnviDat: the Environmental Data Portal

en: In-situ soil moisture measurements Napf-region

educ

en: Education, culture and sport

en: Detailed description of soil moisture measurment sites, soil properties and sensor installations (in German)

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, and two additional soil temperature measurements (oC), air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: since April 2019.
Location: steep hillslope, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Wasen i.E., steep slope, since 2019

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, and two additional soil temperature measurements (oC), air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: since April 2019.
Location: flat terrain, meadow
For a detailed description of site, soil and vegetation: see attached document.
Updates 2025:
The “precipitation” column was set to not available (NA) for periods when the pluviometer was identified as clogged. These periods were assigned (i) based on regular maintenance of the measurement station and (ii) irregular behavior of the measurement series compared to the precipitation signal from the other nearby measurement stations.
Column “VWC_0.7m_right” and “ST_5TE_0.7m_right” were set to not available (NA) for the period after the 2023-06-19T14:00:00Z due to irregular behavior of the ECH2O - 5TE sensor.

en: In-situ soil moisture measurements, Wasen i.E., flat location, since 2019

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each. Meteorological variables such as air temperature or precipitation can be received from MeteoSwiss.
Time intervall: 1 hour.
Measurement period: since June 2021
Location: flat terrain, meadow (official MeteoSwiss station)
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Napf, since 2021

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, as well as air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: since April 2021.
Location: hillslope, meadow
For a detailed description of site, soil and vegetation: see attached document.
Update 2025:
The “precipitation” column was set to not available (NA) for periods when the pluviometer was identified as clogged. These periods were assigned (i) based on regular maintenance of the measurement station and (ii) irregular behavior of the measurement series compared to the precipitation signal from the other nearby measurement stations.

en: In-situ soil moisture measurements, Ranflüh, since 2021

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each. Meteorological variables, such as air temperature or precipitation can be received from MeteoSwiss.
Time intervall: 1 hour. Measurement period: since June 2021.
Location: flat terrain, meadow (measurement site of MeteoSwiss)
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Langnau i E, since 2021

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, as well as air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: since April 2021.
Location: slope, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Trub, since 2021

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, and two additional soil temperature measurements (oC), air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: April 2019-Dec 2023.
Location: flat terrain, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Wasen i.E., flat location, 2019-2023

en:
Volumetric soil water content (m3 m-3), soil water potential (mbar) and soil temperatures (oC) measured in two profiles and four depths each, as well as air temperature (oC) and precipitation (mm). Time intervall: 1 hour. Measurement period: April 2021-Dec 2023.
Location: hillslope, meadow
For a detailed description of site, soil and vegetation: see attached document.

en: In-situ soil moisture measurements, Ranflüh, 2021-2023

landslide-early-warning

display_name: landslide-early-warning

soil-moisture

display_name: soil-moisture

soil-temperature

display_name: soil-temperature

soil-water-content

display_name: soil-water-content

soil-water-matrix-potential

display_name: soil-water-matrix-potential


en:
This dataset groups numerical simulation outputs and validation measurement data produced in the context of the following [publication]: _not published yet_
The snow transport model [snowBedFoam] was used to analyse snow deposition around a specific type of Alpine PV structures named HELIOPLANT®.
The results of a sensitivity analysis of multiple key parameters that govern the spatial organisation of these structures are provided here. Measurements of snow distribution taken from the test-site of the [Gondosolar] project, are provided too.

To reproduce the results of the aforementioned publication, follow the instructions on this [repository].
[publication]: https://
[snowBedFoam]: https://www.doi.org/10.16904/envidat.223
[Gondosolar]: https://www.gondosolar.ch
[repository]: https://github.com/frischwood/snowbed-helio.git

en: alpine photovoltaic preferential-deposition renewable-energy snow-transport

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: EnviDat: the Environmental Data Portal

en: Drifting and blowing snow distribution around structures for Alpine PV applications

educ

en: Education, culture and sport

en:
This file contains the snowBedFoam simulations carried out to produce the results presented in: _article not published yet_.
 Content
 1. /simulations
Groups all simulations folders organised by parameter (azimuth, groupsize, height, interspace) and by type of experiment (single_ref, group_ref).
 2. /simulations/[parameter]/
For each parameter multiple simulations were carried out. Each simulation folder follows the same naming systematic:
`helioplant_n#_h#_ARL#_BL#_az#_windDir#`
- n: number of Helioplant units
- h: height-above-surface
- sp: regular distance between the units
- ARL: additional refinement level
- BL: boundary layer first cell height
- windDir: wind direction
- stag: staggered arangement (suffix)
Here is an example of a folder content for a specific parameter
(simulations/azimuth/):
- `helioplant_n9_h07_sp10_ARL45_BL0015_az30_windDir5`: following the naming systematic this folder corresponds to a simulation with 9 aligned Helioplant units with 0.7m of height-above-surface, an inter-unit distance of 10m an azimuth of 30° and a wind direction of 5°.
 3. /simulations/[parameter]/[helioplant_n#_h#_ARL#_BL#_az#_windDir#]
Each simulation folder contains multiple sub-folders (0/, 100/, 300/, constant/ etc.) and files that define the experiment. For each simulation, the files used in the processing [scripts] are the following:
- 0/Cx: contains the x coordinates of sampling grid cells and of the Helioplants structures.
- 0/Cy: contains the y coordinates of sampling grid cells and of the Helioplants structures.
- 300/kinematicCloud-massCheckPatterns: contains the snow mass distribution values [kg/m2] for each grid cell.

[scripts]: https://github.com/frischwood/snowbed-helio.git

en: Browse simulation files

alpine

display_name: alpine

photovoltaic

display_name: photovoltaic

preferential-deposition

display_name: preferential-deposition

renewable-energy

display_name: renewable-energy

snow-transport

display_name: snow-transport


en: This database contains open, harmonized, and ready-to-use global data on holdover time. Holdover time is defined as the time between lightning-induced fire ignition and fire detection. The first version of the database is composed of three data files (censored data, non-censored data, ancillary data) and three metadata files (description of database variables, list of references, reproducible examples). These data were collected through a literature review of LIW studies and some datasets were assembled by authors of the original studies, covering more than 150,000 LIW from 13 countries in five continents and a time span of a century from 1921 to 2020. Censored data are the core of the database and consist of frequency data reporting the number or relative frequency of LIW per interval of holdover time. Ancillary data provide additional information on the methods and contexts in which the data were generated in the original studies. Potential contributors to the database are encouraged to contact the corresponding author in the readme file.

en: database forest-fire holdover lightning-location-system smouldering zenodo

en: Database on holdover time of lightning-ignited wildfires

database

display_name: database

forest-fire

display_name: forest-fire

holdover

display_name: holdover

lightning-location-system

display_name: lightning-location-system

smouldering

display_name: smouldering

zenodo

display_name: zenodo


en:
 Background information
Climate change-induced range expansion of treeline populations depends on their successful recruitment, which requires dispersal of viable seeds followed by successful establishment of individual propagules. The Global Treeline Range Expansion Experiment (G-TREE) is a global initiative involving researchers from Europe, North America, Australia and New Zealand (Brown et al., 2013). At 15 alpine and Arctic treeline sites worldwide the mechanisms determining the elevational and latitudinal distribution of tree populations are studied using a standardized experimental approach. In summer 2013, a multifactorial seedling recruitment experiment has been established at the Stillberg ecological treeline research site. The aim of this experiment, is to quantify the effect of multiple abiotic and biotic drivers on emergence, survival, and growth of *Larix decidua* and *Picea abies* seedlings in replicated plots along an elevation gradient with three sites below (1930 m a.s.l.), at (2090 m a.s.l.), and above treeline (2410 m a.s.l.; Frei et al., 2018). All plots have been surveyed annually to count seedlings and to measure their total height. Additional environmental factors, such as soil temperature, have been recorded.

 Experimental design
The Stillberg research area is located in the Eastern Swiss Alps near Davos, Switzerland. The site has been used for several long-term monitoring as well as experimental studies for the last four decades. Our G-TREE experiment consists of a lowest site located in a subalpine Larch-Spruce forest (*Larici-Picetum*) dominated by *Larix decidua* and *Picea abies* (1930 m a.s.l.), a transition zone site dominated by alpine shrubs (2100 m a.s.l.), and an uppermost site in an alpine meadow with some dwarf shrubs (2390 m a.s.l.). The three experimental sites were set up following the standard protocol of the global G-TREE initiative (Brown et al., 2013). In a split-plot design, 20 plots (224 cm × 45 cm) were established at each site, which were randomly assigned to the 2 × 2 treatment combinations of the main factors seeding and scarification (i.e. seeding and scarification, seeding only, scarification only, and full control), resulting in five replications per main treatment combination. Each plot was divided into 16 split-plots (22.5 cm × 28 cm), to which treatment combinations of four additional two-level factors species (larch and spruce), provenance (low- and high-elevation), herbivore exclosure (with and without exclosure), and seeding year (2013, 2014) were randomly assigned, which resulted in a total of 960 split-plots (Details see Frei et al. 2018).

 Data description
All plots have been surveyed annually to count seedlings and to measure their total height. Seedling height was assessed with a hand ruler as the total length from the original emerging point to the apical meristem (Details see Frei et al. 2018). Additionally, soil temperature at each site, has been continuously recorded since 2013. Here, we present data from eight years (2013–2021).

en: climate-change forest g-tree larix-decidua picea-abies seedling-recruitment stillberg swiss-alps treeline

en: G-TREE: Global Treeline Range Expansion Experiment Davos, Switzerland

en: climate data G-TREE experiment, Davos, Switzerland

climate-change

display_name: climate-change

forest

display_name: forest

g-tree

display_name: g-tree

larix-decidua

display_name: larix-decidua

picea-abies

display_name: picea-abies

seedling-recruitment

display_name: seedling-recruitment

stillberg

display_name: stillberg

swiss-alps

display_name: swiss-alps

treeline

display_name: treeline


en:
Tropical reef fishes exhibit a large disparity of organismal morphologies contributing to their astonishing biodiversity. Morphological disparity, scaling from differences among individuals within populations to differences among species, is governed by ecological and evolutionary processes.
Here, we examined the relationship between intra- and interspecific disparity in 1111 individuals from 17 tropical reef fish species, representing 10 families with different dispersal abilities, across four Indian Ocean regions. We compared intraspecific measurements with species-level measures from a database of 1061 reef fish species. Species with high morphological disparity among individuals from distinct regions are found to be nested in families that display a high disparity among their genera. We show an association between the morphological disparity at the intra- and interspecific levels for several morphological ratios such as the caudal peduncle elongation. We evaluated the link between morphological disparity and genetic diversity with species dispersal ability. A structural equation model indicates that dispersal ability correlates positively with species genetic diversity, which is associated with morphological disparity.
Our results suggest that traits associated with dispersal may foster gene flow and morphological evolution. However, future works combining genomic, morphological and environmental data across more species is necessary to generalize these findings to other regions.

en: indian-ocean landscape landscape-evolution landscape-genetics morphology reef-fish

en: Continuity in morphological disparity in tropical reef fishes across evolutionary scales

indian-ocean

display_name: indian-ocean

landscape

display_name: landscape

landscape-evolution

display_name: landscape-evolution

landscape-genetics

display_name: landscape-genetics

morphology

display_name: morphology

reef-fish

display_name: reef-fish


en:
This repository contains data related to the Swiss-wide survey of the RESTORE project. This project is a collaboration between the Swiss Federal Institute for Forest, Snow and Landscape Research (WSL) and the Swiss Federal Laboratories for Materials Science & Technology (EMPA). It has received funding from the Swiss National Science Foundation. The objective of the RESTORE project was to assess the effects of green spaces as facilitators and noise as impediment to recover from stress in people's daily environments across Switzerland.
We conducted a nation-wide participatory mapping survey among Swiss residents to explore:
1.	The effects of greenness and noise exposure on psychological restoration when looking out of the window at home or when visiting nearby green spaces. It adopted a landscape approach to examine the interplay between environmental factors, individual perceptions, and personal traits – Scientific article 1
2.	The multiple aspects that constraint restoration when visiting nearby green spaces – Scientific article 2
Accordingly, this repository includes data and documentation for the following 2 scientific articles:
1.	Scientific article 1. “The role of greenness and road traffic noise for psychological restoration in everyday environments. A participatory mapping approach”. Landscape and Urban Planning, 2025
2.	Scientific article 2. “Perceived constraints for psychological restoration in nearby greenspaces. An exploratory and multi-dimensional approach”. Urban Forestry and Urban Greening, 2025

en: landscape-perception outdoor-restoration ppgis survey traffic-noise

en: Swiss-wide survey on restorative places and road traffic noise

en: Questionnaire in French

en: RESTORE WP4_Questionnaire_French.pdf

en: Questionnaire in German

en: RESTORE WP4_Questionnaire_German.pdf

en: Questionnaire in Italian

en: RESTORE WP4_Questionnaire_Italian.pdf

en: Description of the sample stratification process for the invitation to participate in the survey

en: Study protocol of the survey

en: Cleaned raw data from survey for article in Landscape and Urban Planning [https://doi.org/10.1016/j.landurbplan.2025.105339](https://doi.org/10.1016/j.landurbplan.2025.105339)

en: Processed survey data of restorative locations for article in Landscape and Urban Planning [https://doi.org/10.1016/j.landurbplan.2025.105339](https://doi.org/10.1016/j.landurbplan.2025.105339)

en: Processed survey data for window view for article in Landscape and Urban Planning [https://doi.org/10.1016/j.landurbplan.2025.105339](https://doi.org/10.1016/j.landurbplan.2025.105339)

en: Variable list for statistical analyses for article in Landscape and Urban Planning [https://doi.org/10.1016/j.landurbplan.2025.105339](https://doi.org/10.1016/j.landurbplan.2025.105339)

en: Raw data for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Processed data for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Variable list for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Processed data for coding analysis for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Coding analysis first round for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Coding analysis second round for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

en: Coding analysis third round for article in Urban Forestry and Urban Greening [https://doi.org/10.1016/j.ufug.2025.128746](https://doi.org/10.1016/j.ufug.2025.128746)

landscape-perception

display_name: landscape-perception

outdoor-restoration

display_name: outdoor-restoration

ppgis

display_name: ppgis

survey

display_name: survey

traffic-noise

display_name: traffic-noise


en:
Long-term phenological data in alpine regions are often limited to a few locations and thus, little is known about climate-change induced plant phenological shifts above the treeline. Because plant growth initiation in seasonally snow-covered regions is largely driven by snowmelt timing and local temperature, it is essential to simultaneously track phenological shifts, snowmelt, and near-ground temperatures. In this study, we make use of ultrasonic snow height sensors installed at climate stations in the Swiss Alps to reveal phenological advance of grassland ecosystems and relate them to climatic changes over 25 years (1998 – 2023). When snow is absent, these snow height sensors additionally provide information on plant growth at a uniquely fine temporal scale. Daily temperatures and snow- / plant height values, annual phenological- and melt-out dates were derived from IMIS climate station data (doi.org/10.16904/envidat.406). We observed an advance of green-up by -2.4 days/decade coinciding with strong warming of up to +0.8°C/decade. Although the timing of melt-out has not changed significantly over the study period in this focal region, phenological responses to early melt-out years varied due to differing influences of photoperiodic and thermal constraints, which were not equally important across elevations and communities. Phenological shifts of alpine grasslands are thus likely to become even more pronounced if melt-out timing advances in the future as predicted.
This repository relates to the publication Zehnder et al. (2025). Snow height sensors reveal phenological advance in alpine grasslands. Global Change Biology. accepted. The model data and code that support our findings are deposited in this repository.

en: alpine climate grassland imis long-term monitoring phenology snow snowmelt ultrasonic

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: EnviDat: the Environmental Data Portal

en: IMIS Phenology Data Since 1998

educ

en: Education, culture and sport

en: Contains unfiltered annual phenological, temperature and snow-climatic data for all IMIS stations.

en: Contains daily climate station data including daily median temperatures, snow depth, plant height, and annual melt-out timings.

en: Contains annual phenological variables and phenofit outputs, sorted, ordered and renamed according with the readme in this repository

en: Temporary data. Contains annual unfiltered output of phenofit (i.e. the variable names are in line with the phenofit documentation), including all curve parametrization variables for plotting and additional variables, which are not necessarily used in the analysis.

en: Contains filtered annual phenological data from 40 IMIS stations suitable and used for phenological analysis

en: Contains IMIS station location data

en: Is the readme that documents all data and code in this repository

en: implements the phenofit method. Note: This script is computationally intensive and may take a while to run. We recommend using the temporary data created from it (i.e. starting from 2_temperature.R). For a better description of the phenofit R package and the different methods to determine the SOG, see Kong et al. (2022): https://doi.org/10.1111/2041-210X.13870

en: Documents and reproduces the statistical models used in the analysis.

en: Contains custom functions required for the scripts; this file must be sourced before running other scripts.

en: Generates the methods-related figures used in the publication.

en: Snow3.png and grass.png are needed for plotting the methods plot in 5_methods_plots.Rmd

format: PNG

media_type: image/png

alpine

display_name: alpine

climate

display_name: climate

grassland

display_name: grassland

imis

display_name: imis

long-term

display_name: long-term

monitoring

display_name: monitoring

phenology

display_name: phenology

snow

display_name: snow

snowmelt

display_name: snowmelt

ultrasonic

display_name: ultrasonic


en:
This dataset accompanies the publication "How Flat is Flat? Investigating the spatial variability of snow surface temperature and roughness on landfast sea ice using UAVs in McMurdo Sound, Antarctica".
The dataset consists of 1) processed orthomosaic of RGB values, snow topography (digital elevation model), and surface temperature, 2) topography-dependent irradiance map, and 3) point data of measured radiation and atmospheric parameters in the McMurdo Sound, October-December 2022. The data was collected as part of the New Zealand Marsden Fund Research Grant 21-VUW-103 "Can Snow Change the Fate of Antarctic Sea Ice?". Unprocessed data associated with this field campaign are published in 10.16904/envidat.633.
For the airborne measurements, we used a DJI Matrice 30T, a multi-rotor (quadcopter) UAV with self-heating batteries, suitable for operations in polar conditions (temperature range from -20 to +50 °C). The UAV has a wide-angle camera (12 megapixels) for RGB images and a thermal camera (Uncooled Vox Microbolometer, long-wave infrared spectrum 8-14 µm, 1.31 megapixels) for TIR images with an accuracy of ±2 °C or ± 2 %.
GNSS data includes high-precision location information (latitude, longitude, ellipsoidal height, receiver clock offset, and timestamps formatted in decimal hours and day-of-year notation).
WE calculated the distribution of received solar irradiance over the sea-ice surface using a terrain-corrected radiative transfer model and measured shortwave radiation components, accounting for surface roughness, aspect, slope, and solar position during the flight, while applying terrain shading and measured diffuse radiation.
The broadband radiation station data consists of shortwave (Sw) and longwave (Lw) radiation measurements (Kipp & Zonen CMP22 pyranometers and CGR4 pyrgeometers).
Surface temperature readings from cold, sediment, and hot targets were recorded using Apogee SI-121-SS sensors.
This dataset also contains automated weather station (AWS) data (air and snow surface temperatures, relative humidity, wind direction, and wind speed).
For detailed information, please use the README file.

en: antarctica drone irra sea-ice snow snow-roughness snow-temperature uav

en: Snow On Antarctic Sea Ice - McMurdoSound 2022 - UAV Retrievals of Snow Topography and Snow Surface Temperature

antarctica

display_name: antarctica

drone

display_name: drone

irra

display_name: irra

sea-ice

display_name: sea-ice

snow-roughness

display_name: snow-roughness

snow-temperature

display_name: snow-temperature

uav

display_name: uav


en: The data described in this article were collected daily over the period 4 June 2018 to 23 August 2018 and contains information of several data sources. The database includes information on national recipes and their ingredients for 171 countries, measures for food taste similarities between all 171 countries as well as bilateral migration and agro-food trade data for 5 years. The database can be used for analyzing e.g., the relation between food preferences and international trade or food preferences and health outcomes (e.g., obesity) across countries.

en: agro-food-trade food-preferences food-taste-similarity latent-semantic-analysis national-dishes

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: EnviDat: the Environmental Data Portal

en: Data of national dishes, their similarity and trade flows

en:
The data include information on national dishes, migration data and data for bilateral food
trade flows for 5 years as well as importer and exporter GDP, population, distance between
most populated cities, bilateral information on Preferential Trade Agreements, common
official primary langauge, common colonizer post-1945, colonial relationship for overall
171 countries. The final data set contains 145,350 observations (29,070 country pairs for
5 years)

en: National dishes, migration data and data for bilateral food trade flows

en: shows information of ingredients of all national dishes of 171 countries and their names

en: information on ingredients of national dishes

en:
The figures show the distribution of two dyadic food tastes similarity measures on the base of
the national dishes: (i) the Manhattan distance and the (ii) latent semantic analysis. The chord diagram
shows the results for country pairs with most and less similarity on basis of the LSA-approach.

en: dyadic food similarity measures, pairwise similarity and dissimilarity (chord diagram)

agro-food-trade

display_name: agro-food-trade

food-preferences

display_name: food-preferences

food-taste-similarity

display_name: food-taste-similarity

latent-semantic-analysis

display_name: latent-semantic-analysis

national-dishes

display_name: national-dishes


en:
Description: Fish environmental DNA data set collected in 2023 in the Calanques National Park
The eDNA samples were collected in 2023 in two locations (Moyades, M−FPA and “Impérial du large”, I-LPA), during the winter (January- February) season, with the sampling dates depending on the weather conditions. For the M−FPA, samples were collected between Moyades island and Riou island, while for the I-LPA, they were collected on the south side of the “Impérial du large” island. To account for the existing bathymetry, in the M−FPA the samples were taken at two sampling sites with depths of 20 and 40 m, while in the I-LPA they were taken at two sites with depths of 20 and 80 m.
At each site, in-situ filtration of seawater was performed using a double-head submersible pump (Subspace, Geneva, Switzerland; nominal flow of ca. 1 L/min) strapped to an underwater scooter with 2 VigiDNA 0.20 µm filtration capsules (SPYGEN, le Bourget du Lac, France), along with disposable sterile tubing. The samples were collected along two horizontal transects (up to 400 m in length) during each closed-circuit rebreather dive, enabling the filtration of a water volume of 15 L/filter per depth, as close as possible to the substrate. Two filter replicates were collected by two divers at each sampling site, except in two cases where bad weather conditions or logistical issues meant that only one replicate was sampled.
After the filtration, the remaining seawater was emptied from the capsule back on the boat and replaced by a 80 mL CL1 conservation buffer (SPYGEN, le Bourget du Lac, France). To prevent any contamination, a strict protocol was followed during the entire process, requiring disposable gloves and single-use filtration equipment. Finally, the samples were stored at room temperature. We followed a strict contamination control protocol in both field and laboratory stages. Each water sample processing included the use of disposable gloves and single-use filtration equipment to avoid any risk of contamination. Libraries were prepared with ligation using the MetaFast protocol (Fasteris).
Data content:
	* rawdata/: contains the raw reads for each individual sample. One archive contains the paired-end reads specified by the _R1 or _R2 suffix as well as individually tagged PCR replicates (if available) together with an archive containing all extraction and PCR blank samples of the library. Reads have been demultiplexed using cutadapt but not trimmed, individual demultiplexing tags and primers remain present in the sequences.
	* taxadata/: contains the table with all detected taxonomy for each sample after bioinformatic processing (see Polanco et al. 2020 for details; https://doi.org/10.1002/edn3.140) and associated field metadata.
	* metadata/: contains two metadata files, one related to the data collected in the field for each filter, and the second related to the sequencing process in the lab (including the tag sequence, library name, and marker information for each sample)

en: edna fish-composition marine marseille mediterraneaen teleo

en: Environmental DNA Marine France Calanques 2023

educ

en: Education, culture and sport

en: Please use cyberduck to download for the moment

en: Data access

edna

display_name: edna

fish-composition

display_name: fish-composition

marine

display_name: marine

marseille

display_name: marseille

mediterraneaen

display_name: mediterraneaen

teleo

display_name: teleo


en:
This dataset contains all processed data, simulation outputs, and R/Python scripts used to assess the robustness of regional multi-habitat food webs in Switzerland under various non-random species extinction scenarios. It accompanies the manuscript submitted to Communications Biology, and available as a preprint here:
Reji Chacko, M, Albouy, C., Altermatt, F., et al. Decreases in the robustness of regional food webs to sequential species extinctions following habitat loss, 04 December 2024, PREPRINT (Version 1) available at Research Square [https://doi.org/10.21203/rs.3.rs-5225132/v1]
Please note that the most up-to-date version of the simulations code is available here: https://github.com/mrejichacko/casCHades

en: food-webs habitat-fragmentation metaweb network-analysis robustness trophic-networks trophich

en: Simulation data and analyses of regional food web robustness under habitat loss

en:
This resource is broken down into two sections: 01 simulations and 02 analyses
In the 01 simulations section, the program which run the simulations for the paper is provided. It is prepared such that it can be easily run on a cluster. Please note that the results folder is empty, as they would have included 108,000 csv files. Instead, the summarised version is available in the next section.
In the 02 analyses section, all code needed to recreate the analyses and figures from the paper are provided.
Please refer to the separate README.txt files for each section for further information.

food-webs

display_name: food-webs

habitat-fragmentation

display_name: habitat-fragmentation

metaweb

display_name: metaweb

network-analysis

display_name: network-analysis

robustness

display_name: robustness

trophic-networks

display_name: trophic-networks

trophich

display_name: trophich


en: Structural and functional changes of microbial communities in ephemeral stream sediments and adjacent soils between was assessed in an artificial newly created catchment at 3 and 13 years after catchment construction. Bacterial and fungal communities, respiration and extracellular enzyme activities were assessed.

en: beta-diversity ecosystem-functions microbial-biodiversity microbial-respiration soil-respiration

envidat

en: EnviDat is the WSL data portal providing unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. Through the sharing of unique and high-value data sets worldwide, EnviDat fosters research and contributes to advancing environmental science.

en: EnviDat: the Environmental Data Portal

en: Chicken Creek 10 years

en: Bacterial ASVs and taxonomic tables

en: Bacterial amplicon sequencing

en: Fungal ASVs and taxonomic tables

en: Fungal amplicon sequencing

en: Extracellular enzyme activities, respiration and sites metadata

en: Microbial functions and metadata

beta-diversity

display_name: beta-diversity

ecosystem-functions

display_name: ecosystem-functions

microbial-biodiversity

display_name: microbial-biodiversity

microbial-respiration

display_name: microbial-respiration

soil-respiration

display_name: soil-respiration


defoliation-growth-data

en:
Using a literature review extracted data from 26 published papers which had data on individual tree defoliation and growth relationships In Europe.
This data set includes 415 defoliation-growth data points from 16 different tree species covering 15+ countries in Europe. Growth metrics used in individual papers were different, and included increments in terms of volume, tree rings width, radial growth, basal area and biomass. All growth metrics were converted into relative growth (presented in this dataset), expressed as a percentage of the growth of progressively defoliated trees in relation to the growth of those trees adopted as reference (control) defoliation level (i.e. the growth of the lowest defoliation level in each study was used as the reference growth point).

en: defoliation forest-health literature-review relative-growth tree-growth

en: Defoliation-Growth data

title_for_slug: defoliation-growth-data

educ

en: Education, culture and sport

defoliation

display_name: defoliation

forest-health

display_name: forest-health

literature-review

display_name: literature-review

relative-growth

display_name: relative-growth

tree-growth

display_name: tree-growth


en:
 Background
Urban ecosystems are associated with socio-ecological conditions that can filter and promote taxa. However, the strength of the effect of ecological filtering on biodiversity could vary among biotic and abiotic factors. Here, we provide the data used to investigate the effects of habitat amount, temperature, and host-enemy biotic interactions in shaping communities of cavity-nesting bees and wasps (CNBW) and their natural enemies. To do so, we installed trap-nests in 80 sites distributed along urban intensity gradients in 5 European cities (Antwerp, Paris, Poznan, Tartu and Zurich). We quantified the species richness and abundance of CNBW hosts and their natural enemies, as well as two performance traits (survival and parasitism) and two life-history traits (sex ratio and number of offspring per nest for the hosts).
The dataset contains:
* The taxonomic metrics on CNBW
* The taxonomic metrics on the natural enemies from CNBW
* The life-history traits and performance traits

en: bees cavity-nesting cities hymennoptera hymenoptera life-history-traits natural-enemies performance-traits richness urban-ecology urbanization wasps

en: Community structure, life-history traits and performance traits of urban cavity-nesting bees annd wasps

en:
The data contains at the site level the species richness of cavity-nesting bees and wasps. It also contains site level estimates of the life-history traits and the performance traits.

We calculated species richness, abundance, and number of nests of the hatched hosts separately for bees and wasps. We calculated the abundance of hatched hosts as the number of brood cells where an individual emerged, i.e. the total number of brood cells minus the number of parasitized cells and the number of cells with no emergence for reasons other than parasitism.

City codes: An =Antwerp, Pa = Paris; Po = Poznan; Ta =Tartu; Zu= Zurich

en: Taxonomic metrics on CNBW

en: It contains the species richness and the abundance of natural enemies per site.

en: Taxonomic metrics on the natural enemies

en:
It contains the data of two performance traits (survival and parasitism) and two life-history traits (sex ratio and number of offspring per nest for the hosts) at the nest level.

We assessed performance traits, i.e. survival and parasitism, at the individual cell level. Specifically, for each cell within a nest, we noted whether the cell was alive or dead (survival), and whether it had a parasite or not (parasitism). Further, we calculated the parasitism rate as the number of cells with a parasite divided by the total number of cells. Concerning life-history traits, we calculated the total number of brood cells per nest as the total number of brood cells within a single nest, regardless of whether the larvae were dead, alive or parasitized. Finally, we used the probability that a femalehost emerged from a given cell as a proxy for the sex ratio. To do so, we first identified the sex of the individual hosts. Then, we noted it in a binary way to indicate whether the host was a female or not. We could identify the sex of all hatched hosts. Further, because CNBW first lay females and then males, on some occasions we could also identify the host sex in dead and parasitized cells, that is, when we had already identified the sex of the preceding and the following cells.

en: Performance traits and life-history traits

en: For each site, the IDs, city, coordinates, structure where the trapnest was attached and height is provided

en: Information on the study sites

en: Predictors of the study

bees

display_name: bees

cavity-nesting

display_name: cavity-nesting

cities

display_name: cities

hymennoptera

display_name: hymennoptera

hymenoptera

display_name: hymenoptera

life-history-traits

display_name: life-history-traits

natural-enemies

display_name: natural-enemies

performance-traits

display_name: performance-traits

richness

display_name: richness

urban-ecology

display_name: urban-ecology

urbanization

display_name: urbanization

wasps

display_name: wasps